AlfalfaGEDB | Msa0242500

M. sativa cultivar zhongmu-4 / Msa0242500

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242500	XP_024628698.2	95.116	778	38	0	54	831	1	778	0.0	1538

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242500	sp\|Q9SZL8\|FRS5_ARATH	33.794	651	416	10	86	724	46	693	7.86e-118	380

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242500	A0A3Q7Y261	80.084	713	137	3	85	795	10	719	0.0	1186

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TFs/TRs:

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Gene ID	Type	Classification
Msa0242500	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242500	MtrunA17_Chr3g0082121	71.571	700	186	5	69	764	2	692	0.0	1011
Msa0242500	MtrunA17_Chr2g0324011	46.967	577	296	6	111	680	10	583	3.51e-179	530
Msa0242500	MtrunA17_Chr1g0164591	73.651	315	74	2	189	502	1	307	1.94e-169	494
Msa0242500	MtrunA17_Chr6g0458391	41.653	605	308	12	75	666	194	766	2.00e-154	472
Msa0242500	MtrunA17_Chr6g0458391	39.683	126	73	3	111	235	91	214	4.27e-20	95.9
Msa0242500	MtrunA17_Chr1g0203721	39.024	656	386	10	102	746	54	706	4.03e-152	469
Msa0242500	MtrunA17_Chr5g0448761	34.504	655	410	12	111	751	60	709	1.39e-124	394
Msa0242500	MtrunA17_Chr1g0202341	33.388	605	384	10	75	665	10	609	6.38e-109	350
Msa0242500	MtrunA17_Chr2g0287651	32.904	699	404	19	94	758	45	712	8.19e-104	342
Msa0242500	MtrunA17_Chr8g0363841	32.860	563	354	10	118	665	24	577	8.63e-101	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242500	AT4G38180.1	33.794	651	416	10	86	724	46	693	7.99e-119	380
Msa0242500	AT4G15090.1	29.053	623	429	6	111	727	51	666	4.86e-93	312
Msa0242500	AT4G15090.5	29.053	623	429	6	111	727	51	666	4.86e-93	312
Msa0242500	AT4G15090.3	29.053	623	429	6	111	727	51	666	4.86e-93	312
Msa0242500	AT4G15090.2	29.053	623	429	6	111	727	51	666	4.86e-93	312
Msa0242500	AT4G15090.4	29.053	623	429	6	111	727	51	666	4.86e-93	312
Msa0242500	AT3G22170.2	29.355	620	378	13	115	710	74	657	2.91e-86	294
Msa0242500	AT3G22170.1	29.355	620	378	13	115	710	74	657	2.91e-86	294
Msa0242500	AT1G76320.3	30.132	604	394	13	115	710	1	584	2.12e-85	287
Msa0242500	AT1G76320.2	30.017	603	396	12	115	710	1	584	4.76e-85	288

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Find 198 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCCCTTCTTTCAAG+TGG	0.538998	2_2:-18700156	Msa0242500:CDS
AAACCACCTCTCCTTCCCAT+CGG	0.675923	2_2:-18701650	Msa0242500:CDS
AAACCTATATACTTAAGCAA+TGG	0.582047	2_2:-18699316	Msa0242500:CDS
AAAGAGTTCACAATTCGGTT+TGG	0.397902	2_2:-18699960	Msa0242500:CDS
AAATAAGGGTTATCGACCGC+TGG	0.503228	2_2:-18700245	Msa0242500:CDS
AAATGATGAAATTGACAATG+TGG	0.705740	2_2:-18699030	Msa0242500:CDS
AAATTTAGTACAGTCGTTAC+CGG	0.437312	2_2:-18698877	Msa0242500:intron
AACAACAATGGCAGCGGCGC+AGG	0.452252	2_2:+18701501	None:intergenic
AAGATTCACATGCTACAAAG+AGG	0.619398	2_2:-18700809	Msa0242500:CDS
AAGGAGAGTTTGCAAGCGCG+TGG	0.567088	2_2:-18696699	Msa0242500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTACCTTGATCAACAACAA+TGG	+	chr2_2:18696909-18696928	None:intergenic	30.0%
AGAAATTAGAATGGGATGTT+TGG	-	chr2_2:18697658-18697677	Msa0242500:intron	30.0%
TGAAAGTCATAATAGAACGA+GGG	+	chr2_2:18698022-18698041	None:intergenic	30.0%
TTGAAAGTCATAATAGAACG+AGG	+	chr2_2:18698023-18698042	None:intergenic	30.0%
CACCACATACAAAACAAATA+AGG	-	chr2_2:18698135-18698154	Msa0242500:intron	30.0%
TTGTTGGACTAAATAATCAC+AGG	-	chr2_2:18698179-18698198	Msa0242500:intron	30.0%
CAAATAACCACTTGAAAGAA+GGG	+	chr2_2:18698249-18698268	None:intergenic	30.0%
TCAAATAACCACTTGAAAGA+AGG	+	chr2_2:18698250-18698269	None:intergenic	30.0%
ATAGATGTACATGAAGATGA+GGG	-	chr2_2:18698472-18698491	Msa0242500:intron	30.0%
GTTGAGCATAATATATTGGA+AGG	-	chr2_2:18698526-18698545	Msa0242500:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	18696671	18701746	18696671	ID=Msa0242500;Name=Msa0242500
chr2_2	mRNA	18696671	18701746	18696671	ID=Msa0242500-mRNA-1;Parent=Msa0242500;Name=Msa0242500-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|884
chr2_2	exon	18701494	18701746	18701494	ID=Msa0242500-mRNA-1:exon:7685;Parent=Msa0242500-mRNA-1
chr2_2	exon	18698878	18701042	18698878	ID=Msa0242500-mRNA-1:exon:7684;Parent=Msa0242500-mRNA-1
chr2_2	exon	18698713	18698786	18698713	ID=Msa0242500-mRNA-1:exon:7683;Parent=Msa0242500-mRNA-1
chr2_2	exon	18696671	18696833	18696671	ID=Msa0242500-mRNA-1:exon:7682;Parent=Msa0242500-mRNA-1
chr2_2	CDS	18701494	18701746	18701494	ID=Msa0242500-mRNA-1:cds;Parent=Msa0242500-mRNA-1
chr2_2	CDS	18698878	18701042	18698878	ID=Msa0242500-mRNA-1:cds;Parent=Msa0242500-mRNA-1
chr2_2	CDS	18698713	18698786	18698713	ID=Msa0242500-mRNA-1:cds;Parent=Msa0242500-mRNA-1
chr2_2	CDS	18696671	18696833	18696671	ID=Msa0242500-mRNA-1:cds;Parent=Msa0242500-mRNA-1

Gene Sequence

>Msa0242500

ATGCGCGCTCTGCTATCAAACTCTTCCTCTTCCTTTCTCAGACAACTTTCCACCTTCCTCCCCTATAATCATCGAAACCACCTCTCCTTCCCATCGGCTCCGCCGTCACCTCTCCTTCTCTCTCGCCGCTGCACCTCTCTCTTGGTCTCCGTCAACGTCATGAGCGAACCCCATCATCCTGCTACCAACACTAACGAACCCGCCGCCGCCGTCTCCGACCATCCCTGCGCCGCTGCCATTGTTGTTGATCAAGATTGTGTCAATAAATTGGTTAACAACATTCATGAACAAAATGTGCAACACGGACAAGGAAGTATTGCCAACAATGTACCTCACTTGGAAATGAAGTTTGATTCTGAGGCAGCGGCTTATGACTTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAGTTGATGGAGTTTTGACTTCAAGAAGATTCACATGCTACAAAGAGGGTGTACGAGGTGTTGACAAAAGACGTCAACCAAAAGGGGAGCCTAGAGCAGAAATTAGAATGGGATGTTTGGCGCGTATGGTTATTTCACTCGATCGGAAGATAGAGAAATATAAAGTTGTTGACTTTATAGCTGAACATAACCACCAACTTCAACCTGAGCATGTTCATATGATTCTCTCTCATCGACGCATATCTGAGACACAAGCATCACAAATTGTCTTGGGAGATGAATATGGATTAAGACCAAAAGATTTGCATGAATATATATCCAAGCAAGCTGGTGGAATACAGATAGTTGGTTTTACAAAAAAAGACCTTACGAATTACCTTGAAACCAAAAGGAAACAGTCACTAAAGTATGGTGAGGTGGGTGCACTGATGATGTATTTCAAAAAAGAAAGTGAAAATCCCTCGTTCTATTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCGGATGCACAAATGATAAATGATTATGGGTATTTTGGTGATGTTATTACTTTTGACACCACATACAAAACAAATAAGGGTTATCGACCGCTGGGAGTATTTGTTGGACTAAATAATCACAGGCAAACAGTCATTTTTGGTGCAGCATTGTTATATGACGAAACAATCCCTTCTTTCAAGTGGTTATTTGAAACATTTCTCAAGGCAATGGGTGGTAAAAAGCCAAAAACCATTTTGACGGATCAAGACACCGCGATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTTTACGGCATGTGAACCACTTATATCAAAAGAGTTCACAATTCGGTTTGGATTTTGAAGCATTGATAGATGTACATGAAGATGAGGGTGAATTTTTGAATGCTTGGAATTCTTTACTTGTTGAGCATAATATATTGGAAGGGTCGTGGTTGCATACAATTTATCAATTGAAGGAAAAATGGGCATGGACATATGTCCGGAAAACATTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAGAACCATTTGAAGTCTGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGAGCTGTTAATGGTAAACGAAACAAAGAGTCAGAAGCTGAATATGAGTCAAAAAATAAGCTGCCTAGATTGAAAATGAAGAAGGCTCGTATGCTCATACAAGCTGCAAATGTTTACACTCCTAGAATATTTGAGGAGTTCCAAGAGGAATATGAAGAATATCAAGACACTTGCGTAAAAGATTTGAAAGAAGGTTTGTATGCTGTCACAAACTATGATAATCCAACGGAGAGGATAGTTATGGGAAATGCTATGGAACAAAAAGTTTCATGTGATTGTCATAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCTGAAACCTATATACTTAAGCAATGGACAAGAAATGCAAGGTTGGGAAGTGATCAAGATTGGAAAGGGAGGCATGTTGAATTAGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTAACCAACAAAGCTTCAGAAACTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAATTGATGATATGTTGGCCAAAAAGTATGTGGATGGAGAATCAGGGGGCATGGTTCATGTATCCATATCAATTGCAAATGATGAAATTGACAATGTGGACACCGTTGGTATGGCAAAAGGCATAGCTAATCGAGAAAGTTCACGCAAGCGGAAAAAGCGATATAAATCTTGGATTGAGAAAAAAGATAAAAAGACAAAGATGTGCTCCAAGAGAAAGAGATCTGGTGAAAATTTAGTACAGTCGTTACCGCAAGAAACTACAGTTCAAGCGACACAATCAAGTCAAGTTGGCAATGGAACTCAACATCAAGCTACAATCCAAGAAAGGGGGGAGAGTGCGCCAGTGGTTGGAGGGAGAGGTGCGGTGGCGGTGGCGGCGGCGGCAGTGGCGGCGGTGGCGATGGGAGGGAGAGAGAGGTGCTATCTGAGAAGGAAGAAGGAGAGTTTGCAAGCGCGTGGGATTTGTTTCAGAGTAGAGACCGCGTAG

Protein sequence

>Msa0242500

MRALLSNSSSSFLRQLSTFLPYNHRNHLSFPSAPPSPLLLSRRCTSLLVSVNVMSEPHHPATNTNEPAAAVSDHPCAAAIVVDQDCVNKLVNNIHEQNVQHGQGSIANNVPHLEMKFDSEAAAYDFYNEYSKRIGFGIRREYGNKSRVDGVLTSRRFTCYKEGVRGVDKRRQPKGEPRAEIRMGCLARMVISLDRKIEKYKVVDFIAEHNHQLQPEHVHMILSHRRISETQASQIVLGDEYGLRPKDLHEYISKQAGGIQIVGFTKKDLTNYLETKRKQSLKYGEVGALMMYFKKESENPSFYYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKGYRPLGVFVGLNNHRQTVIFGAALLYDETIPSFKWLFETFLKAMGGKKPKTILTDQDTAMAKAISLVMPETFHGLCTWHIRQNALRHVNHLYQKSSQFGLDFEALIDVHEDEGEFLNAWNSLLVEHNILEGSWLHTIYQLKEKWAWTYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFKRAVNGKRNKESEAEYESKNKLPRLKMKKARMLIQAANVYTPRIFEEFQEEYEEYQDTCVKDLKEGLYAVTNYDNPTERIVMGNAMEQKVSCDCHKFETHGILCSHALKVLDVMNIKLIPETYILKQWTRNARLGSDQDWKGRHVELDIKAHFMKRYNELCPRMVKLTNKASETHETYTFLSKVYEESSKIIDDMLAKKYVDGESGGMVHVSISIANDEIDNVDTVGMAKGIANRESSRKRKKRYKSWIEKKDKKTKMCSKRKRSGENLVQSLPQETTVQATQSSQVGNGTQHQATIQERGESAPVVGGRGAVAVAAAAVAAVAMGGRERCYLRRKKESLQARGICFRVETA*