AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0240710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240710 MtrunA17_Chr2g0291741 98.472 589 9 0 1 589 1 589 0.0 1191
Msa0240710 MtrunA17_Chr5g0442661 59.206 554 214 4 23 569 23 571 0.0 667
Msa0240710 MtrunA17_Chr2g0299621 44.000 575 284 12 5 566 9 558 7.94e-143 426
Msa0240710 MtrunA17_Chr7g0256321 34.545 385 223 10 44 403 6 386 9.72e-47 171
Msa0240710 MtrunA17_Chr1g0171771 32.812 384 230 9 44 403 6 385 1.50e-44 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240710 AT5G45110.1 63.080 539 185 6 33 561 24 558 0.0 674
Msa0240710 AT4G19660.1 62.113 549 186 8 44 582 34 570 0.0 644
Msa0240710 AT4G19660.2 59.201 576 186 9 44 582 34 597 0.0 630
Msa0240710 AT5G45110.2 61.818 495 176 6 33 521 24 511 0.0 603
Msa0240710 AT1G64280.1 40.602 532 298 7 41 564 42 563 7.24e-126 383
Msa0240710 AT4G26120.2 40.700 543 300 10 41 575 45 573 1.07e-123 377
Msa0240710 AT4G26120.1 40.700 543 300 10 41 575 44 572 1.60e-123 377
Msa0240710 AT3G57130.1 33.858 381 227 8 44 403 8 384 2.56e-50 181
Msa0240710 AT2G41370.1 33.756 394 227 10 39 403 3 391 5.81e-47 172
Msa0240710 AT3G57130.2 30.769 156 98 3 44 190 8 162 2.02e-16 78.2

Find 167 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGACTCTTTGCTCTTCT+TGG 0.133695 2_2:-16092558 None:intergenic
TGCAATGTCCATGGCTAATT+TGG 0.171363 2_2:-16092037 None:intergenic
GAACAAGCTGAGTTCTAATT+TGG 0.195265 2_2:+16088670 Msa0240710:CDS
ATTGATTCTGATTATGATTA+TGG 0.207555 2_2:+16088704 Msa0240710:CDS
AAAACAAGAGACTTATTTCT+AGG 0.255152 2_2:+16092157 Msa0240710:CDS
CAAATTAATTATGGCTAATT+CGG 0.260632 2_2:+16088526 Msa0240710:exon
TGTAATATACAGACTCTCTA+AGG 0.263790 2_2:-16092684 None:intergenic
ATAGATTCTCAAATTAATTA+TGG 0.268914 2_2:+16088517 Msa0240710:exon
TACCCCTCTTAAATATTTCA+TGG 0.278681 2_2:-16088802 None:intergenic
GAAAGCAAAAGTGTGAAATT+TGG 0.294295 2_2:-16087891 None:intergenic
GACCCGTGATTCTCTCTCTC+TGG 0.299382 2_2:+16087811 Msa0240710:five_prime_UTR
GTATAAGAAGATTATGTTAT+AGG 0.303050 2_2:+16088489 Msa0240710:five_prime_UTR
ATCCGAGTTTGCTGGTCTTT+CGG 0.306284 2_2:+16092074 Msa0240710:CDS
CTTGACTCTTTGCTCTTCTT+GGG 0.320433 2_2:-16092557 None:intergenic
TCGAGCACTTCCGAGCAATT+AGG 0.321539 2_2:-16092484 None:intergenic
TTTAAGAGGGGTAAAGATAA+AGG 0.330980 2_2:+16088812 Msa0240710:CDS
TGAAGTCCTTGGATTGGGTT+TGG 0.341454 2_2:+16090259 Msa0240710:CDS
AGACGTCTTCTTAACTTTGT+AGG 0.350294 2_2:+16089867 Msa0240710:CDS
GACTGTACGCGCGTAATAGA+TGG 0.351699 2_2:-16087581 None:intergenic
AAAATTCATCGGTGCATTCT+AGG 0.360553 2_2:+16088761 Msa0240710:CDS
CGAGCATGATCGGAGCCATT+AGG 0.362185 2_2:-16088626 None:intergenic
GTTTAGAGATTCTATATAAG+AGG 0.362602 2_2:+16088433 Msa0240710:five_prime_UTR
GTTATTAAGCAACTTTGGTT+TGG 0.364289 2_2:+16088185 Msa0240710:five_prime_UTR
AGGGCATATGTTGTGACTAA+TGG 0.365492 2_2:-16088606 None:intergenic
ATCGGTGCATTCTAGGTTCT+AGG 0.371950 2_2:+16088768 Msa0240710:CDS
TTGGTTTGATTATGCTGCTT+TGG 0.376289 2_2:+16088001 Msa0240710:five_prime_UTR
TTATGCTGCTTTGGTGGCTC+TGG 0.378132 2_2:+16088010 Msa0240710:five_prime_UTR
GTTTCTGAAGTCCTTGGATT+GGG 0.380733 2_2:+16090254 Msa0240710:CDS
TATCATTGTGGAGGGAATTC+CGG 0.388694 2_2:+16088736 Msa0240710:CDS
GATCCATGGAAATTACAAAA+AGG 0.395572 2_2:-16087862 None:intergenic
AAAGCTGAGTTTAGTCGCTC+TGG 0.402143 2_2:+16092634 Msa0240710:CDS
ACCCGTGATTCTCTCTCTCT+GGG 0.403225 2_2:+16087812 Msa0240710:five_prime_UTR
AAGGTTGTTTCTGAAGTCCT+TGG 0.404363 2_2:+16090248 Msa0240710:CDS
TGTTTCTGAAGTCCTTGGAT+TGG 0.413804 2_2:+16090253 Msa0240710:CDS
AATTCCCTCCACAATGATAT+CGG 0.420705 2_2:-16088732 None:intergenic
AGTTTCTGAAGGGAAAGAAA+TGG 0.423976 2_2:-16087754 None:intergenic
TACAAGTTATTAAGCAACTT+TGG 0.427786 2_2:+16088180 Msa0240710:five_prime_UTR
GTTTCTGAAGGGAAAGAAAT+GGG 0.430834 2_2:-16087753 None:intergenic
TCCACAGCAAAATTAATTGC+AGG 0.431240 2_2:-16089013 None:intergenic
TTTATCATATCTCACAATAG+AGG 0.435222 2_2:+16088411 Msa0240710:five_prime_UTR
TTCTCAAGGTAAAACAAATC+AGG 0.437786 2_2:-16092529 None:intergenic
TTGAGCGATTTGTTGCCTTA+TGG 0.438180 2_2:+16088869 Msa0240710:CDS
AGTCACAACATATGCCCTAA+TGG 0.443721 2_2:+16088611 Msa0240710:CDS
GCTCCGCCGCGACCTTCATC+AGG 0.443936 2_2:+16090052 Msa0240710:CDS
ATGGAAGCCCTGATGAAAAC+AGG 0.445853 2_2:+16092180 Msa0240710:CDS
GCTCTTTCTCAATTGAGATC+TGG 0.446362 2_2:-16089998 None:intergenic
GGAAGTGCTCGACAAGTTCA+TGG 0.446634 2_2:+16092495 Msa0240710:CDS
TAGTATCGCTTCTTACGAAA+GGG 0.448428 2_2:+16090357 Msa0240710:CDS
TCATCTTCGCACTTGTCAAA+TGG 0.450698 2_2:+16088581 Msa0240710:CDS
GTGGTGGGTGTCAGTCGAGA+TGG 0.451143 2_2:+16092447 Msa0240710:intron
AGAGTGCTGTTAGTATTTGT+AGG 0.451754 2_2:+16090411 Msa0240710:CDS
GACGTCTTCTTAACTTTGTA+GGG 0.452305 2_2:+16089868 Msa0240710:CDS
GAGACAACATCCGAGTTTGC+TGG 0.452844 2_2:+16092066 Msa0240710:CDS
TCATAACCAACTTTGCCATA+AGG 0.458550 2_2:-16088884 None:intergenic
GCTGGTCTTTCGGCATCAAA+AGG 0.459478 2_2:+16092084 Msa0240710:CDS
AGAAGCGATACTATAATTGA+AGG 0.460936 2_2:-16090347 None:intergenic
CTCGAGGTTACGAGCATGAT+CGG 0.461902 2_2:-16088636 None:intergenic
GAGCATGATCGGAGCCATTA+GGG 0.467051 2_2:-16088625 None:intergenic
TGGTGGGTGTCAGTCGAGAT+GGG 0.469353 2_2:+16092448 Msa0240710:intron
GTTTGGCTAATGTCAATCTT+CGG 0.472297 2_2:+16090276 Msa0240710:CDS
AGGGACAAGGTGTCCACTAC+AGG 0.473770 2_2:-16090092 None:intergenic
AAAGGATTGTCGAAGAATGA+AGG 0.474320 2_2:+16088830 Msa0240710:CDS
ATAACACAAATCTGAACAAA+TGG 0.476724 2_2:-16088308 None:intergenic
AGGACTTCAGAAACAACCTT+AGG 0.477204 2_2:-16090245 None:intergenic
GTTTGATTATGCTGCTTTGG+TGG 0.482700 2_2:+16088004 Msa0240710:five_prime_UTR
CTTTGTAGGGAAGGCTCTTG+TGG 0.482823 2_2:+16089881 Msa0240710:CDS
CAAGAGACTTATTTCTAGGA+TGG 0.483421 2_2:+16092161 Msa0240710:CDS
TGCCACCCTGTCAACACATT+GGG 0.487059 2_2:-16089961 None:intergenic
AGTAATCAGAGTGAGAAAAG+AGG 0.492268 2_2:-16087684 None:intergenic
CTTCTTGGGTGCCCTTCTCA+AGG 0.494673 2_2:-16092543 None:intergenic
AGGTTCAAACGGAAACTTAA+GGG 0.497387 2_2:+16092104 Msa0240710:CDS
TTTCCATGAAATATTTAAGA+GGG 0.500978 2_2:+16088799 Msa0240710:CDS
TTGTTGCCTTATGGCAAAGT+TGG 0.501023 2_2:+16088878 Msa0240710:CDS
AAGGTTCAAACGGAAACTTA+AGG 0.501661 2_2:+16092103 Msa0240710:CDS
AGAAATGCGAAGGAATCCTT+TGG 0.503336 2_2:+16090523 Msa0240710:CDS
TTCTTGAGCTATGCATATAG+TGG 0.505104 2_2:+16088920 Msa0240710:CDS
TACGAAAGGGGCTTGTGCAT+CGG 0.506556 2_2:+16090370 Msa0240710:CDS
CAAGAACATCAATGCATATC+CGG 0.508900 2_2:-16090496 None:intergenic
TCGGCATCAAAAGGTTCAAA+CGG 0.510189 2_2:+16092093 Msa0240710:CDS
GCATCGGATTTGACTTTCGA+TGG 0.514017 2_2:+16090386 Msa0240710:CDS
ATATTTGACAACGAAAATGA+AGG 0.517126 2_2:-16092851 None:intergenic
TGTTGACAGGGTGGCACGAT+CGG 0.523329 2_2:+16089968 Msa0240710:CDS
ATAGTATCGCTTCTTACGAA+AGG 0.524638 2_2:+16090356 Msa0240710:CDS
AAGCTGAGTTTAGTCGCTCT+GGG 0.526051 2_2:+16092635 Msa0240710:CDS
TGCCGAAAGACCAGCAAACT+CGG 0.526961 2_2:-16092076 None:intergenic
CACTAGAATTCACAAGGCAT+TGG 0.529760 2_2:+16090124 Msa0240710:CDS
TCGTTGCCCAATGTGTTGAC+AGG 0.532941 2_2:+16089955 Msa0240710:CDS
ATGGCTAATTTGGCTTCCAA+AGG 0.534107 2_2:-16092027 None:intergenic
GCGCTACTTTCCTAATTGCT+CGG 0.534492 2_2:+16092474 Msa0240710:CDS
CTCTGCACGTGCAATGTCCA+TGG 0.539317 2_2:-16092046 None:intergenic
TGGCTAATTTGGCTTCCAAA+GGG 0.539806 2_2:-16092026 None:intergenic
TCACATTGCTGCCATGCGTA+AGG 0.540227 2_2:+16090322 Msa0240710:CDS
CGAGTTGATTCAATTGACAA+TGG 0.543054 2_2:-16089935 None:intergenic
GACATTACTTTAGATGAAGC+CGG 0.544833 2_2:+16090191 Msa0240710:CDS
CACAGTGGGCTACTGCATAG+TGG 0.545838 2_2:-16090220 None:intergenic
TCTTCTTAACTTTGTAGGGA+AGG 0.546009 2_2:+16089872 Msa0240710:CDS
CATCATCCTGATGAAGGTCG+CGG 0.548121 2_2:-16090058 None:intergenic
ACACATGTAGACACCTCCAT+TGG 0.548193 2_2:-16088959 None:intergenic
AGTAGCCCACTGTGACCCTA+AGG 0.552063 2_2:+16090229 Msa0240710:CDS
AGATGTCATTTCAATCCTCA+TGG 0.554111 2_2:+16089905 Msa0240710:CDS
GGAAAGAAACAAATAAAGAC+CGG 0.554242 2_2:+16090477 Msa0240710:CDS
TATTTGACAACGAAAATGAA+GGG 0.558694 2_2:-16092850 None:intergenic
ACCCAGAGAGAGAGAATCAC+GGG 0.560087 2_2:-16087813 None:intergenic
GTGCCACCCTGTCAACACAT+TGG 0.560724 2_2:-16089962 None:intergenic
GGACTTCAGAAACAACCTTA+GGG 0.562265 2_2:-16090244 None:intergenic
GTCAATCTTCGGAATTCTCG+AGG 0.563292 2_2:+16090287 Msa0240710:CDS
GGGTGTCAGTCGAGATGGGG+CGG 0.570433 2_2:+16092452 Msa0240710:intron
TCACCATACCTCTGTTCTCA+AGG 0.571825 2_2:-16090607 None:intergenic
TTTAGAGATTCTATATAAGA+GGG 0.573036 2_2:+16088434 Msa0240710:five_prime_UTR
AAGGATTGTCGAAGAATGAA+GGG 0.575680 2_2:+16088831 Msa0240710:CDS
GTGCTGTTAGTATTTGTAGG+AGG 0.578982 2_2:+16090414 Msa0240710:CDS
TTTGGAAGCCAAATTAGCCA+TGG 0.582434 2_2:+16092029 Msa0240710:CDS
TAGGAGGTTGACGAGGCCAA+AGG 0.585498 2_2:+16090430 Msa0240710:CDS
TTCCATGAAATATTTAAGAG+GGG 0.588302 2_2:+16088800 Msa0240710:CDS
AAGAAGAGCAAAGAGTCAAG+AGG 0.588632 2_2:+16092560 Msa0240710:CDS
TAGAGAGTCTGTATATTACA+AGG 0.594151 2_2:+16092687 Msa0240710:CDS
TAAACTTAAACCCTCTCCAA+TGG 0.595072 2_2:+16088943 Msa0240710:CDS
GTAATATACAGACTCTCTAA+GGG 0.597244 2_2:-16092683 None:intergenic
GGTGGGTGTCAGTCGAGATG+GGG 0.597335 2_2:+16092449 Msa0240710:intron
GACAACGAAAATGAAGGGAT+AGG 0.598751 2_2:-16092845 None:intergenic
AGACTCTCTAAGGGATGAAG+AGG 0.598944 2_2:-16092674 None:intergenic
AGTATCGCTTCTTACGAAAG+GGG 0.605200 2_2:+16090358 Msa0240710:CDS
CTGAAGGGAAAGAAATGGGA+AGG 0.608486 2_2:-16087749 None:intergenic
TGGAAAAGTGATACCAACTC+TGG 0.609116 2_2:-16089067 None:intergenic
AACCCAGAGAGAGAGAATCA+CGG 0.611755 2_2:-16087814 None:intergenic
GTTTGTGCTCATGATGCTTG+CGG 0.612341 2_2:+16088989 Msa0240710:CDS
TTCTTGAAAGAGAAATGCGA+AGG 0.612843 2_2:+16090513 Msa0240710:CDS
GAATTCCGGTGAAAATTCAT+CGG 0.614156 2_2:+16088750 Msa0240710:CDS
CTGAGACATTCAACATATCG+TGG 0.614995 2_2:-16087656 None:intergenic
TCTCAATTGAGATCTGGTCA+AGG 0.616130 2_2:-16089992 None:intergenic
CAAGGTACAAAAGCTTCATG+TGG 0.618221 2_2:-16090589 None:intergenic
AAATTTGGTAATGAGATCCA+TGG 0.621511 2_2:-16087876 None:intergenic
CTCTGTGTCTTCCCACACAG+TGG 0.626716 2_2:+16090556 Msa0240710:CDS
CAAGGTAAAACAAATCAGGT+AGG 0.633426 2_2:-16092525 None:intergenic
AATTGAAGGCTCCTTACGCA+TGG 0.634465 2_2:-16090333 None:intergenic
GTAGACACCTCCATTGGAGA+GGG 0.634552 2_2:-16088953 None:intergenic
TGAAAACGATGCTCCTGTAG+TGG 0.635923 2_2:+16090079 Msa0240710:CDS
ACTTAAACCCTCTCCAATGG+AGG 0.636356 2_2:+16088946 Msa0240710:CDS
TGTTCAAACTTATAACCTCG+AGG 0.641337 2_2:-16088652 None:intergenic
CATTAGCCAAACCCAATCCA+AGG 0.650504 2_2:-16090265 None:intergenic
ACAGAGGGATCTGTAGCCAA+AGG 0.651194 2_2:-16090539 None:intergenic
CGTTGCCCAATGTGTTGACA+GGG 0.652588 2_2:+16089956 Msa0240710:CDS
AACAACCTTAGGGTCACAGT+GGG 0.652928 2_2:-16090234 None:intergenic
TCAATCTTCGGAATTCTCGA+GGG 0.655049 2_2:+16090288 Msa0240710:CDS
TACTGCATAGTGGAGAGCAC+CGG 0.657134 2_2:-16090210 None:intergenic
GCTTAAAGATGATGTCAACA+AGG 0.657265 2_2:+16092597 Msa0240710:CDS
ATCATGTGTTATGTGACGTG+AGG 0.662303 2_2:+16088274 Msa0240710:five_prime_UTR
ACGAATCACTAGAATTCACA+AGG 0.672729 2_2:+16090118 Msa0240710:CDS
GACAATGGAAAGCAACCATG+AGG 0.674409 2_2:-16089920 None:intergenic
CACTGTGTGGGAAGACACAG+AGG 0.675475 2_2:-16090555 None:intergenic
TGTAGACACCTCCATTGGAG+AGG 0.677893 2_2:-16088954 None:intergenic
TTCAAACGGAAACTTAAGGG+AGG 0.682937 2_2:+16092107 Msa0240710:CDS
GTATTTGTAGGAGGTTGACG+AGG 0.688711 2_2:+16090423 Msa0240710:CDS
TGATGCCGATATCATTGTGG+AGG 0.689812 2_2:+16088727 Msa0240710:CDS
GTACGCGCGTAATAGATGGA+TGG 0.690424 2_2:-16087577 None:intergenic
GAGATCATCAGCCACTGTGT+GGG 0.692384 2_2:-16090567 None:intergenic
TGCCCAATGTGTTGACAGGG+TGG 0.694625 2_2:+16089959 Msa0240710:CDS
CGATCATGCTCGTAACCTCG+AGG 0.695662 2_2:+16088637 Msa0240710:CDS
ATTATTGCTCAAAGACGACG+AGG 0.703909 2_2:-16088555 None:intergenic
GGAGATCATCAGCCACTGTG+TGG 0.705139 2_2:-16090568 None:intergenic
TGGTGATGCCGATATCATTG+TGG 0.710168 2_2:+16088724 Msa0240710:CDS
GATGCCGATATCATTGTGGA+GGG 0.714650 2_2:+16088728 Msa0240710:CDS
AAACAACCTTAGGGTCACAG+TGG 0.718165 2_2:-16090235 None:intergenic
ACTGTGTGGGAAGACACAGA+GGG 0.734076 2_2:-16090554 None:intergenic
CATCCTGATGAAGGTCGCGG+CGG 0.747920 2_2:-16090055 None:intergenic
TTATTGCTCAAAGACGACGA+GGG 0.757926 2_2:-16088554 None:intergenic
AGTGCTCGACAAGTTCATGG+AGG 0.770013 2_2:+16092498 Msa0240710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAGATTAATTGATA+AGG - chr2_2:16088051-16088070 None:intergenic 10.0%
!! ACAGAAAATTAAAAAAAAAA+AGG - chr2_2:16091830-16091849 None:intergenic 10.0%
!!! ATTTTGTTTTCTTCAATTTT+GGG + chr2_2:16087977-16087996 Msa0240710:five_prime_UTR 15.0%
!! ATAGATTCTCAAATTAATTA+TGG + chr2_2:16088517-16088536 Msa0240710:exon 15.0%
!!! AATTATTATCAGATACTTTT+TGG + chr2_2:16089287-16089306 Msa0240710:intron 15.0%
!!! TCTTTTATTTTTGAAGTATT+TGG + chr2_2:16089366-16089385 Msa0240710:intron 15.0%
!!! CTTTTATTTTTGAAGTATTT+GGG + chr2_2:16089367-16089386 Msa0240710:intron 15.0%
!!! TTTTTTTAATTTTCTGTTTC+AGG + chr2_2:16091833-16091852 Msa0240710:intron 15.0%
!! TTTATAGTGCAAAAATTAAA+AGG + chr2_2:16092767-16092786 Msa0240710:three_prime_UTR 15.0%
!! TTATAGTGCAAAAATTAAAA+GGG + chr2_2:16092768-16092787 Msa0240710:three_prime_UTR 15.0%
!!! GATTTTGTTTTCTTCAATTT+TGG + chr2_2:16087976-16087995 Msa0240710:five_prime_UTR 20.0%
!!! TGTTATTAAGGAACTTTTTT+TGG + chr2_2:16088156-16088175 Msa0240710:five_prime_UTR 20.0%
!! TTTAGAGATTCTATATAAGA+GGG + chr2_2:16088434-16088453 Msa0240710:five_prime_UTR 20.0%
!! GTATAAGAAGATTATGTTAT+AGG + chr2_2:16088489-16088508 Msa0240710:five_prime_UTR 20.0%
!! CAAATTAATTATGGCTAATT+CGG + chr2_2:16088526-16088545 Msa0240710:exon 20.0%
!!! ATTGATTCTGATTATGATTA+TGG + chr2_2:16088704-16088723 Msa0240710:CDS 20.0%
!!! TTTTCCATGAAATATTTAAG+AGG + chr2_2:16088798-16088817 Msa0240710:CDS 20.0%
!! TTTCCATGAAATATTTAAGA+GGG + chr2_2:16088799-16088818 Msa0240710:CDS 20.0%
!! ATATAGAAAAATGTTCAAGT+GGG - chr2_2:16089414-16089433 None:intergenic 20.0%
!! ATAATATAGAGAAAACAGAA+AGG - chr2_2:16089439-16089458 None:intergenic 20.0%
!!! ATGAAATTTAGTTCAAGTTT+AGG + chr2_2:16089457-16089476 Msa0240710:intron 20.0%
!! GGAATAATTAATTATCTGTT+AGG + chr2_2:16089478-16089497 Msa0240710:intron 20.0%
!!! TAAGAAATTTGTTTTGGAAA+AGG - chr2_2:16089610-16089629 None:intergenic 20.0%
!!! GTATAGTAAGAAATTTGTTT+TGG - chr2_2:16089616-16089635 None:intergenic 20.0%
!!! TTTACTTTTGTTGATTTTGA+AGG + chr2_2:16089663-16089682 Msa0240710:intron 20.0%
!!! TTACTTTTGTTGATTTTGAA+GGG + chr2_2:16089664-16089683 Msa0240710:intron 20.0%
!!! AAATAAAATGACTCAGTTTT+GGG - chr2_2:16090732-16090751 None:intergenic 20.0%
!!! AAAATAAAATGACTCAGTTT+TGG - chr2_2:16090733-16090752 None:intergenic 20.0%
!! AAACAAAAAAACTCCAAAAT+GGG - chr2_2:16090818-16090837 None:intergenic 20.0%
!! AAGAACCACTTAAAATTTAT+GGG + chr2_2:16090856-16090875 Msa0240710:intron 20.0%
!! AGTTCAAAATTACATAAAGT+TGG - chr2_2:16090980-16090999 None:intergenic 20.0%
!!! TTTTAAACAATATTTTCCCA+AGG - chr2_2:16091359-16091378 None:intergenic 20.0%
!! TATTTAATAGTATCCTCTTA+TGG + chr2_2:16092220-16092239 Msa0240710:intron 20.0%
!!! TTTTACAATTTTACATGAGT+TGG - chr2_2:16092803-16092822 None:intergenic 20.0%
! AAAAAGAAGAAGTTTCTGAA+GGG - chr2_2:16087767-16087786 None:intergenic 25.0%
! AAAAAAGAAGAAGTTTCTGA+AGG - chr2_2:16087768-16087787 None:intergenic 25.0%
!!! GAACAAATTAAGCACTTTTT+TGG + chr2_2:16088133-16088152 Msa0240710:five_prime_UTR 25.0%
! TACAAGTTATTAAGCAACTT+TGG + chr2_2:16088180-16088199 Msa0240710:five_prime_UTR 25.0%
! ATAACACAAATCTGAACAAA+TGG - chr2_2:16088311-16088330 None:intergenic 25.0%
! TTTATCATATCTCACAATAG+AGG + chr2_2:16088411-16088430 Msa0240710:five_prime_UTR 25.0%
! GTTTAGAGATTCTATATAAG+AGG + chr2_2:16088433-16088452 Msa0240710:five_prime_UTR 25.0%
!!! TGTATAAAGTTTGAGTTTTG+TGG + chr2_2:16088467-16088486 Msa0240710:five_prime_UTR 25.0%
! TTCCATGAAATATTTAAGAG+GGG + chr2_2:16088800-16088819 Msa0240710:CDS 25.0%
! TCATAGATATAATGTTTACC+TGG - chr2_2:16089090-16089109 None:intergenic 25.0%
!! AAGATGTATTTGAGAAGTAT+TGG + chr2_2:16089235-16089254 Msa0240710:intron 25.0%
! TATAGAAAAATGTTCAAGTG+GGG - chr2_2:16089413-16089432 None:intergenic 25.0%
! CATATAGAAAAATGTTCAAG+TGG - chr2_2:16089415-16089434 None:intergenic 25.0%
! AATCATCATACAAAACATCT+TGG - chr2_2:16089522-16089541 None:intergenic 25.0%
!!! TACTTTTGTTGATTTTGAAG+GGG + chr2_2:16089665-16089684 Msa0240710:intron 25.0%
!! AATTCTAGTGATTCGTTTTA+GGG - chr2_2:16090114-16090133 None:intergenic 25.0%
! CAAACAAAAAAACTCCAAAA+TGG - chr2_2:16090819-16090838 None:intergenic 25.0%
! GAAGAACCACTTAAAATTTA+TGG + chr2_2:16090855-16090874 Msa0240710:intron 25.0%
!! CAAAACCCATAAATTTTAAG+TGG - chr2_2:16090864-16090883 None:intergenic 25.0%
! ATTTAGCTACAAATGAAACA+AGG - chr2_2:16091667-16091686 None:intergenic 25.0%
!! AAAACAAGAGACTTATTTCT+AGG + chr2_2:16092157-16092176 Msa0240710:CDS 25.0%
! TAGAATTGTACATAGAAACA+TGG - chr2_2:16092401-16092420 None:intergenic 25.0%
! TATTTGACAACGAAAATGAA+GGG - chr2_2:16092853-16092872 None:intergenic 25.0%
! ATATTTGACAACGAAAATGA+AGG - chr2_2:16092854-16092873 None:intergenic 25.0%
TCAAGAGAGAAAAAGTCAAA+GGG - chr2_2:16087793-16087812 None:intergenic 30.0%
CATGGAAATTACAAAAAGGT+TGG - chr2_2:16087861-16087880 None:intergenic 30.0%
! CAACCTTTTTGTAATTTCCA+TGG + chr2_2:16087859-16087878 Msa0240710:five_prime_UTR 30.0%
GATCCATGGAAATTACAAAA+AGG - chr2_2:16087865-16087884 None:intergenic 30.0%
!! AAATTTGGTAATGAGATCCA+TGG - chr2_2:16087879-16087898 None:intergenic 30.0%
! GAAAGCAAAAGTGTGAAATT+TGG - chr2_2:16087894-16087913 None:intergenic 30.0%
! AATTTCACACTTTTGCTTTC+TGG + chr2_2:16087894-16087913 Msa0240710:five_prime_UTR 30.0%
! ATTTCACACTTTTGCTTTCT+GGG + chr2_2:16087895-16087914 Msa0240710:five_prime_UTR 30.0%
!!! GTTTTCTTCAATTTTGGGTT+TGG + chr2_2:16087982-16088001 Msa0240710:five_prime_UTR 30.0%
!!! GCACTTTTTTGGTGTTATTA+AGG + chr2_2:16088144-16088163 Msa0240710:five_prime_UTR 30.0%
GTTATTAAGCAACTTTGGTT+TGG + chr2_2:16088185-16088204 Msa0240710:five_prime_UTR 30.0%
TACCCCTCTTAAATATTTCA+TGG - chr2_2:16088805-16088824 None:intergenic 30.0%
TTTAAGAGGGGTAAAGATAA+AGG + chr2_2:16088812-16088831 Msa0240710:CDS 30.0%
TGGTATTTGAAAAATGGAAG+AGG - chr2_2:16089050-16089069 None:intergenic 30.0%
CAACTCTGGTATTTGAAAAA+TGG - chr2_2:16089056-16089075 None:intergenic 30.0%
!! CATTTTTCAAATACCAGAGT+TGG + chr2_2:16089054-16089073 Msa0240710:CDS 30.0%
TCTATTGTTAGTTAGACGTA+CGG + chr2_2:16089151-16089170 Msa0240710:intron 30.0%
ATAGAAAAATGTTCAAGTGG+GGG - chr2_2:16089412-16089431 None:intergenic 30.0%
TTGTATGATGATTCAGAACA+TGG + chr2_2:16089529-16089548 Msa0240710:intron 30.0%
TGTATGATGATTCAGAACAT+GGG + chr2_2:16089530-16089549 Msa0240710:intron 30.0%
CCTAAAGAAAGCAAGATATA+TGG - chr2_2:16089719-16089738 None:intergenic 30.0%
CCATATATCTTGCTTTCTTT+AGG + chr2_2:16089716-16089735 Msa0240710:intron 30.0%
TTGCTTTCTTTAGGCATAAT+TGG + chr2_2:16089725-16089744 Msa0240710:intron 30.0%
CATAATTGGCATCTTATGTT+GGG + chr2_2:16089739-16089758 Msa0240710:intron 30.0%
AGTCATATTGTATCTGATCA+AGG + chr2_2:16089804-16089823 Msa0240710:intron 30.0%
GTCATATTGTATCTGATCAA+GGG + chr2_2:16089805-16089824 Msa0240710:intron 30.0%
!! AACTTTTTCTGAGAGTTCAT+GGG - chr2_2:16090027-16090046 None:intergenic 30.0%
!! TAACTTTTTCTGAGAGTTCA+TGG - chr2_2:16090028-16090047 None:intergenic 30.0%
! GAATTCTAGTGATTCGTTTT+AGG - chr2_2:16090115-16090134 None:intergenic 30.0%
AGAAGCGATACTATAATTGA+AGG - chr2_2:16090350-16090369 None:intergenic 30.0%
! GTTTTTGTGTGATAATCCTT+TGG - chr2_2:16090449-16090468 None:intergenic 30.0%
TATCACACAAAAACAGAACA+AGG + chr2_2:16090455-16090474 Msa0240710:CDS 30.0%
ATCACACAAAAACAGAACAA+GGG + chr2_2:16090456-16090475 Msa0240710:CDS 30.0%
GGAAAGAAACAAATAAAGAC+CGG + chr2_2:16090477-16090496 Msa0240710:CDS 30.0%
TTTGGGAAATTTCCATTCAA+AGG - chr2_2:16090715-16090734 None:intergenic 30.0%
TCAGAGAATTTAGATAGTTC+TGG + chr2_2:16090999-16091018 Msa0240710:intron 30.0%
!! TAGATAGTTCTGGAAATGTA+AGG + chr2_2:16091009-16091028 Msa0240710:intron 30.0%
CTAAAGTTTCATCTAGCAAA+AGG + chr2_2:16091085-16091104 Msa0240710:intron 30.0%
TAAAACCTTCAGCAGAAAAT+TGG - chr2_2:16091132-16091151 None:intergenic 30.0%
CAATCTTACCTTGCAATTAA+AGG - chr2_2:16091228-16091247 None:intergenic 30.0%
AATATAGCTTAGAGCATGAA+AGG + chr2_2:16091420-16091439 Msa0240710:intron 30.0%
ATATAGCTTAGAGCATGAAA+GGG + chr2_2:16091421-16091440 Msa0240710:intron 30.0%
AGTCAACATGAAAATCTCTT+TGG - chr2_2:16091691-16091710 None:intergenic 30.0%
!! TGAATTTTTCAGCCATATGA+AGG - chr2_2:16091788-16091807 None:intergenic 30.0%
TTCATATGGCTGAAAAATTC+AGG + chr2_2:16091787-16091806 Msa0240710:intron 30.0%
AATACCAGCATAAATAAGAC+AGG - chr2_2:16091859-16091878 None:intergenic 30.0%
CTGATTTACTATGTTTGTGT+TGG + chr2_2:16091931-16091950 Msa0240710:intron 30.0%
CAGCAATGCTTATTATTTGA+TGG - chr2_2:16091974-16091993 None:intergenic 30.0%
!!! AGTCTCTTGTTTTGCATTAT+GGG - chr2_2:16092150-16092169 None:intergenic 30.0%
!!! AAGTCTCTTGTTTTGCATTA+TGG - chr2_2:16092151-16092170 None:intergenic 30.0%
TCTCTATAACGATGTGTATT+CGG + chr2_2:16092284-16092303 Msa0240710:intron 30.0%
AAATCAATCAGAGAATCAGA+TGG - chr2_2:16092339-16092358 None:intergenic 30.0%
TTCTCAAGGTAAAACAAATC+AGG - chr2_2:16092532-16092551 None:intergenic 30.0%
!!! TGATTTGTTTTACCTTGAGA+AGG + chr2_2:16092531-16092550 Msa0240710:CDS 30.0%
!!! GATTTGTTTTACCTTGAGAA+GGG + chr2_2:16092532-16092551 Msa0240710:CDS 30.0%
GTAATATACAGACTCTCTAA+GGG - chr2_2:16092686-16092705 None:intergenic 30.0%
TGTAATATACAGACTCTCTA+AGG - chr2_2:16092687-16092706 None:intergenic 30.0%
TAGAGAGTCTGTATATTACA+AGG + chr2_2:16092687-16092706 Msa0240710:CDS 30.0%
!!! ACAATTTTACATGAGTTGGT+GGG - chr2_2:16092799-16092818 None:intergenic 30.0%
!! TACAATTTTACATGAGTTGG+TGG - chr2_2:16092800-16092819 None:intergenic 30.0%
AGTAATCAGAGTGAGAAAAG+AGG - chr2_2:16087687-16087706 None:intergenic 35.0%
! GTTTCTGAAGGGAAAGAAAT+GGG - chr2_2:16087756-16087775 None:intergenic 35.0%
! AGTTTCTGAAGGGAAAGAAA+TGG - chr2_2:16087757-16087776 None:intergenic 35.0%
GTCAAGAGAGAAAAAGTCAA+AGG - chr2_2:16087794-16087813 None:intergenic 35.0%
! TTGGTTTGATTATGCTGCTT+TGG + chr2_2:16088001-16088020 Msa0240710:five_prime_UTR 35.0%
! TGTGTACTCTTGGAATTTTG+TGG + chr2_2:16088238-16088257 Msa0240710:five_prime_UTR 35.0%
TGTTCAAACTTATAACCTCG+AGG - chr2_2:16088655-16088674 None:intergenic 35.0%
! GAACAAGCTGAGTTCTAATT+TGG + chr2_2:16088670-16088689 Msa0240710:CDS 35.0%
AATTCCCTCCACAATGATAT+CGG - chr2_2:16088735-16088754 None:intergenic 35.0%
GAATTCCGGTGAAAATTCAT+CGG + chr2_2:16088750-16088769 Msa0240710:CDS 35.0%
AAAATTCATCGGTGCATTCT+AGG + chr2_2:16088761-16088780 Msa0240710:CDS 35.0%
AAAGGATTGTCGAAGAATGA+AGG + chr2_2:16088830-16088849 Msa0240710:CDS 35.0%
AAGGATTGTCGAAGAATGAA+GGG + chr2_2:16088831-16088850 Msa0240710:CDS 35.0%
TCATAACCAACTTTGCCATA+AGG - chr2_2:16088887-16088906 None:intergenic 35.0%
TTCTTGAGCTATGCATATAG+TGG + chr2_2:16088920-16088939 Msa0240710:CDS 35.0%
TAAACTTAAACCCTCTCCAA+TGG + chr2_2:16088943-16088962 Msa0240710:CDS 35.0%
! ACCTGCAATTAATTTTGCTG+TGG + chr2_2:16089012-16089031 Msa0240710:CDS 35.0%
TCCACAGCAAAATTAATTGC+AGG - chr2_2:16089016-16089035 None:intergenic 35.0%
!! GATACTTTTTGGACACGTAT+CGG + chr2_2:16089298-16089317 Msa0240710:intron 35.0%
!! ATACTTTTTGGACACGTATC+GGG + chr2_2:16089299-16089318 Msa0240710:intron 35.0%
TATCAGTATCCGATATGTGT+CGG + chr2_2:16089336-16089355 Msa0240710:intron 35.0%
GCATAATTGGCATCTTATGT+TGG + chr2_2:16089738-16089757 Msa0240710:intron 35.0%
CATCTTATGTTGGGCATATT+TGG + chr2_2:16089748-16089767 Msa0240710:intron 35.0%
ATTGTATCTGATCAAGGGTA+AGG + chr2_2:16089810-16089829 Msa0240710:intron 35.0%
AGACGTCTTCTTAACTTTGT+AGG + chr2_2:16089867-16089886 Msa0240710:CDS 35.0%
GACGTCTTCTTAACTTTGTA+GGG + chr2_2:16089868-16089887 Msa0240710:CDS 35.0%
TCTTCTTAACTTTGTAGGGA+AGG + chr2_2:16089872-16089891 Msa0240710:CDS 35.0%
! AGATGTCATTTCAATCCTCA+TGG + chr2_2:16089905-16089924 Msa0240710:CDS 35.0%
!! CGAGTTGATTCAATTGACAA+TGG - chr2_2:16089938-16089957 None:intergenic 35.0%
!! ACTTTTTCTGAGAGTTCATG+GGG - chr2_2:16090026-16090045 None:intergenic 35.0%
ACGAATCACTAGAATTCACA+AGG + chr2_2:16090118-16090137 Msa0240710:CDS 35.0%
GACATTACTTTAGATGAAGC+CGG + chr2_2:16090191-16090210 Msa0240710:CDS 35.0%
GTTTGGCTAATGTCAATCTT+CGG + chr2_2:16090276-16090295 Msa0240710:CDS 35.0%
ATAGTATCGCTTCTTACGAA+AGG + chr2_2:16090356-16090375 Msa0240710:CDS 35.0%
TAGTATCGCTTCTTACGAAA+GGG + chr2_2:16090357-16090376 Msa0240710:CDS 35.0%
!! AGAGTGCTGTTAGTATTTGT+AGG + chr2_2:16090411-16090430 Msa0240710:CDS 35.0%
CAAGAACATCAATGCATATC+CGG - chr2_2:16090499-16090518 None:intergenic 35.0%
TTCTTGAAAGAGAAATGCGA+AGG + chr2_2:16090513-16090532 Msa0240710:CDS 35.0%
GAACATAAGCAAGAAGTTGA+AGG - chr2_2:16090637-16090656 None:intergenic 35.0%
TGTTCCATATATTGTTGTCG+TGG + chr2_2:16090652-16090671 Msa0240710:intron 35.0%
TGATCCACGACAACAATATA+TGG - chr2_2:16090659-16090678 None:intergenic 35.0%
GAAATTTCCATTCAAAGGCA+TGG - chr2_2:16090710-16090729 None:intergenic 35.0%
TGTTTGTGAAAAATGCCACT+CGG + chr2_2:16090833-16090852 Msa0240710:intron 35.0%
AATAAAGCTGGCAAATCCAA+TGG - chr2_2:16090932-16090951 None:intergenic 35.0%
!!! GCCAGCTTTATTGATTTTCA+CGG + chr2_2:16090940-16090959 Msa0240710:intron 35.0%
ACCGTGAAAATCAATAAAGC+TGG - chr2_2:16090944-16090963 None:intergenic 35.0%
ATTCACAAGTTACCGCATTA+GGG + chr2_2:16091053-16091072 Msa0240710:intron 35.0%
TCATCTAGCAAAAGGAATTC+AGG + chr2_2:16091093-16091112 Msa0240710:intron 35.0%
ATTAGCGTCCTTTAATTGCA+AGG + chr2_2:16091217-16091236 Msa0240710:intron 35.0%
TTACTATAAAGCTCCTTCCA+TGG - chr2_2:16091291-16091310 None:intergenic 35.0%
!!! AGTAACAGGTTGCTGTTTTT+AGG + chr2_2:16091306-16091325 Msa0240710:intron 35.0%
!!! GTAACAGGTTGCTGTTTTTA+GGG + chr2_2:16091307-16091326 Msa0240710:intron 35.0%
GAAGAAGTCTTAACTGAGTA+AGG + chr2_2:16091449-16091468 Msa0240710:intron 35.0%
! GAAGAAGTTCTTGATGCTTT+TGG + chr2_2:16091607-16091626 Msa0240710:intron 35.0%
!! ATTTTTCAGCCATATGAAGG+TGG - chr2_2:16091785-16091804 None:intergenic 35.0%
TTCCAAAGGGAAAAATAGTC+TGG - chr2_2:16092016-16092035 None:intergenic 35.0%
AAGGTTCAAACGGAAACTTA+AGG + chr2_2:16092103-16092122 Msa0240710:CDS 35.0%
AGGTTCAAACGGAAACTTAA+GGG + chr2_2:16092104-16092123 Msa0240710:CDS 35.0%
!! CAAGAGACTTATTTCTAGGA+TGG + chr2_2:16092161-16092180 Msa0240710:CDS 35.0%
! GCAATTACCTGTTTTCATCA+GGG - chr2_2:16092190-16092209 None:intergenic 35.0%
! TGCAATTACCTGTTTTCATC+AGG - chr2_2:16092191-16092210 None:intergenic 35.0%
ATAGTATCCTCTTATGGTCA+CGG + chr2_2:16092226-16092245 Msa0240710:intron 35.0%
ATGTGTATTCGGTTAACTCT+GGG + chr2_2:16092295-16092314 Msa0240710:intron 35.0%
CTGTCTTCAATGTTCTTATG+TGG + chr2_2:16092428-16092447 Msa0240710:intron 35.0%
TCTTCAATGTTCTTATGTGG+TGG + chr2_2:16092431-16092450 Msa0240710:intron 35.0%
CTTCAATGTTCTTATGTGGT+GGG + chr2_2:16092432-16092451 Msa0240710:intron 35.0%
CAAGGTAAAACAAATCAGGT+AGG - chr2_2:16092528-16092547 None:intergenic 35.0%
GCTTAAAGATGATGTCAACA+AGG + chr2_2:16092597-16092616 Msa0240710:CDS 35.0%
CTGAGACATTCAACATATCG+TGG - chr2_2:16087659-16087678 None:intergenic 40.0%
!! GTTTGATTATGCTGCTTTGG+TGG + chr2_2:16088004-16088023 Msa0240710:five_prime_UTR 40.0%
! ACTTTTGAGCTGTGTACTCT+TGG + chr2_2:16088228-16088247 Msa0240710:five_prime_UTR 40.0%
ATCATGTGTTATGTGACGTG+AGG + chr2_2:16088274-16088293 Msa0240710:five_prime_UTR 40.0%
TTATTGCTCAAAGACGACGA+GGG - chr2_2:16088557-16088576 None:intergenic 40.0%
ATTATTGCTCAAAGACGACG+AGG - chr2_2:16088558-16088577 None:intergenic 40.0%
TCATCTTCGCACTTGTCAAA+TGG + chr2_2:16088581-16088600 Msa0240710:CDS 40.0%
AGGGCATATGTTGTGACTAA+TGG - chr2_2:16088609-16088628 None:intergenic 40.0%
AGTCACAACATATGCCCTAA+TGG + chr2_2:16088611-16088630 Msa0240710:CDS 40.0%
TATCATTGTGGAGGGAATTC+CGG + chr2_2:16088736-16088755 Msa0240710:CDS 40.0%
!! ATGCACCGATGAATTTTCAC+CGG - chr2_2:16088758-16088777 None:intergenic 40.0%
!! TTGAGCGATTTGTTGCCTTA+TGG + chr2_2:16088869-16088888 Msa0240710:CDS 40.0%
TTGTTGCCTTATGGCAAAGT+TGG + chr2_2:16088878-16088897 Msa0240710:CDS 40.0%
TGGAAAAGTGATACCAACTC+TGG - chr2_2:16089070-16089089 None:intergenic 40.0%
!!! AGAGTTGGTATCACTTTTCC+AGG + chr2_2:16089069-16089088 Msa0240710:CDS 40.0%
TACGGAACACGTATTGTATC+CGG + chr2_2:16089169-16089188 Msa0240710:intron 40.0%
ATGACAGTTGCGTCTTTAGT+TGG + chr2_2:16089200-16089219 Msa0240710:intron 40.0%
ATGATTCAGAACATGGGAAG+AGG + chr2_2:16089536-16089555 Msa0240710:intron 40.0%
TCTCAATTGAGATCTGGTCA+AGG - chr2_2:16089995-16090014 None:intergenic 40.0%
GCTCTTTCTCAATTGAGATC+TGG - chr2_2:16090001-16090020 None:intergenic 40.0%
! CGTTTTCATCATCCTGATGA+AGG - chr2_2:16090067-16090086 None:intergenic 40.0%
!!! AGTGATTCGTTTTAGGGACA+AGG - chr2_2:16090108-16090127 None:intergenic 40.0%
CACTAGAATTCACAAGGCAT+TGG + chr2_2:16090124-16090143 Msa0240710:CDS 40.0%
GGACTTCAGAAACAACCTTA+GGG - chr2_2:16090247-16090266 None:intergenic 40.0%
AGGACTTCAGAAACAACCTT+AGG - chr2_2:16090248-16090267 None:intergenic 40.0%
!! AAGGTTGTTTCTGAAGTCCT+TGG + chr2_2:16090248-16090267 Msa0240710:CDS 40.0%
!! TGTTTCTGAAGTCCTTGGAT+TGG + chr2_2:16090253-16090272 Msa0240710:CDS 40.0%
!! GTTTCTGAAGTCCTTGGATT+GGG + chr2_2:16090254-16090273 Msa0240710:CDS 40.0%
TCAATCTTCGGAATTCTCGA+GGG + chr2_2:16090288-16090307 Msa0240710:CDS 40.0%
AGTATCGCTTCTTACGAAAG+GGG + chr2_2:16090358-16090377 Msa0240710:CDS 40.0%
! GTGCTGTTAGTATTTGTAGG+AGG + chr2_2:16090414-16090433 Msa0240710:CDS 40.0%
AGAAATGCGAAGGAATCCTT+TGG + chr2_2:16090523-16090542 Msa0240710:CDS 40.0%
CAAGGTACAAAAGCTTCATG+TGG - chr2_2:16090592-16090611 None:intergenic 40.0%
! CTTTTGTACCTTGAGAACAG+AGG + chr2_2:16090599-16090618 Msa0240710:CDS 40.0%
TTCGTTTCCATGCCTTTGAA+TGG + chr2_2:16090700-16090719 Msa0240710:intron 40.0%
AAACTCCAAAATGGGAAGCA+AGG - chr2_2:16090810-16090829 None:intergenic 40.0%
!! TTTTAAGTGGTTCTTCCGAG+TGG - chr2_2:16090851-16090870 None:intergenic 40.0%
!! TAGTTCTGGAAATGTAAGGC+TGG + chr2_2:16091013-16091032 Msa0240710:intron 40.0%
GGAAATGTAAGGCTGGAATT+TGG + chr2_2:16091020-16091039 Msa0240710:intron 40.0%
GATTCACAAGTTACCGCATT+AGG + chr2_2:16091052-16091071 Msa0240710:intron 40.0%
TAATTCCCTTGCGAGTGATT+AGG + chr2_2:16091150-16091169 Msa0240710:intron 40.0%
CAAATCCTAATCACTCGCAA+GGG - chr2_2:16091158-16091177 None:intergenic 40.0%
!! TTTGCTGTTGCATTACGAAG+AGG + chr2_2:16091174-16091193 Msa0240710:intron 40.0%
! GAGGTCACACATTTGAGTTA+TGG + chr2_2:16091193-16091212 Msa0240710:intron 40.0%
! GGAAGGAGCTTTATAGTAAC+AGG + chr2_2:16091292-16091311 Msa0240710:intron 40.0%
!!! TTTTTAGGGTTCTTGCTCCT+TGG + chr2_2:16091321-16091340 Msa0240710:intron 40.0%
TTGGTCATTGGATTCACCTT+GGG + chr2_2:16091340-16091359 Msa0240710:intron 40.0%
CCTTAATCAGTGAAGACAGA+TGG - chr2_2:16091492-16091511 None:intergenic 40.0%
! CCATCTGTCTTCACTGATTA+AGG + chr2_2:16091489-16091508 Msa0240710:intron 40.0%
AGCACTCAGTGAAAAGGATT+AGG + chr2_2:16091522-16091541 Msa0240710:intron 40.0%
AGGAGCAACTGATCTTATAG+AGG + chr2_2:16091585-16091604 Msa0240710:intron 40.0%
AAACAAGGCAAAATCGATGC+TGG - chr2_2:16091652-16091671 None:intergenic 40.0%
!! TGCCAGACTATTTTTCCCTT+TGG + chr2_2:16092011-16092030 Msa0240710:CDS 40.0%
! TGGCTAATTTGGCTTCCAAA+GGG - chr2_2:16092029-16092048 None:intergenic 40.0%
! ATGGCTAATTTGGCTTCCAA+AGG - chr2_2:16092030-16092049 None:intergenic 40.0%
TTTGGAAGCCAAATTAGCCA+TGG + chr2_2:16092029-16092048 Msa0240710:CDS 40.0%
TGCAATGTCCATGGCTAATT+TGG - chr2_2:16092040-16092059 None:intergenic 40.0%
TCGGCATCAAAAGGTTCAAA+CGG + chr2_2:16092093-16092112 Msa0240710:CDS 40.0%
TTCAAACGGAAACTTAAGGG+AGG + chr2_2:16092107-16092126 Msa0240710:CDS 40.0%
GATGTGTATTCGGTTAACTC+TGG + chr2_2:16092294-16092313 Msa0240710:intron 40.0%
CGGTTAACTCTGGGTTTATA+CGG + chr2_2:16092304-16092323 Msa0240710:intron 40.0%
GGTTAACTCTGGGTTTATAC+GGG + chr2_2:16092305-16092324 Msa0240710:intron 40.0%
CTTGACTCTTTGCTCTTCTT+GGG - chr2_2:16092560-16092579 None:intergenic 40.0%
TCTTGACTCTTTGCTCTTCT+TGG - chr2_2:16092561-16092580 None:intergenic 40.0%
AAGAAGAGCAAAGAGTCAAG+AGG + chr2_2:16092560-16092579 Msa0240710:CDS 40.0%
GACAACGAAAATGAAGGGAT+AGG - chr2_2:16092848-16092867 None:intergenic 40.0%
CTGAAGGGAAAGAAATGGGA+AGG - chr2_2:16087752-16087771 None:intergenic 45.0%
AACCCAGAGAGAGAGAATCA+CGG - chr2_2:16087817-16087836 None:intergenic 45.0%
! TGGTGATGCCGATATCATTG+TGG + chr2_2:16088724-16088743 Msa0240710:CDS 45.0%
TGATGCCGATATCATTGTGG+AGG + chr2_2:16088727-16088746 Msa0240710:CDS 45.0%
GATGCCGATATCATTGTGGA+GGG + chr2_2:16088728-16088747 Msa0240710:CDS 45.0%
ATCGGTGCATTCTAGGTTCT+AGG + chr2_2:16088768-16088787 Msa0240710:CDS 45.0%
ACTTAAACCCTCTCCAATGG+AGG + chr2_2:16088946-16088965 Msa0240710:CDS 45.0%
ACACATGTAGACACCTCCAT+TGG - chr2_2:16088962-16088981 None:intergenic 45.0%
GTTTGTGCTCATGATGCTTG+CGG + chr2_2:16088989-16089008 Msa0240710:CDS 45.0%
ACGGAACACGTATTGTATCC+GGG + chr2_2:16089170-16089189 Msa0240710:intron 45.0%
TAAAGACGCAACTGTCATCC+GGG - chr2_2:16089198-16089217 None:intergenic 45.0%
CTAAAGACGCAACTGTCATC+CGG - chr2_2:16089199-16089218 None:intergenic 45.0%
! AGTATCCGATATGTGTCGGT+CGG + chr2_2:16089340-16089359 Msa0240710:intron 45.0%
GACAATGGAAAGCAACCATG+AGG - chr2_2:16089923-16089942 None:intergenic 45.0%
TGAAAACGATGCTCCTGTAG+TGG + chr2_2:16090079-16090098 Msa0240710:CDS 45.0%
AACAACCTTAGGGTCACAGT+GGG - chr2_2:16090237-16090256 None:intergenic 45.0%
AAACAACCTTAGGGTCACAG+TGG - chr2_2:16090238-16090257 None:intergenic 45.0%
! TGAAGTCCTTGGATTGGGTT+TGG + chr2_2:16090259-16090278 Msa0240710:CDS 45.0%
CATTAGCCAAACCCAATCCA+AGG - chr2_2:16090268-16090287 None:intergenic 45.0%
GTCAATCTTCGGAATTCTCG+AGG + chr2_2:16090287-16090306 Msa0240710:CDS 45.0%
AATTGAAGGCTCCTTACGCA+TGG - chr2_2:16090336-16090355 None:intergenic 45.0%
! GCATCGGATTTGACTTTCGA+TGG + chr2_2:16090386-16090405 Msa0240710:CDS 45.0%
GTATTTGTAGGAGGTTGACG+AGG + chr2_2:16090423-16090442 Msa0240710:CDS 45.0%
GTACCTTGAGAACAGAGGTA+TGG + chr2_2:16090604-16090623 Msa0240710:intron 45.0%
TCACCATACCTCTGTTCTCA+AGG - chr2_2:16090610-16090629 None:intergenic 45.0%
TTGTCGTGGATCAAGCTTTG+AGG + chr2_2:16090666-16090685 Msa0240710:intron 45.0%
! GTGATCCTTGCTTCCCATTT+TGG + chr2_2:16090802-16090821 Msa0240710:intron 45.0%
TCTTTAACTCCTTGTGCGAC+TGG + chr2_2:16090891-16090910 Msa0240710:intron 45.0%
GTAAGGCTGGAATTTGGAAG+TGG + chr2_2:16091026-16091045 Msa0240710:intron 45.0%
AGGAATTCAGGCGCAAACAA+AGG + chr2_2:16091105-16091124 Msa0240710:intron 45.0%
GGAATTCAGGCGCAAACAAA+GGG + chr2_2:16091106-16091125 Msa0240710:intron 45.0%
! AAGGGCCAATTTTCTGCTGA+AGG + chr2_2:16091124-16091143 Msa0240710:intron 45.0%
GCAAATCCTAATCACTCGCA+AGG - chr2_2:16091159-16091178 None:intergenic 45.0%
TTCCATGGTACATGACGAAG+AGG - chr2_2:16091276-16091295 None:intergenic 45.0%
TCTTCGTCATGTACCATGGA+AGG + chr2_2:16091275-16091294 Msa0240710:intron 45.0%
CAAGGTGAATCCAATGACCA+AGG - chr2_2:16091341-16091360 None:intergenic 45.0%
CTTGGTCATTGGATTCACCT+TGG + chr2_2:16091339-16091358 Msa0240710:intron 45.0%
CTTAGAGCATGAAAGGGAGA+AGG + chr2_2:16091427-16091446 Msa0240710:intron 45.0%
TGAGTGAGCACTCAGTGAAA+AGG + chr2_2:16091516-16091535 Msa0240710:intron 45.0%
AGCTGGAGCAAGAACAAGTA+TGG - chr2_2:16091557-16091576 None:intergenic 45.0%
!! CAGGCCTGTCTTATTTATGC+TGG + chr2_2:16091852-16091871 Msa0240710:intron 45.0%
!! ATCCGAGTTTGCTGGTCTTT+CGG + chr2_2:16092074-16092093 Msa0240710:CDS 45.0%
ATGGAAGCCCTGATGAAAAC+AGG + chr2_2:16092180-16092199 Msa0240710:CDS 45.0%
! GCGCTACTTTCCTAATTGCT+CGG + chr2_2:16092474-16092493 Msa0240710:CDS 45.0%
AAAGCTGAGTTTAGTCGCTC+TGG + chr2_2:16092634-16092653 Msa0240710:CDS 45.0%
AAGCTGAGTTTAGTCGCTCT+GGG + chr2_2:16092635-16092654 Msa0240710:CDS 45.0%
! AGACTCTCTAAGGGATGAAG+AGG - chr2_2:16092677-16092696 None:intergenic 45.0%
!!! TTATTTTTTTTAATTAAAAC+TGG - chr2_2:16091731-16091750 None:intergenic 5.0%
GACTGTACGCGCGTAATAGA+TGG - chr2_2:16087584-16087603 None:intergenic 50.0%
ACCCGTGATTCTCTCTCTCT+GGG + chr2_2:16087812-16087831 Msa0240710:five_prime_UTR 50.0%
ACCCAGAGAGAGAGAATCAC+GGG - chr2_2:16087816-16087835 None:intergenic 50.0%
!! TTATGCTGCTTTGGTGGCTC+TGG + chr2_2:16088010-16088029 Msa0240710:five_prime_UTR 50.0%
GAGCATGATCGGAGCCATTA+GGG - chr2_2:16088628-16088647 None:intergenic 50.0%
CTCGAGGTTACGAGCATGAT+CGG - chr2_2:16088639-16088658 None:intergenic 50.0%
GTAGACACCTCCATTGGAGA+GGG - chr2_2:16088956-16088975 None:intergenic 50.0%
TGTAGACACCTCCATTGGAG+AGG - chr2_2:16088957-16088976 None:intergenic 50.0%
ACGTATTGTATCCGGGATCC+CGG + chr2_2:16089177-16089196 Msa0240710:intron 50.0%
CTTTGTAGGGAAGGCTCTTG+TGG + chr2_2:16089881-16089900 Msa0240710:CDS 50.0%
! TCGTTGCCCAATGTGTTGAC+AGG + chr2_2:16089955-16089974 Msa0240710:CDS 50.0%
! CGTTGCCCAATGTGTTGACA+GGG + chr2_2:16089956-16089975 Msa0240710:CDS 50.0%
TGCCACCCTGTCAACACATT+GGG - chr2_2:16089964-16089983 None:intergenic 50.0%
CATCATCCTGATGAAGGTCG+CGG - chr2_2:16090061-16090080 None:intergenic 50.0%
! TACTGCATAGTGGAGAGCAC+CGG - chr2_2:16090213-16090232 None:intergenic 50.0%
TCACATTGCTGCCATGCGTA+AGG + chr2_2:16090322-16090341 Msa0240710:CDS 50.0%
TACGAAAGGGGCTTGTGCAT+CGG + chr2_2:16090370-16090389 Msa0240710:CDS 50.0%
ACAGAGGGATCTGTAGCCAA+AGG - chr2_2:16090542-16090561 None:intergenic 50.0%
ACTGTGTGGGAAGACACAGA+GGG - chr2_2:16090557-16090576 None:intergenic 50.0%
GAGATCATCAGCCACTGTGT+GGG - chr2_2:16090570-16090589 None:intergenic 50.0%
ATCCAATGGTCAGCTTTCCG+AGG - chr2_2:16090918-16090937 None:intergenic 50.0%
GGCTGGAATTTGGAAGTGGT+TGG + chr2_2:16091030-16091049 Msa0240710:intron 50.0%
GTACATGACGAAGAGGTCAC+AGG - chr2_2:16091269-16091288 None:intergenic 50.0%
GACCTCTTCGTCATGTACCA+TGG + chr2_2:16091271-16091290 Msa0240710:intron 50.0%
GGTTCTTGCTCCTTGGTCAT+TGG + chr2_2:16091328-16091347 Msa0240710:intron 50.0%
CTTGCTCCAGCTCTCAGATT+AGG + chr2_2:16091565-16091584 Msa0240710:intron 50.0%
GTTGCTCCTAATCTGAGAGC+TGG - chr2_2:16091574-16091593 None:intergenic 50.0%
GAGACAACATCCGAGTTTGC+TGG + chr2_2:16092066-16092085 Msa0240710:CDS 50.0%
TGCCGAAAGACCAGCAAACT+CGG - chr2_2:16092079-16092098 None:intergenic 50.0%
!! GCTGGTCTTTCGGCATCAAA+AGG + chr2_2:16092084-16092103 Msa0240710:CDS 50.0%
TCGAGCACTTCCGAGCAATT+AGG - chr2_2:16092487-16092506 None:intergenic 50.0%
!! GGAAGTGCTCGACAAGTTCA+TGG + chr2_2:16092495-16092514 Msa0240710:CDS 50.0%
AGTGCTCGACAAGTTCATGG+AGG + chr2_2:16092498-16092517 Msa0240710:CDS 50.0%
GACCCGTGATTCTCTCTCTC+TGG + chr2_2:16087811-16087830 Msa0240710:five_prime_UTR 55.0%
CGAGCATGATCGGAGCCATT+AGG - chr2_2:16088629-16088648 None:intergenic 55.0%
CGATCATGCTCGTAACCTCG+AGG + chr2_2:16088637-16088656 Msa0240710:CDS 55.0%
!! GAGCACCGACCGACACATAT+CGG - chr2_2:16089348-16089367 None:intergenic 55.0%
! TGCCCAATGTGTTGACAGGG+TGG + chr2_2:16089959-16089978 Msa0240710:CDS 55.0%
GTGCCACCCTGTCAACACAT+TGG - chr2_2:16089965-16089984 None:intergenic 55.0%
TGTTGACAGGGTGGCACGAT+CGG + chr2_2:16089968-16089987 Msa0240710:CDS 55.0%
! AGGGACAAGGTGTCCACTAC+AGG - chr2_2:16090095-16090114 None:intergenic 55.0%
!! CACAGTGGGCTACTGCATAG+TGG - chr2_2:16090223-16090242 None:intergenic 55.0%
AGTAGCCCACTGTGACCCTA+AGG + chr2_2:16090229-16090248 Msa0240710:CDS 55.0%
TAGGAGGTTGACGAGGCCAA+AGG + chr2_2:16090430-16090449 Msa0240710:CDS 55.0%
CACTGTGTGGGAAGACACAG+AGG - chr2_2:16090558-16090577 None:intergenic 55.0%
CTCTGTGTCTTCCCACACAG+TGG + chr2_2:16090556-16090575 Msa0240710:CDS 55.0%
GGAGATCATCAGCCACTGTG+TGG - chr2_2:16090571-16090590 None:intergenic 55.0%
GACCTCGGAAAGCTGACCAT+TGG + chr2_2:16090913-16090932 Msa0240710:intron 55.0%
GCGCTGAGACCACCTTCATA+TGG + chr2_2:16091773-16091792 Msa0240710:intron 55.0%
AGCATTGCTGTCTGCTGCAG+TGG + chr2_2:16091984-16092003 Msa0240710:intron 55.0%
CTCTGCACGTGCAATGTCCA+TGG - chr2_2:16092049-16092068 None:intergenic 55.0%
GAAGTCGCCGTGACCATAAG+AGG - chr2_2:16092236-16092255 None:intergenic 55.0%
ATGGTCACGGCGACTTCCAA+TGG + chr2_2:16092239-16092258 Msa0240710:intron 55.0%
GGCGACTTCCAATGGAATCG+CGG + chr2_2:16092247-16092266 Msa0240710:intron 55.0%
GCGACTTCCAATGGAATCGC+GGG + chr2_2:16092248-16092267 Msa0240710:intron 55.0%
CGACTTCCAATGGAATCGCG+GGG + chr2_2:16092249-16092268 Msa0240710:intron 55.0%
! TGGTGGGTGTCAGTCGAGAT+GGG + chr2_2:16092448-16092467 Msa0240710:intron 55.0%
CTTCTTGGGTGCCCTTCTCA+AGG - chr2_2:16092546-16092565 None:intergenic 55.0%
GCAACTGTCATCCGGGATCC+CGG - chr2_2:16089191-16089210 None:intergenic 60.0%
CATCCTGATGAAGGTCGCGG+CGG - chr2_2:16090058-16090077 None:intergenic 60.0%
CTCCTTGTGCGACTGGACCT+CGG + chr2_2:16090898-16090917 Msa0240710:intron 60.0%
TTCCGAGGTCCAGTCGCACA+AGG - chr2_2:16090903-16090922 None:intergenic 60.0%
!! GTGGTGGGTGTCAGTCGAGA+TGG + chr2_2:16092447-16092466 Msa0240710:intron 60.0%
GGTGGGTGTCAGTCGAGATG+GGG + chr2_2:16092449-16092468 Msa0240710:intron 60.0%
CTGCTGCCCCGCGATTCCAT+TGG - chr2_2:16092258-16092277 None:intergenic 65.0%
CAATGGAATCGCGGGGCAGC+AGG + chr2_2:16092256-16092275 Msa0240710:intron 65.0%
GGGTGTCAGTCGAGATGGGG+CGG + chr2_2:16092452-16092471 Msa0240710:intron 65.0%
GCTCCGCCGCGACCTTCATC+AGG + chr2_2:16090052-16090071 Msa0240710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 16087580 16092903 16087580 ID=Msa0240710;Name=Msa0240710
chr2_2 mRNA 16087580 16092903 16087580 ID=Msa0240710-mRNA-1;Parent=Msa0240710;Name=Msa0240710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=956|1|1|1|0.66|1|4|180|589
chr2_2 exon 16087580 16089090 16087580 ID=Msa0240710-mRNA-1:exon:6588;Parent=Msa0240710-mRNA-1
chr2_2 exon 16089867 16090620 16089867 ID=Msa0240710-mRNA-1:exon:6589;Parent=Msa0240710-mRNA-1
chr2_2 exon 16092004 16092201 16092004 ID=Msa0240710-mRNA-1:exon:6590;Parent=Msa0240710-mRNA-1
chr2_2 exon 16092461 16092903 16092461 ID=Msa0240710-mRNA-1:exon:6591;Parent=Msa0240710-mRNA-1
chr2_2 five_prime_UTR 16087580 16088535 16087580 ID=Msa0240710-mRNA-1:five_prime_utr;Parent=Msa0240710-mRNA-1
chr2_2 CDS 16088536 16089090 16088536 ID=Msa0240710-mRNA-1:cds;Parent=Msa0240710-mRNA-1
chr2_2 CDS 16089867 16090620 16089867 ID=Msa0240710-mRNA-1:cds;Parent=Msa0240710-mRNA-1
chr2_2 CDS 16092004 16092201 16092004 ID=Msa0240710-mRNA-1:cds;Parent=Msa0240710-mRNA-1
chr2_2 CDS 16092461 16092723 16092461 ID=Msa0240710-mRNA-1:cds;Parent=Msa0240710-mRNA-1
chr2_2 three_prime_UTR 16092724 16092903 16092724 ID=Msa0240710-mRNA-1:three_prime_utr;Parent=Msa0240710-mRNA-1
Gene Sequence

>Msa0240710

ATGGCTAATTCGGCTGAACCCTCGTCGTCTTTGAGCAATAATACATCATCTTCGCACTTGTCAAATGGATCCATTAGTCACAACATATGCCCTAATGGCTCCGATCATGCTCGTAACCTCGAGGTTATAAGTTTGAACAAGCTGAGTTCTAATTTGGAGCAGCTTTTGATTGATTCTGATTATGATTATGGTGATGCCGATATCATTGTGGAGGGAATTCCGGTGAAAATTCATCGGTGCATTCTAGGTTCTAGGAGTAAGTTTTTCCATGAAATATTTAAGAGGGGTAAAGATAAAGGATTGTCGAAGAATGAAGGGAAATTGAAGTATTGTTTGAGCGATTTGTTGCCTTATGGCAAAGTTGGTTATGAAGCTTTTCTTATATTCTTGAGCTATGCATATAGTGGTAAACTTAAACCCTCTCCAATGGAGGTGTCTACATGTGTTGATAATGTTTGTGCTCATGATGCTTGCGGACCTGCAATTAATTTTGCTGTGGAGTTAATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGAGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATTTCAATCCTCATGGTTGCTTTCCATTGTCAATTGAATCAACTCGTTGCCCAATGTGTTGACAGGGTGGCACGATCGGACCTTGACCAGATCTCAATTGAGAAAGAGCTTCCCCATGAACTCTCAGAAAAAGTTAAATTGCTCCGCCGCGACCTTCATCAGGATGATGAAAACGATGCTCCTGTAGTGGACACCTTGTCCCTAAAACGAATCACTAGAATTCACAAGGCATTGGACTCAGACGACGTCGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGATGAAGCCGGTGCTCTCCACTATGCAGTAGCCCACTGTGACCCTAAGGTTGTTTCTGAAGTCCTTGGATTGGGTTTGGCTAATGTCAATCTTCGGAATTCTCGAGGGTATACAGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCGCTTCTTACGAAAGGGGCTTGTGCATCGGATTTGACTTTCGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACGAGGCCAAAGGATTATCACACAAAAACAGAACAAGGGAAAGAAACAAATAAAGACCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTACAGATCCCTCTGTGTCTTCCCACACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACAGAGTGGCATTTGCCAGACTATTTTTCCCTTTGGAAGCCAAATTAGCCATGGACATTGCACGTGCAGAGACAACATCCGAGTTTGCTGGTCTTTCGGCATCAAAAGGTTCAAACGGAAACTTAAGGGAGGTTGATCTCAATGAAACTCCCATAATGCAAAACAAGAGACTTATTTCTAGGATGGAAGCCCTGATGAAAACAGTCGAGATGGGGCGGCGCTACTTTCCTAATTGCTCGGAAGTGCTCGACAAGTTCATGGAGGATGACCTACCTGATTTGTTTTACCTTGAGAAGGGCACCCAAGAAGAGCAAAGAGTCAAGAGGACGAGATTTGTTGAGCTTAAAGATGATGTCAACAAGGCTTTCAGCAAAGACAAAGCTGAGTTTAGTCGCTCTGGGATTTCATCTTCATCATCCTCTTCATCCCTTAGAGAGTCTGTATATTACAAGGCTAGAAAAATGTGA
Protein sequence

>Msa0240710

MANSAEPSSSLSNNTSSSHLSNGSISHNICPNGSDHARNLEVISLNKLSSNLEQLLIDSDYDYGDADIIVEGIPVKIHRCILGSRSKFFHEIFKRGKDKGLSKNEGKLKYCLSDLLPYGKVGYEAFLIFLSYAYSGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIEKELPHELSEKVKLLRRDLHQDDENDAPVVDTLSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAVAHCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLATDPSVSSHTVADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSASKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPNCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRTRFVELKDDVNKAFSKDKAEFSRSGISSSSSSSSLRESVYYKARKM*