Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242570 | KEH26852.1 | 74.118 | 85 | 22 | 0 | 162 | 246 | 64 | 148 | 4.04e-35 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242570 | A0A072UB72 | 74.118 | 85 | 22 | 0 | 162 | 246 | 64 | 148 | 1.93e-35 | 138 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0242570 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242570 | MtrunA17_Chr5g0430431 | 30.040 | 253 | 157 | 4 | 1 | 245 | 20 | 260 | 8.71e-25 | 99.0 |
| Msa0242570 | MtrunA17_Chr2g0281511 | 33.333 | 84 | 56 | 0 | 162 | 245 | 39 | 122 | 6.08e-15 | 69.3 |
| Msa0242570 | MtrunA17_Chr2g0309121 | 33.000 | 100 | 64 | 2 | 143 | 242 | 22 | 118 | 8.46e-15 | 68.9 |
| Msa0242570 | MtrunA17_Chr6g0459981 | 30.986 | 142 | 87 | 4 | 109 | 244 | 24 | 160 | 2.18e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACAAGCAAGGATTTATT+AGG | 0.154576 | 2_2:-18810228 | Msa0242570:CDS |
| TCCACATTGTTGGCAACTTC+TGG | 0.229172 | 2_2:+18810031 | None:intergenic |
| GCTATGGCTCGGTCTGTTTA+TGG | 0.249815 | 2_2:-18809848 | Msa0242570:CDS |
| GCCTTAATTGCTGGATTGTT+TGG | 0.262234 | 2_2:-18810136 | Msa0242570:CDS |
| GCCAAACAATCCAGCAATTA+AGG | 0.272470 | 2_2:+18810135 | None:intergenic |
| GATTGTTATCCGTCTTGATA+TGG | 0.282981 | 2_2:-18810188 | Msa0242570:CDS |
| ACCAAGATCATCCACTTTCT+TGG | 0.288727 | 2_2:+18809364 | None:intergenic |
| CTTCTTGCTCACCTTCATCT+TGG | 0.309395 | 2_2:+18809909 | None:intergenic |
| GTAGAGTGTCTTGATTTCTT+AGG | 0.326477 | 2_2:+18810254 | None:intergenic |
| TAACAAGCAAGGATTTATTA+GGG | 0.339019 | 2_2:-18810227 | Msa0242570:CDS |
| CCCTCCTACAGCATTGTTTG+TGG | 0.371272 | 2_2:-18809194 | Msa0242570:CDS |
| TACAGCATTGTTTGTGGATG+TGG | 0.395716 | 2_2:-18809188 | Msa0242570:CDS |
| AAGAATGGTGCCTTAATTGC+TGG | 0.403091 | 2_2:-18810145 | Msa0242570:CDS |
| TAAGCTTGTCACCCTCTTGT+AGG | 0.407804 | 2_2:+18809233 | None:intergenic |
| TAATATCAATGACTTCTTGA+TGG | 0.414621 | 2_2:+18809945 | None:intergenic |
| GTGGATGATCTTGGTTGATC+TGG | 0.419207 | 2_2:-18809356 | Msa0242570:CDS |
| TTGCACTAACTCCACATTGT+TGG | 0.434351 | 2_2:+18810021 | None:intergenic |
| GCAATTTGTTTCTGCTGCTA+TGG | 0.435657 | 2_2:-18809864 | Msa0242570:CDS |
| TCCGTTCAGTCGTGTTTAGC+CGG | 0.450558 | 2_2:+18809311 | None:intergenic |
| AACAAATTGCTCAAAGCGAT+GGG | 0.455874 | 2_2:+18809877 | None:intergenic |
| TGACAAGCTTATCTTTGAGT+TGG | 0.470099 | 2_2:-18809221 | Msa0242570:CDS |
| TTGTTTCTGCTGCTATGGCT+CGG | 0.476505 | 2_2:-18809859 | Msa0242570:CDS |
| CTTGCGAAATTCGAATATCT+AGG | 0.495048 | 2_2:-18810097 | Msa0242570:CDS |
| ATCTCTCTAGAAACACGATT+GGG | 0.496000 | 2_2:+18809397 | None:intergenic |
| ACAGTGTTACATACCTCTGC+CGG | 0.500194 | 2_2:+18810366 | None:intergenic |
| CGTCTTGATATGGATGACTC+TGG | 0.502279 | 2_2:-18810178 | Msa0242570:CDS |
| TGGAGGTTGAGAAAGAATAT+AGG | 0.505564 | 2_2:-18809336 | Msa0242570:CDS |
| ACAACCTCCTGCGCGACTTG+TGG | 0.513014 | 2_2:+18809983 | None:intergenic |
| AATATCAATGACTTCTTGAT+GGG | 0.513294 | 2_2:+18809946 | None:intergenic |
| GGTAACAATGAACATGTTCA+AGG | 0.514845 | 2_2:+18810072 | None:intergenic |
| ATTAGGGATCACGATGGCGG+AGG | 0.518365 | 2_2:-18810211 | Msa0242570:CDS |
| AAACAAATTGCTCAAAGCGA+TGG | 0.534232 | 2_2:+18809876 | None:intergenic |
| TTAGGGATCACGATGGCGGA+GGG | 0.544981 | 2_2:-18810210 | Msa0242570:CDS |
| TCTGGATTAGCATCAGCCAT+GGG | 0.547568 | 2_2:+18810049 | None:intergenic |
| TATTGACTGTGCCAAGAAAG+TGG | 0.556740 | 2_2:-18809375 | Msa0242570:CDS |
| GCCAAGAAAGTGGATGATCT+TGG | 0.556882 | 2_2:-18809365 | Msa0242570:CDS |
| TTTCGTAAGCATGGTGAACC+CGG | 0.556913 | 2_2:-18810385 | None:intergenic |
| TTCTTAGGAGAAAGTACCTG+TGG | 0.560267 | 2_2:-18810290 | Msa0242570:intron |
| TATCTCTCTAGAAACACGAT+TGG | 0.561687 | 2_2:+18809396 | None:intergenic |
| TTCTGGATTAGCATCAGCCA+TGG | 0.566437 | 2_2:+18810048 | None:intergenic |
| TCCACAAACAATGCTGTAGG+AGG | 0.567363 | 2_2:+18809193 | None:intergenic |
| TCTGGAATTTCAATGAAGAA+TGG | 0.568291 | 2_2:-18810160 | Msa0242570:CDS |
| AAACACGACTGAACGGAACA+AGG | 0.570782 | 2_2:-18809305 | Msa0242570:CDS |
| TCAGATGAAGACCAAGATGA+AGG | 0.574883 | 2_2:-18809920 | Msa0242570:CDS |
| TTGAGAAAGAATATAGGTGC+CGG | 0.576447 | 2_2:-18809330 | Msa0242570:CDS |
| AAGCATGGTGAACCCGGCAG+AGG | 0.586095 | 2_2:-18810379 | None:intergenic |
| TGAAAATCCACAAGTCGCGC+AGG | 0.590768 | 2_2:-18809990 | Msa0242570:CDS |
| GATGATCTTGGTTGATCTGG+AGG | 0.594823 | 2_2:-18809353 | Msa0242570:CDS |
| AGATGAAGGTGAGCAAGAAG+AGG | 0.595301 | 2_2:-18809906 | Msa0242570:CDS |
| CAAATTGCTCAAAGCGATGG+GGG | 0.595451 | 2_2:+18809879 | None:intergenic |
| TATTCGAATTTCGCAAGAGT+AGG | 0.596636 | 2_2:+18810103 | None:intergenic |
| CAGTGTTACATACCTCTGCC+GGG | 0.597890 | 2_2:+18810367 | None:intergenic |
| ACTCTACAAATTAACAAGCA+AGG | 0.598382 | 2_2:-18810238 | Msa0242570:CDS |
| AGGTAGAATTGAAAATCCAC+AGG | 0.601572 | 2_2:+18810274 | None:intergenic |
| GTCTGTTTATGGACAACCAA+TGG | 0.604681 | 2_2:-18809837 | Msa0242570:intron |
| GCCGGCTAAACACGACTGAA+CGG | 0.605106 | 2_2:-18809312 | Msa0242570:CDS |
| TGTCACCCTCTTGTAGGCGA+CGG | 0.606670 | 2_2:+18809239 | None:intergenic |
| TGTTTGTGGATGTGGTGCGT+AGG | 0.612879 | 2_2:-18809180 | Msa0242570:CDS |
| CAAAGACCGTCGCCTACAAG+AGG | 0.619952 | 2_2:-18809245 | Msa0242570:CDS |
| ACATCCACAAACAATGCTGT+AGG | 0.623174 | 2_2:+18809190 | None:intergenic |
| GTAACAATGAACATGTTCAA+GGG | 0.625828 | 2_2:+18810073 | None:intergenic |
| AAATCCACAAGTCGCGCAGG+AGG | 0.634892 | 2_2:-18809987 | Msa0242570:CDS |
| TTTATTAGGGATCACGATGG+CGG | 0.638629 | 2_2:-18810214 | Msa0242570:CDS |
| AACACGACTGAACGGAACAA+GGG | 0.646184 | 2_2:-18809304 | Msa0242570:CDS |
| CAGAGTCATCCATATCAAGA+CGG | 0.651142 | 2_2:+18810179 | None:intergenic |
| CTGGATTAGCATCAGCCATG+GGG | 0.653003 | 2_2:+18810050 | None:intergenic |
| TCCAGAAGTTGCCAACAATG+TGG | 0.656828 | 2_2:-18810032 | Msa0242570:CDS |
| CCACAAACAATGCTGTAGGA+GGG | 0.657343 | 2_2:+18809194 | None:intergenic |
| ACAAATTGCTCAAAGCGATG+GGG | 0.661613 | 2_2:+18809878 | None:intergenic |
| AAAGACCGTCGCCTACAAGA+GGG | 0.680199 | 2_2:-18809244 | Msa0242570:CDS |
| TGGATTAGCATCAGCCATGG+GGG | 0.691846 | 2_2:+18810051 | None:intergenic |
| GGATTTATTAGGGATCACGA+TGG | 0.729747 | 2_2:-18810217 | Msa0242570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATAAATCTTATTGATA+AGG | + | chr2_2:18809753-18809772 | None:intergenic | 15.0% |
| !! | TAAGATTTATTTCAAAAATG+AGG | - | chr2_2:18809759-18809778 | Msa0242570:intron | 15.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr2_2:18809931-18809950 | Msa0242570:CDS | 15.0% |
| !!! | ATTTTATGTGCAATATAATA+AGG | - | chr2_2:18810092-18810111 | Msa0242570:CDS | 15.0% |
| !! | TGAAATAAATCTTATTGATA+AGG | + | chr2_2:18809753-18809772 | None:intergenic | 15.0% |
| !! | TAAGATTTATTTCAAAAATG+AGG | - | chr2_2:18809759-18809778 | Msa0242570:intron | 15.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr2_2:18809931-18809950 | Msa0242570:CDS | 15.0% |
| !!! | ATTTTATGTGCAATATAATA+AGG | - | chr2_2:18810092-18810111 | Msa0242570:CDS | 15.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr2_2:18809237-18809256 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr2_2:18809235-18809254 | Msa0242570:CDS | 20.0% |
| !!! | TTTTTAGTATAACTTACCAT+TGG | + | chr2_2:18809722-18809741 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr2_2:18809904-18809923 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr2_2:18810123-18810142 | None:intergenic | 20.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr2_2:18809237-18809256 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr2_2:18809235-18809254 | Msa0242570:CDS | 20.0% |
| !!! | TTTTTAGTATAACTTACCAT+TGG | + | chr2_2:18809722-18809741 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr2_2:18809904-18809923 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr2_2:18810123-18810142 | None:intergenic | 20.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr2_2:18809312-18809331 | Msa0242570:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr2_2:18809313-18809332 | Msa0242570:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr2_2:18809597-18809616 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr2_2:18809598-18809617 | None:intergenic | 25.0% |
| ! | AAATCTTATTGATAAGGAGA+AGG | + | chr2_2:18809747-18809766 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr2_2:18809822-18809841 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr2_2:18809971-18809990 | Msa0242570:CDS | 25.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr2_2:18809312-18809331 | Msa0242570:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr2_2:18809313-18809332 | Msa0242570:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr2_2:18809597-18809616 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr2_2:18809598-18809617 | None:intergenic | 25.0% |
| ! | AAATCTTATTGATAAGGAGA+AGG | + | chr2_2:18809747-18809766 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr2_2:18809822-18809841 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr2_2:18809971-18809990 | Msa0242570:CDS | 25.0% |
| ACTCTACAAATTAACAAGCA+AGG | - | chr2_2:18809302-18809321 | Msa0242570:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr2_2:18809380-18809399 | Msa0242570:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr2_2:18809470-18809489 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr2_2:18810251-18810270 | Msa0242570:CDS | 30.0% | |
| ACTCTACAAATTAACAAGCA+AGG | - | chr2_2:18809302-18809321 | Msa0242570:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr2_2:18809380-18809399 | Msa0242570:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr2_2:18809470-18809489 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr2_2:18810251-18810270 | Msa0242570:CDS | 30.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr2_2:18809269-18809288 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr2_2:18809289-18809308 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr2_2:18809352-18809371 | Msa0242570:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr2_2:18809440-18809459 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr2_2:18809443-18809462 | Msa0242570:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr2_2:18809471-18809490 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr2_2:18809666-18809685 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr2_2:18809667-18809686 | None:intergenic | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr2_2:18809832-18809851 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr2_2:18810146-18810165 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr2_2:18810147-18810166 | None:intergenic | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr2_2:18810204-18810223 | Msa0242570:CDS | 35.0% | |
| TTGAGAAAGAATATAGGTGC+CGG | - | chr2_2:18810210-18810229 | Msa0242570:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr2_2:18810250-18810269 | Msa0242570:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr2_2:18810261-18810280 | Msa0242570:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr2_2:18810319-18810338 | Msa0242570:intron | 35.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr2_2:18809269-18809288 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr2_2:18809289-18809308 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr2_2:18809352-18809371 | Msa0242570:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr2_2:18809440-18809459 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr2_2:18809443-18809462 | Msa0242570:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr2_2:18809471-18809490 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr2_2:18809666-18809685 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr2_2:18809667-18809686 | None:intergenic | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr2_2:18809832-18809851 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr2_2:18810146-18810165 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr2_2:18810147-18810166 | None:intergenic | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr2_2:18810204-18810223 | Msa0242570:CDS | 35.0% | |
| TTGAGAAAGAATATAGGTGC+CGG | - | chr2_2:18810210-18810229 | Msa0242570:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr2_2:18810250-18810269 | Msa0242570:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr2_2:18810261-18810280 | Msa0242570:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr2_2:18810319-18810338 | Msa0242570:intron | 35.0% | |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr2_2:18809250-18809269 | Msa0242570:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr2_2:18809323-18809342 | Msa0242570:CDS | 40.0% | |
| TTTATTAGGGATCACGATGG+CGG | - | chr2_2:18809326-18809345 | Msa0242570:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr2_2:18809364-18809383 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr2_2:18809395-18809414 | Msa0242570:CDS | 40.0% | |
| GCCTTAATTGCTGGATTGTT+TGG | - | chr2_2:18809404-18809423 | Msa0242570:CDS | 40.0% | |
| GCCAAACAATCCAGCAATTA+AGG | + | chr2_2:18809408-18809427 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr2_2:18809522-18809541 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr2_2:18809620-18809639 | Msa0242570:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr2_2:18809665-18809684 | None:intergenic | 40.0% | |
| !! | GCAATTTGTTTCTGCTGCTA+TGG | - | chr2_2:18809676-18809695 | Msa0242570:intron | 40.0% |
| GTCTGTTTATGGACAACCAA+TGG | - | chr2_2:18809703-18809722 | Msa0242570:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr2_2:18809829-18809848 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr2_2:18809827-18809846 | Msa0242570:intron | 40.0% |
| ! | TATTGACTGTGCCAAGAAAG+TGG | - | chr2_2:18810165-18810184 | Msa0242570:CDS | 40.0% |
| ACCAAGATCATCCACTTTCT+TGG | + | chr2_2:18810179-18810198 | None:intergenic | 40.0% | |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr2_2:18810257-18810276 | Msa0242570:CDS | 40.0% | |
| ACATCCACAAACAATGCTGT+AGG | + | chr2_2:18810353-18810372 | None:intergenic | 40.0% | |
| TACAGCATTGTTTGTGGATG+TGG | - | chr2_2:18810352-18810371 | Msa0242570:intron | 40.0% | |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr2_2:18809250-18809269 | Msa0242570:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr2_2:18809323-18809342 | Msa0242570:CDS | 40.0% | |
| TTTATTAGGGATCACGATGG+CGG | - | chr2_2:18809326-18809345 | Msa0242570:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr2_2:18809364-18809383 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr2_2:18809395-18809414 | Msa0242570:CDS | 40.0% | |
| GCCTTAATTGCTGGATTGTT+TGG | - | chr2_2:18809404-18809423 | Msa0242570:CDS | 40.0% | |
| GCCAAACAATCCAGCAATTA+AGG | + | chr2_2:18809408-18809427 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr2_2:18809522-18809541 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr2_2:18809620-18809639 | Msa0242570:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr2_2:18809665-18809684 | None:intergenic | 40.0% | |
| !! | GCAATTTGTTTCTGCTGCTA+TGG | - | chr2_2:18809676-18809695 | Msa0242570:intron | 40.0% |
| GTCTGTTTATGGACAACCAA+TGG | - | chr2_2:18809703-18809722 | Msa0242570:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr2_2:18809829-18809848 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr2_2:18809827-18809846 | Msa0242570:intron | 40.0% |
| ! | TATTGACTGTGCCAAGAAAG+TGG | - | chr2_2:18810165-18810184 | Msa0242570:CDS | 40.0% |
| ACCAAGATCATCCACTTTCT+TGG | + | chr2_2:18810179-18810198 | None:intergenic | 40.0% | |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr2_2:18810257-18810276 | Msa0242570:CDS | 40.0% | |
| ACATCCACAAACAATGCTGT+AGG | + | chr2_2:18810353-18810372 | None:intergenic | 40.0% | |
| TACAGCATTGTTTGTGGATG+TGG | - | chr2_2:18810352-18810371 | Msa0242570:intron | 40.0% | |
| ACAGTGTTACATACCTCTGC+CGG | + | chr2_2:18809177-18809196 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr2_2:18809362-18809381 | Msa0242570:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr2_2:18809475-18809494 | Msa0242570:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr2_2:18809494-18809513 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr2_2:18809495-18809514 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr2_2:18809508-18809527 | Msa0242570:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr2_2:18809512-18809531 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr2_2:18809634-18809653 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr2_2:18809634-18809653 | Msa0242570:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr2_2:18809664-18809683 | None:intergenic | 45.0% | |
| !! | TTGTTTCTGCTGCTATGGCT+CGG | - | chr2_2:18809681-18809700 | Msa0242570:intron | 45.0% |
| CAGCTCACTATGTCACATCT+TGG | + | chr2_2:18810024-18810043 | None:intergenic | 45.0% | |
| GCCAAGAAAGTGGATGATCT+TGG | - | chr2_2:18810175-18810194 | Msa0242570:CDS | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr2_2:18810184-18810203 | Msa0242570:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr2_2:18810187-18810206 | Msa0242570:CDS | 45.0% | |
| AAACACGACTGAACGGAACA+AGG | - | chr2_2:18810235-18810254 | Msa0242570:CDS | 45.0% | |
| AACACGACTGAACGGAACAA+GGG | - | chr2_2:18810236-18810255 | Msa0242570:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr2_2:18810310-18810329 | None:intergenic | 45.0% | |
| CCACAAACAATGCTGTAGGA+GGG | + | chr2_2:18810349-18810368 | None:intergenic | 45.0% | |
| TCCACAAACAATGCTGTAGG+AGG | + | chr2_2:18810350-18810369 | None:intergenic | 45.0% | |
| ACAGTGTTACATACCTCTGC+CGG | + | chr2_2:18809177-18809196 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr2_2:18809362-18809381 | Msa0242570:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr2_2:18809475-18809494 | Msa0242570:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr2_2:18809494-18809513 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr2_2:18809495-18809514 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr2_2:18809508-18809527 | Msa0242570:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr2_2:18809512-18809531 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr2_2:18809634-18809653 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr2_2:18809634-18809653 | Msa0242570:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr2_2:18809664-18809683 | None:intergenic | 45.0% | |
| !! | TTGTTTCTGCTGCTATGGCT+CGG | - | chr2_2:18809681-18809700 | Msa0242570:intron | 45.0% |
| CAGCTCACTATGTCACATCT+TGG | + | chr2_2:18810024-18810043 | None:intergenic | 45.0% | |
| GCCAAGAAAGTGGATGATCT+TGG | - | chr2_2:18810175-18810194 | Msa0242570:CDS | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr2_2:18810184-18810203 | Msa0242570:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr2_2:18810187-18810206 | Msa0242570:CDS | 45.0% | |
| AAACACGACTGAACGGAACA+AGG | - | chr2_2:18810235-18810254 | Msa0242570:CDS | 45.0% | |
| AACACGACTGAACGGAACAA+GGG | - | chr2_2:18810236-18810255 | Msa0242570:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr2_2:18810310-18810329 | None:intergenic | 45.0% | |
| CCACAAACAATGCTGTAGGA+GGG | + | chr2_2:18810349-18810368 | None:intergenic | 45.0% | |
| TCCACAAACAATGCTGTAGG+AGG | + | chr2_2:18810350-18810369 | None:intergenic | 45.0% | |
| CAGTGTTACATACCTCTGCC+GGG | + | chr2_2:18809176-18809195 | None:intergenic | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr2_2:18809492-18809511 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr2_2:18809493-18809512 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr2_2:18809550-18809569 | Msa0242570:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr2_2:18809692-18809711 | Msa0242570:intron | 50.0% |
| TCCGTTCAGTCGTGTTTAGC+CGG | + | chr2_2:18810232-18810251 | None:intergenic | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr2_2:18810296-18810315 | Msa0242570:intron | 50.0% | |
| CCCTCCTACAGCATTGTTTG+TGG | - | chr2_2:18810346-18810365 | Msa0242570:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr2_2:18810360-18810379 | Msa0242570:intron | 50.0% | |
| CAGTGTTACATACCTCTGCC+GGG | + | chr2_2:18809176-18809195 | None:intergenic | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr2_2:18809492-18809511 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr2_2:18809493-18809512 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr2_2:18809550-18809569 | Msa0242570:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr2_2:18809692-18809711 | Msa0242570:intron | 50.0% |
| TCCGTTCAGTCGTGTTTAGC+CGG | + | chr2_2:18810232-18810251 | None:intergenic | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr2_2:18810296-18810315 | Msa0242570:intron | 50.0% | |
| CCCTCCTACAGCATTGTTTG+TGG | - | chr2_2:18810346-18810365 | Msa0242570:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr2_2:18810360-18810379 | Msa0242570:intron | 50.0% | |
| ! | ATTAGGGATCACGATGGCGG+AGG | - | chr2_2:18809329-18809348 | Msa0242570:CDS | 55.0% |
| !! | TTAGGGATCACGATGGCGGA+GGG | - | chr2_2:18809330-18809349 | Msa0242570:CDS | 55.0% |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr2_2:18809553-18809572 | Msa0242570:intron | 55.0% | |
| GCCGGCTAAACACGACTGAA+CGG | - | chr2_2:18810228-18810247 | Msa0242570:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr2_2:18810295-18810314 | Msa0242570:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr2_2:18810304-18810323 | None:intergenic | 55.0% | |
| ! | ATTAGGGATCACGATGGCGG+AGG | - | chr2_2:18809329-18809348 | Msa0242570:CDS | 55.0% |
| !! | TTAGGGATCACGATGGCGGA+GGG | - | chr2_2:18809330-18809349 | Msa0242570:CDS | 55.0% |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr2_2:18809553-18809572 | Msa0242570:intron | 55.0% | |
| GCCGGCTAAACACGACTGAA+CGG | - | chr2_2:18810228-18810247 | Msa0242570:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr2_2:18810295-18810314 | Msa0242570:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr2_2:18810304-18810323 | None:intergenic | 55.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr2_2:18809560-18809579 | None:intergenic | 60.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr2_2:18809560-18809579 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 18809165 | 18810397 | 18809165 | ID=Msa0242570;Name=Msa0242570 |
| chr2_2 | mRNA | 18809165 | 18810397 | 18809165 | ID=Msa0242570-mRNA-1;Parent=Msa0242570;Name=Msa0242570-mRNA-1;_AED=0.56;_eAED=0.56;_QI=0|0|0|0.66|1|1|3|0|248 |
| chr2_2 | exon | 18810380 | 18810397 | 18810380 | ID=Msa0242570-mRNA-1:exon:7709;Parent=Msa0242570-mRNA-1 |
| chr2_2 | exon | 18809838 | 18810305 | 18809838 | ID=Msa0242570-mRNA-1:exon:7708;Parent=Msa0242570-mRNA-1 |
| chr2_2 | exon | 18809165 | 18809425 | 18809165 | ID=Msa0242570-mRNA-1:exon:7707;Parent=Msa0242570-mRNA-1 |
| chr2_2 | CDS | 18810380 | 18810397 | 18810380 | ID=Msa0242570-mRNA-1:cds;Parent=Msa0242570-mRNA-1 |
| chr2_2 | CDS | 18809838 | 18810305 | 18809838 | ID=Msa0242570-mRNA-1:cds;Parent=Msa0242570-mRNA-1 |
| chr2_2 | CDS | 18809165 | 18809425 | 18809165 | ID=Msa0242570-mRNA-1:cds;Parent=Msa0242570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
