AlfalfaGEDB | Msa0241070

M. sativa cultivar zhongmu-4 / Msa0241070

KEGG: K08064
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02045.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241070	XP_003594522.1	98.068	207	4	0	1	207	1	207	1.97e-148	421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241070	sp\|Q84JP1\|NFYA7_ARATH	54.634	205	72	7	1	203	1	186	2.32e-65	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241070	G7IKU2	98.068	207	4	0	1	207	1	207	9.41e-149	421

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TFs/TRs:

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Gene ID	Type	Classification
Msa0241070	TF	NF-YA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241070	MtrunA17_Chr2g0292411	98.068	207	4	0	1	207	1	207	1.81e-152	421
Msa0241070	MtrunA17_Chr8g0352251	70.652	92	27	0	86	177	127	218	4.29e-37	130
Msa0241070	MtrunA17_Chr3g0103391	51.429	140	52	4	48	184	116	242	4.59e-37	131
Msa0241070	MtrunA17_Chr8g0343451	52.381	126	49	3	49	173	110	225	1.75e-35	127
Msa0241070	MtrunA17_Chr2g0329811	49.231	130	62	3	47	173	118	246	7.32e-34	123
Msa0241070	MtrunA17_Chr2g0300261	45.517	145	68	4	62	204	32	167	2.29e-32	117
Msa0241070	MtrunA17_Chr7g0267581	41.143	175	75	6	38	204	106	260	1.82e-30	114
Msa0241070	MtrunA17_Chr1g0177091	43.537	147	59	6	44	186	111	237	1.19e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241070	AT1G30500.2	54.634	205	72	7	1	203	1	186	2.35e-66	202
Msa0241070	AT1G30500.1	53.659	205	70	7	1	203	1	182	3.95e-64	197
Msa0241070	AT2G34720.1	50.718	209	80	8	1	203	1	192	8.29e-59	184
Msa0241070	AT2G34720.2	59.589	146	49	4	62	203	18	157	2.06e-53	169
Msa0241070	AT2G34720.3	59.589	146	49	4	62	203	18	157	2.06e-53	169
Msa0241070	AT3G20910.1	45.625	160	73	3	48	204	112	260	1.31e-37	132
Msa0241070	AT5G12840.5	46.108	167	72	4	47	207	118	272	2.93e-37	130
Msa0241070	AT5G12840.3	46.108	167	72	4	47	207	118	272	2.93e-37	130
Msa0241070	AT5G12840.1	46.108	167	72	4	47	207	118	272	2.93e-37	130
Msa0241070	AT5G12840.4	45.509	167	73	4	47	207	117	271	2.99e-37	130

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Find 90 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGTTACACGGAAT+CGG	0.459956	2_2:-16511033	Msa0241070:CDS
AAAAGAGCAAGAGGATGTGG+AGG	0.656650	2_2:-16510335	Msa0241070:CDS
AAAATCTATGTCTATACATA+TGG	0.347388	2_2:+16510054	None:intergenic
AAAGAAAGATGAGAATAACC+AGG	0.677902	2_2:-16510297	Msa0241070:CDS
AAAGCTCTATCATGGCCTTC+TGG	0.329192	2_2:+16509771	None:intergenic
AAATCTATGTCTATACATAT+GGG	0.525850	2_2:+16510055	None:intergenic
AAATTGTTGTCCAGATAATG+AGG	0.571536	2_2:-16513953	Msa0241070:intron
AACCATTGGATGTCCACCGT+AGG	0.650023	2_2:+16511291	None:intergenic
AAGGCTAGCAAGGATCACAT+TGG	0.620081	2_2:+16509950	None:intergenic
AATACCTGTGGGATCATGTG+TGG	0.669627	2_2:+16515261	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTGAAAATGATAGAGGA+AGG	+	chr2_2:16509836-16509855	None:intergenic	30.0%
AAATTGAACAAAACCCAGAA+AGG	+	chr2_2:16509983-16510002	None:intergenic	30.0%
GGTTGAAAAGGAAATTGAAA+AGG	-	chr2_2:16510059-16510078	Msa0241070:three_prime_UTR	30.0%
CCCAAAATAGAAAATTGAGA+AGG	+	chr2_2:16510133-16510152	None:intergenic	30.0%
CTATGGATAAAATTCACACT+TGG	+	chr2_2:16510305-16510324	None:intergenic	30.0%
CAATCCAACAAAACAAGTAA+AGG	+	chr2_2:16510511-16510530	None:intergenic	30.0%
TGATAACAATCGTAAGAACT+TGG	-	chr2_2:16510905-16510924	Msa0241070:intron	30.0%
TATTTACAGGAAACTCTCTT+GGG	-	chr2_2:16511370-16511389	Msa0241070:CDS	30.0%
GTTTAAGAATCACTGAATGA+AGG	+	chr2_2:16511815-16511834	None:intergenic	30.0%
AAGTCAATCCAAACATTAAC+AGG	+	chr2_2:16512236-16512255	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	16509707	16516927	16509707	ID=Msa0241070;Name=Msa0241070
chr2_2	mRNA	16509707	16516927	16509707	ID=Msa0241070-mRNA-1;Parent=Msa0241070;Name=Msa0241070-mRNA-1;_AED=0.22;_eAED=0.22;_QI=192\|1\|1\|1\|0.8\|0.83\|6\|501\|207
chr2_2	exon	16509707	16510393	16509707	ID=Msa0241070-mRNA-1:exon:6820;Parent=Msa0241070-mRNA-1
chr2_2	exon	16511030	16511194	16511030	ID=Msa0241070-mRNA-1:exon:6819;Parent=Msa0241070-mRNA-1
chr2_2	exon	16511294	16511398	16511294	ID=Msa0241070-mRNA-1:exon:6818;Parent=Msa0241070-mRNA-1
chr2_2	exon	16513822	16513961	16513822	ID=Msa0241070-mRNA-1:exon:6817;Parent=Msa0241070-mRNA-1
chr2_2	exon	16515266	16515325	16515266	ID=Msa0241070-mRNA-1:exon:6816;Parent=Msa0241070-mRNA-1
chr2_2	exon	16516768	16516927	16516768	ID=Msa0241070-mRNA-1:exon:6815;Parent=Msa0241070-mRNA-1
chr2_2	five_prime_UTR	16516768	16516927	16516768	ID=Msa0241070-mRNA-1:five_prime_utr;Parent=Msa0241070-mRNA-1
chr2_2	five_prime_UTR	16515294	16515325	16515294	ID=Msa0241070-mRNA-1:five_prime_utr;Parent=Msa0241070-mRNA-1
chr2_2	CDS	16515266	16515293	16515266	ID=Msa0241070-mRNA-1:cds;Parent=Msa0241070-mRNA-1
chr2_2	CDS	16513822	16513961	16513822	ID=Msa0241070-mRNA-1:cds;Parent=Msa0241070-mRNA-1
chr2_2	CDS	16511294	16511398	16511294	ID=Msa0241070-mRNA-1:cds;Parent=Msa0241070-mRNA-1
chr2_2	CDS	16511030	16511194	16511030	ID=Msa0241070-mRNA-1:cds;Parent=Msa0241070-mRNA-1
chr2_2	CDS	16510208	16510393	16510208	ID=Msa0241070-mRNA-1:cds;Parent=Msa0241070-mRNA-1
chr2_2	three_prime_UTR	16509707	16510207	16509707	ID=Msa0241070-mRNA-1:three_prime_utr;Parent=Msa0241070-mRNA-1

Gene Sequence

>Msa0241070

ATGACTTCTTCCACACATGATCCCACAGATAATGAGGCTGATGGACAGCAGCAGTCAGAATCACAGATGCAGCCAATATCTGCAAACGGAATTTCTCACACCAGTATTGATACTGCTCAGATTGTTCAGTATGCAGCACCTCCACAGCTTGGTACGGGGCATGCTATGGCACCACCACCTGCTTATCCATATCCGGATCCCTACTACAGAAGCATCTTTGCTCCCTATGATGCACAACCTTATCCGCCGCAACCCTACGGTGGACATCCAATGGCCAATCTTCAGTTAATGGGAATTCAGCATGCAGGAGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATTTTAAGACGCAGGCAGTCTCGTGCTAAAGCTGAATCAGAAAAGAAAGTTACACGGAATCGGAAGCCATACTTGCACGAATCGCGGCATTTACATGCACTGAAAAGAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAGATGAGAATAACCAGGATGAGGTTGGATCAGCTGACAATTCACATTCCAATATCAATCTCAATTCTGATAGAAATGATCTTGCACAATCTGATAAAAAACCTTGA

Protein sequence

>Msa0241070

MTSSTHDPTDNEADGQQQSESQMQPISANGISHTSIDTAQIVQYAAPPQLGTGHAMAPPPAYPYPDPYYRSIFAPYDAQPYPPQPYGGHPMANLQLMGIQHAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVTRNRKPYLHESRHLHALKRARGCGGRFLNSKKDENNQDEVGSADNSHSNINLNSDRNDLAQSDKKP*