AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241330 MtrunA17_Chr2g0292731 88.988 563 51 1 148 710 1 552 0.0 1041
Msa0241330 MtrunA17_Chr2g0292741 86.486 555 59 2 156 710 1 539 0.0 993
Msa0241330 MtrunA17_Chr6g0481041 40.676 740 388 16 1 706 1 723 9.70e-174 514
Msa0241330 MtrunA17_Chr2g0322731 37.255 714 413 15 4 706 76 765 1.93e-144 440
Msa0241330 MtrunA17_Chr4g0024351 36.389 720 401 18 7 706 47 729 3.16e-144 439
Msa0241330 MtrunA17_Chr7g0246631 35.912 724 412 17 9 706 77 774 1.46e-136 420
Msa0241330 MtrunA17_Chr8g0350321 36.039 727 415 20 9 706 101 806 1.97e-136 421
Msa0241330 MtrunA17_Chr1g0203671 34.642 713 416 18 25 706 96 789 1.93e-127 397
Msa0241330 MtrunA17_Chr5g0410711 33.737 744 435 22 1 709 61 781 2.12e-125 392
Msa0241330 MtrunA17_Chr2g0331581 32.847 685 416 13 28 706 143 789 3.37e-117 370
Msa0241330 MtrunA17_Chr6g0472471 32.895 760 421 24 2 706 40 765 4.21e-117 369
Msa0241330 MtrunA17_Chr2g0292761 37.013 616 302 17 103 707 1 541 2.41e-115 358
Msa0241330 MtrunA17_Chr5g0394111 32.659 692 365 17 32 707 41 647 1.43e-103 330
Msa0241330 MtrunA17_Chr7g0224451 36.917 493 237 12 25 509 17 443 1.09e-91 293
Msa0241330 MtrunA17_Chr2g0304191 88.971 136 15 0 230 365 1 136 5.95e-81 253
Msa0241330 MtrunA17_Chr7g0224481 36.939 379 175 9 25 395 17 339 6.10e-65 218
Msa0241330 MtrunA17_Chr7g0224491 38.125 320 160 7 398 706 1 293 1.95e-57 197
Msa0241330 MtrunA17_Chr8g0349941 95.556 45 2 0 465 509 67 111 2.88e-23 95.1
Msa0241330 MtrunA17_Chr2g0319671 32.018 228 131 7 226 449 63 270 5.22e-23 100
Msa0241330 MtrunA17_Chr6g0460611 45.055 91 50 0 85 175 2 92 1.70e-22 92.4
Msa0241330 MtrunA17_Chr5g0419821 47.000 100 52 1 23 121 32 131 5.73e-19 85.1
Msa0241330 MtrunA17_Chr2g0319681 27.074 229 159 4 482 706 1 225 1.90e-17 82.4
Msa0241330 MtrunA17_Chr7g0224431 32.468 154 62 3 249 401 4 116 1.10e-12 65.5
Msa0241330 MtrunA17_Chr2g0319691 31.579 114 75 2 336 449 1 111 4.08e-12 64.7
Msa0241330 MtrunA17_Chr2g0319701 27.027 185 115 6 533 706 48 223 4.90e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241330 AT1G73360.1 39.069 709 383 14 22 706 30 713 6.29e-161 482
Msa0241330 AT1G17920.2 38.372 688 384 15 28 706 25 681 5.19e-149 450
Msa0241330 AT1G17920.1 38.372 688 384 15 28 706 25 681 5.19e-149 450
Msa0241330 AT1G05230.3 36.506 704 402 13 8 706 51 714 1.46e-146 444
Msa0241330 AT3G03260.1 38.483 725 386 17 7 706 5 694 1.67e-146 444
Msa0241330 AT1G05230.8 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.4 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.9 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.10 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.7 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.11 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.2 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.6 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.5 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT1G05230.1 36.402 706 402 14 8 706 51 716 2.20e-144 439
Msa0241330 AT4G04890.2 36.951 728 410 17 2 706 34 735 3.03e-143 437
Msa0241330 AT4G04890.1 36.951 728 410 17 2 706 34 735 3.03e-143 437
Msa0241330 AT4G21750.2 36.302 741 419 17 2 706 34 757 4.38e-140 429
Msa0241330 AT4G21750.1 36.302 741 419 17 2 706 34 757 4.38e-140 429
Msa0241330 AT4G21750.3 36.302 741 419 17 2 706 34 757 4.38e-140 429
Msa0241330 AT4G21750.4 36.302 741 419 17 2 706 34 757 4.38e-140 429
Msa0241330 AT5G17320.1 35.180 722 411 18 17 706 19 715 9.64e-127 393
Msa0241330 AT4G00730.1 34.708 703 413 18 20 706 126 798 9.76e-126 393
Msa0241330 AT3G61150.1 33.516 731 427 21 11 706 97 803 4.60e-123 386
Msa0241330 AT1G05230.12 36.021 583 337 10 8 586 51 601 1.93e-120 373
Msa0241330 AT1G34650.1 35.443 711 394 20 32 706 24 705 2.93e-118 371
Msa0241330 AT3G03260.2 39.893 559 302 12 7 556 5 538 2.00e-117 363
Msa0241330 AT5G52170.3 34.648 710 377 20 11 706 42 678 2.64e-116 365
Msa0241330 AT5G52170.1 34.648 710 377 20 11 706 42 678 2.64e-116 365
Msa0241330 AT5G52170.2 34.685 715 375 21 11 706 42 683 1.18e-115 363
Msa0241330 AT5G46880.3 31.607 753 430 21 8 710 93 810 6.85e-110 352
Msa0241330 AT5G46880.1 31.607 753 430 21 8 710 93 810 6.85e-110 352
Msa0241330 AT5G46880.2 31.607 753 430 21 8 710 93 810 6.85e-110 352
Msa0241330 AT2G32370.1 32.192 730 414 22 8 704 37 718 8.37e-106 338
Msa0241330 AT1G79840.3 32.853 694 401 19 25 706 44 684 3.40e-105 336
Msa0241330 AT1G79840.6 32.853 694 401 19 25 706 44 684 3.40e-105 336
Msa0241330 AT1G79840.1 32.853 694 401 19 25 706 102 742 1.15e-104 336
Msa0241330 AT1G79840.2 32.853 694 401 19 25 706 131 771 5.96e-104 335
Msa0241330 AT4G17710.1 30.355 705 390 18 23 710 87 707 1.19e-96 314
Msa0241330 AT4G25530.1 29.478 709 447 16 8 706 17 682 2.97e-88 291
Msa0241330 AT1G79840.4 32.746 568 325 14 25 584 102 620 1.01e-87 288
Msa0241330 AT4G00730.2 35.535 439 250 10 20 447 126 542 2.69e-80 267
Msa0241330 AT1G79840.5 32.366 448 248 12 25 464 102 502 2.94e-60 211
Msa0241330 AT5G07260.2 20.253 632 394 15 83 706 3 532 1.05e-24 109
Msa0241330 AT5G07260.1 20.283 636 394 15 83 706 3 537 1.34e-24 108

Find 163 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCAATCCTGAATATT+TGG 0.136860 2_2:-16809650 None:intergenic
CCAAAGAACAATCACTTTAA+AGG 0.153190 2_2:+16809604 Msa0241330:CDS
AAATTATGGATGTGGCTTTA+AGG 0.186919 2_2:+16811833 Msa0241330:CDS
ATGGACTAGTGCTCAGAATT+TGG 0.187958 2_2:-16811987 None:intergenic
ATCGCTTTGTAGGATCTTTA+AGG 0.190512 2_2:-16811161 None:intergenic
TAGTGGGATGGTCTTTCTTA+TGG 0.230215 2_2:+16811505 Msa0241330:intron
GTGTACCCATCTTGAGTATT+TGG 0.232783 2_2:-16809550 None:intergenic
AAACCAAAACTTGATTTGTT+TGG 0.252374 2_2:-16808338 None:intergenic
TTTGGAGATTTGACCCAAAA+AGG 0.264891 2_2:-16809532 None:intergenic
CCTTTAAAGTGATTGTTCTT+TGG 0.271566 2_2:-16809604 None:intergenic
AACCAAAACTTGATTTGTTT+GGG 0.288547 2_2:-16808337 None:intergenic
GAAGAATCTTCCAAATATTC+AGG 0.291428 2_2:+16809640 Msa0241330:CDS
GTTACCTGTGATCGCTTTGT+AGG 0.304101 2_2:-16811171 None:intergenic
AGCCCAAACAAATCAAGTTT+TGG 0.306856 2_2:+16808335 Msa0241330:CDS
TATTCCTCCCTTCAAGTGTT+TGG 0.321521 2_2:-16810918 None:intergenic
GTTGGCGACTATAATTTATA+CGG 0.324947 2_2:+16810678 Msa0241330:CDS
TGACGTCGTTCTGCCTCGTC+TGG 0.329592 2_2:-16808289 None:intergenic
AAAGCTCCATCTCGACTTCC+TGG 0.342734 2_2:-16810012 None:intergenic
AATTATGGATGTGGCTTTAA+GGG 0.342930 2_2:+16811834 Msa0241330:CDS
CGGAGCTGAAAGCTGGATTA+AGG 0.349348 2_2:+16810698 Msa0241330:CDS
CCTCCTATGGTTTCTTCAAC+AGG 0.351635 2_2:-16810771 None:intergenic
TGAAATGCAGTTGCCATGAT+AGG 0.356217 2_2:-16811566 None:intergenic
CAATGCTATCAAGAGTTAAA+TGG 0.356804 2_2:-16811017 None:intergenic
TCAGCTTTGGTAACAATTGT+AGG 0.366355 2_2:-16809961 None:intergenic
TTACTGCTGCTACCACCATT+TGG 0.373536 2_2:+16811106 Msa0241330:CDS
CCAAATCTTAATGCACCATT+TGG 0.373891 2_2:+16811919 Msa0241330:CDS
TCGAGATGGAGCTTTATTAC+TGG 0.373995 2_2:+16810020 Msa0241330:CDS
TGGACTAGTGCTCAGAATTT+GGG 0.378235 2_2:-16811986 None:intergenic
CACTTTGATAGTTTCAGCTT+TGG 0.378308 2_2:-16809974 None:intergenic
CTCTATACATGTAATGTGTA+TGG 0.392878 2_2:-16810650 None:intergenic
ATTAGTAACTTTCGAGATGA+TGG 0.395166 2_2:+16807269 Msa0241330:CDS
ACTATCAAAGTGTTTGAAAT+CGG 0.396566 2_2:+16809985 Msa0241330:CDS
CCAAATGGTGCATTAAGATT+TGG 0.397130 2_2:-16811919 None:intergenic
AGAATGTGTGAGAGATCTTT+AGG 0.399513 2_2:+16810729 Msa0241330:CDS
GTCAATTGGCTGTGAAAGTT+GGG 0.402996 2_2:+16808308 Msa0241330:CDS
GAGTGCTCAAATCATGTTCA+TGG 0.409107 2_2:+16809379 Msa0241330:CDS
ACAAAACCATTTGGAAGGAT+TGG 0.409375 2_2:-16811877 None:intergenic
TTAGAATAGTAGCTGCCAAT+TGG 0.411318 2_2:-16812059 None:intergenic
CACTCATAAACCGTTCGGTT+TGG 0.412582 2_2:-16809361 None:intergenic
GAACAAATTACAAAACCATT+TGG 0.415955 2_2:-16811886 None:intergenic
AGCACTTGGTCAACTGCATA+TGG 0.416823 2_2:-16812006 None:intergenic
CCACAATTTGCGAAGCTTGT+GGG 0.416831 2_2:+16809032 Msa0241330:CDS
CGTCAATTGGCTGTGAAAGT+TGG 0.419536 2_2:+16808307 Msa0241330:CDS
GAAATTGCACACATTTCAAA+TGG 0.421250 2_2:+16811541 Msa0241330:CDS
AGCGGAGGTAAGACGTTTGT+AGG 0.421913 2_2:-16807303 None:intergenic
CGAGGCAGAACGACGTCAAT+TGG 0.430389 2_2:+16808294 Msa0241330:CDS
CGAGAAAGAGGTGCAGTGTT+TGG 0.431308 2_2:-16810266 None:intergenic
AAATCTCCAAATACTCAAGA+TGG 0.432047 2_2:+16809544 Msa0241330:CDS
GAAGATTAGTGGCATAGATT+TGG 0.434141 2_2:+16809669 Msa0241330:CDS
ACGGGAGGTGGCGGTGAGTC+CGG 0.440437 2_2:+16807236 Msa0241330:CDS
TCAGGATTGGTGAAGATTAG+TGG 0.444549 2_2:+16809658 Msa0241330:CDS
TAGAATAGTAGCTGCCAATT+GGG 0.446699 2_2:-16812058 None:intergenic
ATTTATACGGAGCTGAAAGC+TGG 0.450930 2_2:+16810691 Msa0241330:CDS
AGATGCTGCAATGGATGAAT+TGG 0.453548 2_2:+16809486 Msa0241330:CDS
TCTCCTGCACGAAATGTTGA+TGG 0.453739 2_2:-16809078 None:intergenic
TACTTATATCAACACCCAAT+TGG 0.455805 2_2:+16812044 Msa0241330:CDS
GCAGTAACAACAGTGCCATT+TGG 0.456929 2_2:-16811090 None:intergenic
CACAATTTGCGAAGCTTGTG+GGG 0.460810 2_2:+16809033 Msa0241330:CDS
AAAGTGTGATTAACCTCCTA+TGG 0.462791 2_2:-16810784 None:intergenic
GTGTTTGAAATCGGTTCGCC+AGG 0.467602 2_2:+16809994 Msa0241330:CDS
CAACTGCATTTCAATTATCA+AGG 0.467731 2_2:+16811576 Msa0241330:CDS
CATCTTCCACATTAAGCACT+TGG 0.467910 2_2:-16812020 None:intergenic
TCATAAACCGTTCGGTTTGG+TGG 0.470954 2_2:-16809358 None:intergenic
GAACAAGAGAACTCTGTTGA+AGG 0.473464 2_2:+16808363 Msa0241330:CDS
CATTTAACTCTTGATAGCAT+TGG 0.474351 2_2:+16811018 Msa0241330:CDS
GAAAAGTTGATGCTGGTGTA+TGG 0.477684 2_2:+16810210 Msa0241330:CDS
CTGCACCTCTTTCTCGTGGT+TGG 0.478289 2_2:+16810273 Msa0241330:CDS
TGAGAAATGGATTACTCAAC+GGG 0.478841 2_2:+16807218 None:intergenic
TAACAACAGTGCCATTTGGC+TGG 0.481596 2_2:-16811086 None:intergenic
TCAGTGATCCAAACACTTGA+AGG 0.482426 2_2:+16810910 Msa0241330:intron
TTAAGAGCTTGCTCAAACTC+CGG 0.486029 2_2:-16809295 None:intergenic
TTGAGCACTCATAAACCGTT+CGG 0.491484 2_2:-16809366 None:intergenic
TGTGAATGCTTAACAATGCC+TGG 0.491755 2_2:+16810979 Msa0241330:CDS
TGATGGTCTTCCACAGGAAA+TGG 0.495341 2_2:-16809061 None:intergenic
CCCACAAGCTTCGCAAATTG+TGG 0.495588 2_2:-16809032 None:intergenic
ATGTGTGCAATTTCATGCAT+TGG 0.495739 2_2:-16811532 None:intergenic
TCATTCGTGAAATGCCTCAT+GGG 0.496695 2_2:+16810315 Msa0241330:CDS
GAGTTACCAATCCTTCCAAA+TGG 0.500630 2_2:+16811871 Msa0241330:CDS
TACATGTATAGAGATCTTGT+TGG 0.502405 2_2:+16810660 Msa0241330:CDS
CAGCTTTGGTAACAATTGTA+GGG 0.502451 2_2:-16809960 None:intergenic
GGTTGGCATGTTTCTCGACT+CGG 0.505106 2_2:+16809690 Msa0241330:CDS
TATATAATGTATGATCCTAC+AGG 0.508050 2_2:-16811793 None:intergenic
CGTGGTTGGAAACATCCCTC+TGG 0.513481 2_2:+16810287 Msa0241330:CDS
GTCGTTCTGCCTCGTCTGGA+TGG 0.514221 2_2:-16808285 None:intergenic
CGAAAATCTCAAAATAAAAG+AGG 0.514839 2_2:+16809000 Msa0241330:CDS
ATTTCAAATGGACCCTATCA+TGG 0.514869 2_2:+16811553 Msa0241330:CDS
TTAACTCTTGATAGCATTGG+TGG 0.517292 2_2:+16811021 Msa0241330:CDS
CTGCAATGGATGAATTGGTT+AGG 0.518596 2_2:+16809491 Msa0241330:CDS
GATGATACAAGCCAGCCAAA+TGG 0.520622 2_2:+16811075 Msa0241330:CDS
CTTAACAATGCCTGGTCAAG+TGG 0.522028 2_2:+16810987 Msa0241330:CDS
ATCTTCCAAATATTCAGGAT+TGG 0.522094 2_2:+16809645 Msa0241330:CDS
AAATTACAAAACCATTTGGA+AGG 0.523071 2_2:-16811882 None:intergenic
AGGTGCAGTGTTTGGTCGAG+AGG 0.523583 2_2:-16810258 None:intergenic
CATCCCTACTCAGAGGCAAA+TGG 0.525201 2_2:+16811744 Msa0241330:CDS
TCACCATTTGCCTCTGAGTA+GGG 0.526700 2_2:-16811747 None:intergenic
AACTCTTGATAGCATTGGTG+GGG 0.529682 2_2:+16811023 Msa0241330:CDS
ACTATGAGGAGAGGTGTGCT+AGG 0.529898 2_2:+16809409 Msa0241330:CDS
GCCACAATTTGCGAAGCTTG+TGG 0.529984 2_2:+16809031 Msa0241330:CDS
GAGGTAAGACGTTTGTAGGA+AGG 0.532797 2_2:-16807299 None:intergenic
ATTAGTGGCATAGATTTGGT+TGG 0.532831 2_2:+16809673 Msa0241330:CDS
AAAACTTTCTGAGCAGGCAG+AGG 0.539007 2_2:-16811132 None:intergenic
TGGCTGGCTTGTATCATCGT+CGG 0.539237 2_2:-16811070 None:intergenic
TAACTCTTGATAGCATTGGT+GGG 0.540658 2_2:+16811022 Msa0241330:CDS
ATGGATTACTCAACGGGAGG+TGG 0.542229 2_2:+16807224 Msa0241330:CDS
GAAATGCAGTTGCCATGATA+GGG 0.544552 2_2:-16811565 None:intergenic
ATCATTCGTGAAATGCCTCA+TGG 0.548977 2_2:+16810314 Msa0241330:CDS
GCATCTAACGGTATTGAAGA+TGG 0.549299 2_2:+16811943 Msa0241330:CDS
TTTCTGATGAAGTTTCATGA+AGG 0.549807 2_2:+16808255 Msa0241330:intron
GGTCACTTGGGTTGAACATG+TGG 0.552782 2_2:+16810611 Msa0241330:intron
GAAAGTTTCACTTCTCCTGT+AGG 0.556978 2_2:+16811778 Msa0241330:CDS
TACTGCAGAAAAGTTGATGC+TGG 0.557695 2_2:+16810203 Msa0241330:CDS
ATTATGGATGTGGCTTTAAG+GGG 0.559199 2_2:+16811835 Msa0241330:CDS
GATAAAGCTTGCTGATAGAA+TGG 0.559844 2_2:+16810945 Msa0241330:CDS
GATTACTCAACGGGAGGTGG+CGG 0.561587 2_2:+16807227 Msa0241330:CDS
GTTACTAATGTCTTCATCAC+CGG 0.562506 2_2:-16807255 None:intergenic
ATACCGTTAGATGCTCCAAA+TGG 0.568664 2_2:-16811934 None:intergenic
TTCAAGTATGGATGTTTGAG+CGG 0.568957 2_2:-16807321 None:intergenic
ATGTGAAGGATGCTCTTATG+AGG 0.569555 2_2:+16812082 Msa0241330:CDS
TTGGGTTGAACATGTGGAAG+TGG 0.571125 2_2:+16810617 Msa0241330:CDS
TGGTTAAACTCCACTTGACC+AGG 0.571210 2_2:-16810997 None:intergenic
TTCATGGTAATCTAACTATG+AGG 0.572450 2_2:+16809395 Msa0241330:CDS
AGATCCTACAAAGCGATCAC+AGG 0.573425 2_2:+16811167 Msa0241330:CDS
TGTTTCCAACCACGAGAAAG+AGG 0.576681 2_2:-16810278 None:intergenic
AGATGGCTCGTTGTTAACAT+TGG 0.578589 2_2:+16811960 Msa0241330:CDS
AGCTACTATTCTAAATGTGA+AGG 0.578993 2_2:+16812068 Msa0241330:CDS
AGACCATCAACATTTCGTGC+AGG 0.579781 2_2:+16809075 Msa0241330:CDS
TCTGCATGTAGCTTGCAAGA+AGG 0.582722 2_2:-16809258 None:intergenic
AATCTCCAAATACTCAAGAT+GGG 0.583747 2_2:+16809545 Msa0241330:CDS
AAAAGTTGATGCTGGTGTAT+GGG 0.585328 2_2:+16810211 Msa0241330:CDS
AGCAGGCAGAGGGAGCCAAA+TGG 0.585985 2_2:-16811121 None:intergenic
AAATGTTGATGGTCTTCCAC+AGG 0.587353 2_2:-16809067 None:intergenic
CTATGAGGAGAGGTGTGCTA+GGG 0.589969 2_2:+16809410 Msa0241330:CDS
TGAAATTCCACCAAACCGAA+CGG 0.595042 2_2:+16809351 Msa0241330:CDS
AAATGCTCAGCTGAAACAAG+AGG 0.596460 2_2:+16809111 Msa0241330:CDS
ATGGTGCATTAAGATTTGGT+TGG 0.601403 2_2:-16811915 None:intergenic
ATCACCATTTGCCTCTGAGT+AGG 0.601759 2_2:-16811748 None:intergenic
AACACTGCACCTCTTTCTCG+TGG 0.603163 2_2:+16810269 Msa0241330:CDS
CAGTGATCCAAACACTTGAA+GGG 0.609013 2_2:+16810911 Msa0241330:intron
CATTCGTGAAATGCCTCATG+GGG 0.609503 2_2:+16810316 Msa0241330:CDS
AAACTTTCTGAGCAGGCAGA+GGG 0.610006 2_2:-16811131 None:intergenic
TTGAGAAATGGATTACTCAA+CGG 0.612292 2_2:+16807217 None:intergenic
GCACCATTTGGAGCATCTAA+CGG 0.612631 2_2:+16811931 Msa0241330:CDS
GGTTCGCCAGGAAGTCGAGA+TGG 0.615372 2_2:+16810006 Msa0241330:CDS
AAGTATGGATGTTTGAGCGG+AGG 0.615778 2_2:-16807318 None:intergenic
TGGTCTTCCACAGGAAATGG+TGG 0.617088 2_2:-16809058 None:intergenic
TCAAGTTGTAGATGCTGCAA+TGG 0.619732 2_2:+16809477 Msa0241330:CDS
GCAGAAAGAGATAACACTAC+CGG 0.621791 2_2:+16809276 Msa0241330:CDS
GTTCTGCCTCGTCTGGATGG+TGG 0.624308 2_2:-16808282 None:intergenic
ATACCTGTTGAAGAAACCAT+AGG 0.625785 2_2:+16810768 Msa0241330:CDS
AGGCAGAGGGAGCCAAATGG+TGG 0.636325 2_2:-16811118 None:intergenic
AATTCGCGAGGCCTCACTAG+AGG 0.637219 2_2:-16810167 None:intergenic
CCTGTTGAAGAAACCATAGG+AGG 0.639101 2_2:+16810771 Msa0241330:CDS
TCACGAATGATGCATCCAGA+GGG 0.641603 2_2:-16810302 None:intergenic
CTGGCTTGTATCATCGTCGG+TGG 0.642130 2_2:-16811067 None:intergenic
ACAATTTGCGAAGCTTGTGG+GGG 0.652499 2_2:+16809034 Msa0241330:CDS
TTCACGAATGATGCATCCAG+AGG 0.657086 2_2:-16810303 None:intergenic
GGTAATCTAACTATGAGGAG+AGG 0.673701 2_2:+16809400 Msa0241330:CDS
GGAATGCCACCATCCAGACG+AGG 0.674051 2_2:+16808276 Msa0241330:CDS
CGAATGATGTTAAATTCGCG+AGG 0.685235 2_2:-16810179 None:intergenic
TGATCCAAACACTTGAAGGG+AGG 0.696996 2_2:+16810914 Msa0241330:CDS
AGTCATTCATCCCTACTCAG+AGG 0.722493 2_2:+16811737 Msa0241330:intron
ATTCGTGAAATGCCTCATGG+GGG 0.745536 2_2:+16810317 Msa0241330:CDS
AGTTGACCAAGTGCTTAATG+TGG 0.750936 2_2:+16812014 Msa0241330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTATCTATAATTTTT+CGG + chr2_2:16809813-16809832 Msa0241330:intron 10.0%
!!! AAAAAAAGCATTTAAAATTT+GGG - chr2_2:16810112-16810131 None:intergenic 10.0%
!! AAAAAGAATCTAATATAATT+TGG - chr2_2:16810518-16810537 None:intergenic 10.0%
!!! TATATATACTATACATTTTT+AGG + chr2_2:16810590-16810609 Msa0241330:intron 10.0%
!! TAATTAATTATATAAGTGAT+TGG - chr2_2:16811700-16811719 None:intergenic 10.0%
!!! AATTAATTATTTTTTTCATG+TGG + chr2_2:16811711-16811730 Msa0241330:intron 10.0%
!!! TATTCAATTTTTGATTTTGA+AGG + chr2_2:16807401-16807420 Msa0241330:intron 15.0%
!!! TATTCAATTTTTGATTTTGA+AGG + chr2_2:16807401-16807420 Msa0241330:intron 15.0%
!!! GTGAATTTTTTTTTTTTTTG+TGG + chr2_2:16807622-16807641 Msa0241330:intron 15.0%
!!! AATTTTTTTTTTTTTTGTGG+TGG + chr2_2:16807625-16807644 Msa0241330:intron 15.0%
!! TATTTCAAACCTATATAAAA+AGG - chr2_2:16807793-16807812 None:intergenic 15.0%
!! TACTAACTATATTTAATGTA+TGG + chr2_2:16807929-16807948 Msa0241330:intron 15.0%
!!! GTTTTCTATTAGTAATTTTA+TGG - chr2_2:16808603-16808622 None:intergenic 15.0%
!! CCAAATTTACAAATATAATT+AGG - chr2_2:16809208-16809227 None:intergenic 15.0%
!! CCTAATTATATTTGTAAATT+TGG + chr2_2:16809205-16809224 Msa0241330:intron 15.0%
!!! GATATATAACTCATTTTTAT+AGG + chr2_2:16809918-16809937 Msa0241330:intron 15.0%
!!! CAAAAAAAGCATTTAAAATT+TGG - chr2_2:16810113-16810132 None:intergenic 15.0%
!!! CAAATTTTAAATGCTTTTTT+TGG + chr2_2:16810111-16810130 Msa0241330:intron 15.0%
!!! TAATATAATTTGGAGTATAA+GGG - chr2_2:16810508-16810527 None:intergenic 15.0%
!! AGCTAAATATAAAATTTACA+AGG - chr2_2:16810854-16810873 None:intergenic 15.0%
!!! AGTTCACATATAATTTTTAA+TGG + chr2_2:16811460-16811479 Msa0241330:intron 15.0%
!!! TGTTAATAATTTTGTTATAG+TGG + chr2_2:16811488-16811507 Msa0241330:intron 15.0%
!!! GTTAATAATTTTGTTATAGT+GGG + chr2_2:16811489-16811508 Msa0241330:intron 15.0%
!!! AGCATAAATTTTAAAAGAAA+TGG - chr2_2:16811608-16811627 None:intergenic 15.0%
!!! AAGATTACTCATTTTGTTAA+CGG + chr2_2:16807348-16807367 Msa0241330:intron 20.0%
!! ATCTGTTACTATTATCAAAA+GGG - chr2_2:16807727-16807746 None:intergenic 20.0%
!! TATCTGTTACTATTATCAAA+AGG - chr2_2:16807728-16807747 None:intergenic 20.0%
!!! TTCACAAAACCTTTTTATAT+AGG + chr2_2:16807781-16807800 Msa0241330:intron 20.0%
!!! TGTTTTAATTTTCCTTTGTT+TGG + chr2_2:16807874-16807893 Msa0241330:intron 20.0%
!!! TTCGAAGAATTAATTTTGTA+TGG + chr2_2:16807960-16807979 Msa0241330:intron 20.0%
!!! GTTGAATTTAAAATCATGAA+TGG + chr2_2:16807982-16808001 Msa0241330:intron 20.0%
!! ACGATGAAATTAAACTAAAA+TGG - chr2_2:16808017-16808036 None:intergenic 20.0%
!! CTTAAACACTTATGAATATA+TGG + chr2_2:16808066-16808085 Msa0241330:intron 20.0%
!!! ATTTTGACTATAAAGTGAAA+AGG - chr2_2:16808398-16808417 None:intergenic 20.0%
!! AACTTATTCAAATATCCAAA+TGG - chr2_2:16808433-16808452 None:intergenic 20.0%
!! ATATAAAATTATTAGCACCA+AGG - chr2_2:16808906-16808925 None:intergenic 20.0%
!! ATAATTAGGTATTTATGCAT+GGG - chr2_2:16809194-16809213 None:intergenic 20.0%
!! TATAATTAGGTATTTATGCA+TGG - chr2_2:16809195-16809214 None:intergenic 20.0%
!! CATCAATTATAATTTACTAC+TGG + chr2_2:16809717-16809736 Msa0241330:intron 20.0%
!! TCACAAAATATTAATGAAAG+AGG - chr2_2:16809872-16809891 None:intergenic 20.0%
!!! TGGGAAAAAATTTTATAATC+AGG - chr2_2:16810093-16810112 None:intergenic 20.0%
!!! TATATTTCTAAGAGAATTGA+TGG + chr2_2:16810361-16810380 Msa0241330:intron 20.0%
!!! TTTTTCTTGGTTGTATATAT+GGG + chr2_2:16810474-16810493 Msa0241330:intron 20.0%
!!! CTAATATAATTTGGAGTATA+AGG - chr2_2:16810509-16810528 None:intergenic 20.0%
!! AATAGATGAATAGAGATATT+TGG - chr2_2:16810829-16810848 None:intergenic 20.0%
!! TTATAGAGTAAACAATCATT+TGG - chr2_2:16811399-16811418 None:intergenic 20.0%
!!! GTAATCTTACTTTTCAAGTA+TGG - chr2_2:16807336-16807355 None:intergenic 25.0%
!!! AAAAAAAAAAGTGATGGACT+TGG - chr2_2:16807573-16807592 None:intergenic 25.0%
!!! AAGTCCATCACTTTTTTTTT+TGG + chr2_2:16807572-16807591 Msa0241330:intron 25.0%
!!! TTTTTTTTTTTTGTGGTGGT+CGG + chr2_2:16807629-16807648 Msa0241330:intron 25.0%
! GATAACGCATAATATATACA+AGG - chr2_2:16807670-16807689 None:intergenic 25.0%
! ATATATGGAAGCTAATTAGA+TGG + chr2_2:16808081-16808100 Msa0241330:intron 25.0%
! AGATGGATATGTATTTAAAG+TGG + chr2_2:16808098-16808117 Msa0241330:intron 25.0%
!! GATATAGCCTTTTTAATAAG+TGG - chr2_2:16808146-16808165 None:intergenic 25.0%
!!! AACCAAAACTTGATTTGTTT+GGG - chr2_2:16808340-16808359 None:intergenic 25.0%
!!! AAACCAAAACTTGATTTGTT+TGG - chr2_2:16808341-16808360 None:intergenic 25.0%
! AATTTGAGTAAACATCCATT+TGG + chr2_2:16808415-16808434 Msa0241330:intron 25.0%
! GGATATTTGAATAAGTTAGA+AGG + chr2_2:16808436-16808455 Msa0241330:intron 25.0%
! TATTTGAATAAGTTAGAAGG+TGG + chr2_2:16808439-16808458 Msa0241330:intron 25.0%
!!! GATTGTGTTTTTTTTTCTTC+AGG + chr2_2:16808631-16808650 Msa0241330:intron 25.0%
! TATCAAACAAATACCGTATA+TGG - chr2_2:16808729-16808748 None:intergenic 25.0%
!!! GTGTAGTTTTTGAAAAATCA+CGG - chr2_2:16808780-16808799 None:intergenic 25.0%
! AAAAACTACACTATCTATCA+TGG + chr2_2:16808789-16808808 Msa0241330:intron 25.0%
! TATTAGCACTAAGCATATAT+TGG - chr2_2:16808849-16808868 None:intergenic 25.0%
! CGAAAATCTCAAAATAAAAG+AGG + chr2_2:16809000-16809019 Msa0241330:CDS 25.0%
!!! ACTCATTTTTATAGGTCAAA+TGG + chr2_2:16809926-16809945 Msa0241330:intron 25.0%
!! ACTATCAAAGTGTTTGAAAT+CGG + chr2_2:16809985-16810004 Msa0241330:CDS 25.0%
!!! TTTCCTATTTCTCTTTTTCT+TGG + chr2_2:16810461-16810480 Msa0241330:intron 25.0%
!! CTTTTTCTTGGTTGTATATA+TGG + chr2_2:16810473-16810492 Msa0241330:intron 25.0%
!!! TATACATTTTTAGGTCACTT+GGG + chr2_2:16810599-16810618 Msa0241330:intron 25.0%
! ATGAATAGAGATATTTGGAA+GGG - chr2_2:16810824-16810843 None:intergenic 25.0%
!! TTATAATTTAGAGCAAACTG+TGG + chr2_2:16811204-16811223 Msa0241330:intron 25.0%
!!! ATAATTTTGTTATAGTGGGA+TGG + chr2_2:16811493-16811512 Msa0241330:intron 25.0%
! TATATACCGAACAATTTCTA+GGG - chr2_2:16811666-16811685 None:intergenic 25.0%
! TATATAATGTATGATCCTAC+AGG - chr2_2:16811796-16811815 None:intergenic 25.0%
! TCCAACTGATAGAAAAATTA+TGG + chr2_2:16811819-16811838 Msa0241330:CDS 25.0%
!! TCCATAATTTTTCTATCAGT+TGG - chr2_2:16811823-16811842 None:intergenic 25.0%
! TGATAGAAAAATTATGGATG+TGG + chr2_2:16811825-16811844 Msa0241330:CDS 25.0%
! AAATTACAAAACCATTTGGA+AGG - chr2_2:16811885-16811904 None:intergenic 25.0%
! GAACAAATTACAAAACCATT+TGG - chr2_2:16811889-16811908 None:intergenic 25.0%
ATTAGTAACTTTCGAGATGA+TGG + chr2_2:16807269-16807288 Msa0241330:CDS 30.0%
! GGACTTGGTTAATATATAAC+TGG - chr2_2:16807558-16807577 None:intergenic 30.0%
CCAACCAAAAAAAAAAGTGA+TGG - chr2_2:16807579-16807598 None:intergenic 30.0%
!!! CCATCACTTTTTTTTTTGGT+TGG + chr2_2:16807576-16807595 Msa0241330:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGTC+GGG + chr2_2:16807630-16807649 Msa0241330:intron 30.0%
CATAATATATACAAGGTCCA+GGG - chr2_2:16807663-16807682 None:intergenic 30.0%
AAAGGAATTAAGCCAAACAA+AGG - chr2_2:16807889-16807908 None:intergenic 30.0%
! TTTGTTTGGCTTAATTCCTT+TGG + chr2_2:16807888-16807907 Msa0241330:intron 30.0%
GACTGAACCACTTATTAAAA+AGG + chr2_2:16808136-16808155 Msa0241330:intron 30.0%
TTTCTGATGAAGTTTCATGA+AGG + chr2_2:16808255-16808274 Msa0241330:intron 30.0%
ATTACACATGCTTCCATATA+CGG + chr2_2:16808713-16808732 Msa0241330:intron 30.0%
AAGCATATATTGGTATCATG+TGG - chr2_2:16808839-16808858 None:intergenic 30.0%
TTCATGGTAATCTAACTATG+AGG + chr2_2:16809395-16809414 Msa0241330:CDS 30.0%
AAATCTCCAAATACTCAAGA+TGG + chr2_2:16809544-16809563 Msa0241330:CDS 30.0%
AATCTCCAAATACTCAAGAT+GGG + chr2_2:16809545-16809564 Msa0241330:CDS 30.0%
!! CCTTTAAAGTGATTGTTCTT+TGG - chr2_2:16809607-16809626 None:intergenic 30.0%
CCAAAGAACAATCACTTTAA+AGG + chr2_2:16809604-16809623 Msa0241330:CDS 30.0%
GAAGAATCTTCCAAATATTC+AGG + chr2_2:16809640-16809659 Msa0241330:CDS 30.0%
ATCTTCCAAATATTCAGGAT+TGG + chr2_2:16809645-16809664 Msa0241330:CDS 30.0%
! ATATTTTATCACCTCTAGTG+AGG + chr2_2:16810156-16810175 Msa0241330:CDS 30.0%
! GAAAAGTGCGCATATAATTT+AGG - chr2_2:16810445-16810464 None:intergenic 30.0%
CAACCAAGAAAAAGAGAAAT+AGG - chr2_2:16810467-16810486 None:intergenic 30.0%
!!! CTATACATTTTTAGGTCACT+TGG + chr2_2:16810598-16810617 Msa0241330:intron 30.0%
CTCTATACATGTAATGTGTA+TGG - chr2_2:16810653-16810672 None:intergenic 30.0%
TACATGTATAGAGATCTTGT+TGG + chr2_2:16810660-16810679 Msa0241330:CDS 30.0%
GTTGGCGACTATAATTTATA+CGG + chr2_2:16810678-16810697 Msa0241330:CDS 30.0%
GATGAATAGAGATATTTGGA+AGG - chr2_2:16810825-16810844 None:intergenic 30.0%
CAATGCTATCAAGAGTTAAA+TGG - chr2_2:16811020-16811039 None:intergenic 30.0%
! CATTTAACTCTTGATAGCAT+TGG + chr2_2:16811018-16811037 Msa0241330:CDS 30.0%
AATTCAAAAACTTTCTGAGC+AGG - chr2_2:16811141-16811160 None:intergenic 30.0%
! TTGGTCCTCAAATATGTTTT+TGG + chr2_2:16811291-16811310 Msa0241330:intron 30.0%
GCTAACCAAAAACATATTTG+AGG - chr2_2:16811299-16811318 None:intergenic 30.0%
GAAATTGCACACATTTCAAA+TGG + chr2_2:16811541-16811560 Msa0241330:CDS 30.0%
CAACTGCATTTCAATTATCA+AGG + chr2_2:16811576-16811595 Msa0241330:CDS 30.0%
CTATATACCGAACAATTTCT+AGG - chr2_2:16811667-16811686 None:intergenic 30.0%
! AAATTATGGATGTGGCTTTA+AGG + chr2_2:16811833-16811852 Msa0241330:CDS 30.0%
!! AATTATGGATGTGGCTTTAA+GGG + chr2_2:16811834-16811853 Msa0241330:CDS 30.0%
TACTTATATCAACACCCAAT+TGG + chr2_2:16812044-16812063 Msa0241330:CDS 30.0%
AGCTACTATTCTAAATGTGA+AGG + chr2_2:16812068-16812087 Msa0241330:CDS 30.0%
GTTACTAATGTCTTCATCAC+CGG - chr2_2:16807258-16807277 None:intergenic 35.0%
TTCAAGTATGGATGTTTGAG+CGG - chr2_2:16807324-16807343 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGTCG+GGG + chr2_2:16807631-16807650 Msa0241330:intron 35.0%
GCATAATATATACAAGGTCC+AGG - chr2_2:16807664-16807683 None:intergenic 35.0%
TTATATAGTAGCGTCACCAA+AGG - chr2_2:16807907-16807926 None:intergenic 35.0%
! AGCCCAAACAAATCAAGTTT+TGG + chr2_2:16808335-16808354 Msa0241330:CDS 35.0%
AACTACACTATCTATCATGG+TGG + chr2_2:16808792-16808811 Msa0241330:intron 35.0%
CCAAGGAAATTCGATTCTTT+AGG - chr2_2:16808889-16808908 None:intergenic 35.0%
CCTAAAGAATCGAATTTCCT+TGG + chr2_2:16808886-16808905 Msa0241330:intron 35.0%
CAACATGAACGAGAGAAAAA+CGG + chr2_2:16808944-16808963 Msa0241330:CDS 35.0%
TTTGGAGATTTGACCCAAAA+AGG - chr2_2:16809535-16809554 None:intergenic 35.0%
CTTCACCAATCCTGAATATT+TGG - chr2_2:16809653-16809672 None:intergenic 35.0%
GAAGATTAGTGGCATAGATT+TGG + chr2_2:16809669-16809688 Msa0241330:CDS 35.0%
! ATTAGTGGCATAGATTTGGT+TGG + chr2_2:16809673-16809692 Msa0241330:CDS 35.0%
! CAGCTTTGGTAACAATTGTA+GGG - chr2_2:16809963-16809982 None:intergenic 35.0%
! TCAGCTTTGGTAACAATTGT+AGG - chr2_2:16809964-16809983 None:intergenic 35.0%
! CACTTTGATAGTTTCAGCTT+TGG - chr2_2:16809977-16809996 None:intergenic 35.0%
!! AAAAGTTGATGCTGGTGTAT+GGG + chr2_2:16810211-16810230 Msa0241330:CDS 35.0%
GTGCGCATATAATTTAGGAA+AGG - chr2_2:16810440-16810459 None:intergenic 35.0%
AGAATGTGTGAGAGATCTTT+AGG + chr2_2:16810729-16810748 Msa0241330:CDS 35.0%
ATACCTGTTGAAGAAACCAT+AGG + chr2_2:16810768-16810787 Msa0241330:CDS 35.0%
AAAGTGTGATTAACCTCCTA+TGG - chr2_2:16810787-16810806 None:intergenic 35.0%
!! GATAAAGCTTGCTGATAGAA+TGG + chr2_2:16810945-16810964 Msa0241330:CDS 35.0%
! TTAACTCTTGATAGCATTGG+TGG + chr2_2:16811021-16811040 Msa0241330:CDS 35.0%
!! TAACTCTTGATAGCATTGGT+GGG + chr2_2:16811022-16811041 Msa0241330:CDS 35.0%
ATCGCTTTGTAGGATCTTTA+AGG - chr2_2:16811164-16811183 None:intergenic 35.0%
AATATTCTCCAATGTGTCTC+TGG + chr2_2:16811260-16811279 Msa0241330:intron 35.0%
ATGTGTGCAATTTCATGCAT+TGG - chr2_2:16811535-16811554 None:intergenic 35.0%
ATTTCAAATGGACCCTATCA+TGG + chr2_2:16811553-16811572 Msa0241330:CDS 35.0%
CTTATGCCCTAGAAATTGTT+CGG + chr2_2:16811657-16811676 Msa0241330:intron 35.0%
!! ATTATGGATGTGGCTTTAAG+GGG + chr2_2:16811835-16811854 Msa0241330:CDS 35.0%
ACAAAACCATTTGGAAGGAT+TGG - chr2_2:16811880-16811899 None:intergenic 35.0%
! ATGGTGCATTAAGATTTGGT+TGG - chr2_2:16811918-16811937 None:intergenic 35.0%
CCAAATGGTGCATTAAGATT+TGG - chr2_2:16811922-16811941 None:intergenic 35.0%
CCAAATCTTAATGCACCATT+TGG + chr2_2:16811919-16811938 Msa0241330:CDS 35.0%
TAGAATAGTAGCTGCCAATT+GGG - chr2_2:16812061-16812080 None:intergenic 35.0%
TTAGAATAGTAGCTGCCAAT+TGG - chr2_2:16812062-16812081 None:intergenic 35.0%
TCTAGTGAGCTTAGCTCAAT+TGG - chr2_2:16807697-16807716 None:intergenic 40.0%
GTCAATTGGCTGTGAAAGTT+GGG + chr2_2:16808308-16808327 Msa0241330:CDS 40.0%
GAACAAGAGAACTCTGTTGA+AGG + chr2_2:16808363-16808382 Msa0241330:CDS 40.0%
!! AAATGTTGATGGTCTTCCAC+AGG - chr2_2:16809070-16809089 None:intergenic 40.0%
AAATGCTCAGCTGAAACAAG+AGG + chr2_2:16809111-16809130 Msa0241330:CDS 40.0%
GCAGAAAGAGATAACACTAC+CGG + chr2_2:16809276-16809295 Msa0241330:CDS 40.0%
! TTAAGAGCTTGCTCAAACTC+CGG - chr2_2:16809298-16809317 None:intergenic 40.0%
TGAAATTCCACCAAACCGAA+CGG + chr2_2:16809351-16809370 Msa0241330:CDS 40.0%
TTGAGCACTCATAAACCGTT+CGG - chr2_2:16809369-16809388 None:intergenic 40.0%
GAGTGCTCAAATCATGTTCA+TGG + chr2_2:16809379-16809398 Msa0241330:CDS 40.0%
GGTAATCTAACTATGAGGAG+AGG + chr2_2:16809400-16809419 Msa0241330:CDS 40.0%
! TCAAGTTGTAGATGCTGCAA+TGG + chr2_2:16809477-16809496 Msa0241330:CDS 40.0%
AGATGCTGCAATGGATGAAT+TGG + chr2_2:16809486-16809505 Msa0241330:CDS 40.0%
CTGCAATGGATGAATTGGTT+AGG + chr2_2:16809491-16809510 Msa0241330:CDS 40.0%
!!! TGAGAGTTGATGAGCCTTTT+TGG + chr2_2:16809518-16809537 Msa0241330:CDS 40.0%
!!! GAGAGTTGATGAGCCTTTTT+GGG + chr2_2:16809519-16809538 Msa0241330:CDS 40.0%
GTGTACCCATCTTGAGTATT+TGG - chr2_2:16809553-16809572 None:intergenic 40.0%
! TCAGGATTGGTGAAGATTAG+TGG + chr2_2:16809658-16809677 Msa0241330:CDS 40.0%
!! TCGAGATGGAGCTTTATTAC+TGG + chr2_2:16810020-16810039 Msa0241330:CDS 40.0%
CGAATGATGTTAAATTCGCG+AGG - chr2_2:16810182-16810201 None:intergenic 40.0%
!! TACTGCAGAAAAGTTGATGC+TGG + chr2_2:16810203-16810222 Msa0241330:CDS 40.0%
!! GAAAAGTTGATGCTGGTGTA+TGG + chr2_2:16810210-16810229 Msa0241330:CDS 40.0%
ATCATTCGTGAAATGCCTCA+TGG + chr2_2:16810314-16810333 Msa0241330:CDS 40.0%
TCATTCGTGAAATGCCTCAT+GGG + chr2_2:16810315-16810334 Msa0241330:CDS 40.0%
ATTTATACGGAGCTGAAAGC+TGG + chr2_2:16810691-16810710 Msa0241330:CDS 40.0%
TCAGTGATCCAAACACTTGA+AGG + chr2_2:16810910-16810929 Msa0241330:intron 40.0%
CAGTGATCCAAACACTTGAA+GGG + chr2_2:16810911-16810930 Msa0241330:intron 40.0%
TATTCCTCCCTTCAAGTGTT+TGG - chr2_2:16810921-16810940 None:intergenic 40.0%
TGTGAATGCTTAACAATGCC+TGG + chr2_2:16810979-16810998 Msa0241330:CDS 40.0%
!! AACTCTTGATAGCATTGGTG+GGG + chr2_2:16811023-16811042 Msa0241330:CDS 40.0%
TAGTGGGATGGTCTTTCTTA+TGG + chr2_2:16811505-16811524 Msa0241330:intron 40.0%
GAAATGCAGTTGCCATGATA+GGG - chr2_2:16811568-16811587 None:intergenic 40.0%
TGAAATGCAGTTGCCATGAT+AGG - chr2_2:16811569-16811588 None:intergenic 40.0%
GAAAGTTTCACTTCTCCTGT+AGG + chr2_2:16811778-16811797 Msa0241330:CDS 40.0%
GAGTTACCAATCCTTCCAAA+TGG + chr2_2:16811871-16811890 Msa0241330:CDS 40.0%
ATACCGTTAGATGCTCCAAA+TGG - chr2_2:16811937-16811956 None:intergenic 40.0%
! GCATCTAACGGTATTGAAGA+TGG + chr2_2:16811943-16811962 Msa0241330:CDS 40.0%
AGATGGCTCGTTGTTAACAT+TGG + chr2_2:16811960-16811979 Msa0241330:CDS 40.0%
!! TGGACTAGTGCTCAGAATTT+GGG - chr2_2:16811989-16812008 None:intergenic 40.0%
!! ATGGACTAGTGCTCAGAATT+TGG - chr2_2:16811990-16812009 None:intergenic 40.0%
AGTTGACCAAGTGCTTAATG+TGG + chr2_2:16812014-16812033 Msa0241330:CDS 40.0%
CATCTTCCACATTAAGCACT+TGG - chr2_2:16812023-16812042 None:intergenic 40.0%
ATGTGAAGGATGCTCTTATG+AGG + chr2_2:16812082-16812101 Msa0241330:CDS 40.0%
GAGGTAAGACGTTTGTAGGA+AGG - chr2_2:16807302-16807321 None:intergenic 45.0%
AAGTATGGATGTTTGAGCGG+AGG - chr2_2:16807321-16807340 None:intergenic 45.0%
CGTCAATTGGCTGTGAAAGT+TGG + chr2_2:16808307-16808326 Msa0241330:CDS 45.0%
ATGTGGACGTGTCAGAATCA+CGG - chr2_2:16808822-16808841 None:intergenic 45.0%
AGAAAAACGGTGCTCTTCGT+CGG + chr2_2:16808957-16808976 Msa0241330:CDS 45.0%
CCACAATTTGCGAAGCTTGT+GGG + chr2_2:16809032-16809051 Msa0241330:CDS 45.0%
CACAATTTGCGAAGCTTGTG+GGG + chr2_2:16809033-16809052 Msa0241330:CDS 45.0%
ACAATTTGCGAAGCTTGTGG+GGG + chr2_2:16809034-16809053 Msa0241330:CDS 45.0%
TGATGGTCTTCCACAGGAAA+TGG - chr2_2:16809064-16809083 None:intergenic 45.0%
AGACCATCAACATTTCGTGC+AGG + chr2_2:16809075-16809094 Msa0241330:CDS 45.0%
TCTCCTGCACGAAATGTTGA+TGG - chr2_2:16809081-16809100 None:intergenic 45.0%
! TCTGCATGTAGCTTGCAAGA+AGG - chr2_2:16809261-16809280 None:intergenic 45.0%
!! TCATAAACCGTTCGGTTTGG+TGG - chr2_2:16809361-16809380 None:intergenic 45.0%
CACTCATAAACCGTTCGGTT+TGG - chr2_2:16809364-16809383 None:intergenic 45.0%
TGTTTCCAACCACGAGAAAG+AGG - chr2_2:16810281-16810300 None:intergenic 45.0%
TCACGAATGATGCATCCAGA+GGG - chr2_2:16810305-16810324 None:intergenic 45.0%
TTCACGAATGATGCATCCAG+AGG - chr2_2:16810306-16810325 None:intergenic 45.0%
CATTCGTGAAATGCCTCATG+GGG + chr2_2:16810316-16810335 Msa0241330:CDS 45.0%
ATTCGTGAAATGCCTCATGG+GGG + chr2_2:16810317-16810336 Msa0241330:CDS 45.0%
!! TTGGGTTGAACATGTGGAAG+TGG + chr2_2:16810617-16810636 Msa0241330:CDS 45.0%
CCTCCTATGGTTTCTTCAAC+AGG - chr2_2:16810774-16810793 None:intergenic 45.0%
CCTGTTGAAGAAACCATAGG+AGG + chr2_2:16810771-16810790 Msa0241330:CDS 45.0%
TGATCCAAACACTTGAAGGG+AGG + chr2_2:16810914-16810933 Msa0241330:CDS 45.0%
CTTAACAATGCCTGGTCAAG+TGG + chr2_2:16810987-16811006 Msa0241330:CDS 45.0%
TGGTTAAACTCCACTTGACC+AGG - chr2_2:16811000-16811019 None:intergenic 45.0%
GATGATACAAGCCAGCCAAA+TGG + chr2_2:16811075-16811094 Msa0241330:CDS 45.0%
!! TAACAACAGTGCCATTTGGC+TGG - chr2_2:16811089-16811108 None:intergenic 45.0%
! GCAGTAACAACAGTGCCATT+TGG - chr2_2:16811093-16811112 None:intergenic 45.0%
TTACTGCTGCTACCACCATT+TGG + chr2_2:16811106-16811125 Msa0241330:CDS 45.0%
AAACTTTCTGAGCAGGCAGA+GGG - chr2_2:16811134-16811153 None:intergenic 45.0%
AAAACTTTCTGAGCAGGCAG+AGG - chr2_2:16811135-16811154 None:intergenic 45.0%
AGATCCTACAAAGCGATCAC+AGG + chr2_2:16811167-16811186 Msa0241330:CDS 45.0%
GTTACCTGTGATCGCTTTGT+AGG - chr2_2:16811174-16811193 None:intergenic 45.0%
ATTCTCCAATGTGTCTCTGG+TGG + chr2_2:16811263-16811282 Msa0241330:intron 45.0%
TCTGAGTAGGGATGAATGAC+TGG - chr2_2:16811738-16811757 None:intergenic 45.0%
AGTCATTCATCCCTACTCAG+AGG + chr2_2:16811737-16811756 Msa0241330:intron 45.0%
TCACCATTTGCCTCTGAGTA+GGG - chr2_2:16811750-16811769 None:intergenic 45.0%
ATCACCATTTGCCTCTGAGT+AGG - chr2_2:16811751-16811770 None:intergenic 45.0%
! GCACCATTTGGAGCATCTAA+CGG + chr2_2:16811931-16811950 Msa0241330:CDS 45.0%
AGCACTTGGTCAACTGCATA+TGG - chr2_2:16812009-16812028 None:intergenic 45.0%
!! TGAAATAATATATAAAAAAA+TGG - chr2_2:16807765-16807784 None:intergenic 5.0%
!! AAAAATAAATATTAAAAGTT+CGG - chr2_2:16808565-16808584 None:intergenic 5.0%
! ATGGATTACTCAACGGGAGG+TGG + chr2_2:16807224-16807243 Msa0241330:CDS 50.0%
AGCGGAGGTAAGACGTTTGT+AGG - chr2_2:16807306-16807325 None:intergenic 50.0%
GAAAAACGGTGCTCTTCGTC+GGG + chr2_2:16808958-16808977 Msa0241330:CDS 50.0%
GCCACAATTTGCGAAGCTTG+TGG + chr2_2:16809031-16809050 Msa0241330:CDS 50.0%
CCCACAAGCTTCGCAAATTG+TGG - chr2_2:16809035-16809054 None:intergenic 50.0%
TGGTCTTCCACAGGAAATGG+TGG - chr2_2:16809061-16809080 None:intergenic 50.0%
! ACTATGAGGAGAGGTGTGCT+AGG + chr2_2:16809409-16809428 Msa0241330:CDS 50.0%
! CTATGAGGAGAGGTGTGCTA+GGG + chr2_2:16809410-16809429 Msa0241330:CDS 50.0%
GGTTGGCATGTTTCTCGACT+CGG + chr2_2:16809690-16809709 Msa0241330:CDS 50.0%
!! GTGTTTGAAATCGGTTCGCC+AGG + chr2_2:16809994-16810013 Msa0241330:CDS 50.0%
AAAGCTCCATCTCGACTTCC+TGG - chr2_2:16810015-16810034 None:intergenic 50.0%
! CGAGAAAGAGGTGCAGTGTT+TGG - chr2_2:16810269-16810288 None:intergenic 50.0%
AACACTGCACCTCTTTCTCG+TGG + chr2_2:16810269-16810288 Msa0241330:CDS 50.0%
!! GGTCACTTGGGTTGAACATG+TGG + chr2_2:16810611-16810630 Msa0241330:intron 50.0%
CGGAGCTGAAAGCTGGATTA+AGG + chr2_2:16810698-16810717 Msa0241330:CDS 50.0%
!! TGGCTGGCTTGTATCATCGT+CGG - chr2_2:16811073-16811092 None:intergenic 50.0%
AGTCACCACCAGAGACACAT+TGG - chr2_2:16811271-16811290 None:intergenic 50.0%
! TGTGTCTCTGGTGGTGACTT+TGG + chr2_2:16811272-16811291 Msa0241330:intron 50.0%
CATCCCTACTCAGAGGCAAA+TGG + chr2_2:16811744-16811763 Msa0241330:CDS 50.0%
GATTACTCAACGGGAGGTGG+CGG + chr2_2:16807227-16807246 Msa0241330:CDS 55.0%
CGAGGCAGAACGACGTCAAT+TGG + chr2_2:16808294-16808313 Msa0241330:CDS 55.0%
AATTCGCGAGGCCTCACTAG+AGG - chr2_2:16810170-16810189 None:intergenic 55.0%
AGGTGCAGTGTTTGGTCGAG+AGG - chr2_2:16810261-16810280 None:intergenic 55.0%
CTGCACCTCTTTCTCGTGGT+TGG + chr2_2:16810273-16810292 Msa0241330:CDS 55.0%
CGTGGTTGGAAACATCCCTC+TGG + chr2_2:16810287-16810306 Msa0241330:CDS 55.0%
AATGCCTCATGGGGGTTGTC+TGG + chr2_2:16810325-16810344 Msa0241330:CDS 55.0%
CTAACCAGACAACCCCCATG+AGG - chr2_2:16810332-16810351 None:intergenic 55.0%
! CTGGCTTGTATCATCGTCGG+TGG - chr2_2:16811070-16811089 None:intergenic 55.0%
GGAATGCCACCATCCAGACG+AGG + chr2_2:16808276-16808295 Msa0241330:CDS 60.0%
GTTCTGCCTCGTCTGGATGG+TGG - chr2_2:16808285-16808304 None:intergenic 60.0%
GTCGTTCTGCCTCGTCTGGA+TGG - chr2_2:16808288-16808307 None:intergenic 60.0%
TGACGTCGTTCTGCCTCGTC+TGG - chr2_2:16808292-16808311 None:intergenic 60.0%
TGGGGGTCCACCATTTCCTG+TGG + chr2_2:16809051-16809070 Msa0241330:CDS 60.0%
GGTTCGCCAGGAAGTCGAGA+TGG + chr2_2:16810006-16810025 Msa0241330:CDS 60.0%
AGGCAGAGGGAGCCAAATGG+TGG - chr2_2:16811121-16811140 None:intergenic 60.0%
AGCAGGCAGAGGGAGCCAAA+TGG - chr2_2:16811124-16811143 None:intergenic 60.0%
GGTGGTCGGGGTTTGAACCC+TGG + chr2_2:16807643-16807662 Msa0241330:intron 65.0%
! ACGGGAGGTGGCGGTGAGTC+CGG + chr2_2:16807236-16807255 Msa0241330:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 16807224 16812113 16807224 ID=Msa0241330;Name=Msa0241330
chr2_2 mRNA 16807224 16812113 16807224 ID=Msa0241330-mRNA-1;Parent=Msa0241330;Name=Msa0241330-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|10|0|710
chr2_2 exon 16807224 16807345 16807224 ID=Msa0241330-mRNA-1:exon:6973;Parent=Msa0241330-mRNA-1
chr2_2 exon 16808267 16808384 16808267 ID=Msa0241330-mRNA-1:exon:6974;Parent=Msa0241330-mRNA-1
chr2_2 exon 16808941 16809132 16808941 ID=Msa0241330-mRNA-1:exon:6975;Parent=Msa0241330-mRNA-1
chr2_2 exon 16809241 16809711 16809241 ID=Msa0241330-mRNA-1:exon:6976;Parent=Msa0241330-mRNA-1
chr2_2 exon 16809940 16810041 16809940 ID=Msa0241330-mRNA-1:exon:6977;Parent=Msa0241330-mRNA-1
chr2_2 exon 16810140 16810346 16810140 ID=Msa0241330-mRNA-1:exon:6978;Parent=Msa0241330-mRNA-1
chr2_2 exon 16810612 16810792 16810612 ID=Msa0241330-mRNA-1:exon:6979;Parent=Msa0241330-mRNA-1
chr2_2 exon 16810914 16811188 16810914 ID=Msa0241330-mRNA-1:exon:6980;Parent=Msa0241330-mRNA-1
chr2_2 exon 16811508 16811597 16811508 ID=Msa0241330-mRNA-1:exon:6981;Parent=Msa0241330-mRNA-1
chr2_2 exon 16811739 16812113 16811739 ID=Msa0241330-mRNA-1:exon:6982;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16807224 16807345 16807224 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16808267 16808384 16808267 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16808941 16809132 16808941 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16809241 16809711 16809241 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16809940 16810041 16809940 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16810140 16810346 16810140 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16810612 16810792 16810612 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16810914 16811188 16810914 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16811508 16811597 16811508 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
chr2_2 CDS 16811739 16812113 16811739 ID=Msa0241330-mRNA-1:cds;Parent=Msa0241330-mRNA-1
Gene Sequence

>Msa0241330

ATGGATTACTCAACGGGAGGTGGCGGTGAGTCCGGTGATGAAGACATTAGTAACTTTCGAGATGATGGAAACAAACCTTCCTACAAACGTCTTACCTCCGCTCAAACATCCATACTTGAAAATTTCATGAAGGAATGCCACCATCCAGACGAGGCAGAACGACGTCAATTGGCTGTGAAAGTTGGGCTTGAGCCCAAACAAATCAAGTTTTGGTTTCAGAACAAGAGAACTCTGTTGAAGCATCAACATGAACGAGAGAAAAACGGTGCTCTTCGTCGGGAGAATGACAAGATTCGTAACGAAAATCTCAAAATAAAAGAGGTACTGAAAGCCACAATTTGCGAAGCTTGTGGGGGTCCACCATTTCCTGTGGAAGACCATCAACATTTCGTGCAGGAGATGCAGCAAGAAAATGCTCAGCTGAAACAAGAGTGTGAAAAAATGTCTAGCCTTCTTGCAAGCTACATGCAGAAAGAGATAACACTACCGGAGTTTGAGCAAGCTCTTAAGTCTATAAAATCATTTTCACGTGACAGAGAACTTGAAATTCCACCAAACCGAACGGTTTATGAGTGCTCAAATCATGTTCATGGTAATCTAACTATGAGGAGAGGTGTGCTAGGGCTCAACTTAACACAAAACTATGATGCACAAAAGATAACTATGTCTCAAGTTGTAGATGCTGCAATGGATGAATTGGTTAGGCTTGTGAGAGTTGATGAGCCTTTTTGGGTCAAATCTCCAAATACTCAAGATGGGTACACTCTTCATCGCGAAAGTTATGAGCAAGTTTTTCCAAAGAACAATCACTTTAAAGGTGCGTATGTGTGCGAAGAATCTTCCAAATATTCAGGATTGGTGAAGATTAGTGGCATAGATTTGGTTGGCATGTTTCTCGACTCGGTCAAATGGACAAACTTGTTCCCTACAATTGTTACCAAAGCTGAAACTATCAAAGTGTTTGAAATCGGTTCGCCAGGAAGTCGAGATGGAGCTTTATTACTGATGAATGAAGAAATGCATATTTTATCACCTCTAGTGAGGCCTCGCGAATTTAACATCATTCGCTACTGCAGAAAAGTTGATGCTGGTGTATGGGTGATAACTGATGTCTCATTTGACTCCTCTCGACCAAACACTGCACCTCTTTCTCGTGGTTGGAAACATCCCTCTGGATGCATCATTCGTGAAATGCCTCATGGGGGTTGTCTGGTCACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATCCATACACATTACATGTATAGAGATCTTGTTGGCGACTATAATTTATACGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGTGAGAGATCTTTAGGCTCTTATGTTAAAGCAATACCTGTTGAAGAAACCATAGGAGTGATCCAAACACTTGAAGGGAGGAATAGTGTGATAAAGCTTGCTGATAGAATGGTCAAAATGTTTTGTGAATGCTTAACAATGCCTGGTCAAGTGGAGTTTAACCATTTAACTCTTGATAGCATTGGTGGGGTTAGAGTCTCTCTTCGCAATACCACCGACGATGATACAAGCCAGCCAAATGGCACTGTTGTTACTGCTGCTACCACCATTTGGCTCCCTCTGCCTGCTCAGAAAGTTTTTGAATTCCTTAAAGATCCTACAAAGCGATCACAGTGGGATGGTCTTTCTTATGGAAATCCAATGCATGAAATTGCACACATTTCAAATGGACCCTATCATGGCAACTGCATTTCAATTATCAAGTCATTCATCCCTACTCAGAGGCAAATGGTGATTCTACAAGAAAGTTTCACTTCTCCTGTAGGATCATACATTATATATGCTCCAACTGATAGAAAAATTATGGATGTGGCTTTAAGGGGTGAAGACTGTAAAGAGTTACCAATCCTTCCAAATGGTTTTGTAATTTGTTCAAAGAGCCAACCAAATCTTAATGCACCATTTGGAGCATCTAACGGTATTGAAGATGGCTCGTTGTTAACATTGGCAGCCCAAATTCTGAGCACTAGTCCATATGCAGTTGACCAAGTGCTTAATGTGGAAGATGTTACTTATATCAACACCCAATTGGCAGCTACTATTCTAAATGTGAAGGATGCTCTTATGAGGTCTATTTAA
Protein sequence

>Msa0241330

MDYSTGGGGESGDEDISNFRDDGNKPSYKRLTSAQTSILENFMKECHHPDEAERRQLAVKVGLEPKQIKFWFQNKRTLLKHQHEREKNGALRRENDKIRNENLKIKEVLKATICEACGGPPFPVEDHQHFVQEMQQENAQLKQECEKMSSLLASYMQKEITLPEFEQALKSIKSFSRDRELEIPPNRTVYECSNHVHGNLTMRRGVLGLNLTQNYDAQKITMSQVVDAAMDELVRLVRVDEPFWVKSPNTQDGYTLHRESYEQVFPKNNHFKGAYVCEESSKYSGLVKISGIDLVGMFLDSVKWTNLFPTIVTKAETIKVFEIGSPGSRDGALLLMNEEMHILSPLVRPREFNIIRYCRKVDAGVWVITDVSFDSSRPNTAPLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVEDKIHTHYMYRDLVGDYNLYGAESWIKELQRMCERSLGSYVKAIPVEETIGVIQTLEGRNSVIKLADRMVKMFCECLTMPGQVEFNHLTLDSIGGVRVSLRNTTDDDTSQPNGTVVTAATTIWLPLPAQKVFEFLKDPTKRSQWDGLSYGNPMHEIAHISNGPYHGNCISIIKSFIPTQRQMVILQESFTSPVGSYIIYAPTDRKIMDVALRGEDCKELPILPNGFVICSKSQPNLNAPFGASNGIEDGSLLTLAAQILSTSPYAVDQVLNVEDVTYINTQLAATILNVKDALMRSI*