AlfalfaGEDB | Msa0241150

M. sativa cultivar zhongmu-4 / Msa0241150

KEGG: -
GO: GO:0000902 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:1901700
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241150	XP_003594535.2	98.361	854	14	0	1	854	2	855	0.0	1736

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241150	sp\|Q9SA72\|Y1357_ARATH	65.324	819	272	7	3	818	7	816	0.0	1118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241150	G7IKV5	98.361	854	14	0	1	854	2	855	0.0	1736

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0241150	MtrunA17_Chr2g0292501	98.361	854	14	0	1	854	2	855	1735
Msa0241150	MtrunA17_Chr2g0318301	46.389	817	398	15	10	816	14	800	672
Msa0241150	MtrunA17_Chr8g0352381	45.350	785	383	17	26	800	62	810	655
Msa0241150	MtrunA17_Chr4g0030441	46.076	790	381	17	30	808	35	790	646
Msa0241150	MtrunA17_Chr7g0245131	44.189	826	403	19	9	799	13	815	625
Msa0241150	MtrunA17_Chr7g0274261	42.807	862	424	24	11	837	21	848	609
Msa0241150	MtrunA17_Chr2g0327671	44.444	792	394	19	30	808	35	793	607
Msa0241150	MtrunA17_Chr1g0190581	42.215	867	417	24	10	835	7	830	600
Msa0241150	MtrunA17_Chr1g0202711	42.092	784	392	17	30	799	48	783	585
Msa0241150	MtrunA17_Chr6g0468691	43.308	792	382	20	30	799	30	776	585

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0241150	AT1G30570.1	65.324	819	272	7	3	818	7	816	1118
Msa0241150	AT5G54380.1	45.409	795	396	14	30	810	33	803	649
Msa0241150	AT3G46290.1	45.096	785	384	13	30	808	32	775	644
Msa0241150	AT5G59700.1	44.586	785	387	11	30	810	32	772	640
Msa0241150	AT4G39110.1	44.612	798	388	16	29	811	58	816	639
Msa0241150	AT3G51550.1	44.472	814	400	18	17	799	24	816	633
Msa0241150	AT2G21480.1	44.867	789	377	18	29	800	57	804	630
Msa0241150	AT5G28680.1	43.346	819	407	23	9	799	11	800	602
Msa0241150	AT5G28680.2	43.346	819	407	23	9	799	11	800	602
Msa0241150	AT5G24010.1	42.583	782	391	15	30	799	33	768	596

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Find 196 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTTTGGATTGGAGT+AGG	0.483006	2_2:+16595332	Msa0241150:CDS
AAACAGCACTGTAGGTGCCA+AGG	0.577753	2_2:+16595499	Msa0241150:CDS
AAATCAATTCTTATAAATTG+TGG	0.477228	2_2:+16594138	Msa0241150:CDS
AAATCAGATGTTTACTCTTT+CGG	0.294766	2_2:+16596160	Msa0241150:CDS
AAATGGGAATCTCGCCTATG+TGG	0.579612	2_2:+16595265	Msa0241150:CDS
AACAACGGGAACAATCTCAA+TGG	0.593472	2_2:-16594628	None:intergenic
AACACCAGGAGAAGAACTAA+GGG	0.616395	2_2:-16594229	None:intergenic
AACAGCACTGTAGGTGCCAA+GGG	0.601059	2_2:+16595500	Msa0241150:CDS
AACTTGAATTTGACTGGACA+CGG	0.502855	2_2:+16594693	Msa0241150:CDS
AAGAAGAATCATGATGGGGA+AGG	0.633772	2_2:+16594047	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCTTCTGTGAATGTTGA+TGG	+	chr2_2:16594165-16594184	Msa0241150:CDS	30.0%
TACACTATCAAAGATGTTCA+TGG	+	chr2_2:16594336-16594355	Msa0241150:CDS	30.0%
TTCATGGAAACTATGTTGTT+AGG	+	chr2_2:16594352-16594371	Msa0241150:CDS	30.0%
CAATGGTATGAAACTATTGT+CGG	+	chr2_2:16594440-16594459	Msa0241150:CDS	30.0%
TATATTCTGGATGTCAATGA+TGG	+	chr2_2:16594552-16594571	Msa0241150:CDS	30.0%
ATGTATAGGTTAAATGTTGG+TGG	+	chr2_2:16594726-16594745	Msa0241150:CDS	30.0%
ATCAAATCAATCTTGCAGAA+TGG	+	chr2_2:16596242-16596261	Msa0241150:CDS	30.0%
TCAAATCAATCTTGCAGAAT+GGG	+	chr2_2:16596243-16596262	Msa0241150:CDS	30.0%
GATTGTGAGCAAAAATGTAG+AGG	+	chr2_2:16594107-16594126	Msa0241150:CDS	35.0%
ATTTCCACTTAATCCATCAG+TGG	-	chr2_2:16594262-16594281	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	16594060	16596624	16594060	ID=Msa0241150;Name=Msa0241150
chr2_2	mRNA	16594060	16596624	16594060	ID=Msa0241150-mRNA-1;Parent=Msa0241150;Name=Msa0241150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|854
chr2_2	exon	16594060	16596624	16594060	ID=Msa0241150-mRNA-1:exon:6834;Parent=Msa0241150-mRNA-1
chr2_2	CDS	16594060	16596624	16594060	ID=Msa0241150-mRNA-1:cds;Parent=Msa0241150-mRNA-1

Gene Sequence

>Msa0241150

ATGGGGAAGGTTATTGAGGAAGGACTATTGATTGTGTTGATTTTGATGATTGTGAGCAAAAATGTAGAGGCTCAACAAAAATCAATTCTTATAAATTGTGGTTCAAATTCTTCTGTGAATGTTGATGGTAGGAAATGGATTGGGGATATGGCACCTAATAACAATGTTACCCTTAGTTCTTCTCCTGGTGTTGTTGCTTCCACTGATGGATTAAGTGGAAATTCAATCTATGAGCCACTTTATAAAACAGCTAGAATTTTCACAGCTTCTTTGAATTACACTATCAAAGATGTTCATGGAAACTATGTTGTTAGGTTTCATTTATGTCCCTTTGAGATTGTGGACCACAATGAGAATGAGTCGTCTTTTGGTGTTGTTGTCAATGGTATGAAACTATTGTCGGAGTTTAATGTTCCGGGTAAGATATCTGAAAAGAATGTGAACCTGCAGAATTCTGGAAAGAATTCGAGTTCGTTCTTTTTGATCAAAGAGTATATTCTGGATGTCAATGATGGTATGCTTTTGATTGAGTTTCTTCCCAGTGGAAATTCGTTTGGCTTCATCAATGCCATTGAGATTGTTCCCGTTGTTGGCGAGCTTTTTGATGGTTCGGTTGGTAAAGTTGGCGGTGGAAACTTGAATTTGACTGGACACGGGATGGAGACTATGTATAGGTTAAATGTTGGTGGCCCTGAGATTCAATCCAATCAAGATCCGGACCTTTGGAGAATTTGGGAAGTCGATTCTAGCTATATGGTCACGGAAAACGCCGGTGCAGCAATTAAGAACAGCTCTAATATTACATATGCTTCTGCGAATGATACTTCAGTGGCTCCTCTCCTTGTGTATGAAACTGCAAGGGCAATGTCAAACACAGAAGTCTTGGACAAAAGATTTAACATGTCATGGAAGTTTGAAGTAGATCCTGATTTTGATTATGTTGTCCGTTTACATTTCTGCGAGCTGATGTATGATAAGTCGAACGAGAGAATATTCAGGATCTACATAAACAACAGAACAGCTGCGGATAATGTTGATGTTTTTGTTCGAGCAGGAGGGAAGAATAAAGCGTATCATCAGGATCATTACGATTCCGCATCATTGAGGATGGACACACTTTGGGTTCAACTAGGTCCTGATACGGCTGCTGGTGCTGCGGGAACCGATGCTCTCTTGAATGGTCTAGAGATTTTTAAGCTTAGCAGAAATGGGAATCTCGCCTATGTGGAGAAATTTGACTTGGCTGGGAAATCGGGAAGCAGTTCAAAAGCAAAAATTCTTTGGATTGGAGTAGGAGCAGGTATAGCTTCTGTAGCTATAGTTGCATGTGTTGGTGTCTTTGTTTTCTGTTTCTGCAAAAGAAGGAGAAAAGAATCAAGTGATACCAAAAACAACTCTCCTGGTTGGCGACCGATATTCCTTTATGGAGGGGCTGCTGTAAACAGCACTGTAGGTGCCAAGGGATCAACAGGAAATCAAAAGTTATATGGTACTGTCACCTCAACAGGTGCTGGTAAGCGGTTTACATTGGCTGAAATCAACGCTGCAACAAATAATTTTGACGACAGTTTGGTCATCGGAGTTGGAGGCTTTGGTAAGGTGTATAAGGGAGAGGTTGATGATGGTGTCCCCGCTGCAATTAAGCGCGCCAATCCACAGTCTGAACAAGGTCTGGCTGAATTTGAGACAGAAATTGAGATGCTCTCAAAACTAAGACACAGACATCTTGTGTCTTTGATTGGTTTCTGTGAAGAGAAAAGTGAAATGATTTTGGTTTATGAGTACATGGCAAATGGAACTCTAAGAAGTCATCTATTTGGGAGCGATCTCCCTCCACTAACTTGGAAGCAGCGTCTTGAAGCCTGCATAGGTGCTGCAAGGGGACTTCACTACCTTCACACAGGAGCCGACCGTGGAATAATTCACCGGGATGTCAAGACAACCAATATATTGTTAGACGAGAATTTTGTAGCAAAAATGGCTGATTTCGGTTTGTCCAAAGACGGTCCTGCTTTTGAACATACTCATGTTAGCACTGCTGTGAAAGGAAGTTTTGGCTATCTCGATCCGGAGTACTTCAGAAGACAACAATTAACCGAAAAATCAGATGTTTACTCTTTCGGAGTTGTTCTTTTTGAAGCTGTTTGTGCTAGAGCTGTGATAAACCCTACCTTGCCTAAAGATCAAATCAATCTTGCAGAATGGGCAATGAGATGGCAAAAAGAAAGATCACTTGAAAAAATCGTTGATCCACGTCTTAACGGAAACTATTGTCCGGAATCGTTGTCTAAGTTTGGGGAAATAGCTGAAAAATGTCTCGCCGATGATGGTAAGAGCCGCCCGACCATGGGAGAGGTGTTATGGCACTTGGAGTATGTCTTGCAGCTGCACGAAGCTTGGCTCAATAGGGACAACAATAGCACAGAAAATTCCTTCTCTGGTAGTCAAGCTTTGAGTGGTCTAAATGATGGAAGAGTCGAGGTTGTTCAGGAGCATTCAAATCAAGATGAAGAAGTTGATTTGGATTCTAAAAATACAACTGATTTAGTCCACAGCAGTGTGTAA

Protein sequence

>Msa0241150

MGKVIEEGLLIVLILMIVSKNVEAQQKSILINCGSNSSVNVDGRKWIGDMAPNNNVTLSSSPGVVASTDGLSGNSIYEPLYKTARIFTASLNYTIKDVHGNYVVRFHLCPFEIVDHNENESSFGVVVNGMKLLSEFNVPGKISEKNVNLQNSGKNSSSFFLIKEYILDVNDGMLLIEFLPSGNSFGFINAIEIVPVVGELFDGSVGKVGGGNLNLTGHGMETMYRLNVGGPEIQSNQDPDLWRIWEVDSSYMVTENAGAAIKNSSNITYASANDTSVAPLLVYETARAMSNTEVLDKRFNMSWKFEVDPDFDYVVRLHFCELMYDKSNERIFRIYINNRTAADNVDVFVRAGGKNKAYHQDHYDSASLRMDTLWVQLGPDTAAGAAGTDALLNGLEIFKLSRNGNLAYVEKFDLAGKSGSSSKAKILWIGVGAGIASVAIVACVGVFVFCFCKRRRKESSDTKNNSPGWRPIFLYGGAAVNSTVGAKGSTGNQKLYGTVTSTGAGKRFTLAEINAATNNFDDSLVIGVGGFGKVYKGEVDDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKSEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWAMRWQKERSLEKIVDPRLNGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNRDNNSTENSFSGSQALSGLNDGRVEVVQEHSNQDEEVDLDSKNTTDLVHSSV*