AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239740 MtrunA17_Chr6g0477261 59.718 355 120 5 224 556 293 646 7.65e-134 404
Msa0239740 MtrunA17_Chr6g0477261 86.842 76 10 0 149 224 1 76 5.14e-36 142
Msa0239740 MtrunA17_Chr2g0296781 64.537 313 98 4 224 524 404 715 3.75e-125 384
Msa0239740 MtrunA17_Chr2g0296781 74.054 185 48 0 40 224 3 187 1.94e-90 293
Msa0239740 MtrunA17_Chr1g0196541 61.092 293 102 5 224 510 404 690 6.92e-104 328
Msa0239740 MtrunA17_Chr1g0196541 56.284 183 80 0 40 222 3 185 3.44e-61 215
Msa0239740 MtrunA17_Chr6g0476441 50.352 284 98 5 316 557 1 283 4.33e-75 240
Msa0239740 MtrunA17_Chr5g0441581 36.260 262 155 6 224 478 432 688 7.37e-39 151
Msa0239740 MtrunA17_Chr5g0441581 35.238 210 120 5 20 223 15 214 1.06e-26 114
Msa0239740 MtrunA17_Chr6g0476431 61.628 86 33 0 40 125 3 88 1.99e-31 117
Msa0239740 MtrunA17_Chr3g0080351 30.693 202 125 5 201 402 460 646 1.82e-21 99.0
Msa0239740 MtrunA17_Chr2g0291581 36.313 179 100 6 204 377 453 622 3.62e-21 97.8
Msa0239740 MtrunA17_Chr2g0291581 28.125 224 147 6 34 256 71 281 3.27e-13 72.4
Msa0239740 MtrunA17_Chr1g0207551 38.961 154 87 2 225 378 445 591 5.12e-21 97.4
Msa0239740 MtrunA17_Chr1g0207551 25.316 237 157 5 31 257 31 257 8.92e-13 71.2
Msa0239740 MtrunA17_Chr6g0451441 32.000 200 126 5 2 195 52 247 3.19e-20 94.0
Msa0239740 MtrunA17_Chr5g0440451 31.579 190 122 5 223 411 457 639 5.16e-19 91.3
Msa0239740 MtrunA17_Chr2g0329031 28.340 247 144 7 40 278 20 241 1.38e-18 89.7
Msa0239740 MtrunA17_Chr2g0329031 31.646 158 100 3 224 381 417 566 7.75e-17 84.0
Msa0239740 MtrunA17_Chr7g0258861 25.692 253 166 7 31 268 7 252 2.51e-16 80.1
Msa0239740 MtrunA17_Chr2g0291591 26.407 231 156 7 33 257 63 285 7.45e-16 80.5
Msa0239740 MtrunA17_Chr3g0118611 31.034 174 107 5 225 397 356 517 2.02e-15 79.7
Msa0239740 MtrunA17_Chr1g0172041 31.818 110 74 1 290 399 3 111 5.08e-15 71.6
Msa0239740 MtrunA17_Chr5g0448761 30.065 153 101 2 224 376 479 625 1.02e-14 77.4
Msa0239740 MtrunA17_Chr5g0448761 26.961 204 137 7 31 224 57 258 1.82e-11 67.0
Msa0239740 MtrunA17_Chr8g0363841 27.941 204 139 4 30 225 10 213 5.52e-14 75.1
Msa0239740 MtrunA17_Chr2g0324011 24.514 257 179 7 31 276 7 259 2.51e-13 72.8
Msa0239740 MtrunA17_Chr5g0448511 32.215 149 93 4 224 371 251 392 1.19e-12 70.5
Msa0239740 MtrunA17_Chr3g0077731 45.370 108 46 4 429 524 1 107 4.97e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239740 AT4G15090.1 27.193 342 198 11 225 543 465 778 1.70e-23 105
Msa0239740 AT4G15090.1 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa0239740 AT4G15090.5 27.193 342 198 11 225 543 465 778 1.70e-23 105
Msa0239740 AT4G15090.5 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa0239740 AT4G15090.3 27.193 342 198 11 225 543 465 778 1.70e-23 105
Msa0239740 AT4G15090.3 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa0239740 AT4G15090.2 27.193 342 198 11 225 543 465 778 1.70e-23 105
Msa0239740 AT4G15090.2 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa0239740 AT4G15090.4 27.193 342 198 11 225 543 465 778 1.70e-23 105
Msa0239740 AT4G15090.4 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa0239740 AT3G22170.2 36.723 177 98 4 204 379 458 621 2.01e-23 105
Msa0239740 AT3G22170.1 36.723 177 98 4 204 379 458 621 2.01e-23 105
Msa0239740 AT1G76320.2 31.602 231 126 9 40 257 3 214 2.18e-21 99.0
Msa0239740 AT1G76320.2 33.750 160 97 4 224 383 401 551 2.20e-19 92.4
Msa0239740 AT1G76320.1 31.602 231 126 9 40 257 3 214 2.23e-21 99.0
Msa0239740 AT1G76320.1 33.750 160 97 4 224 383 401 551 2.09e-19 92.8
Msa0239740 AT1G76320.4 31.602 231 126 9 40 257 3 214 2.23e-21 99.0
Msa0239740 AT1G76320.4 33.750 160 97 4 224 383 401 551 2.09e-19 92.8
Msa0239740 AT1G76320.3 31.602 231 126 9 40 257 3 214 2.56e-21 98.6
Msa0239740 AT1G76320.3 33.750 160 97 4 224 383 401 551 3.19e-19 92.0
Msa0239740 AT1G52520.1 33.962 212 121 7 224 418 484 693 8.94e-21 97.1
Msa0239740 AT4G19990.3 33.333 183 107 5 224 402 412 583 1.66e-15 80.5
Msa0239740 AT4G19990.4 33.333 183 107 5 224 402 412 583 1.66e-15 80.5
Msa0239740 AT4G19990.5 33.333 183 107 5 224 402 412 583 1.84e-15 80.1
Msa0239740 AT4G19990.1 33.333 183 107 5 224 402 355 526 1.91e-15 80.1
Msa0239740 AT4G19990.6 33.333 183 107 5 224 402 412 583 1.92e-15 80.1
Msa0239740 AT4G19990.2 33.333 183 107 5 224 402 412 583 1.92e-15 80.1
Msa0239740 AT4G19990.7 33.333 183 107 5 224 402 426 597 2.37e-15 79.7
Msa0239740 AT1G80010.1 30.769 156 103 4 224 377 510 662 1.83e-14 77.0
Msa0239740 AT2G32250.2 30.921 152 94 3 224 373 408 550 2.62e-14 76.6
Msa0239740 AT2G32250.4 30.921 152 94 3 224 373 408 550 2.62e-14 76.6
Msa0239740 AT2G32250.5 30.921 152 94 3 224 373 408 550 2.63e-14 76.6
Msa0239740 AT2G32250.8 30.921 152 94 3 224 373 367 509 2.63e-14 76.6
Msa0239740 AT2G32250.7 30.921 152 94 3 224 373 367 509 2.78e-14 76.6
Msa0239740 AT2G32250.6 30.921 152 94 3 224 373 408 550 2.84e-14 76.6
Msa0239740 AT2G32250.1 30.921 152 94 3 224 373 408 550 2.84e-14 76.6
Msa0239740 AT2G32250.3 30.921 152 94 3 224 373 408 550 2.84e-14 76.6
Msa0239740 AT4G38180.1 29.936 157 96 3 224 376 488 634 2.29e-13 73.6
Msa0239740 AT4G38180.1 24.664 223 157 6 12 225 51 271 4.93e-11 66.2
Msa0239740 AT4G38170.1 29.936 157 104 3 224 380 253 403 2.43e-13 73.2
Msa0239740 AT2G27110.2 30.968 155 97 6 224 376 433 579 8.53e-12 68.6
Msa0239740 AT2G27110.1 30.968 155 97 6 224 376 433 579 8.53e-12 68.6

Find 79 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTGGTGAATGCTTTC+TGG 0.174694 2_2:-14312319 None:intergenic
TCACTCATAGGTATTGAATT+TGG 0.197997 2_2:-14313323 None:intergenic
AAGGAAAACAAGGCTGATTT+TGG 0.221363 2_2:+14312242 Msa0239740:CDS
CAAGAGTTATGCCCAATCTA+TGG 0.242427 2_2:+14311013 Msa0239740:CDS
ATAGCTTGTATAAGTCATTT+TGG 0.245260 2_2:+14312281 Msa0239740:CDS
AATGCATGTATTTCTTTAGA+TGG 0.249459 2_2:+14311188 Msa0239740:CDS
CTAAATATAGTTCCAACTTT+AGG 0.250578 2_2:-14310963 None:intergenic
ATCCACAATATTAATGTTAC+AGG 0.261830 2_2:-14313388 None:intergenic
CTTTGTGTTCTTAAGTTAAC+AGG 0.271995 2_2:+14312563 Msa0239740:CDS
CTAAAATAGCGTGCTTTGTC+AGG 0.272247 2_2:-14311260 None:intergenic
CCTTTACTTCGAGTCGGTAT+AGG 0.279664 2_2:-14312887 None:intergenic
TTCCTATTTCGAATTGTTAC+AGG 0.287780 2_2:+14313473 Msa0239740:three_prime_UTR
TATGCCCAATCTATGGGTTT+TGG 0.292447 2_2:+14311020 Msa0239740:CDS
ATTTGTTTAAAATGAGGAAT+TGG 0.340063 2_2:+14312768 Msa0239740:CDS
CTCAAAGTCTTTCTCGTTGA+AGG 0.350216 2_2:-14312486 None:intergenic
TCATACTTGCTTTGAGAGAT+TGG 0.350261 2_2:+14312385 Msa0239740:CDS
GCCAGGGGATGCTTCTTTAG+AGG 0.353219 2_2:-14312816 None:intergenic
CTTTACTTCGAGTCGGTATA+GGG 0.375423 2_2:-14312886 None:intergenic
TACCTGTAACAATTCGAAAT+AGG 0.377069 2_2:-14313475 None:intergenic
AAGGGTATCCTCCTTCAAAA+AGG 0.379154 2_2:+14312906 Msa0239740:CDS
TTCATGACTTGAGAATAAAA+TGG 0.385023 2_2:-14313441 None:intergenic
ACCTATGAGTGAAGTAAATC+AGG 0.391661 2_2:+14313334 Msa0239740:CDS
TAACTCCAAAACCCATAGAT+TGG 0.409903 2_2:-14311025 None:intergenic
AAGTGAGGAGACTACGACTT+GGG 0.414907 2_2:+14311441 Msa0239740:CDS
ACCTGATTTACTTCACTCAT+AGG 0.422951 2_2:-14313335 None:intergenic
AATTAAAGATATAGTGTTTG+AGG 0.424835 2_2:+14312460 Msa0239740:CDS
TATTCTCAAGTCATGAATCA+TGG 0.442758 2_2:+14313447 Msa0239740:three_prime_UTR
AGGTATTGAATTTGGATTGA+AGG 0.452798 2_2:-14313315 None:intergenic
AACTCCAAAACCCATAGATT+GGG 0.455626 2_2:-14311024 None:intergenic
GAATATGACATTTGGTGAAA+AGG 0.456326 2_2:+14311397 Msa0239740:CDS
ATGATGATTTGTTTAAAATG+AGG 0.460118 2_2:+14312762 Msa0239740:CDS
TAAAATGAGGAATTGGATCA+AGG 0.463705 2_2:+14312775 Msa0239740:CDS
GAACCATCTTCCACAATGCC+AGG 0.467359 2_2:-14312833 None:intergenic
ATTGAGAGATAAAGTTGAAA+AGG 0.468812 2_2:+14312223 Msa0239740:CDS
TGTTGTTTGTTTCAATTCAA+AGG 0.475247 2_2:+14312521 Msa0239740:CDS
TTCCTGTAACATTAATATTG+TGG 0.477639 2_2:+14313386 Msa0239740:three_prime_UTR
CCACTGAGAGAAAATATAAG+AGG 0.477796 2_2:-14312606 None:intergenic
GTTCAAGTAGTTGATCTAGT+TGG 0.480957 2_2:+14313117 Msa0239740:CDS
GGTTATGAGAATATGACATT+TGG 0.482364 2_2:+14311389 Msa0239740:CDS
GGTATTGAATTTGGATTGAA+GGG 0.485774 2_2:-14313314 None:intergenic
CATTCAATCTAGCCATGCAC+TGG 0.485895 2_2:-14311169 None:intergenic
CCTATACCGACTCGAAGTAA+AGG 0.486452 2_2:+14312887 Msa0239740:CDS
CTATACCGACTCGAAGTAAA+GGG 0.490008 2_2:+14312888 Msa0239740:CDS
TCAATGGTTGTTGAAGCAAA+TGG 0.495114 2_2:+14311368 Msa0239740:CDS
TGGATCAAAGTATGTGAGTA+AGG 0.495408 2_2:+14311109 Msa0239740:CDS
TCCCCTGGCATTGTGGAAGA+TGG 0.500694 2_2:+14312830 Msa0239740:CDS
AAGAGTTATGCCCAATCTAT+GGG 0.502102 2_2:+14311014 Msa0239740:CDS
ACCTCTAAAGAAGCATCCCC+TGG 0.505424 2_2:+14312815 Msa0239740:CDS
AGGAGACTACGACTTGGGGC+TGG 0.514634 2_2:+14311446 Msa0239740:CDS
ACTTGCTTTGAGAGATTGGA+AGG 0.519549 2_2:+14312389 Msa0239740:CDS
ATTTGTATCTTCTGATGAAG+AGG 0.520293 2_2:+14310872 Msa0239740:CDS
TGGATCCTCGTTTGAAAAGG+AGG 0.528466 2_2:+14311297 Msa0239740:CDS
ATTCAAAGAATTTCAAGTGG+AGG 0.539575 2_2:+14312343 Msa0239740:CDS
TAAAATAGCGTGCTTTGTCA+GGG 0.562727 2_2:-14311259 None:intergenic
TTAGAACTCAATGATCAAGC+TGG 0.567016 2_2:+14311320 Msa0239740:CDS
GAAACTATATAGATAAAGTG+AGG 0.579861 2_2:+14311426 Msa0239740:CDS
TGAGAGAAAATATAAGAGGA+TGG 0.581159 2_2:-14312602 None:intergenic
AGACATACCCTTGTTAAATG+TGG 0.581997 2_2:+14312647 Msa0239740:CDS
AACCATCTTCCACAATGCCA+GGG 0.582504 2_2:-14312832 None:intergenic
AGAAGCATCCCCTGGCATTG+TGG 0.590947 2_2:+14312823 Msa0239740:CDS
ATTCAATCTAGCCATGCACT+GGG 0.603564 2_2:-14311168 None:intergenic
GATGAAGAGGAAATCAAAGA+GGG 0.610064 2_2:+14310885 Msa0239740:CDS
GATCAAAACCACATTTAACA+AGG 0.611615 2_2:-14312655 None:intergenic
TGATGAAGAGGAAATCAAAG+AGG 0.613658 2_2:+14310884 Msa0239740:CDS
AAAATGGAACTTAAATAACA+TGG 0.614120 2_2:-14313425 None:intergenic
TAAAGTTGAAAAGGAAAACA+AGG 0.627416 2_2:+14312232 Msa0239740:CDS
GGATACCCTTTACTTCGAGT+CGG 0.640214 2_2:-14312893 None:intergenic
AGTGAGGAGACTACGACTTG+GGG 0.641932 2_2:+14311442 Msa0239740:CDS
AAAATTCAAAGAATTTCAAG+TGG 0.644675 2_2:+14312340 Msa0239740:CDS
ATCAAAACCACATTTAACAA+GGG 0.648419 2_2:-14312654 None:intergenic
AAAGTGAGGAGACTACGACT+TGG 0.649574 2_2:+14311440 Msa0239740:CDS
ACTTGGGGCTGGAGATGCTG+AGG 0.650883 2_2:+14311457 Msa0239740:CDS
TTTACTCTAGCATGTAGTCG+TGG 0.653028 2_2:+14311089 Msa0239740:CDS
ACCATCTTCCACAATGCCAG+GGG 0.656502 2_2:-14312831 None:intergenic
ACAGAGTGGAAATCAACAAG+AGG 0.665527 2_2:+14312994 Msa0239740:CDS
CTGTTAACTTAAGAACACAA+AGG 0.666537 2_2:-14312562 None:intergenic
CTTGTACTTTAGATGCACAC+AGG 0.674948 2_2:-14313089 None:intergenic
TTTGGGATGAATGGACATGG+TGG 0.686298 2_2:+14313275 Msa0239740:CDS
ACGACAACGGATCATTCACA+TGG 0.717284 2_2:-14313592 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATACATATATGTTTTT+AGG + chr2_2:14313238-14313257 Msa0239740:intron 10.0%
!!! TTAATACATATATGTTTTTA+GGG + chr2_2:14313239-14313258 Msa0239740:intron 10.0%
!! GTCTAATATTCAATATTTAA+TGG + chr2_2:14313061-14313080 Msa0239740:intron 15.0%
!!! TAATACATATATGTTTTTAG+GGG + chr2_2:14313240-14313259 Msa0239740:intron 15.0%
!!! TTTTAGAAGTAGTAAGTTTT+TGG + chr2_2:14311277-14311296 Msa0239740:CDS 20.0%
!!! AAATTCTTTGAATTTTGCAT+TGG - chr2_2:14312336-14312355 None:intergenic 20.0%
!! AAAATTCAAAGAATTTCAAG+TGG + chr2_2:14312340-14312359 Msa0239740:CDS 20.0%
!! AATTAAAGATATAGTGTTTG+AGG + chr2_2:14312460-14312479 Msa0239740:CDS 20.0%
!!! AATTCAAAGGTATTTTATGT+AGG + chr2_2:14312534-14312553 Msa0239740:CDS 20.0%
!!! CATTTTAAACAAATCATCAT+CGG - chr2_2:14312762-14312781 None:intergenic 20.0%
!!! ATGATGATTTGTTTAAAATG+AGG + chr2_2:14312762-14312781 Msa0239740:CDS 20.0%
!!! ATTTGTTTAAAATGAGGAAT+TGG + chr2_2:14312768-14312787 Msa0239740:CDS 20.0%
!! AATATTCAATATTTAATGGC+AGG + chr2_2:14313065-14313084 Msa0239740:intron 20.0%
!! ATATTCAATATTTAATGGCA+GGG + chr2_2:14313066-14313085 Msa0239740:intron 20.0%
!!! AATACATATATGTTTTTAGG+GGG + chr2_2:14313241-14313260 Msa0239740:intron 20.0%
!! AAAATGGAACTTAAATAACA+TGG - chr2_2:14313428-14313447 None:intergenic 20.0%
! CTAAATATAGTTCCAACTTT+AGG - chr2_2:14310966-14310985 None:intergenic 25.0%
! AGTAACAAAAATACAGATGA+TGG + chr2_2:14311056-14311075 Msa0239740:CDS 25.0%
! GTAACAAAAATACAGATGAT+GGG + chr2_2:14311057-14311076 Msa0239740:CDS 25.0%
! AATGCATGTATTTCTTTAGA+TGG + chr2_2:14311188-14311207 Msa0239740:CDS 25.0%
!! AAGCATAAATTTTCGATCAA+TGG + chr2_2:14311352-14311371 Msa0239740:CDS 25.0%
! GAAACTATATAGATAAAGTG+AGG + chr2_2:14311426-14311445 Msa0239740:CDS 25.0%
! TTTGTGGCATATAATGAAAA+AGG + chr2_2:14311883-14311902 Msa0239740:intron 25.0%
!! TTGAACTTCATGATAATGAA+TGG + chr2_2:14312029-14312048 Msa0239740:intron 25.0%
! TATTTGATGAAAGAAATCGT+TGG + chr2_2:14312062-14312081 Msa0239740:intron 25.0%
! ATTTGATGAAAGAAATCGTT+GGG + chr2_2:14312063-14312082 Msa0239740:intron 25.0%
! ATTGAGAGATAAAGTTGAAA+AGG + chr2_2:14312223-14312242 Msa0239740:CDS 25.0%
! TAAAGTTGAAAAGGAAAACA+AGG + chr2_2:14312232-14312251 Msa0239740:CDS 25.0%
!!! ATAGCTTGTATAAGTCATTT+TGG + chr2_2:14312281-14312300 Msa0239740:CDS 25.0%
!! TGTTGTTTGTTTCAATTCAA+AGG + chr2_2:14312521-14312540 Msa0239740:CDS 25.0%
! ATCAAAACCACATTTAACAA+GGG - chr2_2:14312657-14312676 None:intergenic 25.0%
!!! ACTCTGTTGACTTTTTTTTT+GGG - chr2_2:14312981-14313000 None:intergenic 25.0%
! TTCCTGTAACATTAATATTG+TGG + chr2_2:14313386-14313405 Msa0239740:three_prime_UTR 25.0%
! ATCCACAATATTAATGTTAC+AGG - chr2_2:14313391-14313410 None:intergenic 25.0%
! TTCATGACTTGAGAATAAAA+TGG - chr2_2:14313444-14313463 None:intergenic 25.0%
ATTTGTATCTTCTGATGAAG+AGG + chr2_2:14310872-14310891 Msa0239740:CDS 30.0%
GAAGATGAAAAACCTAAAGT+TGG + chr2_2:14310951-14310970 Msa0239740:CDS 30.0%
! GGGTTTTTGTTAAAGGATTT+GGG - chr2_2:14311151-14311170 None:intergenic 30.0%
! TGGGTTTTTGTTAAAGGATT+TGG - chr2_2:14311152-14311171 None:intergenic 30.0%
GGTTATGAGAATATGACATT+TGG + chr2_2:14311389-14311408 Msa0239740:CDS 30.0%
! GAATATGACATTTGGTGAAA+AGG + chr2_2:14311397-14311416 Msa0239740:CDS 30.0%
!!! TCGCTTACGAAATGTTTTTT+GGG + chr2_2:14311556-14311575 Msa0239740:intron 30.0%
! TGTTTGGAATAACCAAGTAA+AGG - chr2_2:14311753-14311772 None:intergenic 30.0%
TTACTTGGTTATTCCAAACA+TGG + chr2_2:14311753-14311772 Msa0239740:intron 30.0%
ATCCATGAAAAATGCAATTG+CGG + chr2_2:14311829-14311848 Msa0239740:intron 30.0%
! TGTTTTCATAGACTCGTAAT+TGG - chr2_2:14311933-14311952 None:intergenic 30.0%
TTTGAGTAAGAGTGATTTCA+TGG + chr2_2:14311979-14311998 Msa0239740:intron 30.0%
! TCATGATAATGAATGGTTGA+AGG + chr2_2:14312036-14312055 Msa0239740:intron 30.0%
! CATGATAATGAATGGTTGAA+GGG + chr2_2:14312037-14312056 Msa0239740:intron 30.0%
! ATGATAATGAATGGTTGAAG+GGG + chr2_2:14312038-14312057 Msa0239740:intron 30.0%
! ATATGAAAGAGACACGTTTT+GGG + chr2_2:14312093-14312112 Msa0239740:intron 30.0%
!!! GTATGAACTCGTTTTTTTGA+TGG + chr2_2:14312146-14312165 Msa0239740:intron 30.0%
! ATTCAAAGAATTTCAAGTGG+AGG + chr2_2:14312343-14312362 Msa0239740:CDS 30.0%
CTGTTAACTTAAGAACACAA+AGG - chr2_2:14312565-14312584 None:intergenic 30.0%
CTTTGTGTTCTTAAGTTAAC+AGG + chr2_2:14312563-14312582 Msa0239740:CDS 30.0%
TGAGAGAAAATATAAGAGGA+TGG - chr2_2:14312605-14312624 None:intergenic 30.0%
GATCAAAACCACATTTAACA+AGG - chr2_2:14312658-14312677 None:intergenic 30.0%
!!! TGTGGTTTTGATCATTTAGT+TGG + chr2_2:14312665-14312684 Msa0239740:CDS 30.0%
TAAAATGAGGAATTGGATCA+AGG + chr2_2:14312775-14312794 Msa0239740:CDS 30.0%
! TTAGAAGACTTCCTTTTTGA+AGG - chr2_2:14312920-14312939 None:intergenic 30.0%
!!! CACTCTGTTGACTTTTTTTT+TGG - chr2_2:14312982-14313001 None:intergenic 30.0%
CAAAAAAAAAGTCAACAGAG+TGG + chr2_2:14312980-14312999 Msa0239740:CDS 30.0%
!!! CAAATTAGTTTTGGGATGAA+TGG + chr2_2:14313266-14313285 Msa0239740:CDS 30.0%
! GGTATTGAATTTGGATTGAA+GGG - chr2_2:14313317-14313336 None:intergenic 30.0%
!! AGGTATTGAATTTGGATTGA+AGG - chr2_2:14313318-14313337 None:intergenic 30.0%
!! TCACTCATAGGTATTGAATT+TGG - chr2_2:14313326-14313345 None:intergenic 30.0%
TATTCTCAAGTCATGAATCA+TGG + chr2_2:14313447-14313466 Msa0239740:three_prime_UTR 30.0%
TTCCTATTTCGAATTGTTAC+AGG + chr2_2:14313473-14313492 Msa0239740:three_prime_UTR 30.0%
TACCTGTAACAATTCGAAAT+AGG - chr2_2:14313478-14313497 None:intergenic 30.0%
!! TGTCAGTTTGTTCTTTTTGT+AGG + chr2_2:14313562-14313581 Msa0239740:three_prime_UTR 30.0%
TGATGAAGAGGAAATCAAAG+AGG + chr2_2:14310884-14310903 Msa0239740:CDS 35.0%
GATGAAGAGGAAATCAAAGA+GGG + chr2_2:14310885-14310904 Msa0239740:CDS 35.0%
AAGAGTTATGCCCAATCTAT+GGG + chr2_2:14311014-14311033 Msa0239740:CDS 35.0%
AACTCCAAAACCCATAGATT+GGG - chr2_2:14311027-14311046 None:intergenic 35.0%
TAACTCCAAAACCCATAGAT+TGG - chr2_2:14311028-14311047 None:intergenic 35.0%
TGGATCAAAGTATGTGAGTA+AGG + chr2_2:14311109-14311128 Msa0239740:CDS 35.0%
! ATGCACTGGGTTTTTGTTAA+AGG - chr2_2:14311158-14311177 None:intergenic 35.0%
TTTAACAAAAACCCAGTGCA+TGG + chr2_2:14311157-14311176 Msa0239740:CDS 35.0%
TAAAATAGCGTGCTTTGTCA+GGG - chr2_2:14311262-14311281 None:intergenic 35.0%
! TTTTGGATCCTCGTTTGAAA+AGG + chr2_2:14311294-14311313 Msa0239740:CDS 35.0%
TTAGAACTCAATGATCAAGC+TGG + chr2_2:14311320-14311339 Msa0239740:CDS 35.0%
TCAATGGTTGTTGAAGCAAA+TGG + chr2_2:14311368-14311387 Msa0239740:CDS 35.0%
!!! GTCGCTTACGAAATGTTTTT+TGG + chr2_2:14311555-14311574 Msa0239740:intron 35.0%
! AGGGCTGCATATGAATATTT+TGG + chr2_2:14311593-14311612 Msa0239740:intron 35.0%
ATGGTTTACTCCAACAAATG+GGG - chr2_2:14311675-14311694 None:intergenic 35.0%
GATGGTTTACTCCAACAAAT+GGG - chr2_2:14311676-14311695 None:intergenic 35.0%
TGATGGTTTACTCCAACAAA+TGG - chr2_2:14311677-14311696 None:intergenic 35.0%
TTTGTTGGAGTAAACCATCA+TGG + chr2_2:14311677-14311696 Msa0239740:intron 35.0%
AGGATACTAAGTCCTTTACT+TGG + chr2_2:14311738-14311757 Msa0239740:intron 35.0%
TGATCGGTAATTATGGCATT+TGG - chr2_2:14311803-14311822 None:intergenic 35.0%
TCTGTCTTGATCGGTAATTA+TGG - chr2_2:14311810-14311829 None:intergenic 35.0%
TTTCATGGATCTGTCTTGAT+CGG - chr2_2:14311819-14311838 None:intergenic 35.0%
!! GAGTATCTACTTAGCTTTTC+TGG - chr2_2:14311911-14311930 None:intergenic 35.0%
AGAGTGATTTCATGGAAAAG+TGG + chr2_2:14311987-14312006 Msa0239740:intron 35.0%
GAGTGATTTCATGGAAAAGT+GGG + chr2_2:14311988-14312007 Msa0239740:intron 35.0%
! CATATGAAAGAGACACGTTT+TGG + chr2_2:14312092-14312111 Msa0239740:intron 35.0%
!! AAGGAAAACAAGGCTGATTT+TGG + chr2_2:14312242-14312261 Msa0239740:CDS 35.0%
!! TCATACTTGCTTTGAGAGAT+TGG + chr2_2:14312385-14312404 Msa0239740:CDS 35.0%
CCACTGAGAGAAAATATAAG+AGG - chr2_2:14312609-14312628 None:intergenic 35.0%
! CCTCTTATATTTTCTCTCAG+TGG + chr2_2:14312606-14312625 Msa0239740:CDS 35.0%
! CTTATATTTTCTCTCAGTGG+AGG + chr2_2:14312609-14312628 Msa0239740:CDS 35.0%
AGACATACCCTTGTTAAATG+TGG + chr2_2:14312647-14312666 Msa0239740:CDS 35.0%
! CTTTTATGAAGTTGCTTCTG+AGG + chr2_2:14312727-14312746 Msa0239740:CDS 35.0%
GTTCAAGTAGTTGATCTAGT+TGG + chr2_2:14313117-14313136 Msa0239740:CDS 35.0%
!! TAGGGGGAACAAATTAGTTT+TGG + chr2_2:14313257-14313276 Msa0239740:intron 35.0%
!!! AGGGGGAACAAATTAGTTTT+GGG + chr2_2:14313258-14313277 Msa0239740:intron 35.0%
ACCTATGAGTGAAGTAAATC+AGG + chr2_2:14313334-14313353 Msa0239740:CDS 35.0%
ACCTGATTTACTTCACTCAT+AGG - chr2_2:14313338-14313357 None:intergenic 35.0%
CAAGAGTTATGCCCAATCTA+TGG + chr2_2:14311013-14311032 Msa0239740:CDS 40.0%
! TATGCCCAATCTATGGGTTT+TGG + chr2_2:14311020-14311039 Msa0239740:CDS 40.0%
TTTACTCTAGCATGTAGTCG+TGG + chr2_2:14311089-14311108 Msa0239740:CDS 40.0%
ATTCAATCTAGCCATGCACT+GGG - chr2_2:14311171-14311190 None:intergenic 40.0%
CTAAAATAGCGTGCTTTGTC+AGG - chr2_2:14311263-14311282 None:intergenic 40.0%
! TCTAACCTCCTTTTCAAACG+AGG - chr2_2:14311305-14311324 None:intergenic 40.0%
! AGCCGCAATTGCATTTTTCA+TGG - chr2_2:14311834-14311853 None:intergenic 40.0%
AACGTGTCTCTTTCATATGC+AGG - chr2_2:14312091-14312110 None:intergenic 40.0%
! TTGCATTGGTGAATGCTTTC+TGG - chr2_2:14312322-14312341 None:intergenic 40.0%
!! ACTTGCTTTGAGAGATTGGA+AGG + chr2_2:14312389-14312408 Msa0239740:CDS 40.0%
CTCAAAGTCTTTCTCGTTGA+AGG - chr2_2:14312489-14312508 None:intergenic 40.0%
! TATTTTCTCTCAGTGGAGGA+AGG + chr2_2:14312613-14312632 Msa0239740:CDS 40.0%
CTTTACTTCGAGTCGGTATA+GGG - chr2_2:14312889-14312908 None:intergenic 40.0%
!! CTATACCGACTCGAAGTAAA+GGG + chr2_2:14312888-14312907 Msa0239740:CDS 40.0%
!! AAGGGTATCCTCCTTCAAAA+AGG + chr2_2:14312906-14312925 Msa0239740:CDS 40.0%
!! GAAGACTTCCTTTTTGAAGG+AGG - chr2_2:14312917-14312936 None:intergenic 40.0%
ACAGAGTGGAAATCAACAAG+AGG + chr2_2:14312994-14313013 Msa0239740:CDS 40.0%
CTTGTACTTTAGATGCACAC+AGG - chr2_2:14313092-14313111 None:intergenic 40.0%
!!! AGTTTTGGGATGAATGGACA+TGG + chr2_2:14313272-14313291 Msa0239740:CDS 40.0%
CATTCAATCTAGCCATGCAC+TGG - chr2_2:14311172-14311191 None:intergenic 45.0%
TGGATCCTCGTTTGAAAAGG+AGG + chr2_2:14311297-14311316 Msa0239740:CDS 45.0%
AAAGTGAGGAGACTACGACT+TGG + chr2_2:14311440-14311459 Msa0239740:CDS 45.0%
AAGTGAGGAGACTACGACTT+GGG + chr2_2:14311441-14311460 Msa0239740:CDS 45.0%
! ATGCCTTTTGCCCCATTTGT+TGG + chr2_2:14311662-14311681 Msa0239740:intron 45.0%
ACTCCAACAAATGGGGCAAA+AGG - chr2_2:14311668-14311687 None:intergenic 45.0%
! ACAACACAGATTGGCCATGA+TGG - chr2_2:14311694-14311713 None:intergenic 45.0%
TCATGGCCAATCTGTGTTGT+TGG + chr2_2:14311694-14311713 Msa0239740:intron 45.0%
! CATGGCCAATCTGTGTTGTT+GGG + chr2_2:14311695-14311714 Msa0239740:intron 45.0%
! CTGTGCTTTATTGTCGAAGG+AGG + chr2_2:14311718-14311737 Msa0239740:intron 45.0%
GCATGCACTCTAACCATGTT+TGG - chr2_2:14311769-14311788 None:intergenic 45.0%
ACATGGTTAGAGTGCATGCA+TGG + chr2_2:14311770-14311789 Msa0239740:intron 45.0%
! ACCATCGATGACGAGCTTTT+GGG - chr2_2:14311862-14311881 None:intergenic 45.0%
!! TGAAAGAGACACGTTTTGGG+CGG + chr2_2:14312096-14312115 Msa0239740:intron 45.0%
AACCATCTTCCACAATGCCA+GGG - chr2_2:14312835-14312854 None:intergenic 45.0%
CCTTTACTTCGAGTCGGTAT+AGG - chr2_2:14312890-14312909 None:intergenic 45.0%
!! CCTATACCGACTCGAAGTAA+AGG + chr2_2:14312887-14312906 Msa0239740:CDS 45.0%
GGATACCCTTTACTTCGAGT+CGG - chr2_2:14312896-14312915 None:intergenic 45.0%
! TTTGGGATGAATGGACATGG+TGG + chr2_2:14313275-14313294 Msa0239740:CDS 45.0%
AGTGAGGAGACTACGACTTG+GGG + chr2_2:14311442-14311461 Msa0239740:CDS 50.0%
TTTGGGCAGATGCGAGATGT+AGG + chr2_2:14311573-14311592 Msa0239740:intron 50.0%
TTGGGCAGATGCGAGATGTA+GGG + chr2_2:14311574-14311593 Msa0239740:intron 50.0%
CACAGCCCAACAACACAGAT+TGG - chr2_2:14311703-14311722 None:intergenic 50.0%
! GGGCTGTGCTTTATTGTCGA+AGG + chr2_2:14311715-14311734 Msa0239740:intron 50.0%
TCCCAAAAGCTCGTCATCGA+TGG + chr2_2:14311858-14311877 Msa0239740:intron 50.0%
! CACCATCGATGACGAGCTTT+TGG - chr2_2:14311863-14311882 None:intergenic 50.0%
CTCGTCATCGATGGTGTTTG+TGG + chr2_2:14311867-14311886 Msa0239740:intron 50.0%
!! GAAAGAGACACGTTTTGGGC+GGG + chr2_2:14312097-14312116 Msa0239740:intron 50.0%
!! ACCTCTAAAGAAGCATCCCC+TGG + chr2_2:14312815-14312834 Msa0239740:CDS 50.0%
ACCATCTTCCACAATGCCAG+GGG - chr2_2:14312834-14312853 None:intergenic 50.0%
GAACCATCTTCCACAATGCC+AGG - chr2_2:14312836-14312855 None:intergenic 50.0%
GCCAGGGGATGCTTCTTTAG+AGG - chr2_2:14312819-14312838 None:intergenic 55.0%
!! AGAAGCATCCCCTGGCATTG+TGG + chr2_2:14312823-14312842 Msa0239740:CDS 55.0%
TCCCCTGGCATTGTGGAAGA+TGG + chr2_2:14312830-14312849 Msa0239740:CDS 55.0%
! AGGAGACTACGACTTGGGGC+TGG + chr2_2:14311446-14311465 Msa0239740:CDS 60.0%
ACTTGGGGCTGGAGATGCTG+AGG + chr2_2:14311457-14311476 Msa0239740:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 14310864 14313607 14310864 ID=Msa0239740;Name=Msa0239740
chr2_2 mRNA 14310864 14313607 14310864 ID=Msa0239740-mRNA-1;Parent=Msa0239740;Name=Msa0239740-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.66|0.5|1|1|0.75|4|240|559
chr2_2 exon 14310864 14311532 14310864 ID=Msa0239740-mRNA-1:exon:5957;Parent=Msa0239740-mRNA-1
chr2_2 exon 14312185 14313015 14312185 ID=Msa0239740-mRNA-1:exon:5958;Parent=Msa0239740-mRNA-1
chr2_2 exon 14313087 14313158 14313087 ID=Msa0239740-mRNA-1:exon:5959;Parent=Msa0239740-mRNA-1
chr2_2 exon 14313260 14313607 14313260 ID=Msa0239740-mRNA-1:exon:5960;Parent=Msa0239740-mRNA-1
chr2_2 CDS 14310864 14311532 14310864 ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1
chr2_2 CDS 14312185 14313015 14312185 ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1
chr2_2 CDS 14313087 14313158 14313087 ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1
chr2_2 CDS 14313260 14313367 14313260 ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1
chr2_2 three_prime_UTR 14313368 14313607 14313368 ID=Msa0239740-mRNA-1:three_prime_utr;Parent=Msa0239740-mRNA-1
Gene Sequence

>Msa0239740

GAAGAAGTATTTGTATCTTCTGATGAAGAGGAAATCAAAGAGGGAAATAATAGTTTTGATGATAGTTTAGAAGAAGATATTGTTCATGAAGATGAAAAACCTAAAGTTGGAACTATATTTAGCTCTAAAGATGAACTTTTTGAGTATTACAAGAGTTATGCCCAATCTATGGGTTTTGGAGTTACTAAACTTAGTAACAAAAATACAGATGATGGGAAAAAATACTTTACTCTAGCATGTAGTCGTGGATCAAAGTATGTGAGTAAGGTGAAGAAGCTTTTGAACCCAAATCCTTTAACAAAAACCCAGTGCATGGCTAGATTGAATGCATGTATTTCTTTAGATGGAACAGTTACTATTACAAAACTTTTTCTTGAGCATAATCATGATCTAATCCCTGACAAAGCACGCTATTTTAGAAGTAGTAAGTTTTTGGATCCTCGTTTGAAAAGGAGGTTAGAACTCAATGATCAAGCTGGAATAAATGTAAGCATAAATTTTCGATCAATGGTTGTTGAAGCAAATGGTTATGAGAATATGACATTTGGTGAAAAGGACTGTAGAAACTATATAGATAAAGTGAGGAGACTACGACTTGGGGCTGGAGATGCTGAGGCTATTCAAAATTATTTCGTTAAAATGCAAAAGCAAAATAGTCAGTTCTATTATACAACATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAGAGATAAAGTTGAAAAGGAAAACAAGGCTGATTTTGGTTCATTTAATACAGTGATAGCTTGTATAAGTCATTTTGGCTTTGAGTTGCAATTCCAGAAAGCATTCACCAATGCAAAATTCAAAGAATTTCAAGTGGAGGTTGCTTCTATGATTTACTGTCATACTTGCTTTGAGAGATTGGAAGGATCAAATTCTATATATTCTGTTATAGAGAGCAAGAAAAACTTTGACATAATTAAAGATATAGTGTTTGAGGTATCCTTCAACGAGAAAGACTTTGAGTTACATTGTATGTGTTGTTTGTTTCAATTCAAAGGTATTTTATGTAGGCACATCCTTTGTGTTCTTAAGTTAACAGGAAAAACAGAGTCATTGCCATCCTCTTATATTTTCTCTCAGTGGAGGAAGGATATAAGACGAAGACATACCCTTGTTAAATGTGGTTTTGATCATTTAGTTGGAAATGCTAAATTGCAAAGAGTTGATAAAGCGTGTGCTGACTTTTATGAAGTTGCTTCTGAGGTGATTAATACCGATGATGATTTGTTTAAAATGAGGAATTGGATCAAGGAAGTAAAAAATGAGTTTACCTCTAAAGAAGCATCCCCTGGCATTGTGGAAGATGGTTCAATTCAAAATCAAGTGATTAAAATTCTTGACCCTATACCGACTCGAAGTAAAGGGTATCCTCCTTCAAAAAGGAAGTCTTCTAAAGTTGATCAAATTGTGAAGAAAATTTCAAAAAAGAAGACCCAAAAAAAAAGTCAACAGAGTGGAAATCAACAAGAGGGCCTGTGTGCATCTAAAGTACAAGAGAGTGTTCAAGTAGTTGATCTAGTTGGCACACAAGAGAGTGTTCAAGGGGAACAAATTAGTTTTGGGATGAATGGACATGGTGGTGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACCTATGAGTGAAGTAAATCAGGTGCAAGCATAA

Protein sequence

>Msa0239740

EEVFVSSDEEEIKEGNNSFDDSLEEDIVHEDEKPKVGTIFSSKDELFEYYKSYAQSMGFGVTKLSNKNTDDGKKYFTLACSRGSKYVSKVKKLLNPNPLTKTQCMARLNACISLDGTVTITKLFLEHNHDLIPDKARYFRSSKFLDPRLKRRLELNDQAGINVSINFRSMVVEANGYENMTFGEKDCRNYIDKVRRLRLGAGDAEAIQNYFVKMQKQNSQFYYTTLKQFVEQYDNALRDKVEKENKADFGSFNTVIACISHFGFELQFQKAFTNAKFKEFQVEVASMIYCHTCFERLEGSNSIYSVIESKKNFDIIKDIVFEVSFNEKDFELHCMCCLFQFKGILCRHILCVLKLTGKTESLPSSYIFSQWRKDIRRRHTLVKCGFDHLVGNAKLQRVDKACADFYEVASEVINTDDDLFKMRNWIKEVKNEFTSKEASPGIVEDGSIQNQVIKILDPIPTRSKGYPPSKRKSSKVDQIVKKISKKKTQKKSQQSGNQQEGLCASKVQESVQVVDLVGTQESVQGEQISFGMNGHGGVNNLAPFNPNSIPMSEVNQVQA*