AlfalfaGEDB | Msa0240930

M. sativa cultivar zhongmu-4 / Msa0240930

KEGG: K17604
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240930	XP_024631611.1	48.366	153	62	3	38	174	1	152	1.03e-27	132
Msa0240930	XP_024631611.1	89.140	709	55	1	183	891	1	687	0.0	1319

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240930	sp\|Q9S793\|FRS8_ARATH	53.740	655	286	7	247	889	74	723	0.0	702
Msa0240930	sp\|Q9S793\|FRS8_ARATH	49.485	97	46	2	76	172	88	181	3.95e-20	99.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240930	A0A2Z6P792	42.077	183	61	4	38	178	1	180	9.48e-26	125
Msa0240930	A0A2Z6P792	84.233	704	109	1	183	884	1	704	0.0	1248

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TFs/TRs:

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Gene ID	Type	Classification
Msa0240930	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240930	MtrunA17_Chr2g0291591	89.231	585	41	1	183	767	1	563	0.0	1082
Msa0240930	MtrunA17_Chr2g0291591	48.366	153	62	3	38	174	1	152	3.69e-32	132
Msa0240930	MtrunA17_Chr2g0291581	50.466	644	304	5	252	891	55	687	0.0	650
Msa0240930	MtrunA17_Chr2g0291581	63.043	138	21	2	62	178	35	163	4.02e-44	170
Msa0240930	MtrunA17_Chr1g0207551	34.198	617	394	6	267	880	33	640	5.54e-115	370
Msa0240930	MtrunA17_Chr2g0296781	35.326	552	351	4	283	831	12	560	2.88e-114	366
Msa0240930	MtrunA17_Chr3g0080351	32.330	631	377	7	267	879	75	673	8.77e-111	360
Msa0240930	MtrunA17_Chr2g0329031	32.595	632	396	8	268	891	14	623	2.04e-110	356
Msa0240930	MtrunA17_Chr5g0441581	34.150	612	374	8	267	867	31	624	3.23e-110	354
Msa0240930	MtrunA17_Chr5g0448761	33.127	646	395	12	267	889	59	690	2.04e-106	347

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240930	AT1G80010.1	53.740	655	286	7	247	889	74	723	0.0	702
Msa0240930	AT1G80010.1	49.485	97	46	2	76	172	88	181	4.01e-21	99.8
Msa0240930	AT1G52520.1	50.294	680	297	13	231	889	42	701	0.0	647
Msa0240930	AT1G52520.1	44.586	157	83	3	21	174	18	173	6.65e-28	121
Msa0240930	AT4G15090.1	33.226	620	399	6	267	880	50	660	4.51e-117	376
Msa0240930	AT4G15090.5	33.226	620	399	6	267	880	50	660	4.51e-117	376
Msa0240930	AT4G15090.3	33.226	620	399	6	267	880	50	660	4.51e-117	376
Msa0240930	AT4G15090.2	33.226	620	399	6	267	880	50	660	4.51e-117	376
Msa0240930	AT4G15090.4	33.226	620	399	6	267	880	50	660	4.51e-117	376
Msa0240930	AT1G76320.3	33.546	626	390	9	272	891	1	606	2.55e-109	351

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Find 212 sgRNAs with CRISPR-Local

Find 725 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTAAATCACATAGG+AGG	0.599156	2_2:-16379051	Msa0240930:CDS
AAAATCATTATTTGGTTTCT+TGG	0.223441	2_2:-16377566	Msa0240930:CDS
AAAGAGGGATCAACAAATAT+GGG	0.478243	2_2:-16377086	Msa0240930:three_prime_UTR
AAAGCTCCGAAGCTTGCACG+AGG	0.688357	2_2:-16378276	Msa0240930:CDS
AAATATGGGTCATGGCTTTA+GGG	0.385928	2_2:-16377072	Msa0240930:three_prime_UTR
AAATGATCAAAACACTGAAC+TGG	0.347410	2_2:+16377633	None:intergenic
AAATGCCTATCATTTCTTAC+CGG	0.393224	2_2:+16377867	None:intergenic
AAATGGAAGGGAGGAAACCA+CGG	0.638573	2_2:-16379434	Msa0240930:CDS
AACATCCATGATTACTACTA+TGG	0.390907	2_2:-16376957	Msa0240930:three_prime_UTR
AACTGAAGCTCTTGATGATT+TGG	0.234723	2_2:-16378084	Msa0240930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGAAGAGCGATATTTAA+CGG	-	chr2_2:16376936-16376955	Msa0240930:three_prime_UTR	30.0%
CTTCAAATTATGCTAGGTTT+AGG	-	chr2_2:16377110-16377129	Msa0240930:three_prime_UTR	30.0%
CCCTAAAATGAAAAGTTACT+AGG	+	chr2_2:16377623-16377642	None:intergenic	30.0%
AGTAACCGAAAATTTGGTAA+GGG	-	chr2_2:16377841-16377860	Msa0240930:CDS	30.0%
TCCACTGTAGTAATTAATCA+TGG	-	chr2_2:16377870-16377889	Msa0240930:CDS	30.0%
ACCATGATTAATTACTACAG+TGG	+	chr2_2:16377874-16377893	None:intergenic	30.0%
TTTATAGGGGCAAAAATCTT+TGG	-	chr2_2:16378093-16378112	Msa0240930:CDS	30.0%
TAGTCATAACGAAAGAATCT+GGG	+	chr2_2:16378659-16378678	None:intergenic	30.0%
ATAGTCATAACGAAAGAATC+TGG	+	chr2_2:16378660-16378679	None:intergenic	30.0%
TAGAGGAATACGTTATAACA+TGG	-	chr2_2:16378708-16378727	Msa0240930:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	16376820	16388737	16376820	ID=Msa0240930;Name=Msa0240930
chr2_2	mRNA	16376820	16388737	16376820	ID=Msa0240930-mRNA-1;Parent=Msa0240930;Name=Msa0240930-mRNA-1;_AED=0.18;_eAED=0.18;_QI=51\|0.66\|0.71\|1\|0.5\|0.57\|7\|521\|891
chr2_2	exon	16376820	16377304	16376820	ID=Msa0240930-mRNA-1:exon:6714;Parent=Msa0240930-mRNA-1
chr2_2	exon	16377473	16379566	16377473	ID=Msa0240930-mRNA-1:exon:6713;Parent=Msa0240930-mRNA-1
chr2_2	exon	16380953	16381048	16380953	ID=Msa0240930-mRNA-1:exon:6712;Parent=Msa0240930-mRNA-1
chr2_2	exon	16385517	16385714	16385517	ID=Msa0240930-mRNA-1:exon:6711;Parent=Msa0240930-mRNA-1
chr2_2	exon	16385778	16385918	16385778	ID=Msa0240930-mRNA-1:exon:6710;Parent=Msa0240930-mRNA-1
chr2_2	exon	16387099	16387194	16387099	ID=Msa0240930-mRNA-1:exon:6709;Parent=Msa0240930-mRNA-1
chr2_2	exon	16388600	16388737	16388600	ID=Msa0240930-mRNA-1:exon:6708;Parent=Msa0240930-mRNA-1
chr2_2	five_prime_UTR	16388687	16388737	16388687	ID=Msa0240930-mRNA-1:five_prime_utr;Parent=Msa0240930-mRNA-1
chr2_2	CDS	16388600	16388686	16388600	ID=Msa0240930-mRNA-1:cds;Parent=Msa0240930-mRNA-1
chr2_2	CDS	16387099	16387194	16387099	ID=Msa0240930-mRNA-1:cds;Parent=Msa0240930-mRNA-1
chr2_2	CDS	16385778	16385918	16385778	ID=Msa0240930-mRNA-1:cds;Parent=Msa0240930-mRNA-1
chr2_2	CDS	16385517	16385714	16385517	ID=Msa0240930-mRNA-1:cds;Parent=Msa0240930-mRNA-1
chr2_2	CDS	16380953	16381048	16380953	ID=Msa0240930-mRNA-1:cds;Parent=Msa0240930-mRNA-1
chr2_2	CDS	16377509	16379566	16377509	ID=Msa0240930-mRNA-1:cds;Parent=Msa0240930-mRNA-1
chr2_2	three_prime_UTR	16377473	16377508	16377473	ID=Msa0240930-mRNA-1:three_prime_utr;Parent=Msa0240930-mRNA-1
chr2_2	three_prime_UTR	16376820	16377304	16376820	ID=Msa0240930-mRNA-1:three_prime_utr;Parent=Msa0240930-mRNA-1

Gene Sequence

>Msa0240930

ATGTCGAATCTTGGGACTGAACAACAACTTGTCTCCGCCGTTGAGCCTCTCCCTTCAGAAGAAGAAGATGAAGAGCGATATTTAACGAGTTCATGTGAACCCTCTGATCGGATCATGACGGGTGATACTGTGTGTGCTCCAAATTATAAAGACTTGTCACTGAGCTCTAATCTCGATGTCATGATGGAAGATACTTCACCATGCAGCAAGCAATCGCCGGATGGAGAATGCATTGAAATTCCAAGAGATGAAGATGGTGCTCTAATTGAATTTGATTGTCAAGACGATATTTCTGAGGGTAAAAAGGAATTTGTTGCACCTGCCGTTGGATTTTGTGTGAGGATTAAGAATTCATGGTTCAAGCGAAATAGCAAAGAAAAATACGGTGCAGTGCTTTGTTGTAGCAATCAAGGTTTCAAAAGAATAAAAGATGTTAACAATTTGAGAAAAGAAACCAGAACTGGTTGTCCTGCCATGATAAGGATTAAGTTAGTGGAGTCTCAGAGATGGAGGATATGCGAGAACTCATGTGAACTCTCTGGCCGAATCATGACCGACAATGCAGTGTGTTCTCCAAATGATAAAGGCTTGTTGCTGAGCCCTAATCTCGACATCACGATAGATGAGGGGTCTCTACAAAGTAAGCAACTACTTGAGGTTGAGGACAAGGGCAACGAGCTTGAGAATGACTGTAGTCAATTGTTTGAGATCGATGGTGGCGAACATGAAAATGGAAGGGAGGAAACCACGGGAGTTGACAGTCATAGTGAAGAATCTCAAAGAACAAAAGACTACGCACAACCTGTTGAGGGAGTGGAGTTTGAAACTTATGATGATGCCTACAACTATTATAATAGCTATGCCAGGGAAATTGGATTTGCTATTCGGGTTAAATCTTCGTGGACCAAACGTAACAGTAAAGAGAAGCGTGGTGCTGTCTTGTGTTGTAGTTGTGAAGGTTTCAAAACAAATAAAGAAGCTAATAGTCGTAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGACTGAGAGTAGTGGAATCTAATAGGTGGAGGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCGCAAAACTCTAAATCACATAGGAGGATGGACAGTGGGGCCAAAAGAAAGGTTGAGCCGACTCTAGATGTTGAAGTACGGACAATCAAGTTATATCGAATGCCAACTGTAGATGCTTCCGGTTATGGGAGCTCAAATTCTAATGAAGGAGGAACTAGCAACAACGTTAAGTTTTCCAGGAGACTGAAGCTAAAAAAAGGTGATGCAGAACTTATTTCAAATTACTTCTGCCACCATAAACTGGTGAGTCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAATTGAGGAACATATTTTGGATTGATTCTAGTTCTAGGGCTGCATATAGTTATTTTGGTGACGTGGTTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTAGTTGCATTTGTTGGTGTTAATCACCATGGTCAATCTGTTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACGTATACTTGGTTATTTAGAGCATGGCTTTCTTGTATGTCTAGTCGCCCCCCAGAAACTATTGTTACAAACCGATGTAAGACCATAGAATGTGCAATAGTAGAGGTTTTTCCGAGGGCTCACCATAGAATTTGTCTATTGCAAGTCTTGCAGATCATCCGTGGTTGTCTGGTGCAGTTTCAGGAAGATGAGGCATTTCAGATGGCACTGACAAGAGTGATATATGACCCTAAAACATTAGATGAATTTGAAAGAGATTGGGATTCCCTGACCCAACATTATGCAATAAGAAATCATGCAAAGCTCCGAAGCTTGCACGAGGACAGAGAGCTTTGGGCTCCAGTTTACTCCAAGGACACATTTTTTGCTGGAATTTCTAATTACGAAAAGGGTGAATCTATGATTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAACAAAAAAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAAAATTCAAGTCCACAGCTGAAAACAAGATGCCACTATGAGTTGCAACTCTCTAAATTGTACACGAATGCAATATTCAATAAGTTCCAAGATGAGGTGGTGATGATGTCTTCCTGTTTCAGCGTCTCACAAATTCAAACAAACGGGTCTATAGTGACATACATGGTAAAAGAACATCAAGGGGAAGAACCGGTAAGAAATGATAGGCATTTTGAAGTCATGTATGATAAAGCATTAACCGAAGTACGTTGCATTTGTAATTGCTTTAACTTCAAAGGCTACCTATGCAGGCATGCCTTGTATATCCTTAATTACAATGGTGTGGGGGAAATTCCATGTCATTATATTTTGTCAAGATGGAGGAAAGATTTTAAGCGATTGTATGTACCACATCTCAGCTCTGACAATGTTGATATTACCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGGTATGCAAGTAGTTGAAGAAGGCACGATATCCCAAAATCATTATTTGGTTTCTTGGCAGACATTTATAGAGTCTTTGAATAAGGTTCGTTGTGTAACAGACAAGGTTGAATAA

Protein sequence

>Msa0240930

MSNLGTEQQLVSAVEPLPSEEEDEERYLTSSCEPSDRIMTGDTVCAPNYKDLSLSSNLDVMMEDTSPCSKQSPDGECIEIPRDEDGALIEFDCQDDISEGKKEFVAPAVGFCVRIKNSWFKRNSKEKYGAVLCCSNQGFKRIKDVNNLRKETRTGCPAMIRIKLVESQRWRICENSCELSGRIMTDNAVCSPNDKGLLLSPNLDITIDEGSLQSKQLLEVEDKGNELENDCSQLFEIDGGEHENGREETTGVDSHSEESQRTKDYAQPVEGVEFETYDDAYNYYNSYAREIGFAIRVKSSWTKRNSKEKRGAVLCCSCEGFKTNKEANSRRKETRTGCLAMIRLRVVESNRWRVDEVKLEHNHSFDPERAQNSKSHRRMDSGAKRKVEPTLDVEVRTIKLYRMPTVDASGYGSSNSNEGGTSNNVKFSRRLKLKKGDAELISNYFCHHKLVSPNFFYVMDLNDDGQLRNIFWIDSSSRAAYSYFGDVVAFDSTYLSNNYEIPLVAFVGVNHHGQSVLLGCGLLADETFETYTWLFRAWLSCMSSRPPETIVTNRCKTIECAIVEVFPRAHHRICLLQVLQIIRGCLVQFQEDEAFQMALTRVIYDPKTLDEFERDWDSLTQHYAIRNHAKLRSLHEDRELWAPVYSKDTFFAGISNYEKGESMIPFFKGHVHQQTSLKEFFEIYELVQQKKQKTEALDDLESQNSSPQLKTRCHYELQLSKLYTNAIFNKFQDEVVMMSSCFSVSQIQTNGSIVTYMVKEHQGEEPVRNDRHFEVMYDKALTEVRCICNCFNFKGYLCRHALYILNYNGVGEIPCHYILSRWRKDFKRLYVPHLSSDNVDITNPVQCFDHLYKRGMQVVEEGTISQNHYLVSWQTFIESLNKVRCVTDKVE*