AlfalfaGEDB | Msa0242660

M. sativa cultivar zhongmu-4 / Msa0242660

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242660	XP_003594816.1	96.700	606	19	1	1	605	1	606	0.0	1217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242660	sp\|Q9ZWJ9\|ARR2_ARATH	50.224	669	215	24	25	600	21	664	0.0	532

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242660	G7IMX2	96.700	606	19	1	1	605	1	606	0.0	1217

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TFs/TRs:

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Gene ID	Type	Classification
Msa0242660	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242660	MtrunA17_Chr2g0294911	96.700	606	19	1	1	605	1	606	0.0	1217
Msa0242660	MtrunA17_Chr4g0067981	62.225	683	171	14	1	600	2	680	0.0	762
Msa0242660	MtrunA17_Chr1g0161431	59.091	308	117	3	25	325	8	313	1.93e-115	357
Msa0242660	MtrunA17_Chr3g0137101	48.189	359	151	7	26	356	6	357	1.97e-101	321
Msa0242660	MtrunA17_Chr3g0123131	58.462	260	92	3	28	277	13	266	2.79e-95	303
Msa0242660	MtrunA17_Chr8g0376881	57.874	254	105	1	26	277	23	276	2.22e-92	295
Msa0242660	MtrunA17_Chr1g0149841	44.444	378	174	9	24	385	1	358	3.57e-92	293
Msa0242660	MtrunA17_Chr7g0275891	49.827	289	120	5	24	291	1	285	6.60e-85	269
Msa0242660	MtrunA17_Chr2g0304841	42.973	370	178	7	24	363	14	380	3.34e-84	277
Msa0242660	MtrunA17_Chr4g0074401	42.703	370	172	6	17	368	6	353	2.19e-82	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242660	AT3G16857.2	46.999	683	241	21	21	600	26	690	2.14e-174	511
Msa0242660	AT3G16857.1	46.364	660	234	20	21	577	26	668	5.21e-163	481
Msa0242660	AT3G16857.3	44.671	638	232	21	66	600	1	620	1.13e-143	430
Msa0242660	AT2G01760.1	46.053	380	159	9	24	373	3	366	9.03e-96	298
Msa0242660	AT2G25180.1	59.924	262	93	3	26	281	11	266	9.05e-96	305
Msa0242660	AT2G01760.2	42.892	408	159	10	24	373	3	394	1.49e-89	283
Msa0242660	AT4G31920.1	47.143	350	142	8	24	354	9	334	1.56e-87	283
Msa0242660	AT1G67710.1	49.702	336	128	9	29	333	8	333	5.53e-86	278
Msa0242660	AT5G58080.1	46.875	320	128	7	26	324	12	310	6.33e-79	262
Msa0242660	AT2G01760.3	42.271	317	137	9	87	373	1	301	2.57e-62	209

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Find 152 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGCTTACTAATAAC+AGG	0.383212	2_2:+18971987	None:intergenic
AAACCGGTGAACTTTCTTCA+CGG	0.535622	2_2:-18970524	Msa0242660:CDS
AAACGTTGCCAGTCATCTTC+AGG	0.402049	2_2:-18971174	Msa0242660:intron
AAAGATCTGAAGCAATCTGG+TGG	0.628824	2_2:-18971732	Msa0242660:CDS
AACCTCAGCTCTCTTGCATT+TGG	0.403620	2_2:+18972127	None:intergenic
AAGAAAATTAATTGGTTTGT+GGG	0.341269	2_2:+18972795	None:intergenic
AAGAAGATGAAGCAGATGAT+AGG	0.337750	2_2:-18971614	Msa0242660:CDS
AAGATCAATTTCATTTACAG+AGG	0.595752	2_2:+18970676	None:intergenic
AAGATTGAAGACCTTCATAA+AGG	0.449070	2_2:+18972492	None:intergenic
AAGCCCCTGGTTGACGCAGA+TGG	0.544982	2_2:-18970399	Msa0242660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCAAGTTACAACTGTTATA+AGG	-	chr2_2:18969475-18969494	Msa0242660:three_prime_UTR	30.0%
AAGATTGAAGACCTTCATAA+AGG	+	chr2_2:18969831-18969850	None:intergenic	30.0%
GCAAGGACATAACATAATTA+AGG	+	chr2_2:18970835-18970854	None:intergenic	30.0%
GAATCACAAGGATTATATCT+TGG	+	chr2_2:18970934-18970953	None:intergenic	30.0%
AACAATCTTGTAGAATCACA+AGG	+	chr2_2:18970946-18970965	None:intergenic	30.0%
GGTCATATCTCATATAACAT+GGG	+	chr2_2:18971224-18971243	None:intergenic	30.0%
AGGTCATATCTCATATAACA+TGG	+	chr2_2:18971225-18971244	None:intergenic	30.0%
ACTGTAACTCTTAACATTCA+AGG	+	chr2_2:18971463-18971482	None:intergenic	30.0%
GAGAACTCAAAACTAAGATT+TGG	-	chr2_2:18971742-18971761	Msa0242660:CDS	30.0%
TCAAAACTAAGATTTGGAGA+TGG	-	chr2_2:18971748-18971767	Msa0242660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	18969462	18972880	18969462	ID=Msa0242660;Name=Msa0242660
chr2_2	mRNA	18969462	18972880	18969462	ID=Msa0242660-mRNA-1;Parent=Msa0242660;Name=Msa0242660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=205\|1\|1\|1\|1\|1\|6\|199\|605
chr2_2	exon	18969462	18969747	18969462	ID=Msa0242660-mRNA-1:exon:7745;Parent=Msa0242660-mRNA-1
chr2_2	exon	18969845	18970798	18969845	ID=Msa0242660-mRNA-1:exon:7744;Parent=Msa0242660-mRNA-1
chr2_2	exon	18971175	18971251	18971175	ID=Msa0242660-mRNA-1:exon:7743;Parent=Msa0242660-mRNA-1
chr2_2	exon	18971520	18971894	18971520	ID=Msa0242660-mRNA-1:exon:7742;Parent=Msa0242660-mRNA-1
chr2_2	exon	18972000	18972152	18972000	ID=Msa0242660-mRNA-1:exon:7741;Parent=Msa0242660-mRNA-1
chr2_2	exon	18972504	18972880	18972504	ID=Msa0242660-mRNA-1:exon:7740;Parent=Msa0242660-mRNA-1
chr2_2	five_prime_UTR	18972676	18972880	18972676	ID=Msa0242660-mRNA-1:five_prime_utr;Parent=Msa0242660-mRNA-1
chr2_2	CDS	18972504	18972675	18972504	ID=Msa0242660-mRNA-1:cds;Parent=Msa0242660-mRNA-1
chr2_2	CDS	18972000	18972152	18972000	ID=Msa0242660-mRNA-1:cds;Parent=Msa0242660-mRNA-1
chr2_2	CDS	18971520	18971894	18971520	ID=Msa0242660-mRNA-1:cds;Parent=Msa0242660-mRNA-1
chr2_2	CDS	18971175	18971251	18971175	ID=Msa0242660-mRNA-1:cds;Parent=Msa0242660-mRNA-1
chr2_2	CDS	18969845	18970798	18969845	ID=Msa0242660-mRNA-1:cds;Parent=Msa0242660-mRNA-1
chr2_2	CDS	18969661	18969747	18969661	ID=Msa0242660-mRNA-1:cds;Parent=Msa0242660-mRNA-1
chr2_2	three_prime_UTR	18969462	18969660	18969462	ID=Msa0242660-mRNA-1:three_prime_utr;Parent=Msa0242660-mRNA-1

Gene Sequence

>Msa0242660

ATGAAACTCAACAACAACAACAAAATTTCCATGTCAACCTCAACTTCACCATCAAACTCCGGCAACCTTATCTCCGACCAGTTTCCGGCGGGCCTCCGTGTACTTGTTGTTGATGATGACCCTACTTGCCTCATGATCCTTGAAAGAATGCTCCGTTTTTGCCTTTATGAAGTTACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAACGGGTTCGACATTGTTTTAAGCGACGTGCATATGCCTGATATGGATGGATTCAAACTTTTGGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAACGTGGTAATGAAAGGTGTGACACACGGTGCTTGTGATTATCTAATCAAACCTGTGCGAATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAATAACTGGAAAGATCTGAAGCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAATTGTGTCCACTGATGCTAATTACTCATCTTCAACGAATGAAGGCAAGAGCTCAAAGAAGAGGAGGGATGAAGAAGATGAAGCAGATGATAGGGATGATTGTTCGACGTCAAAGAAGCCTCGAGTTGTTTGGTCTATTGAGCTTCATCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCCAGTCATCTTCAGAAATACCGTTTGTATCTTCGAAGGTTGAGCGGAGTTTCCCAGCAGCAAAGTAACTTGAATAACTCCTTCATGAGTACGCAAGAGTCAATATTTGGAGGAACCTCTGTAAATGAAATTGATCTTCAAACCCTTTCAGCTTCTGGCCAGTTCTCGGCGCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTACAGTCCTGAGAACTCAAAACTAAGATTTGGAGATGGGCAACTGCAACATATGAGCAGCAGTAAACCGGTGAACTTTCTTCACGGAATCCCTATCAACATTGAGCCGAAGCAGTTTGCCAATTTTCACCAGTCTGCTCAATCCTTTGGCAGCGCAAATATGCGGGTCAATGCTTCTGCTGCAAAGAGAAGCCCCTGGTTGACGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAATGAGAATACAAATTCTCATGCTACAAGGTTTCCATCATCTTTAATGCAACCTACAGGACCAAATGGAATATCAGTCAATAGTTTCCCTCTCAGATGCACTCCGGGTATATCCAGTAGCAGTATAAAAGGTGCATTTCATGCGGAAGCTACTTCGGGAATTAAAGGATTAGGGGGATTTAGTTATGATGTTTATAATGAACTCCATCAGAAGTCCAATGATTGGGGATTAGCAAATACAGGCCTGACATATGATGCTTCTCAACATGCAAATCCTTTACAAGGAAACATTGATGTCTTGCCATCGATTTCAGGCCATCGTGGTTTTTCCTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAGGTGATCACCAAAATGTTGGTCAACACCTCATTACACCTTTTGTTGACAATTCATTACGGGGCAAGAGTGAAAGAATTCCAGGTACAAACATCGAGATTAACCCCTTCTCTGATCAAAGTCAAGAGGATCTCATGAGTGTGTTTCTGAACCAGCACAAAGGCGTTGGACAAGTTGATAATGAGTTTGACTTTGATGGGTATTCCGCAGACAACATTCCAGTTTATAACAGATCCTGTTAG

Protein sequence

>Msa0242660

MKLNNNNKISMSTSTSPSNSGNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNNWKDLKQSGGLDERDREKIVSTDANYSSSTNEGKSSKKRRDEEDEADDRDDCSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNSFMSTQESIFGGTSVNEIDLQTLSASGQFSAQSLAKLQAAGLYSPENSKLRFGDGQLQHMSSSKPVNFLHGIPINIEPKQFANFHQSAQSFGSANMRVNASAAKRSPWLTQMAQSQPRGQMLNENTNSHATRFPSSLMQPTGPNGISVNSFPLRCTPGISSSSIKGAFHAEATSGIKGLGGFSYDVYNELHQKSNDWGLANTGLTYDASQHANPLQGNIDVLPSISGHRGFSSIQQTRQNRDGMSQGDHQNVGQHLITPFVDNSLRGKSERIPGTNIEINPFSDQSQEDLMSVFLNQHKGVGQVDNEFDFDGYSADNIPVYNRSC*