Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240680 | XP_004503368.1 | 69.863 | 365 | 77 | 9 | 1 | 352 | 1 | 345 | 1.07e-163 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240680 | sp|Q9LVI4|TIF6B_ARATH | 33.763 | 388 | 172 | 18 | 1 | 352 | 1 | 339 | 2.53e-34 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240680 | A0A1S2YF40 | 69.863 | 365 | 77 | 9 | 1 | 352 | 1 | 345 | 5.13e-164 | 471 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0240680 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240680 | MtrunA17_Chr1g0161031 | 50.546 | 366 | 132 | 8 | 1 | 348 | 1 | 335 | 2.20e-105 | 313 |
| Msa0240680 | MtrunA17_Chr6g0478581 | 32.297 | 418 | 194 | 15 | 1 | 351 | 1 | 396 | 4.24e-46 | 162 |
| Msa0240680 | MtrunA17_Chr2g0301131 | 35.065 | 154 | 77 | 3 | 194 | 347 | 110 | 240 | 4.05e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240680 | AT3G17860.1 | 33.763 | 388 | 172 | 18 | 1 | 352 | 1 | 339 | 2.57e-35 | 132 |
| Msa0240680 | AT3G17860.2 | 34.393 | 346 | 152 | 16 | 43 | 352 | 20 | 326 | 1.25e-30 | 119 |
| Msa0240680 | AT3G17860.3 | 34.402 | 343 | 150 | 16 | 46 | 352 | 3 | 306 | 3.77e-30 | 117 |
| Msa0240680 | AT3G17860.4 | 34.402 | 343 | 150 | 16 | 46 | 352 | 3 | 306 | 3.77e-30 | 117 |
| Msa0240680 | AT1G48500.1 | 32.194 | 351 | 178 | 16 | 1 | 349 | 1 | 293 | 8.33e-25 | 102 |
| Msa0240680 | AT1G70700.1 | 38.723 | 235 | 98 | 8 | 112 | 340 | 50 | 244 | 1.03e-23 | 99.0 |
| Msa0240680 | AT1G70700.2 | 36.245 | 229 | 88 | 9 | 112 | 340 | 50 | 220 | 1.59e-22 | 95.1 |
| Msa0240680 | AT1G70700.3 | 36.889 | 225 | 102 | 8 | 112 | 333 | 50 | 237 | 3.35e-20 | 89.4 |
| Msa0240680 | AT1G48500.2 | 30.838 | 334 | 172 | 14 | 1 | 333 | 1 | 276 | 1.78e-19 | 87.4 |
| Msa0240680 | AT1G48500.3 | 30.796 | 289 | 153 | 11 | 46 | 333 | 4 | 246 | 8.06e-16 | 76.6 |
| Msa0240680 | AT5G20900.1 | 29.870 | 154 | 66 | 4 | 189 | 340 | 50 | 163 | 3.83e-11 | 62.0 |
Find 108 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGACGATGCTTGCATTTAT+AGG | 0.184858 | 2_2:-16032250 | None:intergenic |
| GATTTCTTGTTAATGTTATA+TGG | 0.220633 | 2_2:-16032088 | None:intergenic |
| TGAAACTGTATTAGCTTGAT+TGG | 0.288636 | 2_2:-16030664 | None:intergenic |
| TAGTAAAATTACTACGATTC+AGG | 0.303233 | 2_2:-16030831 | None:intergenic |
| ACATCATGTTGTACAGGATA+TGG | 0.307686 | 2_2:-16030624 | None:intergenic |
| GAGGAGGCTGGTGCATTTGC+AGG | 0.320510 | 2_2:-16031470 | None:intergenic |
| CAACAGAAGAAGAAAGAAAA+AGG | 0.322269 | 2_2:-16028763 | None:intergenic |
| GGTGAGAGATTTCATGGGTT+TGG | 0.322471 | 2_2:+16028833 | Msa0240680:CDS |
| ACTACTCCATGTTACTATTC+AGG | 0.352614 | 2_2:+16028872 | Msa0240680:CDS |
| AGCAGATACTTTGTTGGAAA+AGG | 0.357605 | 2_2:-16029650 | None:intergenic |
| CATAAAACCAGCAGATGTTA+TGG | 0.358564 | 2_2:-16029734 | None:intergenic |
| CATATGAAGCTGCCACTACT+TGG | 0.361235 | 2_2:+16030747 | Msa0240680:CDS |
| AGTATGCGATGAAATAGATA+TGG | 0.369654 | 2_2:-16031507 | None:intergenic |
| GGAGGCTCGGCATTGCTAAC+AGG | 0.384286 | 2_2:-16031605 | None:intergenic |
| TTTAACTGCGAGAAATTCAT+TGG | 0.399647 | 2_2:-16031561 | None:intergenic |
| GTTGGTTGAGGCGATGTAAC+AGG | 0.403409 | 2_2:-16030777 | None:intergenic |
| TGTAGGCTTCACAAAGGGTT+CGG | 0.418966 | 2_2:+16029615 | Msa0240680:intron |
| TTTCTCGCAGTTAAAACAAC+TGG | 0.425409 | 2_2:+16031569 | Msa0240680:CDS |
| AAGATGGTAAGTTGGGAAGA+AGG | 0.425596 | 2_2:-16030962 | None:intergenic |
| CATAGCACAGACAGAACTTC+AGG | 0.434059 | 2_2:+16031418 | Msa0240680:CDS |
| TTACTAGAGTCAAATGCATC+TGG | 0.436551 | 2_2:-16029760 | None:intergenic |
| CGCATAGAAGATGGTAAGTT+GGG | 0.437429 | 2_2:-16030969 | None:intergenic |
| TAGAAATCTTTCAATCATGA+TGG | 0.440350 | 2_2:+16030573 | Msa0240680:intron |
| GGCACAAGCTATCCTGTTGT+TGG | 0.441454 | 2_2:+16031367 | Msa0240680:intron |
| GCCATTACCATGCTGGCGTC+AGG | 0.443156 | 2_2:+16031641 | Msa0240680:CDS |
| GTAGGCTTCACAAAGGGTTC+GGG | 0.445204 | 2_2:+16029616 | Msa0240680:intron |
| CACCATTCCTAGCCAACAAC+AGG | 0.452637 | 2_2:-16031379 | None:intergenic |
| AACACTCTCTGCTGAACCTC+AGG | 0.459111 | 2_2:+16029783 | Msa0240680:CDS |
| ATATCTATTTCATCGCATAC+TGG | 0.462263 | 2_2:+16031509 | Msa0240680:CDS |
| GGATAATAGTCCCTAGCCTT+AGG | 0.466576 | 2_2:+16032190 | Msa0240680:three_prime_UTR |
| GCAAATGCACCAGCCTCCTC+TGG | 0.467713 | 2_2:+16031473 | Msa0240680:CDS |
| CCCACCATTGGTGCCGTCGT+TGG | 0.469756 | 2_2:+16030804 | Msa0240680:CDS |
| GCAGATACTTTGTTGGAAAA+GGG | 0.473482 | 2_2:-16029649 | None:intergenic |
| TCGCATACTGGTGCACAGTC+AGG | 0.473936 | 2_2:+16031521 | Msa0240680:CDS |
| ATAAAACCAGCAGATGTTAT+GGG | 0.478111 | 2_2:-16029733 | None:intergenic |
| ATATGAAGCTGCCACTACTT+GGG | 0.478655 | 2_2:+16030748 | Msa0240680:CDS |
| TCTGATCCCATAACATCTGC+TGG | 0.481214 | 2_2:+16029727 | Msa0240680:CDS |
| TGCATTTGCAGGTTGACTCA+CGG | 0.482777 | 2_2:-16031459 | None:intergenic |
| ACCTGACGCCAGCATGGTAA+TGG | 0.485087 | 2_2:-16031642 | None:intergenic |
| GTAATGGCATCGATTACTCT+TGG | 0.489598 | 2_2:-16031626 | None:intergenic |
| GAAATCAACCATGATGATGA+TGG | 0.493023 | 2_2:+16028900 | Msa0240680:CDS |
| AAGAGAGATACCTTGTCGGC+AGG | 0.494472 | 2_2:-16031019 | None:intergenic |
| AGTTGGGAAGAAGGCAGAGA+TGG | 0.495544 | 2_2:-16030953 | None:intergenic |
| TCAGGCTCGGAAAGCATCCT+TGG | 0.496291 | 2_2:+16031820 | Msa0240680:CDS |
| TAAGTAGTTTCCTAAGGCTA+GGG | 0.496887 | 2_2:-16032200 | None:intergenic |
| ATGTTAATTCAAAGGTGGAC+TGG | 0.500795 | 2_2:+16032337 | Msa0240680:three_prime_UTR |
| AGAAATCTTTCAATCATGAT+GGG | 0.503355 | 2_2:+16030574 | Msa0240680:intron |
| AAGCTATCCTGTTGTTGGCT+AGG | 0.504599 | 2_2:+16031372 | Msa0240680:CDS |
| TTAAGTAGTTTCCTAAGGCT+AGG | 0.504699 | 2_2:-16032201 | None:intergenic |
| ATCGATTACTCTTGGAGGCT+CGG | 0.505842 | 2_2:-16031618 | None:intergenic |
| CAACTTACCATCTTCTATGC+GGG | 0.506683 | 2_2:+16030971 | Msa0240680:CDS |
| TCCAACGACGGCACCAATGG+TGG | 0.507504 | 2_2:-16030805 | None:intergenic |
| ATCTTCACATCATGTTGTAC+AGG | 0.507813 | 2_2:-16030630 | None:intergenic |
| GGCATTGCTAACAGGAGTGA+TGG | 0.514325 | 2_2:-16031597 | None:intergenic |
| TATGAAGCTGCCACTACTTG+GGG | 0.520183 | 2_2:+16030749 | Msa0240680:CDS |
| CAACCAACTCTTCCCACCAT+TGG | 0.522868 | 2_2:+16030792 | Msa0240680:CDS |
| CCGCATAGAAGATGGTAAGT+TGG | 0.523235 | 2_2:-16030970 | None:intergenic |
| GCATTTGCAGGTTGACTCAC+GGG | 0.524091 | 2_2:-16031458 | None:intergenic |
| GCAGTTACAAAATGATTCCT+CGG | 0.526505 | 2_2:-16030702 | None:intergenic |
| ATCCTGTTGTTGGCTAGGAA+TGG | 0.530502 | 2_2:+16031377 | Msa0240680:CDS |
| AACAAAGAGAGATACCTTGT+CGG | 0.533016 | 2_2:-16031023 | None:intergenic |
| CTCACGGGCACACCGTCACC+AGG | 0.540218 | 2_2:-16031443 | None:intergenic |
| CAGTTACAAAATGATTCCTC+GGG | 0.542977 | 2_2:-16030701 | None:intergenic |
| TGGTTGAGCAGATACTTTGT+TGG | 0.544131 | 2_2:-16029656 | None:intergenic |
| GCACCAATGGTGGGAAGAGT+TGG | 0.549558 | 2_2:-16030795 | None:intergenic |
| GACGGTACCCGCATAGAAGA+TGG | 0.552065 | 2_2:-16030978 | None:intergenic |
| AGAGAGATACCTTGTCGGCA+GGG | 0.552823 | 2_2:-16031018 | None:intergenic |
| CTTGGATGACCAGAGGAGGC+TGG | 0.553563 | 2_2:-16031482 | None:intergenic |
| TGCATGATCCATCATCATCA+TGG | 0.557307 | 2_2:-16028908 | None:intergenic |
| CCATGTTACTATTCAGGAGG+AGG | 0.559780 | 2_2:+16028878 | Msa0240680:CDS |
| ATGCAGCGATACCTCAGGCT+CGG | 0.560553 | 2_2:+16031807 | Msa0240680:intron |
| ATGGCATCGATTACTCTTGG+AGG | 0.566283 | 2_2:-16031623 | None:intergenic |
| GATGTCATTGAAAACATTGA+CGG | 0.568358 | 2_2:-16030996 | None:intergenic |
| CATTCCAACGACGGCACCAA+TGG | 0.572081 | 2_2:-16030808 | None:intergenic |
| AATCGATGCCATTACCATGC+TGG | 0.572186 | 2_2:+16031634 | Msa0240680:CDS |
| CAGACAGAACTTCAGGCACC+TGG | 0.577240 | 2_2:+16031425 | Msa0240680:CDS |
| ACTGGTGCACAGTCAGGCAG+TGG | 0.578273 | 2_2:+16031527 | Msa0240680:CDS |
| CCTCCTCCTGAATAGTAACA+TGG | 0.582944 | 2_2:-16028878 | None:intergenic |
| GTATGCGATGAAATAGATAT+GGG | 0.584760 | 2_2:-16031506 | None:intergenic |
| CAATGACATCCCTGCCGACA+AGG | 0.588647 | 2_2:+16031009 | Msa0240680:CDS |
| GAACTTCAGGCACCTGGTGA+CGG | 0.589320 | 2_2:+16031431 | Msa0240680:CDS |
| TTACTATGTTAATTCAAAGG+TGG | 0.596731 | 2_2:+16032332 | Msa0240680:three_prime_UTR |
| ACTGCTGGTCAGAATATGAA+TGG | 0.602374 | 2_2:+16030720 | Msa0240680:CDS |
| GCATTGCTAACAGGAGTGAT+GGG | 0.603727 | 2_2:-16031596 | None:intergenic |
| TTCTAGAAAAGCGCAAGGAG+AGG | 0.607349 | 2_2:+16031849 | Msa0240680:CDS |
| GGCTAGGAATGGTGTATCAG+TGG | 0.612360 | 2_2:+16031388 | Msa0240680:CDS |
| AATACTCTCTCAGCAGAGCA+AGG | 0.614497 | 2_2:+16032169 | Msa0240680:three_prime_UTR |
| GATGAAATAGATATGGGACT+TGG | 0.616222 | 2_2:-16031500 | None:intergenic |
| TCTTTCAATCATGATGGGCA+AGG | 0.623986 | 2_2:+16030579 | Msa0240680:CDS |
| CCAACGACGGCACCAATGGT+GGG | 0.628134 | 2_2:-16030804 | None:intergenic |
| CAGCATACCTGACGCCAGCA+TGG | 0.631084 | 2_2:-16031648 | None:intergenic |
| ACCTCAAAAGACATCAAATG+TGG | 0.632234 | 2_2:-16029676 | None:intergenic |
| CATTGACGAACTCATTCCCG+AGG | 0.632457 | 2_2:+16030685 | Msa0240680:CDS |
| AAGGATGCTTTCCGAGCCTG+AGG | 0.641286 | 2_2:-16031818 | None:intergenic |
| TTCAATCATGATGGGCAAGG+TGG | 0.642760 | 2_2:+16030582 | Msa0240680:CDS |
| CGATTCAGGCATTCCAACGA+CGG | 0.643026 | 2_2:-16030817 | None:intergenic |
| GTATGTGTAGGCTTCACAAA+GGG | 0.645767 | 2_2:+16029610 | Msa0240680:intron |
| CAAAGGGTTCGGGTGCACAA+TGG | 0.652681 | 2_2:+16029626 | Msa0240680:CDS |
| GATGGATCATGCAAACACTC+TGG | 0.653555 | 2_2:+16028918 | Msa0240680:CDS |
| GGTATGTGTAGGCTTCACAA+AGG | 0.665915 | 2_2:+16029609 | Msa0240680:intron |
| ACTCCATGTTACTATTCAGG+AGG | 0.671472 | 2_2:+16028875 | Msa0240680:CDS |
| ATGAAGCTGCCACTACTTGG+GGG | 0.671873 | 2_2:+16030750 | Msa0240680:CDS |
| CCAACTTACCATCTTCTATG+CGG | 0.674088 | 2_2:+16030970 | Msa0240680:CDS |
| GGGACTTGGATGACCAGAGG+AGG | 0.679930 | 2_2:-16031486 | None:intergenic |
| AAAATGGTGAGAGATTTCAT+GGG | 0.689320 | 2_2:+16028828 | Msa0240680:exon |
| TATGGGACTTGGATGACCAG+AGG | 0.694039 | 2_2:-16031489 | None:intergenic |
| TGTACTTCATCATAATACAA+CGG | 0.704713 | 2_2:+16032118 | Msa0240680:exon |
| ATGGTGGGAAGAGTTGGTTG+AGG | 0.716568 | 2_2:-16030789 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTTTATAAAGAAA+AGG | - | chr2_2:16031887-16031906 | None:intergenic | 10.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | - | chr2_2:16030145-16030164 | None:intergenic | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | - | chr2_2:16030146-16030165 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | - | chr2_2:16030268-16030287 | None:intergenic | 15.0% |
| !! | TTTACCTTGTATTTATTTAT+AGG | - | chr2_2:16031062-16031081 | None:intergenic | 15.0% |
| !! | TAAATAAATACAAGGTAAAA+AGG | + | chr2_2:16031063-16031082 | Msa0240680:intron | 15.0% |
| !! | AAATTATTAAATGTGTAGAA+TGG | - | chr2_2:16031772-16031791 | None:intergenic | 15.0% |
| !!! | ATTTTACTATGTTAATTCAA+AGG | + | chr2_2:16032329-16032348 | Msa0240680:three_prime_UTR | 15.0% |
| !!! | AAGTACTTTTCAATTATCTT+TGG | + | chr2_2:16028942-16028961 | Msa0240680:intron | 20.0% |
| !!! | TTTGTAAAATTGATTTTGAC+TGG | + | chr2_2:16029305-16029324 | Msa0240680:intron | 20.0% |
| !! | ACATGTTTCTCATATAAAAA+TGG | + | chr2_2:16029343-16029362 | Msa0240680:intron | 20.0% |
| !!! | AGAATTGATTTTGAAATGTT+TGG | - | chr2_2:16029478-16029497 | None:intergenic | 20.0% |
| !! | AGATTGAAAAATTCACAATA+TGG | - | chr2_2:16029564-16029583 | None:intergenic | 20.0% |
| !!! | AATCTATTTTTTATCCCTTA+AGG | + | chr2_2:16029579-16029598 | Msa0240680:intron | 20.0% |
| !!! | TGTAACATTTTTTACATTGA+CGG | + | chr2_2:16029980-16029999 | Msa0240680:intron | 20.0% |
| !!! | TGAAATGACTTAGTTATTTT+GGG | - | chr2_2:16030093-16030112 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | - | chr2_2:16030181-16030200 | None:intergenic | 20.0% |
| !! | TAAAGTGGAATATATTGAAT+TGG | - | chr2_2:16030182-16030201 | None:intergenic | 20.0% |
| !! | GTTTATGAACATTTAACATT+TGG | + | chr2_2:16030344-16030363 | Msa0240680:intron | 20.0% |
| !! | ACGTAGTAGTATATTAATTA+AGG | + | chr2_2:16030413-16030432 | Msa0240680:intron | 20.0% |
| !! | CGTAGTAGTATATTAATTAA+GGG | + | chr2_2:16030414-16030433 | Msa0240680:intron | 20.0% |
| !! | AAGGAAAAAAAAATGAATTG+TGG | - | chr2_2:16031089-16031108 | None:intergenic | 20.0% |
| !! | TTGTTTATTGAAATCTTGTT+TGG | + | chr2_2:16031706-16031725 | Msa0240680:intron | 20.0% |
| !!! | TGTTTATTGAAATCTTGTTT+GGG | + | chr2_2:16031707-16031726 | Msa0240680:intron | 20.0% |
| !! | GATTTCTTGTTAATGTTATA+TGG | - | chr2_2:16032091-16032110 | None:intergenic | 20.0% |
| ! | CTTGTATAAGATATTCCTTA+AGG | + | chr2_2:16029136-16029155 | Msa0240680:intron | 25.0% |
| ! | TTAATGCTAAGATCAATTGT+AGG | + | chr2_2:16029380-16029399 | Msa0240680:intron | 25.0% |
| !! | TTGAAATGTTTGGATCTTTT+CGG | - | chr2_2:16029468-16029487 | None:intergenic | 25.0% |
| ! | TACAAATGCTCAGTTATTAT+GGG | - | chr2_2:16030057-16030076 | None:intergenic | 25.0% |
| ! | TTACAAATGCTCAGTTATTA+TGG | - | chr2_2:16030058-16030077 | None:intergenic | 25.0% |
| !! | GTGAAATGACTTAGTTATTT+TGG | - | chr2_2:16030094-16030113 | None:intergenic | 25.0% |
| !!! | AGTTTTTGACTCAGTTAATT+CGG | + | chr2_2:16030302-16030321 | Msa0240680:intron | 25.0% |
| ! | CTTGTACTTGTTTAAATTTG+AGG | - | chr2_2:16030443-16030462 | None:intergenic | 25.0% |
| ! | AATTGCAAACAAACAATAGA+AGG | - | chr2_2:16030547-16030566 | None:intergenic | 25.0% |
| ! | TAGAAATCTTTCAATCATGA+TGG | + | chr2_2:16030573-16030592 | Msa0240680:intron | 25.0% |
| ! | AGAAATCTTTCAATCATGAT+GGG | + | chr2_2:16030574-16030593 | Msa0240680:intron | 25.0% |
| ! | TAGTAAAATTACTACGATTC+AGG | - | chr2_2:16030834-16030853 | None:intergenic | 25.0% |
| ! | TGTATTTATTTATAGGCAGA+AGG | - | chr2_2:16031055-16031074 | None:intergenic | 25.0% |
| ! | TCTGCCTATAAATAAATACA+AGG | + | chr2_2:16031055-16031074 | Msa0240680:intron | 25.0% |
| !! | TTTTTCGTTAACCAAGTTAT+TGG | - | chr2_2:16031300-16031319 | None:intergenic | 25.0% |
| !! | GTTTATTGAAATCTTGTTTG+GGG | + | chr2_2:16031708-16031727 | Msa0240680:intron | 25.0% |
| ! | TTAAATCTACTAATCTAGGA+TGG | - | chr2_2:16031911-16031930 | None:intergenic | 25.0% |
| ! | ATCCTAGATTAGTAGATTTA+AGG | + | chr2_2:16031910-16031929 | Msa0240680:intron | 25.0% |
| ! | TCCTAGATTAGTAGATTTAA+GGG | + | chr2_2:16031911-16031930 | Msa0240680:intron | 25.0% |
| ! | AAAAGTAATGTGTGTAGAAA+TGG | - | chr2_2:16031940-16031959 | None:intergenic | 25.0% |
| ! | TGTACTTCATCATAATACAA+CGG | + | chr2_2:16032118-16032137 | Msa0240680:exon | 25.0% |
| !!! | TTCTTTTAAGTAGTTTCCTA+AGG | - | chr2_2:16032209-16032228 | None:intergenic | 25.0% |
| ! | TTACTATGTTAATTCAAAGG+TGG | + | chr2_2:16032332-16032351 | Msa0240680:three_prime_UTR | 25.0% |
| CAACAGAAGAAGAAAGAAAA+AGG | - | chr2_2:16028766-16028785 | None:intergenic | 30.0% | |
| !!! | TGTTGATGATTTTCTGAAGA+AGG | + | chr2_2:16028781-16028800 | Msa0240680:five_prime_UTR | 30.0% |
| !! | ATTTTTCAGAGACAAAGGAA+AGG | - | chr2_2:16028813-16028832 | None:intergenic | 30.0% |
| ! | TTTCCTTTGTCTCTGAAAAA+TGG | + | chr2_2:16028812-16028831 | Msa0240680:exon | 30.0% |
| AAAAATGGTGAGAGATTTCA+TGG | + | chr2_2:16028827-16028846 | Msa0240680:exon | 30.0% | |
| AAAATGGTGAGAGATTTCAT+GGG | + | chr2_2:16028828-16028847 | Msa0240680:exon | 30.0% | |
| ! | TCCTGAGTGTTTAATTTCAT+TGG | + | chr2_2:16029000-16029019 | Msa0240680:intron | 30.0% |
| ACCAATGAAATTAAACACTC+AGG | - | chr2_2:16029004-16029023 | None:intergenic | 30.0% | |
| ! | TGAGTGTTTAATTTCATTGG+TGG | + | chr2_2:16029003-16029022 | Msa0240680:intron | 30.0% |
| ATCAGTTTGACAAAATTTGG+TGG | - | chr2_2:16029213-16029232 | None:intergenic | 30.0% | |
| ! | CCAAATTTTGTCAAACTGAT+CGG | + | chr2_2:16029213-16029232 | Msa0240680:intron | 30.0% |
| !! | TAGATGTTTGGTTTCACTTT+TGG | - | chr2_2:16029528-16029547 | None:intergenic | 30.0% |
| ! | TTTTATCCCTTAAGGTTTAG+TGG | + | chr2_2:16029587-16029606 | Msa0240680:intron | 30.0% |
| TTTATCCCTTAAGGTTTAGT+GGG | + | chr2_2:16029588-16029607 | Msa0240680:intron | 30.0% | |
| ATAAAACCAGCAGATGTTAT+GGG | - | chr2_2:16029736-16029755 | None:intergenic | 30.0% | |
| ! | TTTTACATTGACGGTGTATA+TGG | + | chr2_2:16029989-16030008 | Msa0240680:intron | 30.0% |
| TGGAATATATTGAATTGGGA+AGG | - | chr2_2:16030177-16030196 | None:intergenic | 30.0% | |
| CCACTATCATAAATGTAAAG+TGG | - | chr2_2:16030197-16030216 | None:intergenic | 30.0% | |
| CCACTTTACATTTATGATAG+TGG | + | chr2_2:16030194-16030213 | Msa0240680:intron | 30.0% | |
| ! | TAAGTGCACTTGTTAAGTAT+TGG | - | chr2_2:16030228-16030247 | None:intergenic | 30.0% |
| !! | GTTTTTGACTCAGTTAATTC+GGG | + | chr2_2:16030303-16030322 | Msa0240680:intron | 30.0% |
| AAACAATAGAAGGAAGTGAA+GGG | - | chr2_2:16030537-16030556 | None:intergenic | 30.0% | |
| ! | TGAAACTGTATTAGCTTGAT+TGG | - | chr2_2:16030667-16030686 | None:intergenic | 30.0% |
| GATGTCATTGAAAACATTGA+CGG | - | chr2_2:16030999-16031018 | None:intergenic | 30.0% | |
| ACTTGGTTAACGAAAAAACT+TGG | + | chr2_2:16031303-16031322 | Msa0240680:intron | 30.0% | |
| GTATGCGATGAAATAGATAT+GGG | - | chr2_2:16031509-16031528 | None:intergenic | 30.0% | |
| AGTATGCGATGAAATAGATA+TGG | - | chr2_2:16031510-16031529 | None:intergenic | 30.0% | |
| ATATCTATTTCATCGCATAC+TGG | + | chr2_2:16031509-16031528 | Msa0240680:CDS | 30.0% | |
| TTTAACTGCGAGAAATTCAT+TGG | - | chr2_2:16031564-16031583 | None:intergenic | 30.0% | |
| CTAACTGCAATAATGAGAAA+TGG | - | chr2_2:16031680-16031699 | None:intergenic | 30.0% | |
| CATTTAGTATTGTGTTTGCA+GGG | + | chr2_2:16032051-16032070 | Msa0240680:intron | 30.0% | |
| ! | AAGTACGTTCATAACTTTTG+CGG | + | chr2_2:16032299-16032318 | Msa0240680:three_prime_UTR | 30.0% |
| !! | TCACCATTTTTCAGAGACAA+AGG | - | chr2_2:16028818-16028837 | None:intergenic | 35.0% |
| ACTACTCCATGTTACTATTC+AGG | + | chr2_2:16028872-16028891 | Msa0240680:CDS | 35.0% | |
| ! | GAAATCAACCATGATGATGA+TGG | + | chr2_2:16028900-16028919 | Msa0240680:CDS | 35.0% |
| TAGATGGATGGTGAATTTGA+TGG | + | chr2_2:16029171-16029190 | Msa0240680:intron | 35.0% | |
| CCGATCAGTTTGACAAAATT+TGG | - | chr2_2:16029216-16029235 | None:intergenic | 35.0% | |
| AGATCAATTGTAGGAGTCAA+AGG | + | chr2_2:16029389-16029408 | Msa0240680:intron | 35.0% | |
| ! | GAATTGATTCAGCTTCAAGT+TGG | - | chr2_2:16029424-16029443 | None:intergenic | 35.0% |
| AACCAAACATCTACACTTAG+TGG | + | chr2_2:16029535-16029554 | Msa0240680:intron | 35.0% | |
| ATCCACTAAGTGTAGATGTT+TGG | - | chr2_2:16029540-16029559 | None:intergenic | 35.0% | |
| ACATACCCACTAAACCTTAA+GGG | - | chr2_2:16029596-16029615 | None:intergenic | 35.0% | |
| GCAGATACTTTGTTGGAAAA+GGG | - | chr2_2:16029652-16029671 | None:intergenic | 35.0% | |
| AGCAGATACTTTGTTGGAAA+AGG | - | chr2_2:16029653-16029672 | None:intergenic | 35.0% | |
| ! | ACCACATTTGATGTCTTTTG+AGG | + | chr2_2:16029675-16029694 | Msa0240680:CDS | 35.0% |
| ACCTCAAAAGACATCAAATG+TGG | - | chr2_2:16029679-16029698 | None:intergenic | 35.0% | |
| CATAAAACCAGCAGATGTTA+TGG | - | chr2_2:16029737-16029756 | None:intergenic | 35.0% | |
| TTACTAGAGTCAAATGCATC+TGG | - | chr2_2:16029763-16029782 | None:intergenic | 35.0% | |
| TTAATGATCGACGATTAAGC+TGG | + | chr2_2:16029949-16029968 | Msa0240680:intron | 35.0% | |
| AATGCTCAGTTATTATGGGA+TGG | - | chr2_2:16030053-16030072 | None:intergenic | 35.0% | |
| CAAACAATAGAAGGAAGTGA+AGG | - | chr2_2:16030538-16030557 | None:intergenic | 35.0% | |
| ACATCATGTTGTACAGGATA+TGG | - | chr2_2:16030627-16030646 | None:intergenic | 35.0% | |
| ATCTTCACATCATGTTGTAC+AGG | - | chr2_2:16030633-16030652 | None:intergenic | 35.0% | |
| CAGTTACAAAATGATTCCTC+GGG | - | chr2_2:16030704-16030723 | None:intergenic | 35.0% | |
| GCAGTTACAAAATGATTCCT+CGG | - | chr2_2:16030705-16030724 | None:intergenic | 35.0% | |
| ! | AGGAATCATTTTGTAACTGC+TGG | + | chr2_2:16030705-16030724 | Msa0240680:CDS | 35.0% |
| AACAAAGAGAGATACCTTGT+CGG | - | chr2_2:16031026-16031045 | None:intergenic | 35.0% | |
| !! | CAATGTAATGTTGGTGATCA+AGG | - | chr2_2:16031122-16031141 | None:intergenic | 35.0% |
| CTTGATCACCAACATTACAT+TGG | + | chr2_2:16031120-16031139 | Msa0240680:intron | 35.0% | |
| GAATCAGAGACTTAGCTTAA+GGG | - | chr2_2:16031171-16031190 | None:intergenic | 35.0% | |
| ATTAAGCTTGACTATGGTCA+AGG | - | chr2_2:16031329-16031348 | None:intergenic | 35.0% | |
| ACCATAGTCAAGCTTAATTG+TGG | + | chr2_2:16031331-16031350 | Msa0240680:intron | 35.0% | |
| ! | AATTGTGGCACTATTTCTTC+AGG | + | chr2_2:16031346-16031365 | Msa0240680:intron | 35.0% |
| GATGAAATAGATATGGGACT+TGG | - | chr2_2:16031503-16031522 | None:intergenic | 35.0% | |
| TTTCTCGCAGTTAAAACAAC+TGG | + | chr2_2:16031569-16031588 | Msa0240680:CDS | 35.0% | |
| GCCCTTAAATCTACTAATCT+AGG | - | chr2_2:16031915-16031934 | None:intergenic | 35.0% | |
| TCATTACCCCTCAATTTGAA+GGG | - | chr2_2:16031970-16031989 | None:intergenic | 35.0% | |
| GCATTTAGTATTGTGTTTGC+AGG | + | chr2_2:16032050-16032069 | Msa0240680:intron | 35.0% | |
| TAAGTAGTTTCCTAAGGCTA+GGG | - | chr2_2:16032203-16032222 | None:intergenic | 35.0% | |
| TTAAGTAGTTTCCTAAGGCT+AGG | - | chr2_2:16032204-16032223 | None:intergenic | 35.0% | |
| ! | AGTACGTTCATAACTTTTGC+GGG | + | chr2_2:16032300-16032319 | Msa0240680:three_prime_UTR | 35.0% |
| ATGTTAATTCAAAGGTGGAC+TGG | + | chr2_2:16032337-16032356 | Msa0240680:three_prime_UTR | 35.0% | |
| ACTCCATGTTACTATTCAGG+AGG | + | chr2_2:16028875-16028894 | Msa0240680:CDS | 40.0% | |
| TGCATGATCCATCATCATCA+TGG | - | chr2_2:16028911-16028930 | None:intergenic | 40.0% | |
| ! | CTAAACATGCACTGACCTTA+AGG | - | chr2_2:16029154-16029173 | None:intergenic | 40.0% |
| AAGGTCAGTGCATGTTTAGA+TGG | + | chr2_2:16029155-16029174 | Msa0240680:intron | 40.0% | |
| TCAGTGCATGTTTAGATGGA+TGG | + | chr2_2:16029159-16029178 | Msa0240680:intron | 40.0% | |
| CACATACCCACTAAACCTTA+AGG | - | chr2_2:16029597-16029616 | None:intergenic | 40.0% | |
| ! | AAGGTTTAGTGGGTATGTGT+AGG | + | chr2_2:16029598-16029617 | Msa0240680:intron | 40.0% |
| GTATGTGTAGGCTTCACAAA+GGG | + | chr2_2:16029610-16029629 | Msa0240680:intron | 40.0% | |
| TGGTTGAGCAGATACTTTGT+TGG | - | chr2_2:16029659-16029678 | None:intergenic | 40.0% | |
| ! | AGTTTAAAGCCTGAACAGCA+CGG | - | chr2_2:16029825-16029844 | None:intergenic | 40.0% |
| CTCAGTTATTATGGGATGGA+GGG | - | chr2_2:16030049-16030068 | None:intergenic | 40.0% | |
| TTGACTCAGTTAATTCGGGA+CGG | + | chr2_2:16030307-16030326 | Msa0240680:intron | 40.0% | |
| CCAATCAGACTAGAATACAC+TGG | - | chr2_2:16030375-16030394 | None:intergenic | 40.0% | |
| CCAGTGTATTCTAGTCTGAT+TGG | + | chr2_2:16030372-16030391 | Msa0240680:intron | 40.0% | |
| !! | TCTTTCAATCATGATGGGCA+AGG | + | chr2_2:16030579-16030598 | Msa0240680:CDS | 40.0% |
| ACTGCTGGTCAGAATATGAA+TGG | + | chr2_2:16030720-16030739 | Msa0240680:CDS | 40.0% | |
| ATATGAAGCTGCCACTACTT+GGG | + | chr2_2:16030748-16030767 | Msa0240680:CDS | 40.0% | |
| ! | AAGATGGTAAGTTGGGAAGA+AGG | - | chr2_2:16030965-16030984 | None:intergenic | 40.0% |
| CGCATAGAAGATGGTAAGTT+GGG | - | chr2_2:16030972-16030991 | None:intergenic | 40.0% | |
| CCAACTTACCATCTTCTATG+CGG | + | chr2_2:16030970-16030989 | Msa0240680:CDS | 40.0% | |
| CAACTTACCATCTTCTATGC+GGG | + | chr2_2:16030971-16030990 | Msa0240680:CDS | 40.0% | |
| CGAATCAGAGACTTAGCTTA+AGG | - | chr2_2:16031172-16031191 | None:intergenic | 40.0% | |
| ATGGGGAAAAAATGGTTGAG+AGG | + | chr2_2:16031202-16031221 | Msa0240680:intron | 40.0% | |
| GCCACAATTAAGCTTGACTA+TGG | - | chr2_2:16031335-16031354 | None:intergenic | 40.0% | |
| !! | GTAATGGCATCGATTACTCT+TGG | - | chr2_2:16031629-16031648 | None:intergenic | 40.0% |
| GGTATCGCTGCATAAAAGAT+TGG | - | chr2_2:16031800-16031819 | None:intergenic | 40.0% | |
| !! | CTTTTCTAGAAAACGAGCCA+AGG | - | chr2_2:16031840-16031859 | None:intergenic | 40.0% |
| !! | TCGTTTTCTAGAAAAGCGCA+AGG | + | chr2_2:16031844-16031863 | Msa0240680:CDS | 40.0% |
| CATTACCCCTCAATTTGAAG+GGG | - | chr2_2:16031969-16031988 | None:intergenic | 40.0% | |
| CTCATTACCCCTCAATTTGA+AGG | - | chr2_2:16031971-16031990 | None:intergenic | 40.0% | |
| CTTCAAATTGAGGGGTAATG+AGG | + | chr2_2:16031969-16031988 | Msa0240680:intron | 40.0% | |
| ACGACGATGCTTGCATTTAT+AGG | - | chr2_2:16032253-16032272 | None:intergenic | 40.0% | |
| ! | GTACGTTCATAACTTTTGCG+GGG | + | chr2_2:16032301-16032320 | Msa0240680:three_prime_UTR | 40.0% |
| ! | TTCATAACTTTTGCGGGGTA+GGG | + | chr2_2:16032306-16032325 | Msa0240680:three_prime_UTR | 40.0% |
| GGTGAGAGATTTCATGGGTT+TGG | + | chr2_2:16028833-16028852 | Msa0240680:CDS | 45.0% | |
| CCTCCTCCTGAATAGTAACA+TGG | - | chr2_2:16028881-16028900 | None:intergenic | 45.0% | |
| CCATGTTACTATTCAGGAGG+AGG | + | chr2_2:16028878-16028897 | Msa0240680:CDS | 45.0% | |
| GATGGATCATGCAAACACTC+TGG | + | chr2_2:16028918-16028937 | Msa0240680:CDS | 45.0% | |
| CTCAGGAATGTTTGCATGCA+TGG | - | chr2_2:16028987-16029006 | None:intergenic | 45.0% | |
| GGTATGTGTAGGCTTCACAA+AGG | + | chr2_2:16029609-16029628 | Msa0240680:intron | 45.0% | |
| TGTAGGCTTCACAAAGGGTT+CGG | + | chr2_2:16029615-16029634 | Msa0240680:intron | 45.0% | |
| TCTGATCCCATAACATCTGC+TGG | + | chr2_2:16029727-16029746 | Msa0240680:CDS | 45.0% | |
| AAAGGGTAGCATCAAACCTG+AGG | - | chr2_2:16029802-16029821 | None:intergenic | 45.0% | |
| GCTCAGTTATTATGGGATGG+AGG | - | chr2_2:16030050-16030069 | None:intergenic | 45.0% | |
| !! | TTCAATCATGATGGGCAAGG+TGG | + | chr2_2:16030582-16030601 | Msa0240680:CDS | 45.0% |
| CATATGAAGCTGCCACTACT+TGG | + | chr2_2:16030747-16030766 | Msa0240680:CDS | 45.0% | |
| TATGAAGCTGCCACTACTTG+GGG | + | chr2_2:16030749-16030768 | Msa0240680:CDS | 45.0% | |
| CCGCATAGAAGATGGTAAGT+TGG | - | chr2_2:16030973-16030992 | None:intergenic | 45.0% | |
| !! | TGATCAAGGTCAAGTTGGCA+AGG | - | chr2_2:16031108-16031127 | None:intergenic | 45.0% |
| !! | GTTGGTGATCAAGGTCAAGT+TGG | - | chr2_2:16031113-16031132 | None:intergenic | 45.0% |
| CACTCGGACCAATGTAATGT+TGG | - | chr2_2:16031131-16031150 | None:intergenic | 45.0% | |
| CATTGGTCCGAGTGAAAAAC+TGG | + | chr2_2:16031137-16031156 | Msa0240680:intron | 45.0% | |
| TCCGAGTGAAAAACTGGACT+CGG | + | chr2_2:16031143-16031162 | Msa0240680:intron | 45.0% | |
| ! | TCCGAGTCCAGTTTTTCACT+CGG | - | chr2_2:16031147-16031166 | None:intergenic | 45.0% |
| !!! | CCATTTTTTCCCCATCCACA+AGG | - | chr2_2:16031197-16031216 | None:intergenic | 45.0% |
| CCTTGTGGATGGGGAAAAAA+TGG | + | chr2_2:16031194-16031213 | Msa0240680:intron | 45.0% | |
| !! | CTGACGACTAGTCTCTGTTT+GGG | - | chr2_2:16031259-16031278 | None:intergenic | 45.0% |
| ! | AGACTAGTCGTCAGCAAAGT+CGG | + | chr2_2:16031265-16031284 | Msa0240680:intron | 45.0% |
| GGTGGATCACACCAATAACT+TGG | + | chr2_2:16031286-16031305 | Msa0240680:intron | 45.0% | |
| ! | AAGCTATCCTGTTGTTGGCT+AGG | + | chr2_2:16031372-16031391 | Msa0240680:CDS | 45.0% |
| ! | ATCCTGTTGTTGGCTAGGAA+TGG | + | chr2_2:16031377-16031396 | Msa0240680:CDS | 45.0% |
| CATAGCACAGACAGAACTTC+AGG | + | chr2_2:16031418-16031437 | Msa0240680:CDS | 45.0% | |
| ! | TGCATTTGCAGGTTGACTCA+CGG | - | chr2_2:16031462-16031481 | None:intergenic | 45.0% |
| GCATTGCTAACAGGAGTGAT+GGG | - | chr2_2:16031599-16031618 | None:intergenic | 45.0% | |
| ATCGATTACTCTTGGAGGCT+CGG | - | chr2_2:16031621-16031640 | None:intergenic | 45.0% | |
| !! | ATGGCATCGATTACTCTTGG+AGG | - | chr2_2:16031626-16031645 | None:intergenic | 45.0% |
| AATCGATGCCATTACCATGC+TGG | + | chr2_2:16031634-16031653 | Msa0240680:CDS | 45.0% | |
| ! | CTTTTATGCAGCGATACCTC+AGG | + | chr2_2:16031802-16031821 | Msa0240680:intron | 45.0% |
| ! | TTCTAGAAAAGCGCAAGGAG+AGG | + | chr2_2:16031849-16031868 | Msa0240680:CDS | 45.0% |
| ! | TTTTGCGCCCCTTCAAATTG+AGG | + | chr2_2:16031959-16031978 | Msa0240680:intron | 45.0% |
| TTTGCGCCCCTTCAAATTGA+GGG | + | chr2_2:16031960-16031979 | Msa0240680:intron | 45.0% | |
| AATACTCTCTCAGCAGAGCA+AGG | + | chr2_2:16032169-16032188 | Msa0240680:three_prime_UTR | 45.0% | |
| ! | GGATAATAGTCCCTAGCCTT+AGG | + | chr2_2:16032190-16032209 | Msa0240680:three_prime_UTR | 45.0% |
| ! | GTTCATAACTTTTGCGGGGT+AGG | + | chr2_2:16032305-16032324 | Msa0240680:three_prime_UTR | 45.0% |
| GTAGGCTTCACAAAGGGTTC+GGG | + | chr2_2:16029616-16029635 | Msa0240680:intron | 50.0% | |
| AACACTCTCTGCTGAACCTC+AGG | + | chr2_2:16029783-16029802 | Msa0240680:CDS | 50.0% | |
| AAGCCTGAACAGCACGGAAA+GGG | - | chr2_2:16029819-16029838 | None:intergenic | 50.0% | |
| AAAGCCTGAACAGCACGGAA+AGG | - | chr2_2:16029820-16029839 | None:intergenic | 50.0% | |
| ACTCAGTTAATTCGGGACGG+AGG | + | chr2_2:16030310-16030329 | Msa0240680:intron | 50.0% | |
| CTCAGTTAATTCGGGACGGA+GGG | + | chr2_2:16030311-16030330 | Msa0240680:intron | 50.0% | |
| CATTGACGAACTCATTCCCG+AGG | + | chr2_2:16030685-16030704 | Msa0240680:CDS | 50.0% | |
| ATGAAGCTGCCACTACTTGG+GGG | + | chr2_2:16030750-16030769 | Msa0240680:CDS | 50.0% | |
| ACAGGTATTCCCCCAAGTAG+TGG | - | chr2_2:16030762-16030781 | None:intergenic | 50.0% | |
| GTTGGTTGAGGCGATGTAAC+AGG | - | chr2_2:16030780-16030799 | None:intergenic | 50.0% | |
| ! | ATGGTGGGAAGAGTTGGTTG+AGG | - | chr2_2:16030792-16030811 | None:intergenic | 50.0% |
| CAACCAACTCTTCCCACCAT+TGG | + | chr2_2:16030792-16030811 | Msa0240680:CDS | 50.0% | |
| CGATTCAGGCATTCCAACGA+CGG | - | chr2_2:16030820-16030839 | None:intergenic | 50.0% | |
| AGTTGGGAAGAAGGCAGAGA+TGG | - | chr2_2:16030956-16030975 | None:intergenic | 50.0% | |
| AGAGAGATACCTTGTCGGCA+GGG | - | chr2_2:16031021-16031040 | None:intergenic | 50.0% | |
| AAGAGAGATACCTTGTCGGC+AGG | - | chr2_2:16031022-16031041 | None:intergenic | 50.0% | |
| ! | AGTCTCTGATTCGAGCCTTG+TGG | + | chr2_2:16031179-16031198 | Msa0240680:intron | 50.0% |
| ! | TCTGATTCGAGCCTTGTGGA+TGG | + | chr2_2:16031183-16031202 | Msa0240680:intron | 50.0% |
| ! | CTGATTCGAGCCTTGTGGAT+GGG | + | chr2_2:16031184-16031203 | Msa0240680:intron | 50.0% |
| ! | TGATTCGAGCCTTGTGGATG+GGG | + | chr2_2:16031185-16031204 | Msa0240680:intron | 50.0% |
| CTAGTCTCTGTTTGGGAGCA+TGG | - | chr2_2:16031252-16031271 | None:intergenic | 50.0% | |
| !! | GCTGACGACTAGTCTCTGTT+TGG | - | chr2_2:16031260-16031279 | None:intergenic | 50.0% |
| GGCACAAGCTATCCTGTTGT+TGG | + | chr2_2:16031367-16031386 | Msa0240680:intron | 50.0% | |
| CACCATTCCTAGCCAACAAC+AGG | - | chr2_2:16031382-16031401 | None:intergenic | 50.0% | |
| GGCTAGGAATGGTGTATCAG+TGG | + | chr2_2:16031388-16031407 | Msa0240680:CDS | 50.0% | |
| ! | GCATTTGCAGGTTGACTCAC+GGG | - | chr2_2:16031461-16031480 | None:intergenic | 50.0% |
| TATGGGACTTGGATGACCAG+AGG | - | chr2_2:16031492-16031511 | None:intergenic | 50.0% | |
| GGCATTGCTAACAGGAGTGA+TGG | - | chr2_2:16031600-16031619 | None:intergenic | 50.0% | |
| TTGCGCCCCTTCAAATTGAG+GGG | + | chr2_2:16031961-16031980 | Msa0240680:intron | 50.0% | |
| ACACGCGCTAAGCGCATGTT+TGG | - | chr2_2:16029244-16029263 | None:intergenic | 55.0% | |
| ACATGCGCTTAGCGCGTGTT+TGG | + | chr2_2:16029245-16029264 | Msa0240680:intron | 55.0% | |
| CAAAGGGTTCGGGTGCACAA+TGG | + | chr2_2:16029626-16029645 | Msa0240680:CDS | 55.0% | |
| ! | CTACCCTTTCCGTGCTGTTC+AGG | + | chr2_2:16029813-16029832 | Msa0240680:intron | 55.0% |
| ! | GCACCAATGGTGGGAAGAGT+TGG | - | chr2_2:16030798-16030817 | None:intergenic | 55.0% |
| CATTCCAACGACGGCACCAA+TGG | - | chr2_2:16030811-16030830 | None:intergenic | 55.0% | |
| GACGGTACCCGCATAGAAGA+TGG | - | chr2_2:16030981-16031000 | None:intergenic | 55.0% | |
| CAATGACATCCCTGCCGACA+AGG | + | chr2_2:16031009-16031028 | Msa0240680:CDS | 55.0% | |
| CTAGTCGTCAGCAAAGTCGG+TGG | + | chr2_2:16031268-16031287 | Msa0240680:intron | 55.0% | |
| CAGACAGAACTTCAGGCACC+TGG | + | chr2_2:16031425-16031444 | Msa0240680:CDS | 55.0% | |
| GAACTTCAGGCACCTGGTGA+CGG | + | chr2_2:16031431-16031450 | Msa0240680:CDS | 55.0% | |
| TCGCATACTGGTGCACAGTC+AGG | + | chr2_2:16031521-16031540 | Msa0240680:CDS | 55.0% | |
| ACCTGACGCCAGCATGGTAA+TGG | - | chr2_2:16031645-16031664 | None:intergenic | 55.0% | |
| ATGCAGCGATACCTCAGGCT+CGG | + | chr2_2:16031807-16031826 | Msa0240680:intron | 55.0% | |
| AAGGATGCTTTCCGAGCCTG+AGG | - | chr2_2:16031821-16031840 | None:intergenic | 55.0% | |
| !! | TCAGGCTCGGAAAGCATCCT+TGG | + | chr2_2:16031820-16031839 | Msa0240680:CDS | 55.0% |
| CCAACGACGGCACCAATGGT+GGG | - | chr2_2:16030807-16030826 | None:intergenic | 60.0% | |
| TCCAACGACGGCACCAATGG+TGG | - | chr2_2:16030808-16030827 | None:intergenic | 60.0% | |
| GAGAGGATAGACCCCGCTGA+AGG | + | chr2_2:16031219-16031238 | Msa0240680:intron | 60.0% | |
| AGGATAGACCCCGCTGAAGG+TGG | + | chr2_2:16031222-16031241 | Msa0240680:intron | 60.0% | |
| ATGGCTGACCACCTTCAGCG+GGG | - | chr2_2:16031233-16031252 | None:intergenic | 60.0% | |
| CATGGCTGACCACCTTCAGC+GGG | - | chr2_2:16031234-16031253 | None:intergenic | 60.0% | |
| GCATGGCTGACCACCTTCAG+CGG | - | chr2_2:16031235-16031254 | None:intergenic | 60.0% | |
| GAGGAGGCTGGTGCATTTGC+AGG | - | chr2_2:16031473-16031492 | None:intergenic | 60.0% | |
| GCAAATGCACCAGCCTCCTC+TGG | + | chr2_2:16031473-16031492 | Msa0240680:CDS | 60.0% | |
| CTTGGATGACCAGAGGAGGC+TGG | - | chr2_2:16031485-16031504 | None:intergenic | 60.0% | |
| GGGACTTGGATGACCAGAGG+AGG | - | chr2_2:16031489-16031508 | None:intergenic | 60.0% | |
| ACTGGTGCACAGTCAGGCAG+TGG | + | chr2_2:16031527-16031546 | Msa0240680:CDS | 60.0% | |
| GGAGGCTCGGCATTGCTAAC+AGG | - | chr2_2:16031608-16031627 | None:intergenic | 60.0% | |
| GCCATTACCATGCTGGCGTC+AGG | + | chr2_2:16031641-16031660 | Msa0240680:CDS | 60.0% | |
| CAGCATACCTGACGCCAGCA+TGG | - | chr2_2:16031651-16031670 | None:intergenic | 60.0% | |
| CATGCTGGCGTCAGGTATGC+TGG | + | chr2_2:16031649-16031668 | Msa0240680:intron | 60.0% | |
| !! | CCCACCATTGGTGCCGTCGT+TGG | + | chr2_2:16030804-16030823 | Msa0240680:CDS | 65.0% |
| CTCACGGGCACACCGTCACC+AGG | - | chr2_2:16031446-16031465 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 16028756 | 16032374 | 16028756 | ID=Msa0240680;Name=Msa0240680 |
| chr2_2 | mRNA | 16028756 | 16032374 | 16028756 | ID=Msa0240680-mRNA-1;Parent=Msa0240680;Name=Msa0240680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=75|1|1|1|1|1|7|242|352 |
| chr2_2 | exon | 16028756 | 16028939 | 16028756 | ID=Msa0240680-mRNA-1:exon:6527;Parent=Msa0240680-mRNA-1 |
| chr2_2 | exon | 16029620 | 16029804 | 16029620 | ID=Msa0240680-mRNA-1:exon:6528;Parent=Msa0240680-mRNA-1 |
| chr2_2 | exon | 16030576 | 16030838 | 16030576 | ID=Msa0240680-mRNA-1:exon:6529;Parent=Msa0240680-mRNA-1 |
| chr2_2 | exon | 16030943 | 16031030 | 16030943 | ID=Msa0240680-mRNA-1:exon:6530;Parent=Msa0240680-mRNA-1 |
| chr2_2 | exon | 16031368 | 16031662 | 16031368 | ID=Msa0240680-mRNA-1:exon:6531;Parent=Msa0240680-mRNA-1 |
| chr2_2 | exon | 16031813 | 16031870 | 16031813 | ID=Msa0240680-mRNA-1:exon:6532;Parent=Msa0240680-mRNA-1 |
| chr2_2 | exon | 16032072 | 16032374 | 16032072 | ID=Msa0240680-mRNA-1:exon:6533;Parent=Msa0240680-mRNA-1 |
| chr2_2 | five_prime_UTR | 16028756 | 16028830 | 16028756 | ID=Msa0240680-mRNA-1:five_prime_utr;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16028831 | 16028939 | 16028831 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16029620 | 16029804 | 16029620 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16030576 | 16030838 | 16030576 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16030943 | 16031030 | 16030943 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16031368 | 16031662 | 16031368 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16031813 | 16031870 | 16031813 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | CDS | 16032072 | 16032132 | 16032072 | ID=Msa0240680-mRNA-1:cds;Parent=Msa0240680-mRNA-1 |
| chr2_2 | three_prime_UTR | 16032133 | 16032374 | 16032133 | ID=Msa0240680-mRNA-1:three_prime_utr;Parent=Msa0240680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
