Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0239740 | GAU40839.1 | 62.139 | 346 | 105 | 5 | 224 | 557 | 469 | 800 | 1.11e-134 | 422 |
Msa0239740 | GAU40839.1 | 65.022 | 223 | 76 | 1 | 1 | 223 | 31 | 251 | 4.47e-92 | 310 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0239740 | sp|Q9SWG3|FAR1_ARATH | 27.193 | 342 | 198 | 11 | 225 | 543 | 465 | 778 | 1.67e-22 | 105 |
Msa0239740 | sp|Q9SWG3|FAR1_ARATH | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.56e-15 | 81.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0239740 | A0A2Z6P9Q3 | 62.139 | 346 | 105 | 5 | 224 | 557 | 469 | 800 | 5.32e-135 | 422 |
Msa0239740 | A0A2Z6P9Q3 | 65.022 | 223 | 76 | 1 | 1 | 223 | 31 | 251 | 2.13e-92 | 310 |
Gene ID | Type | Classification |
---|---|---|
Msa0239740 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0239740 | MtrunA17_Chr6g0477261 | 59.718 | 355 | 120 | 5 | 224 | 556 | 293 | 646 | 7.65e-134 | 404 |
Msa0239740 | MtrunA17_Chr6g0477261 | 86.842 | 76 | 10 | 0 | 149 | 224 | 1 | 76 | 5.14e-36 | 142 |
Msa0239740 | MtrunA17_Chr2g0296781 | 64.537 | 313 | 98 | 4 | 224 | 524 | 404 | 715 | 3.75e-125 | 384 |
Msa0239740 | MtrunA17_Chr2g0296781 | 74.054 | 185 | 48 | 0 | 40 | 224 | 3 | 187 | 1.94e-90 | 293 |
Msa0239740 | MtrunA17_Chr1g0196541 | 61.092 | 293 | 102 | 5 | 224 | 510 | 404 | 690 | 6.92e-104 | 328 |
Msa0239740 | MtrunA17_Chr1g0196541 | 56.284 | 183 | 80 | 0 | 40 | 222 | 3 | 185 | 3.44e-61 | 215 |
Msa0239740 | MtrunA17_Chr6g0476441 | 50.352 | 284 | 98 | 5 | 316 | 557 | 1 | 283 | 4.33e-75 | 240 |
Msa0239740 | MtrunA17_Chr5g0441581 | 36.260 | 262 | 155 | 6 | 224 | 478 | 432 | 688 | 7.37e-39 | 151 |
Msa0239740 | MtrunA17_Chr5g0441581 | 35.238 | 210 | 120 | 5 | 20 | 223 | 15 | 214 | 1.06e-26 | 114 |
Msa0239740 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 40 | 125 | 3 | 88 | 1.99e-31 | 117 |
Msa0239740 | MtrunA17_Chr3g0080351 | 30.693 | 202 | 125 | 5 | 201 | 402 | 460 | 646 | 1.82e-21 | 99.0 |
Msa0239740 | MtrunA17_Chr2g0291581 | 36.313 | 179 | 100 | 6 | 204 | 377 | 453 | 622 | 3.62e-21 | 97.8 |
Msa0239740 | MtrunA17_Chr2g0291581 | 28.125 | 224 | 147 | 6 | 34 | 256 | 71 | 281 | 3.27e-13 | 72.4 |
Msa0239740 | MtrunA17_Chr1g0207551 | 38.961 | 154 | 87 | 2 | 225 | 378 | 445 | 591 | 5.12e-21 | 97.4 |
Msa0239740 | MtrunA17_Chr1g0207551 | 25.316 | 237 | 157 | 5 | 31 | 257 | 31 | 257 | 8.92e-13 | 71.2 |
Msa0239740 | MtrunA17_Chr6g0451441 | 32.000 | 200 | 126 | 5 | 2 | 195 | 52 | 247 | 3.19e-20 | 94.0 |
Msa0239740 | MtrunA17_Chr5g0440451 | 31.579 | 190 | 122 | 5 | 223 | 411 | 457 | 639 | 5.16e-19 | 91.3 |
Msa0239740 | MtrunA17_Chr2g0329031 | 28.340 | 247 | 144 | 7 | 40 | 278 | 20 | 241 | 1.38e-18 | 89.7 |
Msa0239740 | MtrunA17_Chr2g0329031 | 31.646 | 158 | 100 | 3 | 224 | 381 | 417 | 566 | 7.75e-17 | 84.0 |
Msa0239740 | MtrunA17_Chr7g0258861 | 25.692 | 253 | 166 | 7 | 31 | 268 | 7 | 252 | 2.51e-16 | 80.1 |
Msa0239740 | MtrunA17_Chr2g0291591 | 26.407 | 231 | 156 | 7 | 33 | 257 | 63 | 285 | 7.45e-16 | 80.5 |
Msa0239740 | MtrunA17_Chr3g0118611 | 31.034 | 174 | 107 | 5 | 225 | 397 | 356 | 517 | 2.02e-15 | 79.7 |
Msa0239740 | MtrunA17_Chr1g0172041 | 31.818 | 110 | 74 | 1 | 290 | 399 | 3 | 111 | 5.08e-15 | 71.6 |
Msa0239740 | MtrunA17_Chr5g0448761 | 30.065 | 153 | 101 | 2 | 224 | 376 | 479 | 625 | 1.02e-14 | 77.4 |
Msa0239740 | MtrunA17_Chr5g0448761 | 26.961 | 204 | 137 | 7 | 31 | 224 | 57 | 258 | 1.82e-11 | 67.0 |
Msa0239740 | MtrunA17_Chr8g0363841 | 27.941 | 204 | 139 | 4 | 30 | 225 | 10 | 213 | 5.52e-14 | 75.1 |
Msa0239740 | MtrunA17_Chr2g0324011 | 24.514 | 257 | 179 | 7 | 31 | 276 | 7 | 259 | 2.51e-13 | 72.8 |
Msa0239740 | MtrunA17_Chr5g0448511 | 32.215 | 149 | 93 | 4 | 224 | 371 | 251 | 392 | 1.19e-12 | 70.5 |
Msa0239740 | MtrunA17_Chr3g0077731 | 45.370 | 108 | 46 | 4 | 429 | 524 | 1 | 107 | 4.97e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0239740 | AT4G15090.1 | 27.193 | 342 | 198 | 11 | 225 | 543 | 465 | 778 | 1.70e-23 | 105 |
Msa0239740 | AT4G15090.1 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
Msa0239740 | AT4G15090.5 | 27.193 | 342 | 198 | 11 | 225 | 543 | 465 | 778 | 1.70e-23 | 105 |
Msa0239740 | AT4G15090.5 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
Msa0239740 | AT4G15090.3 | 27.193 | 342 | 198 | 11 | 225 | 543 | 465 | 778 | 1.70e-23 | 105 |
Msa0239740 | AT4G15090.3 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
Msa0239740 | AT4G15090.2 | 27.193 | 342 | 198 | 11 | 225 | 543 | 465 | 778 | 1.70e-23 | 105 |
Msa0239740 | AT4G15090.2 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
Msa0239740 | AT4G15090.4 | 27.193 | 342 | 198 | 11 | 225 | 543 | 465 | 778 | 1.70e-23 | 105 |
Msa0239740 | AT4G15090.4 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
Msa0239740 | AT3G22170.2 | 36.723 | 177 | 98 | 4 | 204 | 379 | 458 | 621 | 2.01e-23 | 105 |
Msa0239740 | AT3G22170.1 | 36.723 | 177 | 98 | 4 | 204 | 379 | 458 | 621 | 2.01e-23 | 105 |
Msa0239740 | AT1G76320.2 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.18e-21 | 99.0 |
Msa0239740 | AT1G76320.2 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 2.20e-19 | 92.4 |
Msa0239740 | AT1G76320.1 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.23e-21 | 99.0 |
Msa0239740 | AT1G76320.1 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 2.09e-19 | 92.8 |
Msa0239740 | AT1G76320.4 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.23e-21 | 99.0 |
Msa0239740 | AT1G76320.4 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 2.09e-19 | 92.8 |
Msa0239740 | AT1G76320.3 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.56e-21 | 98.6 |
Msa0239740 | AT1G76320.3 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 3.19e-19 | 92.0 |
Msa0239740 | AT1G52520.1 | 33.962 | 212 | 121 | 7 | 224 | 418 | 484 | 693 | 8.94e-21 | 97.1 |
Msa0239740 | AT4G19990.3 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.66e-15 | 80.5 |
Msa0239740 | AT4G19990.4 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.66e-15 | 80.5 |
Msa0239740 | AT4G19990.5 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.84e-15 | 80.1 |
Msa0239740 | AT4G19990.1 | 33.333 | 183 | 107 | 5 | 224 | 402 | 355 | 526 | 1.91e-15 | 80.1 |
Msa0239740 | AT4G19990.6 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.92e-15 | 80.1 |
Msa0239740 | AT4G19990.2 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.92e-15 | 80.1 |
Msa0239740 | AT4G19990.7 | 33.333 | 183 | 107 | 5 | 224 | 402 | 426 | 597 | 2.37e-15 | 79.7 |
Msa0239740 | AT1G80010.1 | 30.769 | 156 | 103 | 4 | 224 | 377 | 510 | 662 | 1.83e-14 | 77.0 |
Msa0239740 | AT2G32250.2 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.62e-14 | 76.6 |
Msa0239740 | AT2G32250.4 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.62e-14 | 76.6 |
Msa0239740 | AT2G32250.5 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.63e-14 | 76.6 |
Msa0239740 | AT2G32250.8 | 30.921 | 152 | 94 | 3 | 224 | 373 | 367 | 509 | 2.63e-14 | 76.6 |
Msa0239740 | AT2G32250.7 | 30.921 | 152 | 94 | 3 | 224 | 373 | 367 | 509 | 2.78e-14 | 76.6 |
Msa0239740 | AT2G32250.6 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.84e-14 | 76.6 |
Msa0239740 | AT2G32250.1 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.84e-14 | 76.6 |
Msa0239740 | AT2G32250.3 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.84e-14 | 76.6 |
Msa0239740 | AT4G38180.1 | 29.936 | 157 | 96 | 3 | 224 | 376 | 488 | 634 | 2.29e-13 | 73.6 |
Msa0239740 | AT4G38180.1 | 24.664 | 223 | 157 | 6 | 12 | 225 | 51 | 271 | 4.93e-11 | 66.2 |
Msa0239740 | AT4G38170.1 | 29.936 | 157 | 104 | 3 | 224 | 380 | 253 | 403 | 2.43e-13 | 73.2 |
Msa0239740 | AT2G27110.2 | 30.968 | 155 | 97 | 6 | 224 | 376 | 433 | 579 | 8.53e-12 | 68.6 |
Msa0239740 | AT2G27110.1 | 30.968 | 155 | 97 | 6 | 224 | 376 | 433 | 579 | 8.53e-12 | 68.6 |
Find 79 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 2_2:-14312319 | None:intergenic |
TCACTCATAGGTATTGAATT+TGG | 0.197997 | 2_2:-14313323 | None:intergenic |
AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 2_2:+14312242 | Msa0239740:CDS |
CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 2_2:+14311013 | Msa0239740:CDS |
ATAGCTTGTATAAGTCATTT+TGG | 0.245260 | 2_2:+14312281 | Msa0239740:CDS |
AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 2_2:+14311188 | Msa0239740:CDS |
CTAAATATAGTTCCAACTTT+AGG | 0.250578 | 2_2:-14310963 | None:intergenic |
ATCCACAATATTAATGTTAC+AGG | 0.261830 | 2_2:-14313388 | None:intergenic |
CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | 2_2:+14312563 | Msa0239740:CDS |
CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 2_2:-14311260 | None:intergenic |
CCTTTACTTCGAGTCGGTAT+AGG | 0.279664 | 2_2:-14312887 | None:intergenic |
TTCCTATTTCGAATTGTTAC+AGG | 0.287780 | 2_2:+14313473 | Msa0239740:three_prime_UTR |
TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 2_2:+14311020 | Msa0239740:CDS |
ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | 2_2:+14312768 | Msa0239740:CDS |
CTCAAAGTCTTTCTCGTTGA+AGG | 0.350216 | 2_2:-14312486 | None:intergenic |
TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | 2_2:+14312385 | Msa0239740:CDS |
GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | 2_2:-14312816 | None:intergenic |
CTTTACTTCGAGTCGGTATA+GGG | 0.375423 | 2_2:-14312886 | None:intergenic |
TACCTGTAACAATTCGAAAT+AGG | 0.377069 | 2_2:-14313475 | None:intergenic |
AAGGGTATCCTCCTTCAAAA+AGG | 0.379154 | 2_2:+14312906 | Msa0239740:CDS |
TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 2_2:-14313441 | None:intergenic |
ACCTATGAGTGAAGTAAATC+AGG | 0.391661 | 2_2:+14313334 | Msa0239740:CDS |
TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 2_2:-14311025 | None:intergenic |
AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 2_2:+14311441 | Msa0239740:CDS |
ACCTGATTTACTTCACTCAT+AGG | 0.422951 | 2_2:-14313335 | None:intergenic |
AATTAAAGATATAGTGTTTG+AGG | 0.424835 | 2_2:+14312460 | Msa0239740:CDS |
TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 2_2:+14313447 | Msa0239740:three_prime_UTR |
AGGTATTGAATTTGGATTGA+AGG | 0.452798 | 2_2:-14313315 | None:intergenic |
AACTCCAAAACCCATAGATT+GGG | 0.455626 | 2_2:-14311024 | None:intergenic |
GAATATGACATTTGGTGAAA+AGG | 0.456326 | 2_2:+14311397 | Msa0239740:CDS |
ATGATGATTTGTTTAAAATG+AGG | 0.460118 | 2_2:+14312762 | Msa0239740:CDS |
TAAAATGAGGAATTGGATCA+AGG | 0.463705 | 2_2:+14312775 | Msa0239740:CDS |
GAACCATCTTCCACAATGCC+AGG | 0.467359 | 2_2:-14312833 | None:intergenic |
ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 2_2:+14312223 | Msa0239740:CDS |
TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 2_2:+14312521 | Msa0239740:CDS |
TTCCTGTAACATTAATATTG+TGG | 0.477639 | 2_2:+14313386 | Msa0239740:three_prime_UTR |
CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 2_2:-14312606 | None:intergenic |
GTTCAAGTAGTTGATCTAGT+TGG | 0.480957 | 2_2:+14313117 | Msa0239740:CDS |
GGTTATGAGAATATGACATT+TGG | 0.482364 | 2_2:+14311389 | Msa0239740:CDS |
GGTATTGAATTTGGATTGAA+GGG | 0.485774 | 2_2:-14313314 | None:intergenic |
CATTCAATCTAGCCATGCAC+TGG | 0.485895 | 2_2:-14311169 | None:intergenic |
CCTATACCGACTCGAAGTAA+AGG | 0.486452 | 2_2:+14312887 | Msa0239740:CDS |
CTATACCGACTCGAAGTAAA+GGG | 0.490008 | 2_2:+14312888 | Msa0239740:CDS |
TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | 2_2:+14311368 | Msa0239740:CDS |
TGGATCAAAGTATGTGAGTA+AGG | 0.495408 | 2_2:+14311109 | Msa0239740:CDS |
TCCCCTGGCATTGTGGAAGA+TGG | 0.500694 | 2_2:+14312830 | Msa0239740:CDS |
AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 2_2:+14311014 | Msa0239740:CDS |
ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | 2_2:+14312815 | Msa0239740:CDS |
AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 2_2:+14311446 | Msa0239740:CDS |
ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | 2_2:+14312389 | Msa0239740:CDS |
ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 2_2:+14310872 | Msa0239740:CDS |
TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 2_2:+14311297 | Msa0239740:CDS |
ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 2_2:+14312343 | Msa0239740:CDS |
TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 2_2:-14311259 | None:intergenic |
TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 2_2:+14311320 | Msa0239740:CDS |
GAAACTATATAGATAAAGTG+AGG | 0.579861 | 2_2:+14311426 | Msa0239740:CDS |
TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 2_2:-14312602 | None:intergenic |
AGACATACCCTTGTTAAATG+TGG | 0.581997 | 2_2:+14312647 | Msa0239740:CDS |
AACCATCTTCCACAATGCCA+GGG | 0.582504 | 2_2:-14312832 | None:intergenic |
AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 2_2:+14312823 | Msa0239740:CDS |
ATTCAATCTAGCCATGCACT+GGG | 0.603564 | 2_2:-14311168 | None:intergenic |
GATGAAGAGGAAATCAAAGA+GGG | 0.610064 | 2_2:+14310885 | Msa0239740:CDS |
GATCAAAACCACATTTAACA+AGG | 0.611615 | 2_2:-14312655 | None:intergenic |
TGATGAAGAGGAAATCAAAG+AGG | 0.613658 | 2_2:+14310884 | Msa0239740:CDS |
AAAATGGAACTTAAATAACA+TGG | 0.614120 | 2_2:-14313425 | None:intergenic |
TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 2_2:+14312232 | Msa0239740:CDS |
GGATACCCTTTACTTCGAGT+CGG | 0.640214 | 2_2:-14312893 | None:intergenic |
AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 2_2:+14311442 | Msa0239740:CDS |
AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 2_2:+14312340 | Msa0239740:CDS |
ATCAAAACCACATTTAACAA+GGG | 0.648419 | 2_2:-14312654 | None:intergenic |
AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 2_2:+14311440 | Msa0239740:CDS |
ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 2_2:+14311457 | Msa0239740:CDS |
TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 2_2:+14311089 | Msa0239740:CDS |
ACCATCTTCCACAATGCCAG+GGG | 0.656502 | 2_2:-14312831 | None:intergenic |
ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 2_2:+14312994 | Msa0239740:CDS |
CTGTTAACTTAAGAACACAA+AGG | 0.666537 | 2_2:-14312562 | None:intergenic |
CTTGTACTTTAGATGCACAC+AGG | 0.674948 | 2_2:-14313089 | None:intergenic |
TTTGGGATGAATGGACATGG+TGG | 0.686298 | 2_2:+14313275 | Msa0239740:CDS |
ACGACAACGGATCATTCACA+TGG | 0.717284 | 2_2:-14313592 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATACATATATGTTTTT+AGG | + | chr2_2:14313238-14313257 | Msa0239740:intron | 10.0% |
!!! | TTAATACATATATGTTTTTA+GGG | + | chr2_2:14313239-14313258 | Msa0239740:intron | 10.0% |
!! | GTCTAATATTCAATATTTAA+TGG | + | chr2_2:14313061-14313080 | Msa0239740:intron | 15.0% |
!!! | TAATACATATATGTTTTTAG+GGG | + | chr2_2:14313240-14313259 | Msa0239740:intron | 15.0% |
!!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | chr2_2:14311277-14311296 | Msa0239740:CDS | 20.0% |
!!! | AAATTCTTTGAATTTTGCAT+TGG | - | chr2_2:14312336-14312355 | None:intergenic | 20.0% |
!! | AAAATTCAAAGAATTTCAAG+TGG | + | chr2_2:14312340-14312359 | Msa0239740:CDS | 20.0% |
!! | AATTAAAGATATAGTGTTTG+AGG | + | chr2_2:14312460-14312479 | Msa0239740:CDS | 20.0% |
!!! | AATTCAAAGGTATTTTATGT+AGG | + | chr2_2:14312534-14312553 | Msa0239740:CDS | 20.0% |
!!! | CATTTTAAACAAATCATCAT+CGG | - | chr2_2:14312762-14312781 | None:intergenic | 20.0% |
!!! | ATGATGATTTGTTTAAAATG+AGG | + | chr2_2:14312762-14312781 | Msa0239740:CDS | 20.0% |
!!! | ATTTGTTTAAAATGAGGAAT+TGG | + | chr2_2:14312768-14312787 | Msa0239740:CDS | 20.0% |
!! | AATATTCAATATTTAATGGC+AGG | + | chr2_2:14313065-14313084 | Msa0239740:intron | 20.0% |
!! | ATATTCAATATTTAATGGCA+GGG | + | chr2_2:14313066-14313085 | Msa0239740:intron | 20.0% |
!!! | AATACATATATGTTTTTAGG+GGG | + | chr2_2:14313241-14313260 | Msa0239740:intron | 20.0% |
!! | AAAATGGAACTTAAATAACA+TGG | - | chr2_2:14313428-14313447 | None:intergenic | 20.0% |
! | CTAAATATAGTTCCAACTTT+AGG | - | chr2_2:14310966-14310985 | None:intergenic | 25.0% |
! | AGTAACAAAAATACAGATGA+TGG | + | chr2_2:14311056-14311075 | Msa0239740:CDS | 25.0% |
! | GTAACAAAAATACAGATGAT+GGG | + | chr2_2:14311057-14311076 | Msa0239740:CDS | 25.0% |
! | AATGCATGTATTTCTTTAGA+TGG | + | chr2_2:14311188-14311207 | Msa0239740:CDS | 25.0% |
!! | AAGCATAAATTTTCGATCAA+TGG | + | chr2_2:14311352-14311371 | Msa0239740:CDS | 25.0% |
! | GAAACTATATAGATAAAGTG+AGG | + | chr2_2:14311426-14311445 | Msa0239740:CDS | 25.0% |
! | TTTGTGGCATATAATGAAAA+AGG | + | chr2_2:14311883-14311902 | Msa0239740:intron | 25.0% |
!! | TTGAACTTCATGATAATGAA+TGG | + | chr2_2:14312029-14312048 | Msa0239740:intron | 25.0% |
! | TATTTGATGAAAGAAATCGT+TGG | + | chr2_2:14312062-14312081 | Msa0239740:intron | 25.0% |
! | ATTTGATGAAAGAAATCGTT+GGG | + | chr2_2:14312063-14312082 | Msa0239740:intron | 25.0% |
! | ATTGAGAGATAAAGTTGAAA+AGG | + | chr2_2:14312223-14312242 | Msa0239740:CDS | 25.0% |
! | TAAAGTTGAAAAGGAAAACA+AGG | + | chr2_2:14312232-14312251 | Msa0239740:CDS | 25.0% |
!!! | ATAGCTTGTATAAGTCATTT+TGG | + | chr2_2:14312281-14312300 | Msa0239740:CDS | 25.0% |
!! | TGTTGTTTGTTTCAATTCAA+AGG | + | chr2_2:14312521-14312540 | Msa0239740:CDS | 25.0% |
! | ATCAAAACCACATTTAACAA+GGG | - | chr2_2:14312657-14312676 | None:intergenic | 25.0% |
!!! | ACTCTGTTGACTTTTTTTTT+GGG | - | chr2_2:14312981-14313000 | None:intergenic | 25.0% |
! | TTCCTGTAACATTAATATTG+TGG | + | chr2_2:14313386-14313405 | Msa0239740:three_prime_UTR | 25.0% |
! | ATCCACAATATTAATGTTAC+AGG | - | chr2_2:14313391-14313410 | None:intergenic | 25.0% |
! | TTCATGACTTGAGAATAAAA+TGG | - | chr2_2:14313444-14313463 | None:intergenic | 25.0% |
ATTTGTATCTTCTGATGAAG+AGG | + | chr2_2:14310872-14310891 | Msa0239740:CDS | 30.0% | |
GAAGATGAAAAACCTAAAGT+TGG | + | chr2_2:14310951-14310970 | Msa0239740:CDS | 30.0% | |
! | GGGTTTTTGTTAAAGGATTT+GGG | - | chr2_2:14311151-14311170 | None:intergenic | 30.0% |
! | TGGGTTTTTGTTAAAGGATT+TGG | - | chr2_2:14311152-14311171 | None:intergenic | 30.0% |
GGTTATGAGAATATGACATT+TGG | + | chr2_2:14311389-14311408 | Msa0239740:CDS | 30.0% | |
! | GAATATGACATTTGGTGAAA+AGG | + | chr2_2:14311397-14311416 | Msa0239740:CDS | 30.0% |
!!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr2_2:14311556-14311575 | Msa0239740:intron | 30.0% |
! | TGTTTGGAATAACCAAGTAA+AGG | - | chr2_2:14311753-14311772 | None:intergenic | 30.0% |
TTACTTGGTTATTCCAAACA+TGG | + | chr2_2:14311753-14311772 | Msa0239740:intron | 30.0% | |
ATCCATGAAAAATGCAATTG+CGG | + | chr2_2:14311829-14311848 | Msa0239740:intron | 30.0% | |
! | TGTTTTCATAGACTCGTAAT+TGG | - | chr2_2:14311933-14311952 | None:intergenic | 30.0% |
TTTGAGTAAGAGTGATTTCA+TGG | + | chr2_2:14311979-14311998 | Msa0239740:intron | 30.0% | |
! | TCATGATAATGAATGGTTGA+AGG | + | chr2_2:14312036-14312055 | Msa0239740:intron | 30.0% |
! | CATGATAATGAATGGTTGAA+GGG | + | chr2_2:14312037-14312056 | Msa0239740:intron | 30.0% |
! | ATGATAATGAATGGTTGAAG+GGG | + | chr2_2:14312038-14312057 | Msa0239740:intron | 30.0% |
! | ATATGAAAGAGACACGTTTT+GGG | + | chr2_2:14312093-14312112 | Msa0239740:intron | 30.0% |
!!! | GTATGAACTCGTTTTTTTGA+TGG | + | chr2_2:14312146-14312165 | Msa0239740:intron | 30.0% |
! | ATTCAAAGAATTTCAAGTGG+AGG | + | chr2_2:14312343-14312362 | Msa0239740:CDS | 30.0% |
CTGTTAACTTAAGAACACAA+AGG | - | chr2_2:14312565-14312584 | None:intergenic | 30.0% | |
CTTTGTGTTCTTAAGTTAAC+AGG | + | chr2_2:14312563-14312582 | Msa0239740:CDS | 30.0% | |
TGAGAGAAAATATAAGAGGA+TGG | - | chr2_2:14312605-14312624 | None:intergenic | 30.0% | |
GATCAAAACCACATTTAACA+AGG | - | chr2_2:14312658-14312677 | None:intergenic | 30.0% | |
!!! | TGTGGTTTTGATCATTTAGT+TGG | + | chr2_2:14312665-14312684 | Msa0239740:CDS | 30.0% |
TAAAATGAGGAATTGGATCA+AGG | + | chr2_2:14312775-14312794 | Msa0239740:CDS | 30.0% | |
! | TTAGAAGACTTCCTTTTTGA+AGG | - | chr2_2:14312920-14312939 | None:intergenic | 30.0% |
!!! | CACTCTGTTGACTTTTTTTT+TGG | - | chr2_2:14312982-14313001 | None:intergenic | 30.0% |
CAAAAAAAAAGTCAACAGAG+TGG | + | chr2_2:14312980-14312999 | Msa0239740:CDS | 30.0% | |
!!! | CAAATTAGTTTTGGGATGAA+TGG | + | chr2_2:14313266-14313285 | Msa0239740:CDS | 30.0% |
! | GGTATTGAATTTGGATTGAA+GGG | - | chr2_2:14313317-14313336 | None:intergenic | 30.0% |
!! | AGGTATTGAATTTGGATTGA+AGG | - | chr2_2:14313318-14313337 | None:intergenic | 30.0% |
!! | TCACTCATAGGTATTGAATT+TGG | - | chr2_2:14313326-14313345 | None:intergenic | 30.0% |
TATTCTCAAGTCATGAATCA+TGG | + | chr2_2:14313447-14313466 | Msa0239740:three_prime_UTR | 30.0% | |
TTCCTATTTCGAATTGTTAC+AGG | + | chr2_2:14313473-14313492 | Msa0239740:three_prime_UTR | 30.0% | |
TACCTGTAACAATTCGAAAT+AGG | - | chr2_2:14313478-14313497 | None:intergenic | 30.0% | |
!! | TGTCAGTTTGTTCTTTTTGT+AGG | + | chr2_2:14313562-14313581 | Msa0239740:three_prime_UTR | 30.0% |
TGATGAAGAGGAAATCAAAG+AGG | + | chr2_2:14310884-14310903 | Msa0239740:CDS | 35.0% | |
GATGAAGAGGAAATCAAAGA+GGG | + | chr2_2:14310885-14310904 | Msa0239740:CDS | 35.0% | |
AAGAGTTATGCCCAATCTAT+GGG | + | chr2_2:14311014-14311033 | Msa0239740:CDS | 35.0% | |
AACTCCAAAACCCATAGATT+GGG | - | chr2_2:14311027-14311046 | None:intergenic | 35.0% | |
TAACTCCAAAACCCATAGAT+TGG | - | chr2_2:14311028-14311047 | None:intergenic | 35.0% | |
TGGATCAAAGTATGTGAGTA+AGG | + | chr2_2:14311109-14311128 | Msa0239740:CDS | 35.0% | |
! | ATGCACTGGGTTTTTGTTAA+AGG | - | chr2_2:14311158-14311177 | None:intergenic | 35.0% |
TTTAACAAAAACCCAGTGCA+TGG | + | chr2_2:14311157-14311176 | Msa0239740:CDS | 35.0% | |
TAAAATAGCGTGCTTTGTCA+GGG | - | chr2_2:14311262-14311281 | None:intergenic | 35.0% | |
! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr2_2:14311294-14311313 | Msa0239740:CDS | 35.0% |
TTAGAACTCAATGATCAAGC+TGG | + | chr2_2:14311320-14311339 | Msa0239740:CDS | 35.0% | |
TCAATGGTTGTTGAAGCAAA+TGG | + | chr2_2:14311368-14311387 | Msa0239740:CDS | 35.0% | |
!!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr2_2:14311555-14311574 | Msa0239740:intron | 35.0% |
! | AGGGCTGCATATGAATATTT+TGG | + | chr2_2:14311593-14311612 | Msa0239740:intron | 35.0% |
ATGGTTTACTCCAACAAATG+GGG | - | chr2_2:14311675-14311694 | None:intergenic | 35.0% | |
GATGGTTTACTCCAACAAAT+GGG | - | chr2_2:14311676-14311695 | None:intergenic | 35.0% | |
TGATGGTTTACTCCAACAAA+TGG | - | chr2_2:14311677-14311696 | None:intergenic | 35.0% | |
TTTGTTGGAGTAAACCATCA+TGG | + | chr2_2:14311677-14311696 | Msa0239740:intron | 35.0% | |
AGGATACTAAGTCCTTTACT+TGG | + | chr2_2:14311738-14311757 | Msa0239740:intron | 35.0% | |
TGATCGGTAATTATGGCATT+TGG | - | chr2_2:14311803-14311822 | None:intergenic | 35.0% | |
TCTGTCTTGATCGGTAATTA+TGG | - | chr2_2:14311810-14311829 | None:intergenic | 35.0% | |
TTTCATGGATCTGTCTTGAT+CGG | - | chr2_2:14311819-14311838 | None:intergenic | 35.0% | |
!! | GAGTATCTACTTAGCTTTTC+TGG | - | chr2_2:14311911-14311930 | None:intergenic | 35.0% |
AGAGTGATTTCATGGAAAAG+TGG | + | chr2_2:14311987-14312006 | Msa0239740:intron | 35.0% | |
GAGTGATTTCATGGAAAAGT+GGG | + | chr2_2:14311988-14312007 | Msa0239740:intron | 35.0% | |
! | CATATGAAAGAGACACGTTT+TGG | + | chr2_2:14312092-14312111 | Msa0239740:intron | 35.0% |
!! | AAGGAAAACAAGGCTGATTT+TGG | + | chr2_2:14312242-14312261 | Msa0239740:CDS | 35.0% |
!! | TCATACTTGCTTTGAGAGAT+TGG | + | chr2_2:14312385-14312404 | Msa0239740:CDS | 35.0% |
CCACTGAGAGAAAATATAAG+AGG | - | chr2_2:14312609-14312628 | None:intergenic | 35.0% | |
! | CCTCTTATATTTTCTCTCAG+TGG | + | chr2_2:14312606-14312625 | Msa0239740:CDS | 35.0% |
! | CTTATATTTTCTCTCAGTGG+AGG | + | chr2_2:14312609-14312628 | Msa0239740:CDS | 35.0% |
AGACATACCCTTGTTAAATG+TGG | + | chr2_2:14312647-14312666 | Msa0239740:CDS | 35.0% | |
! | CTTTTATGAAGTTGCTTCTG+AGG | + | chr2_2:14312727-14312746 | Msa0239740:CDS | 35.0% |
GTTCAAGTAGTTGATCTAGT+TGG | + | chr2_2:14313117-14313136 | Msa0239740:CDS | 35.0% | |
!! | TAGGGGGAACAAATTAGTTT+TGG | + | chr2_2:14313257-14313276 | Msa0239740:intron | 35.0% |
!!! | AGGGGGAACAAATTAGTTTT+GGG | + | chr2_2:14313258-14313277 | Msa0239740:intron | 35.0% |
ACCTATGAGTGAAGTAAATC+AGG | + | chr2_2:14313334-14313353 | Msa0239740:CDS | 35.0% | |
ACCTGATTTACTTCACTCAT+AGG | - | chr2_2:14313338-14313357 | None:intergenic | 35.0% | |
CAAGAGTTATGCCCAATCTA+TGG | + | chr2_2:14311013-14311032 | Msa0239740:CDS | 40.0% | |
! | TATGCCCAATCTATGGGTTT+TGG | + | chr2_2:14311020-14311039 | Msa0239740:CDS | 40.0% |
TTTACTCTAGCATGTAGTCG+TGG | + | chr2_2:14311089-14311108 | Msa0239740:CDS | 40.0% | |
ATTCAATCTAGCCATGCACT+GGG | - | chr2_2:14311171-14311190 | None:intergenic | 40.0% | |
CTAAAATAGCGTGCTTTGTC+AGG | - | chr2_2:14311263-14311282 | None:intergenic | 40.0% | |
! | TCTAACCTCCTTTTCAAACG+AGG | - | chr2_2:14311305-14311324 | None:intergenic | 40.0% |
! | AGCCGCAATTGCATTTTTCA+TGG | - | chr2_2:14311834-14311853 | None:intergenic | 40.0% |
AACGTGTCTCTTTCATATGC+AGG | - | chr2_2:14312091-14312110 | None:intergenic | 40.0% | |
! | TTGCATTGGTGAATGCTTTC+TGG | - | chr2_2:14312322-14312341 | None:intergenic | 40.0% |
!! | ACTTGCTTTGAGAGATTGGA+AGG | + | chr2_2:14312389-14312408 | Msa0239740:CDS | 40.0% |
CTCAAAGTCTTTCTCGTTGA+AGG | - | chr2_2:14312489-14312508 | None:intergenic | 40.0% | |
! | TATTTTCTCTCAGTGGAGGA+AGG | + | chr2_2:14312613-14312632 | Msa0239740:CDS | 40.0% |
CTTTACTTCGAGTCGGTATA+GGG | - | chr2_2:14312889-14312908 | None:intergenic | 40.0% | |
!! | CTATACCGACTCGAAGTAAA+GGG | + | chr2_2:14312888-14312907 | Msa0239740:CDS | 40.0% |
!! | AAGGGTATCCTCCTTCAAAA+AGG | + | chr2_2:14312906-14312925 | Msa0239740:CDS | 40.0% |
!! | GAAGACTTCCTTTTTGAAGG+AGG | - | chr2_2:14312917-14312936 | None:intergenic | 40.0% |
ACAGAGTGGAAATCAACAAG+AGG | + | chr2_2:14312994-14313013 | Msa0239740:CDS | 40.0% | |
CTTGTACTTTAGATGCACAC+AGG | - | chr2_2:14313092-14313111 | None:intergenic | 40.0% | |
!!! | AGTTTTGGGATGAATGGACA+TGG | + | chr2_2:14313272-14313291 | Msa0239740:CDS | 40.0% |
CATTCAATCTAGCCATGCAC+TGG | - | chr2_2:14311172-14311191 | None:intergenic | 45.0% | |
TGGATCCTCGTTTGAAAAGG+AGG | + | chr2_2:14311297-14311316 | Msa0239740:CDS | 45.0% | |
AAAGTGAGGAGACTACGACT+TGG | + | chr2_2:14311440-14311459 | Msa0239740:CDS | 45.0% | |
AAGTGAGGAGACTACGACTT+GGG | + | chr2_2:14311441-14311460 | Msa0239740:CDS | 45.0% | |
! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr2_2:14311662-14311681 | Msa0239740:intron | 45.0% |
ACTCCAACAAATGGGGCAAA+AGG | - | chr2_2:14311668-14311687 | None:intergenic | 45.0% | |
! | ACAACACAGATTGGCCATGA+TGG | - | chr2_2:14311694-14311713 | None:intergenic | 45.0% |
TCATGGCCAATCTGTGTTGT+TGG | + | chr2_2:14311694-14311713 | Msa0239740:intron | 45.0% | |
! | CATGGCCAATCTGTGTTGTT+GGG | + | chr2_2:14311695-14311714 | Msa0239740:intron | 45.0% |
! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr2_2:14311718-14311737 | Msa0239740:intron | 45.0% |
GCATGCACTCTAACCATGTT+TGG | - | chr2_2:14311769-14311788 | None:intergenic | 45.0% | |
ACATGGTTAGAGTGCATGCA+TGG | + | chr2_2:14311770-14311789 | Msa0239740:intron | 45.0% | |
! | ACCATCGATGACGAGCTTTT+GGG | - | chr2_2:14311862-14311881 | None:intergenic | 45.0% |
!! | TGAAAGAGACACGTTTTGGG+CGG | + | chr2_2:14312096-14312115 | Msa0239740:intron | 45.0% |
AACCATCTTCCACAATGCCA+GGG | - | chr2_2:14312835-14312854 | None:intergenic | 45.0% | |
CCTTTACTTCGAGTCGGTAT+AGG | - | chr2_2:14312890-14312909 | None:intergenic | 45.0% | |
!! | CCTATACCGACTCGAAGTAA+AGG | + | chr2_2:14312887-14312906 | Msa0239740:CDS | 45.0% |
GGATACCCTTTACTTCGAGT+CGG | - | chr2_2:14312896-14312915 | None:intergenic | 45.0% | |
! | TTTGGGATGAATGGACATGG+TGG | + | chr2_2:14313275-14313294 | Msa0239740:CDS | 45.0% |
AGTGAGGAGACTACGACTTG+GGG | + | chr2_2:14311442-14311461 | Msa0239740:CDS | 50.0% | |
TTTGGGCAGATGCGAGATGT+AGG | + | chr2_2:14311573-14311592 | Msa0239740:intron | 50.0% | |
TTGGGCAGATGCGAGATGTA+GGG | + | chr2_2:14311574-14311593 | Msa0239740:intron | 50.0% | |
CACAGCCCAACAACACAGAT+TGG | - | chr2_2:14311703-14311722 | None:intergenic | 50.0% | |
! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr2_2:14311715-14311734 | Msa0239740:intron | 50.0% |
TCCCAAAAGCTCGTCATCGA+TGG | + | chr2_2:14311858-14311877 | Msa0239740:intron | 50.0% | |
! | CACCATCGATGACGAGCTTT+TGG | - | chr2_2:14311863-14311882 | None:intergenic | 50.0% |
CTCGTCATCGATGGTGTTTG+TGG | + | chr2_2:14311867-14311886 | Msa0239740:intron | 50.0% | |
!! | GAAAGAGACACGTTTTGGGC+GGG | + | chr2_2:14312097-14312116 | Msa0239740:intron | 50.0% |
!! | ACCTCTAAAGAAGCATCCCC+TGG | + | chr2_2:14312815-14312834 | Msa0239740:CDS | 50.0% |
ACCATCTTCCACAATGCCAG+GGG | - | chr2_2:14312834-14312853 | None:intergenic | 50.0% | |
GAACCATCTTCCACAATGCC+AGG | - | chr2_2:14312836-14312855 | None:intergenic | 50.0% | |
GCCAGGGGATGCTTCTTTAG+AGG | - | chr2_2:14312819-14312838 | None:intergenic | 55.0% | |
!! | AGAAGCATCCCCTGGCATTG+TGG | + | chr2_2:14312823-14312842 | Msa0239740:CDS | 55.0% |
TCCCCTGGCATTGTGGAAGA+TGG | + | chr2_2:14312830-14312849 | Msa0239740:CDS | 55.0% | |
! | AGGAGACTACGACTTGGGGC+TGG | + | chr2_2:14311446-14311465 | Msa0239740:CDS | 60.0% |
ACTTGGGGCTGGAGATGCTG+AGG | + | chr2_2:14311457-14311476 | Msa0239740:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 14310864 | 14313607 | 14310864 | ID=Msa0239740;Name=Msa0239740 |
chr2_2 | mRNA | 14310864 | 14313607 | 14310864 | ID=Msa0239740-mRNA-1;Parent=Msa0239740;Name=Msa0239740-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.66|0.5|1|1|0.75|4|240|559 |
chr2_2 | exon | 14310864 | 14311532 | 14310864 | ID=Msa0239740-mRNA-1:exon:5957;Parent=Msa0239740-mRNA-1 |
chr2_2 | exon | 14312185 | 14313015 | 14312185 | ID=Msa0239740-mRNA-1:exon:5958;Parent=Msa0239740-mRNA-1 |
chr2_2 | exon | 14313087 | 14313158 | 14313087 | ID=Msa0239740-mRNA-1:exon:5959;Parent=Msa0239740-mRNA-1 |
chr2_2 | exon | 14313260 | 14313607 | 14313260 | ID=Msa0239740-mRNA-1:exon:5960;Parent=Msa0239740-mRNA-1 |
chr2_2 | CDS | 14310864 | 14311532 | 14310864 | ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1 |
chr2_2 | CDS | 14312185 | 14313015 | 14312185 | ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1 |
chr2_2 | CDS | 14313087 | 14313158 | 14313087 | ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1 |
chr2_2 | CDS | 14313260 | 14313367 | 14313260 | ID=Msa0239740-mRNA-1:cds;Parent=Msa0239740-mRNA-1 |
chr2_2 | three_prime_UTR | 14313368 | 14313607 | 14313368 | ID=Msa0239740-mRNA-1:three_prime_utr;Parent=Msa0239740-mRNA-1 |
Gene Sequence |
Protein sequence |