AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241760 MtrunA17_Chr2g0293491 100.000 132 0 0 2 133 163 294 6.24e-96 278
Msa0241760 MtrunA17_Chr4g0051261 90.152 132 13 0 2 133 163 294 3.81e-88 258
Msa0241760 MtrunA17_Chr4g0002001 57.812 128 53 1 2 129 180 306 3.25e-51 164
Msa0241760 MtrunA17_Chr1g0187371 55.469 128 56 1 2 129 185 311 5.39e-51 164
Msa0241760 MtrunA17_Chr8g0377071 51.471 136 56 2 3 129 545 679 1.39e-41 145
Msa0241760 MtrunA17_Chr4g0057791 48.148 135 60 2 3 128 380 513 2.38e-41 143
Msa0241760 MtrunA17_Chr8g0358921 50.781 128 63 0 2 129 211 338 4.24e-41 139
Msa0241760 MtrunA17_Chr3g0122781 44.371 151 59 2 3 129 576 725 1.10e-36 132
Msa0241760 MtrunA17_Chr3g0093571 48.800 125 63 1 3 126 200 324 3.93e-35 126
Msa0241760 MtrunA17_Chr3g0093391 48.000 125 64 1 3 126 198 322 4.18e-35 126
Msa0241760 MtrunA17_Chr3g0130781 45.000 140 61 4 3 127 191 329 1.14e-33 122
Msa0241760 MtrunA17_Chr4g0030151 42.105 133 73 2 3 132 200 331 1.34e-32 117
Msa0241760 MtrunA17_Chr8g0378831 43.411 129 71 1 3 129 194 322 3.28e-32 116
Msa0241760 MtrunA17_Chr3g0102571 42.969 128 72 1 3 129 242 369 7.80e-32 116
Msa0241760 MtrunA17_Chr8g0369451 40.909 132 77 1 3 133 159 290 2.66e-31 115
Msa0241760 MtrunA17_Chr6g0483151 44.000 125 69 1 2 126 171 294 4.45e-31 114
Msa0241760 MtrunA17_Chr7g0248461 39.683 126 74 1 3 126 199 324 1.04e-30 112
Msa0241760 MtrunA17_Chr5g0409421 40.909 132 77 1 3 133 159 290 1.10e-30 114
Msa0241760 MtrunA17_Chr3g0141871 41.085 129 74 1 3 129 194 322 1.25e-29 110
Msa0241760 MtrunA17_Chr4g0045841 39.844 128 76 1 3 129 216 343 2.86e-29 109
Msa0241760 MtrunA17_Chr2g0286421 42.400 125 70 2 3 126 263 386 8.54e-29 109
Msa0241760 MtrunA17_Chr5g0396361 42.400 125 70 2 3 126 301 424 8.56e-29 109
Msa0241760 MtrunA17_Chr3g0131861 41.600 125 71 2 3 126 258 381 8.84e-29 109
Msa0241760 MtrunA17_Chr4g0030231 41.085 129 74 1 3 129 201 329 1.41e-28 107
Msa0241760 MtrunA17_Chr8g0387401 40.310 129 75 1 3 129 213 341 2.08e-28 107
Msa0241760 MtrunA17_Chr6g0486031 39.062 128 76 2 3 128 275 402 2.54e-28 107
Msa0241760 MtrunA17_Chr4g0061141 42.857 126 70 2 3 127 266 390 3.29e-28 108
Msa0241760 MtrunA17_Chr8g0348481 38.095 126 76 1 3 126 198 323 3.80e-28 105
Msa0241760 MtrunA17_Chr4g0040141 40.945 127 69 3 3 126 290 413 3.90e-28 107
Msa0241760 MtrunA17_Chr2g0317501 40.800 125 72 2 3 126 295 418 4.98e-28 107
Msa0241760 MtrunA17_Chr8g0390341 38.281 128 77 2 3 128 288 415 6.01e-28 106
Msa0241760 MtrunA17_Chr8g0360761 46.281 121 49 2 8 127 80 185 9.92e-28 101
Msa0241760 MtrunA17_Chr5g0397261 39.535 129 76 1 3 129 202 330 1.77e-27 104
Msa0241760 MtrunA17_Chr6g0453711 40.769 130 75 2 3 131 271 399 2.18e-27 105
Msa0241760 MtrunA17_Chr8g0385971 42.400 125 70 2 3 126 251 374 8.22e-27 103
Msa0241760 MtrunA17_Chr7g0218071 42.857 126 69 3 3 126 281 405 8.67e-27 103
Msa0241760 MtrunA17_Chr1g0191221 39.200 125 74 2 3 126 283 406 2.79e-26 102
Msa0241760 MtrunA17_Chr4g0066691 40.000 125 73 2 3 126 265 388 3.14e-26 102
Msa0241760 MtrunA17_Chr2g0324461 42.188 128 66 3 3 126 302 425 4.13e-26 102
Msa0241760 MtrunA17_Chr7g0273601 38.400 125 75 2 3 126 268 391 7.82e-26 101
Msa0241760 MtrunA17_Chr3g0099951 36.434 129 79 2 2 129 173 299 3.78e-25 98.6
Msa0241760 MtrunA17_Chr8g0339221 38.806 134 78 2 3 133 159 291 3.06e-24 96.3
Msa0241760 MtrunA17_Chr3g0102601 37.705 122 75 1 9 129 86 207 3.11e-24 93.6
Msa0241760 MtrunA17_Chr7g0246591 36.154 130 79 3 3 130 302 429 4.82e-24 95.9
Msa0241760 MtrunA17_Chr1g0201571 42.520 127 65 2 3 126 287 408 1.60e-23 94.7
Msa0241760 MtrunA17_Chr8g0350311 32.857 140 70 2 3 130 300 427 2.58e-22 90.9
Msa0241760 MtrunA17_Chr2g0320011 32.308 130 84 3 3 130 249 376 6.99e-22 89.7
Msa0241760 MtrunA17_Chr1g0193081 33.846 130 82 3 3 130 236 363 1.14e-21 89.0
Msa0241760 MtrunA17_Chr2g0284091 32.308 130 84 3 3 130 201 328 1.38e-21 88.6
Msa0241760 MtrunA17_Chr8g0383451 44.531 128 63 3 3 127 159 281 1.51e-21 89.0
Msa0241760 MtrunA17_Chr7g0270371 31.538 130 85 3 3 130 236 363 3.48e-21 87.4
Msa0241760 MtrunA17_Chr2g0277011 30.657 137 77 2 3 130 251 378 9.31e-21 86.3
Msa0241760 MtrunA17_Chr1g0194201 31.538 130 85 3 3 130 236 363 1.05e-20 86.3
Msa0241760 MtrunA17_Chr4g0065851 36.641 131 78 3 3 129 190 319 2.00e-19 82.8
Msa0241760 MtrunA17_Chr4g0030241 53.968 63 29 0 3 65 62 124 2.15e-19 79.3
Msa0241760 MtrunA17_Chr8g0392811 35.938 128 77 3 3 126 282 408 4.90e-19 82.0
Msa0241760 MtrunA17_Chr2g0287271 37.313 134 79 3 3 132 190 322 1.23e-18 80.9
Msa0241760 MtrunA17_Chr5g0443351 39.695 131 74 3 3 129 187 316 1.36e-18 80.5
Msa0241760 MtrunA17_Chr8g0359091 39.695 131 74 3 3 129 191 320 1.07e-17 78.2
Msa0241760 MtrunA17_Chr3g0096631 38.168 131 76 3 3 129 190 319 1.81e-16 74.7
Msa0241760 MtrunA17_Chr4g0053821 29.496 139 89 3 1 130 240 378 4.44e-16 73.2
Msa0241760 MtrunA17_Chr6g0482681 36.567 134 80 3 3 132 254 386 5.57e-16 73.2
Msa0241760 MtrunA17_Chr8g0378871 33.673 98 63 1 31 126 6 103 1.78e-15 68.6
Msa0241760 MtrunA17_Chr4g0053951 30.714 140 86 4 1 130 271 409 4.44e-15 70.5
Msa0241760 MtrunA17_Chr5g0401371 28.571 140 89 4 1 130 266 404 1.39e-14 68.9
Msa0241760 MtrunA17_Chr3g0139371 31.724 145 78 4 3 127 256 399 5.57e-14 67.4
Msa0241760 MtrunA17_Chr2g0314321 34.211 152 70 4 3 129 190 336 5.94e-14 67.4
Msa0241760 MtrunA17_Chr3g0116701 32.653 147 72 6 3 126 277 419 7.40e-12 61.2
Msa0241760 MtrunA17_Chr8g0392821 31.429 105 58 2 20 124 47 137 2.11e-11 58.5
Msa0241760 MtrunA17_Chr8g0369241 51.852 54 25 1 7 60 307 359 2.36e-11 60.1
Msa0241760 MtrunA17_Chr4g0058241 31.973 147 73 6 3 126 281 423 4.27e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241760 AT3G48750.1 75.758 132 32 0 2 133 163 294 1.98e-73 221
Msa0241760 AT2G38620.4 58.594 128 52 1 2 129 118 244 7.80e-54 169
Msa0241760 AT1G20930.1 58.594 128 52 1 2 129 183 309 8.35e-54 171
Msa0241760 AT2G38620.2 58.594 128 52 1 2 129 180 306 3.00e-53 170
Msa0241760 AT3G54180.1 58.594 128 52 1 2 129 178 304 8.60e-53 169
Msa0241760 AT1G76540.1 54.688 128 57 1 2 129 181 307 4.83e-51 164
Msa0241760 AT5G63370.2 51.111 135 58 1 3 129 328 462 2.12e-42 145
Msa0241760 AT5G63370.3 51.111 135 58 1 3 129 328 462 2.12e-42 145
Msa0241760 AT5G63370.7 51.111 135 58 1 3 129 462 596 1.01e-41 145
Msa0241760 AT5G63370.8 51.111 135 58 1 3 129 462 596 1.01e-41 145
Msa0241760 AT5G63370.4 51.111 135 58 1 3 129 462 596 1.01e-41 145
Msa0241760 AT5G63370.6 51.111 135 58 1 3 129 462 596 1.01e-41 145
Msa0241760 AT5G63370.1 51.111 135 58 1 3 129 462 596 1.01e-41 145
Msa0241760 AT1G67580.1 50.000 136 58 2 3 129 566 700 3.94e-40 142
Msa0241760 AT1G67580.2 50.000 136 58 2 3 129 566 700 3.94e-40 142
Msa0241760 AT1G18040.1 46.400 125 66 1 2 126 169 292 4.68e-36 127
Msa0241760 AT5G63610.1 47.482 139 59 3 3 127 196 334 1.40e-35 127
Msa0241760 AT1G66750.1 48.000 125 64 1 2 126 170 293 2.49e-35 124
Msa0241760 AT1G73690.1 44.800 125 68 1 2 126 168 291 8.08e-35 124
Msa0241760 AT5G10270.1 45.600 125 67 1 3 126 201 325 2.23e-33 122
Msa0241760 AT5G64960.2 44.000 125 69 1 3 126 148 272 2.77e-33 121
Msa0241760 AT5G64960.1 44.000 125 69 1 3 126 201 325 3.64e-33 121
Msa0241760 AT5G63370.9 60.976 82 32 0 3 84 328 409 7.48e-33 119
Msa0241760 AT3G45640.1 43.077 130 70 2 3 129 199 327 1.94e-32 117
Msa0241760 AT5G63370.5 60.976 82 32 0 3 84 462 543 2.12e-32 119
Msa0241760 AT5G63370.10 60.976 82 32 0 3 84 462 543 2.12e-32 119
Msa0241760 AT3G59790.1 41.985 131 72 2 3 129 221 351 4.31e-32 117
Msa0241760 AT4G19110.3 39.394 132 79 1 3 133 103 234 9.38e-30 111
Msa0241760 AT4G19110.2 39.394 132 79 1 3 133 159 290 1.44e-29 111
Msa0241760 AT4G19110.1 39.394 132 79 1 3 133 159 290 1.45e-29 111
Msa0241760 AT5G45430.1 39.394 132 79 1 3 133 159 290 2.28e-29 111
Msa0241760 AT4G13020.7 44.800 125 68 1 3 126 159 283 2.56e-29 109
Msa0241760 AT4G13020.8 44.800 125 68 1 3 126 168 292 2.89e-29 109
Msa0241760 AT5G45430.2 39.394 132 79 1 3 133 159 290 3.27e-29 110
Msa0241760 AT4G13020.6 44.800 125 68 1 3 126 159 283 3.42e-29 109
Msa0241760 AT4G13020.4 44.800 125 68 1 3 126 159 283 3.45e-29 109
Msa0241760 AT4G13020.2 44.800 125 68 1 3 126 167 291 4.61e-29 109
Msa0241760 AT4G13020.3 44.800 125 68 1 3 126 167 291 4.65e-29 109
Msa0241760 AT4G13020.1 44.800 125 68 1 3 126 159 283 4.88e-29 109
Msa0241760 AT1G09600.1 42.400 125 70 2 3 126 324 447 5.20e-29 110
Msa0241760 AT4G13020.5 44.800 125 68 1 3 126 168 292 5.31e-29 109
Msa0241760 AT4G10010.1 44.000 125 68 2 3 126 137 260 6.21e-29 109
Msa0241760 AT3G01085.3 44.800 125 68 1 3 126 276 400 7.73e-29 110
Msa0241760 AT3G01085.1 44.800 125 68 1 3 126 276 400 8.25e-29 110
Msa0241760 AT3G01085.2 44.800 125 68 1 3 126 276 400 8.25e-29 110
Msa0241760 AT4G11330.1 40.476 126 73 1 3 126 204 329 1.80e-28 107
Msa0241760 AT1G03740.1 40.458 131 74 2 3 131 374 502 1.82e-28 109
Msa0241760 AT4G10010.2 44.000 125 68 2 3 126 317 440 1.89e-28 108
Msa0241760 AT1G03740.2 39.850 133 76 2 2 132 373 503 2.13e-28 108
Msa0241760 AT5G39420.1 44.000 125 68 2 3 126 266 389 3.21e-28 108
Msa0241760 AT5G44290.7 41.221 131 75 2 3 132 298 427 4.77e-28 107
Msa0241760 AT5G44290.2 41.538 130 74 2 3 131 298 426 4.83e-28 107
Msa0241760 AT5G44290.5 41.538 130 74 2 3 131 298 426 4.83e-28 107
Msa0241760 AT5G44290.4 41.538 130 74 2 3 131 298 426 4.83e-28 107
Msa0241760 AT5G44290.1 41.538 130 74 2 3 131 298 426 4.83e-28 107
Msa0241760 AT5G44290.3 41.538 130 74 2 3 131 298 426 4.83e-28 107
Msa0241760 AT4G01370.1 38.889 126 75 1 3 126 204 329 5.20e-28 106
Msa0241760 AT5G44290.6 41.221 131 75 2 3 132 298 427 5.59e-28 107
Msa0241760 AT1G71530.1 42.400 125 70 2 3 126 308 431 7.71e-28 107
Msa0241760 AT2G43790.1 39.062 128 77 1 3 129 224 351 1.04e-27 105
Msa0241760 AT1G59580.2 40.476 126 73 1 3 126 194 319 1.08e-27 105
Msa0241760 AT1G59580.1 40.476 126 73 1 3 126 194 319 1.08e-27 105
Msa0241760 AT1G01560.2 38.889 126 75 1 3 126 201 326 1.17e-27 105
Msa0241760 AT1G71530.2 42.400 125 70 2 3 126 308 431 1.21e-27 106
Msa0241760 AT4G28980.3 39.844 128 75 2 3 128 293 420 1.39e-27 105
Msa0241760 AT4G28980.1 39.844 128 75 2 3 128 293 420 1.39e-27 105
Msa0241760 AT4G28980.2 39.844 128 75 2 3 128 293 420 1.39e-27 105
Msa0241760 AT1G10210.2 40.476 126 73 1 3 126 194 319 2.03e-27 104
Msa0241760 AT1G10210.3 40.476 126 73 1 3 126 194 319 2.03e-27 104
Msa0241760 AT1G10210.1 40.476 126 73 1 3 126 194 319 2.03e-27 104
Msa0241760 AT2G18170.1 41.270 126 72 1 3 126 194 319 2.91e-27 103
Msa0241760 AT1G54610.1 40.945 127 69 3 3 126 279 402 8.73e-27 104
Msa0241760 AT1G54610.3 40.945 127 69 3 3 126 279 402 8.73e-27 104
Msa0241760 AT1G54610.2 40.945 127 69 3 3 126 279 402 8.73e-27 104
Msa0241760 AT2G38620.3 74.138 58 15 0 2 59 180 237 9.40e-27 100
Msa0241760 AT2G38620.1 74.138 58 15 0 2 59 180 237 9.40e-27 100
Msa0241760 AT1G01560.3 38.655 119 71 1 3 119 201 319 1.00e-26 102
Msa0241760 AT5G50860.2 40.800 125 72 2 3 126 275 398 1.02e-26 103
Msa0241760 AT1G74330.2 40.769 130 75 2 3 131 284 412 1.03e-26 104
Msa0241760 AT1G74330.1 40.769 130 75 2 3 131 284 412 1.07e-26 104
Msa0241760 AT1G74330.3 40.769 130 75 2 3 131 284 412 1.28e-26 103
Msa0241760 AT5G50860.1 40.800 125 72 2 3 126 275 398 1.35e-26 103
Msa0241760 AT4G36450.1 39.706 136 66 2 3 129 191 319 1.47e-26 102
Msa0241760 AT1G71530.3 42.276 123 69 2 3 124 308 429 2.01e-26 102
Msa0241760 AT2G46070.3 37.302 126 77 1 3 126 236 361 3.67e-26 101
Msa0241760 AT2G46070.1 37.302 126 77 1 3 126 202 327 3.84e-26 100
Msa0241760 AT1G07880.2 39.683 126 74 1 3 126 194 319 4.43e-26 100
Msa0241760 AT1G53050.2 43.651 126 67 3 3 126 295 418 5.61e-26 102
Msa0241760 AT1G53050.1 43.651 126 67 3 3 126 295 418 5.61e-26 102
Msa0241760 AT4G22940.1 41.085 129 70 3 2 127 264 389 5.73e-26 101
Msa0241760 AT4G22940.2 41.085 129 70 3 2 127 264 389 1.05e-25 101
Msa0241760 AT1G18670.1 38.636 132 77 2 3 131 293 423 7.87e-25 99.0
Msa0241760 AT1G18670.3 38.636 132 77 2 3 131 293 423 8.05e-25 99.0
Msa0241760 AT1G18670.2 38.636 132 77 2 3 131 293 423 1.05e-24 98.6
Msa0241760 AT1G33770.1 44.800 125 67 2 3 126 302 425 2.61e-24 97.4
Msa0241760 AT2G46070.2 37.931 116 70 1 3 116 202 317 4.12e-24 94.7
Msa0241760 AT3G61160.4 34.615 130 81 3 3 130 263 390 5.39e-23 92.8
Msa0241760 AT3G61160.2 34.615 130 81 3 3 130 270 397 5.66e-23 93.2
Msa0241760 AT3G61160.1 34.615 130 81 3 3 130 263 390 6.65e-23 92.8
Msa0241760 AT1G57700.1 41.985 131 72 3 3 131 307 435 9.25e-23 92.8
Msa0241760 AT5G14640.1 33.077 130 83 3 3 130 235 362 5.08e-22 90.1
Msa0241760 AT5G14640.2 33.077 130 83 3 3 130 235 362 5.08e-22 90.1
Msa0241760 AT4G00720.1 34.615 130 81 3 3 130 299 426 1.06e-21 89.7
Msa0241760 AT1G06390.2 32.308 130 84 3 3 130 231 358 6.01e-21 87.4
Msa0241760 AT1G06390.1 32.308 130 84 3 3 130 231 358 6.01e-21 87.4
Msa0241760 AT3G05840.2 32.308 130 84 3 3 130 234 361 6.07e-21 87.4
Msa0241760 AT3G05840.1 32.308 130 84 3 3 130 234 361 6.07e-21 87.4
Msa0241760 AT4G18710.1 31.538 130 85 3 3 130 201 328 6.32e-21 87.0
Msa0241760 AT2G30980.1 32.308 130 84 3 3 130 233 360 7.24e-21 87.0
Msa0241760 AT1G09840.11 34.615 130 81 3 3 130 117 244 8.33e-21 85.5
Msa0241760 AT1G57870.3 31.387 137 76 2 3 130 243 370 8.90e-21 87.0
Msa0241760 AT1G57870.1 31.387 137 76 2 3 130 243 370 1.03e-20 86.7
Msa0241760 AT1G57870.4 31.387 137 76 2 3 130 243 370 1.03e-20 86.7
Msa0241760 AT1G57870.2 31.387 137 76 2 3 130 243 370 1.03e-20 86.7
Msa0241760 AT5G26751.1 32.308 130 84 3 3 130 230 357 1.54e-20 86.3
Msa0241760 AT1G09840.3 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.7 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.10 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.6 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.4 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.1 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.9 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.5 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.8 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT1G09840.2 31.387 137 76 2 3 130 244 371 3.47e-20 85.1
Msa0241760 AT3G61160.5 35.043 117 72 3 3 117 263 377 7.27e-20 84.0
Msa0241760 AT2G01450.3 36.567 134 80 3 3 132 181 313 1.07e-19 84.0
Msa0241760 AT2G01450.1 36.567 134 80 3 3 132 181 313 1.07e-19 84.0
Msa0241760 AT2G01450.2 36.567 134 80 3 3 132 181 313 1.07e-19 84.0
Msa0241760 AT2G01450.4 36.567 134 80 3 3 132 181 313 1.07e-19 84.0
Msa0241760 AT5G19010.1 36.641 131 78 3 3 129 190 319 1.40e-18 80.9
Msa0241760 AT2G42880.2 39.695 131 74 3 3 129 190 319 1.69e-18 80.5
Msa0241760 AT2G42880.1 39.695 131 74 3 3 129 190 319 1.70e-18 80.9
Msa0241760 AT3G05050.3 49.231 65 33 0 3 67 299 363 4.64e-18 79.3
Msa0241760 AT3G05050.2 49.231 65 33 0 3 67 299 363 4.64e-18 79.3
Msa0241760 AT3G05050.1 49.231 65 33 0 3 67 299 363 4.64e-18 79.3
Msa0241760 AT3G14720.2 41.538 130 69 4 3 127 190 317 5.68e-18 79.0
Msa0241760 AT3G14720.3 41.538 130 69 4 3 127 190 317 5.68e-18 79.0
Msa0241760 AT2G23080.1 31.655 139 86 3 1 130 185 323 1.12e-17 77.8
Msa0241760 AT3G14720.1 41.538 130 69 4 3 127 190 317 1.31e-17 78.2
Msa0241760 AT4G18710.2 37.975 79 45 1 3 77 195 273 1.38e-17 76.6
Msa0241760 AT1G73670.1 36.296 135 73 4 3 129 255 384 1.66e-17 77.8
Msa0241760 AT3G61160.3 38.824 85 49 2 3 86 263 345 2.23e-17 77.0
Msa0241760 AT3G61160.6 38.824 85 49 2 3 86 270 352 2.49e-17 77.0
Msa0241760 AT5G67380.2 28.777 139 90 3 1 130 228 366 3.19e-16 73.9
Msa0241760 AT1G53510.1 39.259 135 69 4 3 129 190 319 8.89e-16 72.8
Msa0241760 AT3G18040.3 36.719 128 76 3 3 126 297 423 1.43e-15 72.4
Msa0241760 AT3G18040.4 36.719 128 76 3 3 126 297 423 1.80e-15 72.0
Msa0241760 AT5G67380.1 28.777 139 90 3 1 130 261 399 4.36e-15 70.9
Msa0241760 AT2G23070.1 31.915 141 83 5 1 130 283 421 9.47e-15 70.1
Msa0241760 AT1G07880.1 56.000 50 22 0 3 52 194 243 2.03e-14 67.8
Msa0241760 AT3G18040.2 36.719 128 76 3 3 126 100 226 2.20e-14 68.9
Msa0241760 AT3G18040.5 36.719 128 76 3 3 126 183 309 2.58e-14 68.6
Msa0241760 AT3G18040.1 36.719 128 76 3 3 126 188 314 2.66e-14 68.6
Msa0241760 AT1G01560.4 54.000 50 23 0 3 52 201 250 5.64e-14 67.0
Msa0241760 AT1G01560.1 54.000 50 23 0 3 52 201 250 5.64e-14 67.0
Msa0241760 AT3G50000.1 28.058 139 91 3 1 130 255 393 6.46e-14 67.4
Msa0241760 AT4G24740.10 31.757 148 72 6 3 126 75 217 1.12e-13 65.5
Msa0241760 AT4G24740.8 31.757 148 72 6 3 126 75 217 1.12e-13 65.5
Msa0241760 AT4G24740.6 31.757 148 72 6 3 126 178 320 2.38e-13 65.5
Msa0241760 AT4G24740.9 31.757 148 72 6 3 126 178 320 2.38e-13 65.5
Msa0241760 AT4G24740.2 31.757 148 72 6 3 126 178 320 2.38e-13 65.5
Msa0241760 AT4G24740.7 31.757 148 72 6 3 126 243 385 3.76e-13 65.5
Msa0241760 AT1G18150.3 35.878 131 79 3 3 129 269 398 3.79e-13 65.5
Msa0241760 AT1G18150.2 35.878 131 79 3 3 129 269 398 3.79e-13 65.5
Msa0241760 AT1G18150.1 35.878 131 79 3 3 129 269 398 3.79e-13 65.5
Msa0241760 AT4G24740.1 31.757 148 72 6 3 126 281 423 4.38e-13 65.1
Msa0241760 AT3G53570.1 32.432 148 72 6 3 126 300 443 6.56e-13 64.7
Msa0241760 AT3G53570.4 32.432 148 72 6 3 126 300 443 6.56e-13 64.7
Msa0241760 AT3G53570.2 32.432 148 72 6 3 126 300 443 6.56e-13 64.7
Msa0241760 AT3G53570.3 32.432 148 72 6 3 126 286 429 7.53e-13 64.3
Msa0241760 AT3G53570.5 32.432 148 72 6 3 126 286 429 7.53e-13 64.3
Msa0241760 AT1G71530.4 52.083 48 23 0 2 49 307 354 1.36e-12 63.5
Msa0241760 AT5G35980.2 50.847 59 28 1 7 65 289 346 2.99e-12 62.8
Msa0241760 AT5G35980.3 50.847 59 28 1 7 65 254 311 4.43e-12 62.4
Msa0241760 AT5G35980.1 50.847 59 28 1 7 65 289 346 4.76e-12 62.4
Msa0241760 AT4G32660.4 30.822 146 79 5 3 127 141 285 2.22e-11 60.1
Msa0241760 AT4G01595.1 50.980 51 25 0 20 70 20 70 2.36e-11 57.8
Msa0241760 AT4G32660.1 30.822 146 79 5 3 127 253 397 3.30e-11 59.7
Msa0241760 AT4G32660.3 30.822 146 79 5 3 127 245 389 3.44e-11 59.7

Find 54 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATATGTGCAGAATTTA+TGG 0.082765 2_2:-17720592 Msa0241760:three_prime_UTR
TACCATTAAGATATGGAATT+AGG 0.166785 2_2:+17720626 None:intergenic
ACCCTAATTCCATATCTTAA+TGG 0.213240 2_2:-17720628 Msa0241760:exon
ATGAGTTATTTAAAATATTC+AGG 0.233768 2_2:-17722532 Msa0241760:intron
ACCATTAAGATATGGAATTA+GGG 0.301458 2_2:+17720627 None:intergenic
CGAGATCCAAGCAATATTTC+CGG 0.312083 2_2:+17722650 None:intergenic
AGACATTTACTTACCTTAGA+TGG 0.318673 2_2:+17721706 None:intergenic
AGACCAGCTGGCTCAAGATT+TGG 0.324310 2_2:+17721595 None:intergenic
GGAAATGTTGATTTAAAATC+AGG 0.327943 2_2:+17721736 None:intergenic
CCCACTGACCAAACATCAAC+TGG 0.335027 2_2:+17722614 None:intergenic
CCTGGCCATGTATCTTCATT+TGG 0.339457 2_2:+17721772 None:intergenic
GTTGAATCTGAAATATTTGT+AGG 0.346235 2_2:+17720487 None:intergenic
ATTTCCCAGGTGGCCATCTA+AGG 0.351155 2_2:-17721719 Msa0241760:intron
GCTCCTGGCAGTAATTCTTT+TGG 0.360943 2_2:+17720689 None:intergenic
ACACCTTTACCATTAAGATA+TGG 0.374572 2_2:+17720619 None:intergenic
TCTTGCAATAATATACGTAT+TGG 0.380187 2_2:+17720363 None:intergenic
ATTCTACCCCAGTTGATGTT+TGG 0.400330 2_2:-17722622 Msa0241760:CDS
ATTAAATATGACAGGATCCT+AGG 0.420576 2_2:+17720517 None:intergenic
ATTCCAGAGCATGCTTTGCT+TGG 0.422112 2_2:-17720718 Msa0241760:intron
TTCATGCTCCACAGCGCTCC+TGG 0.444473 2_2:+17720674 None:intergenic
TTTAAATAACTCATCAATCT+CGG 0.469825 2_2:+17722541 None:intergenic
CCAGTTGATGTTTGGTCAGT+GGG 0.471352 2_2:-17722614 Msa0241760:CDS
TACACTGTGGTACCGAGCTC+CGG 0.471861 2_2:-17722669 Msa0241760:CDS
AATCGGCGACCTCTATTCCC+TGG 0.474228 2_2:-17722569 Msa0241760:CDS
ATTCCATATCTTAATGGTAA+AGG 0.484447 2_2:-17720622 Msa0241760:three_prime_UTR
ATCGGCGACCTCTATTCCCT+GGG 0.499404 2_2:-17722568 Msa0241760:CDS
AAGTCTGAATGGCAATATAC+AGG 0.502485 2_2:-17720432 Msa0241760:three_prime_UTR
TCAGGCAATGAAGTTACTCC+TGG 0.506307 2_2:+17721754 None:intergenic
CCCAGTTGATGTTTGGTCAG+TGG 0.508697 2_2:-17722615 Msa0241760:CDS
GATTTGGAACCACGGTTGCT+AGG 0.511473 2_2:+17721611 None:intergenic
CGAGCTCCGGAAATATTGCT+TGG 0.517006 2_2:-17722656 Msa0241760:CDS
GACAAAATATTAAATATGAC+AGG 0.519656 2_2:+17720509 None:intergenic
TCATCAATCTCGGAATCCCC+AGG 0.521762 2_2:+17722551 None:intergenic
GTTCCAAATCTTGAGCCAGC+TGG 0.530061 2_2:-17721598 Msa0241760:CDS
GGGATGTATATTTGCAGAGA+TGG 0.536491 2_2:-17722594 Msa0241760:CDS
CCACCAAAAGAATTACTGCC+AGG 0.543217 2_2:-17720692 Msa0241760:CDS
CCAAATGAAGATACATGGCC+AGG 0.550637 2_2:-17721772 Msa0241760:CDS
TTAAGAAGATCAAGACCAGC+TGG 0.550908 2_2:+17721583 None:intergenic
TCGGAATCCCCAGGGAATAG+AGG 0.553263 2_2:+17722560 None:intergenic
TATTTGCAGAGATGGCAAAT+CGG 0.561219 2_2:-17722586 Msa0241760:CDS
GCTACTTTCTTCAAAGACCT+AGG 0.572462 2_2:-17720534 Msa0241760:three_prime_UTR
CAAGCAATATTTCCGGAGCT+CGG 0.578128 2_2:+17722657 None:intergenic
CCACTGACCAAACATCAACT+GGG 0.597741 2_2:+17722615 None:intergenic
CTTACCTTAGATGGCCACCT+GGG 0.599601 2_2:+17721715 None:intergenic
ACTTACCTTAGATGGCCACC+TGG 0.622989 2_2:+17721714 None:intergenic
GTACACCAAATGAAGATACA+TGG 0.634052 2_2:-17721777 Msa0241760:CDS
TTAAATCAACATTTCCCAGG+TGG 0.647469 2_2:-17721729 Msa0241760:CDS
CATCAATCTCGGAATCCCCA+GGG 0.652311 2_2:+17722552 None:intergenic
AATTACTGCCAGGAGCGCTG+TGG 0.660367 2_2:-17720682 Msa0241760:CDS
TTTGCAGGACCTAGCAACCG+TGG 0.665321 2_2:-17721620 Msa0241760:intron
TGGCTCAAGATTTGGAACCA+CGG 0.688247 2_2:+17721603 None:intergenic
CACTGACCAAACATCAACTG+GGG 0.711534 2_2:+17722616 None:intergenic
GTTTGTAGGTAGTTACACTG+TGG 0.718192 2_2:-17722682 Msa0241760:intron
TCGGCGACCTCTATTCCCTG+GGG 0.729622 2_2:-17722567 Msa0241760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGAAAGAAAATTTAA+TGG + chr2_2:17722619-17722638 None:intergenic 10.0%
!!! TTAAATTTTCTTTCTTTTTT+TGG - chr2_2:17722619-17722638 Msa0241760:CDS 10.0%
!!! ATGAGTTATTTAAAATATTC+AGG - chr2_2:17721233-17721252 Msa0241760:intron 15.0%
!!! TTTTGACTTTAATATTTACA+AGG - chr2_2:17721329-17721348 Msa0241760:intron 15.0%
!!! TTTGACTTTAATATTTACAA+GGG - chr2_2:17721330-17721349 Msa0241760:intron 15.0%
!!! TTGTTATTCTTATTTATAAG+TGG - chr2_2:17721391-17721410 Msa0241760:intron 15.0%
!! AATTGAATTGTTGAATAAAT+TGG - chr2_2:17721476-17721495 Msa0241760:intron 15.0%
!! TTGTTAAATAGATTTGAAAA+CGG - chr2_2:17721859-17721878 Msa0241760:intron 15.0%
!! GTTAAAATATTAGAGTAATA+AGG + chr2_2:17722113-17722132 None:intergenic 15.0%
!!! GATGAAATATTATTTTTCTT+TGG - chr2_2:17722221-17722240 Msa0241760:intron 15.0%
!!! AGTTTATTTTGTTCTTAATT+AGG - chr2_2:17722349-17722368 Msa0241760:intron 15.0%
!! ATATATTGATAAATATTGGA+TGG - chr2_2:17722435-17722454 Msa0241760:intron 15.0%
!!! GGTACTTTTTTTTTTTTTTA+AGG - chr2_2:17722492-17722511 Msa0241760:intron 15.0%
!! TTTCTTAATAGAAATAACAA+GGG - chr2_2:17722574-17722593 Msa0241760:CDS 15.0%
!! TTTAAATAACTCATCAATCT+CGG + chr2_2:17721227-17721246 None:intergenic 20.0%
!!! GTGAATATTTTTATTTCCAT+AGG - chr2_2:17721255-17721274 Msa0241760:intron 20.0%
!!! AACAAATTTTATATGTCAAC+TGG + chr2_2:17721844-17721863 None:intergenic 20.0%
!! TGTTAAATAGATTTGAAAAC+GGG - chr2_2:17721860-17721879 Msa0241760:intron 20.0%
!!! TTCTTTTTATGAAGAATCTT+GGG - chr2_2:17721966-17721985 Msa0241760:intron 20.0%
!!! TTATTTTGTTCTTAATTAGG+AGG - chr2_2:17722352-17722371 Msa0241760:intron 20.0%
!!! TTTTTTTAAGGAAGAAAACA+TGG - chr2_2:17722504-17722523 Msa0241760:intron 20.0%
!! GTTTCTTAATAGAAATAACA+AGG - chr2_2:17722573-17722592 Msa0241760:CDS 20.0%
!!! CTATTTCATTATTTGATAAC+TGG + chr2_2:17722864-17722883 None:intergenic 20.0%
!! GAGGATTAAAATTAATACAT+GGG + chr2_2:17722889-17722908 None:intergenic 20.0%
!! AGAGGATTAAAATTAATACA+TGG + chr2_2:17722890-17722909 None:intergenic 20.0%
!! CAATTTCCATTAAATTTCTT+TGG - chr2_2:17722992-17723011 Msa0241760:intron 20.0%
!! GACAAAATATTAAATATGAC+AGG + chr2_2:17723259-17723278 None:intergenic 20.0%
! GATAAATACATATGTTCTCT+AGG + chr2_2:17720939-17720958 None:intergenic 25.0%
! AAATAAACTAAGAGCAGATT+AGG - chr2_2:17720978-17720997 Msa0241760:intron 25.0%
! AGTTGTTATCTTTAGTGTTA+TGG - chr2_2:17721661-17721680 Msa0241760:intron 25.0%
! AACTGGAAAATCTAAATTCA+TGG + chr2_2:17721827-17721846 None:intergenic 25.0%
! ACAACGCGTAAATATATTAT+AGG + chr2_2:17721947-17721966 None:intergenic 25.0%
!! GTTCTTTTTATGAAGAATCT+TGG - chr2_2:17721965-17721984 Msa0241760:intron 25.0%
!!! GGAAATGTTGATTTAAAATC+AGG + chr2_2:17722032-17722051 None:intergenic 25.0%
!! ATTTTAAATCAACATTTCCC+AGG - chr2_2:17722033-17722052 Msa0241760:intron 25.0%
! TGCTTCTAAATATATTTCTC+TGG + chr2_2:17722412-17722431 None:intergenic 25.0%
! AAGAAAGAAAATTTAATGGC+TGG + chr2_2:17722615-17722634 None:intergenic 25.0%
! TTCAATGCAAAAGCAATTAA+AGG - chr2_2:17722708-17722727 Msa0241760:intron 25.0%
! TCAATGCAAAAGCAATTAAA+GGG - chr2_2:17722709-17722728 Msa0241760:intron 25.0%
! ACCATTAAGATATGGAATTA+GGG + chr2_2:17723141-17723160 None:intergenic 25.0%
! TACCATTAAGATATGGAATT+AGG + chr2_2:17723142-17723161 None:intergenic 25.0%
! ATTCCATATCTTAATGGTAA+AGG - chr2_2:17723143-17723162 Msa0241760:intron 25.0%
!! GTTGAATCTGAAATATTTGT+AGG + chr2_2:17723281-17723300 None:intergenic 25.0%
! ATAGCATATAGCCTTTGTTT+CGG - chr2_2:17720641-17720660 Msa0241760:exon 30.0%
GGAAATAAACTCAAGTCATT+TGG + chr2_2:17720798-17720817 None:intergenic 30.0%
TAGATACAAGAATTAGTGAG+GGG + chr2_2:17720868-17720887 None:intergenic 30.0%
CTAGATACAAGAATTAGTGA+GGG + chr2_2:17720869-17720888 None:intergenic 30.0%
GGAGTACATATAAAATCTTG+CGG - chr2_2:17720999-17721018 Msa0241760:intron 30.0%
ACATATAAAATCTTGCGGAA+AGG - chr2_2:17721004-17721023 Msa0241760:intron 30.0%
! TGTCATTGATGATTGTTTGT+AGG - chr2_2:17721069-17721088 Msa0241760:intron 30.0%
TTCCATGTTGATACATTTGA+TGG - chr2_2:17721422-17721441 Msa0241760:intron 30.0%
GAATTGTTGAATAAATTGGC+TGG - chr2_2:17721480-17721499 Msa0241760:intron 30.0%
! GCTTGTAGTTACTCAATTTT+GGG + chr2_2:17721577-17721596 None:intergenic 30.0%
! AGCTTGTAGTTACTCAATTT+TGG + chr2_2:17721578-17721597 None:intergenic 30.0%
CAATAACCATACTTTCTCTA+TGG + chr2_2:17721609-17721628 None:intergenic 30.0%
AATCTCACTGAAAAACACTT+CGG + chr2_2:17721693-17721712 None:intergenic 30.0%
ATAGCAAAGGAGTTCTTAAT+GGG - chr2_2:17721771-17721790 Msa0241760:CDS 30.0%
AATACTCTTTGCTTTCTAAC+AGG - chr2_2:17721894-17721913 Msa0241760:intron 30.0%
ATACTCTTTGCTTTCTAACA+GGG - chr2_2:17721895-17721914 Msa0241760:intron 30.0%
AGACATTTACTTACCTTAGA+TGG + chr2_2:17722062-17722081 None:intergenic 30.0%
GATCACATCAATTCAGATTA+AGG + chr2_2:17722091-17722110 None:intergenic 30.0%
GTTTGTTTATCCCAATAACA+AGG + chr2_2:17722326-17722345 None:intergenic 30.0%
TTTCTAAGCTATGATCAGTA+TGG + chr2_2:17722468-17722487 None:intergenic 30.0%
TGATCATAGCTTAGAAAACA+TGG - chr2_2:17722471-17722490 Msa0241760:intron 30.0%
ACAAGTGTTCAAAAAAGACA+CGG + chr2_2:17722759-17722778 None:intergenic 30.0%
CAAGTAATTCATGCAAATTG+AGG + chr2_2:17722929-17722948 None:intergenic 30.0%
TCAGCACCAAAGAAATTTAA+TGG + chr2_2:17723001-17723020 None:intergenic 30.0%
ACCCTAATTCCATATCTTAA+TGG - chr2_2:17723137-17723156 Msa0241760:intron 30.0%
ACACCTTTACCATTAAGATA+TGG + chr2_2:17723149-17723168 None:intergenic 30.0%
AGCAATATGTGCAGAATTTA+TGG - chr2_2:17723173-17723192 Msa0241760:intron 30.0%
!!! ATTTTGATTGTGCCAGAAAT+GGG - chr2_2:17723196-17723215 Msa0241760:intron 30.0%
ATTAAATATGACAGGATCCT+AGG + chr2_2:17723251-17723270 None:intergenic 30.0%
AAAGAGCTGGATTCAATTGA+TGG + chr2_2:17720512-17720531 None:intergenic 35.0%
GAAACAAAGGCTATATGCTA+TGG + chr2_2:17720642-17720661 None:intergenic 35.0%
! TAGCATATAGCCTTTGTTTC+GGG - chr2_2:17720642-17720661 Msa0241760:exon 35.0%
TAAATGACACCATGGAAGAA+TGG + chr2_2:17720688-17720707 None:intergenic 35.0%
GTCATTGTTAAATGACACCA+TGG + chr2_2:17720696-17720715 None:intergenic 35.0%
!! TGGTGTCATTTAACAATGAC+TGG - chr2_2:17720696-17720715 Msa0241760:CDS 35.0%
!! GGTGTCATTTAACAATGACT+GGG - chr2_2:17720697-17720716 Msa0241760:CDS 35.0%
TAACAATGACTGGGAAACAT+TGG - chr2_2:17720706-17720725 Msa0241760:CDS 35.0%
AACAATGACTGGGAAACATT+GGG - chr2_2:17720707-17720726 Msa0241760:CDS 35.0%
GCTAGATACAAGAATTAGTG+AGG + chr2_2:17720870-17720889 None:intergenic 35.0%
TCTCTAGGTTACTGAAGTTT+GGG + chr2_2:17720924-17720943 None:intergenic 35.0%
TTCTCTAGGTTACTGAAGTT+TGG + chr2_2:17720925-17720944 None:intergenic 35.0%
TATTTGCAGAGATGGCAAAT+CGG - chr2_2:17721179-17721198 Msa0241760:intron 35.0%
TCGTGAAACTAGCATTCAAA+GGG + chr2_2:17721454-17721473 None:intergenic 35.0%
AGGTCAGAGAAAGAAAACAA+GGG + chr2_2:17721540-17721559 None:intergenic 35.0%
AAGGTCAGAGAAAGAAAACA+AGG + chr2_2:17721541-17721560 None:intergenic 35.0%
!! GTAGTTACTCAATTTTGGGA+GGG + chr2_2:17721573-17721592 None:intergenic 35.0%
! TGTAGTTACTCAATTTTGGG+AGG + chr2_2:17721574-17721593 None:intergenic 35.0%
CTAAGTCCATAGAGAAAGTA+TGG - chr2_2:17721600-17721619 Msa0241760:CDS 35.0%
GTTGCATAAATATTCTGCTG+AGG + chr2_2:17721636-17721655 None:intergenic 35.0%
CATAGCAAAGGAGTTCTTAA+TGG - chr2_2:17721770-17721789 Msa0241760:CDS 35.0%
TAGCAAAGGAGTTCTTAATG+GGG - chr2_2:17721772-17721791 Msa0241760:CDS 35.0%
AGATTTGAAAACGGGATCAT+AGG - chr2_2:17721868-17721887 Msa0241760:intron 35.0%
GTACACCAAATGAAGATACA+TGG - chr2_2:17721988-17722007 Msa0241760:intron 35.0%
TTAAATCAACATTTCCCAGG+TGG - chr2_2:17722036-17722055 Msa0241760:intron 35.0%
AACCTTATCTTGAACTTTGC+AGG - chr2_2:17722130-17722149 Msa0241760:intron 35.0%
AATAACAAGGATTCAGACTG+AGG + chr2_2:17722313-17722332 None:intergenic 35.0%
! TCAGTCTGAATCCTTGTTAT+TGG - chr2_2:17722312-17722331 Msa0241760:intron 35.0%
!! CAGTCTGAATCCTTGTTATT+GGG - chr2_2:17722313-17722332 Msa0241760:intron 35.0%
!!! TTTTTTGGTGATTGATGACG+TGG - chr2_2:17722634-17722653 Msa0241760:CDS 35.0%
GTAATTCATGCAAATTGAGG+AGG + chr2_2:17722926-17722945 None:intergenic 35.0%
!!! GATTTTGATTGTGCCAGAAA+TGG - chr2_2:17723195-17723214 Msa0241760:intron 35.0%
AAAAATAGCACACCCATTTC+TGG + chr2_2:17723211-17723230 None:intergenic 35.0%
TCAGACTTGCACAAAAAAGA+AGG + chr2_2:17723321-17723340 None:intergenic 35.0%
!!! CTTTTTTGTGCAAGTCTGAA+TGG - chr2_2:17723322-17723341 Msa0241760:intron 35.0%
AAGTCTGAATGGCAATATAC+AGG - chr2_2:17723333-17723352 Msa0241760:intron 35.0%
AGGAAAGACCTGAATGGAAA+TGG - chr2_2:17720412-17720431 Msa0241760:three_prime_UTR 40.0%
GGAAAGACCTGAATGGAAAT+GGG - chr2_2:17720413-17720432 Msa0241760:three_prime_UTR 40.0%
GGGAGTAACCAAATGAGTTA+CGG - chr2_2:17720433-17720452 Msa0241760:three_prime_UTR 40.0%
AGTAACCAAATGAGTTACGG+AGG - chr2_2:17720436-17720455 Msa0241760:three_prime_UTR 40.0%
! TTTGAAACCCAGAAGCACAA+AGG + chr2_2:17720468-17720487 None:intergenic 40.0%
GTTTCAAACTCTCGTGTCAT+GGG - chr2_2:17720480-17720499 Msa0241760:three_prime_UTR 40.0%
GAACAGAAAGAGAAAAGAGC+TGG + chr2_2:17720525-17720544 None:intergenic 40.0%
GGAAATGGTTGAGAAACCAA+GGG + chr2_2:17720554-17720573 None:intergenic 40.0%
AAAGGCTATATGCTATGGCA+TGG + chr2_2:17720637-17720656 None:intergenic 40.0%
ATCTGACAAACCCGAAACAA+AGG + chr2_2:17720655-17720674 None:intergenic 40.0%
!! GTTTCGGGTTTGTCAGATTT+CGG - chr2_2:17720657-17720676 Msa0241760:CDS 40.0%
TTGGGAATGCTGATGTAATC+TGG - chr2_2:17720725-17720744 Msa0241760:intron 40.0%
AGCAATGAAGGATCACTACT+AGG + chr2_2:17720819-17720838 None:intergenic 40.0%
AGTAGTGATCCTTCATTGCT+AGG - chr2_2:17720819-17720838 Msa0241760:intron 40.0%
GTAGTGATCCTTCATTGCTA+GGG - chr2_2:17720820-17720839 Msa0241760:intron 40.0%
CTCTAGGTTACTGAAGTTTG+GGG + chr2_2:17720923-17720942 None:intergenic 40.0%
!! CGGAAAGGTGTTATTGAAGA+TGG - chr2_2:17721019-17721038 Msa0241760:intron 40.0%
GTTTGTAGGTAGTTACACTG+TGG - chr2_2:17721083-17721102 Msa0241760:intron 40.0%
CGAGATCCAAGCAATATTTC+CGG + chr2_2:17721118-17721137 None:intergenic 40.0%
! ATTCTACCCCAGTTGATGTT+TGG - chr2_2:17721143-17721162 Msa0241760:intron 40.0%
GGGATGTATATTTGCAGAGA+TGG - chr2_2:17721171-17721190 Msa0241760:intron 40.0%
TCCATAGGACTTGTACTTCT+TGG - chr2_2:17721270-17721289 Msa0241760:intron 40.0%
! ACCAAGAAGTACAAGTCCTA+TGG + chr2_2:17721274-17721293 None:intergenic 40.0%
GGCCATCAAATGTATCAACA+TGG + chr2_2:17721427-17721446 None:intergenic 40.0%
AACTAGCATTCAAAGGGTCA+TGG + chr2_2:17721448-17721467 None:intergenic 40.0%
CTCGTGAAACTAGCATTCAA+AGG + chr2_2:17721455-17721474 None:intergenic 40.0%
AGAAAACAAGGGGATTAGAC+AGG + chr2_2:17721529-17721548 None:intergenic 40.0%
GGTCAGAGAAAGAAAACAAG+GGG + chr2_2:17721539-17721558 None:intergenic 40.0%
! TTTGGGAGGGTAGAGTTTTA+AGG + chr2_2:17721560-17721579 None:intergenic 40.0%
CTGACTGAAATGCATAGCAA+AGG - chr2_2:17721758-17721777 Msa0241760:CDS 40.0%
GTCCTGCAAAGTTCAAGATA+AGG + chr2_2:17722135-17722154 None:intergenic 40.0%
TTAAGAAGATCAAGACCAGC+TGG + chr2_2:17722185-17722204 None:intergenic 40.0%
GTTTATACCTCGATTGTTGC+CGG - chr2_2:17722267-17722286 Msa0241760:intron 40.0%
CAAAAAAGACACGGCAATTG+AGG + chr2_2:17722750-17722769 None:intergenic 40.0%
CTAATTATCCTGCCATACAG+AGG + chr2_2:17722819-17722838 None:intergenic 40.0%
GGAGGAAAAAACTGATAGAG+AGG + chr2_2:17722908-17722927 None:intergenic 40.0%
! CTGGCAGTAATTCTTTTGGT+GGG + chr2_2:17723075-17723094 None:intergenic 40.0%
! GCTACTTTCTTCAAAGACCT+AGG - chr2_2:17723231-17723250 Msa0241760:intron 40.0%
TGGATGAGGAAAGACCTGAA+TGG - chr2_2:17720406-17720425 Msa0241760:three_prime_UTR 45.0%
GGTTACTCCCATTTCCATTC+AGG + chr2_2:17720423-17720442 None:intergenic 45.0%
GGTTTCAAACTCTCGTGTCA+TGG - chr2_2:17720479-17720498 Msa0241760:three_prime_UTR 45.0%
ATGGTTGAGAAACCAAGGGA+GGG + chr2_2:17720550-17720569 None:intergenic 45.0%
AATGGTTGAGAAACCAAGGG+AGG + chr2_2:17720551-17720570 None:intergenic 45.0%
GGGAAATGGTTGAGAAACCA+AGG + chr2_2:17720555-17720574 None:intergenic 45.0%
ATTTCCCTGAGTTGTGCCTT+GGG - chr2_2:17720568-17720587 Msa0241760:three_prime_UTR 45.0%
! TGGTTTTCATGTGGAGGTCA+TGG + chr2_2:17720614-17720633 None:intergenic 45.0%
! ATGGCATGGTGGTTTTCATG+TGG + chr2_2:17720623-17720642 None:intergenic 45.0%
GACACCATGGAAGAATGGAA+TGG + chr2_2:17720683-17720702 None:intergenic 45.0%
ACAGATGACCCTAGCAATGA+AGG + chr2_2:17720831-17720850 None:intergenic 45.0%
ATCTAGCCTCAACCTTTGCA+CGG - chr2_2:17720883-17720902 Msa0241760:intron 45.0%
CAAGCAATATTTCCGGAGCT+CGG + chr2_2:17721111-17721130 None:intergenic 45.0%
CACTGACCAAACATCAACTG+GGG + chr2_2:17721152-17721171 None:intergenic 45.0%
CCACTGACCAAACATCAACT+GGG + chr2_2:17721153-17721172 None:intergenic 45.0%
! CCAGTTGATGTTTGGTCAGT+GGG - chr2_2:17721151-17721170 Msa0241760:intron 45.0%
CCTGGCCATGTATCTTCATT+TGG + chr2_2:17721996-17722015 None:intergenic 45.0%
CCAAATGAAGATACATGGCC+AGG - chr2_2:17721993-17722012 Msa0241760:intron 45.0%
TCAGGCAATGAAGTTACTCC+TGG + chr2_2:17722014-17722033 None:intergenic 45.0%
! TGGCTCAAGATTTGGAACCA+CGG + chr2_2:17722165-17722184 None:intergenic 45.0%
TGGTTTACGCATCCTCTGTA+TGG - chr2_2:17722804-17722823 Msa0241760:intron 45.0%
ATTCCAGAGCATGCTTTGCT+TGG - chr2_2:17723047-17723066 Msa0241760:intron 45.0%
! CCTGGCAGTAATTCTTTTGG+TGG + chr2_2:17723076-17723095 None:intergenic 45.0%
CCACCAAAAGAATTACTGCC+AGG - chr2_2:17723073-17723092 Msa0241760:intron 45.0%
! GCTCCTGGCAGTAATTCTTT+TGG + chr2_2:17723079-17723098 None:intergenic 45.0%
!! AAAAATATATTGATAAATAT+TGG - chr2_2:17722431-17722450 Msa0241760:intron 5.0%
CAGTGGCAACATCCTATCTC+TGG + chr2_2:17720379-17720398 None:intergenic 50.0%
AGATAGGATGTTGCCACTGC+TGG - chr2_2:17720380-17720399 Msa0241760:three_prime_UTR 50.0%
! ACCCAGAAGCACAAAGGACT+CGG + chr2_2:17720462-17720481 None:intergenic 50.0%
CAAGGCACAACTCAGGGAAA+TGG + chr2_2:17720569-17720588 None:intergenic 50.0%
CATTTCCCTGAGTTGTGCCT+TGG - chr2_2:17720567-17720586 Msa0241760:three_prime_UTR 50.0%
TGCCTTGGGTACCATGAGAA+TGG - chr2_2:17720582-17720601 Msa0241760:three_prime_UTR 50.0%
CACCATTCTCATGGTACCCA+AGG + chr2_2:17720587-17720606 None:intergenic 50.0%
CTTGGGTACCATGAGAATGG+TGG - chr2_2:17720585-17720604 Msa0241760:three_prime_UTR 50.0%
CATGGAAGCCACCATTCTCA+TGG + chr2_2:17720596-17720615 None:intergenic 50.0%
! GCATGGTGGTTTTCATGTGG+AGG + chr2_2:17720620-17720639 None:intergenic 50.0%
GGCTATATGCTATGGCATGG+TGG + chr2_2:17720634-17720653 None:intergenic 50.0%
TCGGCCATTCCATTCTTCCA+TGG - chr2_2:17720676-17720695 Msa0241760:CDS 50.0%
TCTAGCCTCAACCTTTGCAC+GGG - chr2_2:17720884-17720903 Msa0241760:intron 50.0%
! GTTTTCCCGTGCAAAGGTTG+AGG + chr2_2:17720892-17720911 None:intergenic 50.0%
! GTTACTGAAGTTTGGGGCAG+GGG + chr2_2:17720917-17720936 None:intergenic 50.0%
! GGTTACTGAAGTTTGGGGCA+GGG + chr2_2:17720918-17720937 None:intergenic 50.0%
! AGGTTACTGAAGTTTGGGGC+AGG + chr2_2:17720919-17720938 None:intergenic 50.0%
CGAGCTCCGGAAATATTGCT+TGG - chr2_2:17721109-17721128 Msa0241760:intron 50.0%
! CCCAGTTGATGTTTGGTCAG+TGG - chr2_2:17721150-17721169 Msa0241760:intron 50.0%
CCCACTGACCAAACATCAAC+TGG + chr2_2:17721154-17721173 None:intergenic 50.0%
CATCAATCTCGGAATCCCCA+GGG + chr2_2:17721216-17721235 None:intergenic 50.0%
TCATCAATCTCGGAATCCCC+AGG + chr2_2:17721217-17721236 None:intergenic 50.0%
CAGGCAGATCAGCAAGAATG+AGG + chr2_2:17721510-17721529 None:intergenic 50.0%
ATTTCCCAGGTGGCCATCTA+AGG - chr2_2:17722046-17722065 Msa0241760:intron 50.0%
CTTACCTTAGATGGCCACCT+GGG + chr2_2:17722053-17722072 None:intergenic 50.0%
ACTTACCTTAGATGGCCACC+TGG + chr2_2:17722054-17722073 None:intergenic 50.0%
! GATTTGGAACCACGGTTGCT+AGG + chr2_2:17722157-17722176 None:intergenic 50.0%
GTTCCAAATCTTGAGCCAGC+TGG - chr2_2:17722167-17722186 Msa0241760:intron 50.0%
! AGACCAGCTGGCTCAAGATT+TGG + chr2_2:17722173-17722192 None:intergenic 50.0%
!! GTTGCCGGCTTCAGTATCTT+AGG - chr2_2:17722282-17722301 Msa0241760:intron 50.0%
CCAGCCTAAGATACTGAAGC+CGG + chr2_2:17722289-17722308 None:intergenic 50.0%
CGGCTTCAGTATCTTAGGCT+GGG - chr2_2:17722287-17722306 Msa0241760:intron 50.0%
CCAGCTTGAGATGCAGAAGA+GGG + chr2_2:17722787-17722806 None:intergenic 50.0%
ACCAGCTTGAGATGCAGAAG+AGG + chr2_2:17722788-17722807 None:intergenic 50.0%
TTACGCATCCTCTGTATGGC+AGG - chr2_2:17722808-17722827 Msa0241760:intron 50.0%
GATCCAAGCAAAGCATGCTC+TGG + chr2_2:17723053-17723072 None:intergenic 50.0%
GATGTTGCCACTGCTGGAGA+TGG - chr2_2:17720386-17720405 Msa0241760:three_prime_UTR 55.0%
TCCTCATCCATCTCCAGCAG+TGG + chr2_2:17720396-17720415 None:intergenic 55.0%
CTCGGCCTCCGTAACTCATT+TGG + chr2_2:17720444-17720463 None:intergenic 55.0%
GCCGAGTCCTTTGTGCTTCT+GGG - chr2_2:17720458-17720477 Msa0241760:three_prime_UTR 55.0%
CTTTCTGTTCCTCCCTCCCT+TGG - chr2_2:17720535-17720554 Msa0241760:three_prime_UTR 55.0%
GTTGAGAAACCAAGGGAGGG+AGG + chr2_2:17720547-17720566 None:intergenic 55.0%
GGTACCCAAGGCACAACTCA+GGG + chr2_2:17720575-17720594 None:intergenic 55.0%
TGGTACCCAAGGCACAACTC+AGG + chr2_2:17720576-17720595 None:intergenic 55.0%
! TACACTGTGGTACCGAGCTC+CGG - chr2_2:17721096-17721115 Msa0241760:intron 55.0%
AATCGGCGACCTCTATTCCC+TGG - chr2_2:17721196-17721215 Msa0241760:intron 55.0%
ATCGGCGACCTCTATTCCCT+GGG - chr2_2:17721197-17721216 Msa0241760:intron 55.0%
TCGGAATCCCCAGGGAATAG+AGG + chr2_2:17721208-17721227 None:intergenic 55.0%
TTTGCAGGACCTAGCAACCG+TGG - chr2_2:17722145-17722164 Msa0241760:intron 55.0%
ACTGAAGCCGGCAACAATCG+AGG + chr2_2:17722277-17722296 None:intergenic 55.0%
CCGGCTTCAGTATCTTAGGC+TGG - chr2_2:17722286-17722305 Msa0241760:intron 55.0%
CCCTCTTCTGCATCTCAAGC+TGG - chr2_2:17722784-17722803 Msa0241760:intron 55.0%
!! AATTACTGCCAGGAGCGCTG+TGG - chr2_2:17723083-17723102 Msa0241760:intron 55.0%
GCCACTGCTGGAGATGGATG+AGG - chr2_2:17720392-17720411 Msa0241760:three_prime_UTR 60.0%
GGCCGAGTCCTTTGTGCTTC+TGG - chr2_2:17720457-17720476 Msa0241760:three_prime_UTR 60.0%
! GGGGAGGTTTTCCCGTGCAA+AGG + chr2_2:17720898-17720917 None:intergenic 60.0%
! ACTGAAGTTTGGGGCAGGGG+AGG + chr2_2:17720914-17720933 None:intergenic 60.0%
TCGGCGACCTCTATTCCCTG+GGG - chr2_2:17721198-17721217 Msa0241760:intron 60.0%
TTCATGCTCCACAGCGCTCC+TGG + chr2_2:17723094-17723113 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 17720366 17723421 17720366 ID=Msa0241760;Name=Msa0241760
chr2_2 mRNA 17720366 17723421 17720366 ID=Msa0241760-mRNA-1;Parent=Msa0241760;Name=Msa0241760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.6|0.8|1|1|5|278|133
chr2_2 exon 17720366 17720733 17720366 ID=Msa0241760-mRNA-1:exon:7221;Parent=Msa0241760-mRNA-1
chr2_2 exon 17721582 17721635 17721582 ID=Msa0241760-mRNA-1:exon:7220;Parent=Msa0241760-mRNA-1
chr2_2 exon 17721720 17721807 17721720 ID=Msa0241760-mRNA-1:exon:7219;Parent=Msa0241760-mRNA-1
chr2_2 exon 17722533 17722696 17722533 ID=Msa0241760-mRNA-1:exon:7218;Parent=Msa0241760-mRNA-1
chr2_2 exon 17723416 17723421 17723416 ID=Msa0241760-mRNA-1:exon:7217;Parent=Msa0241760-mRNA-1
chr2_2 CDS 17723416 17723421 17723416 ID=Msa0241760-mRNA-1:cds;Parent=Msa0241760-mRNA-1
chr2_2 CDS 17722533 17722696 17722533 ID=Msa0241760-mRNA-1:cds;Parent=Msa0241760-mRNA-1
chr2_2 CDS 17721720 17721807 17721720 ID=Msa0241760-mRNA-1:cds;Parent=Msa0241760-mRNA-1
chr2_2 CDS 17721582 17721635 17721582 ID=Msa0241760-mRNA-1:cds;Parent=Msa0241760-mRNA-1
chr2_2 CDS 17720644 17720733 17720644 ID=Msa0241760-mRNA-1:cds;Parent=Msa0241760-mRNA-1
chr2_2 three_prime_UTR 17720366 17720643 17720366 ID=Msa0241760-mRNA-1:three_prime_utr;Parent=Msa0241760-mRNA-1
Gene Sequence

>Msa0241760

ATGGAGGTAGTTACACTGTGGTACCGAGCTCCGGAAATATTGCTTGGATCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGCAAATCGGCGACCTCTATTCCCTGGGGATTCCGAGATTGATGAGTTATTTAAAATATTCAGAATCTTGGGTACACCAAATGAAGATACATGGCCAGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAGGTGGCCATCTAAGGACCTAGCAACCGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTAATAGCATGCTTTGCTTGGATCCCACCAAAAGAATTACTGCCAGGAGCGCTGTGGAGCATGAATATTTCAAAGACATTAAGTTTGTACCCTAA
Protein sequence

>Msa0241760

MEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLFPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP*