Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243020 | KAG2396852.1 | 53.886 | 386 | 99 | 5 | 118 | 436 | 12 | 385 | 5.08e-125 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243020 | sp|Q9LKR4|FRS10_ARATH | 45.055 | 182 | 84 | 5 | 25 | 201 | 28 | 198 | 5.12e-36 | 144 |
| Msa0243020 | sp|Q9LKR4|FRS10_ARATH | 31.579 | 190 | 84 | 4 | 198 | 347 | 491 | 674 | 3.66e-19 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243020 | A0A2K3N8Z5 | 65.366 | 205 | 67 | 2 | 1 | 201 | 1 | 205 | 1.47e-80 | 272 |
| Msa0243020 | A0A2K3N8Z5 | 68.231 | 277 | 51 | 3 | 199 | 442 | 393 | 665 | 1.98e-118 | 370 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0243020 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243020 | MtrunA17_Chr1g0198761 | 65.141 | 284 | 63 | 2 | 195 | 445 | 479 | 759 | 1.99e-117 | 360 |
| Msa0243020 | MtrunA17_Chr1g0198761 | 60.000 | 205 | 70 | 3 | 1 | 201 | 1 | 197 | 2.39e-69 | 234 |
| Msa0243020 | MtrunA17_Chr5g0431001 | 61.611 | 211 | 71 | 2 | 1 | 201 | 1 | 211 | 6.73e-79 | 253 |
| Msa0243020 | MtrunA17_Chr5g0430921 | 79.545 | 88 | 15 | 1 | 349 | 436 | 1 | 85 | 7.83e-42 | 143 |
| Msa0243020 | MtrunA17_Chr2g0276841 | 41.176 | 187 | 93 | 4 | 19 | 201 | 42 | 215 | 9.68e-35 | 137 |
| Msa0243020 | MtrunA17_Chr2g0276841 | 31.667 | 240 | 122 | 5 | 149 | 352 | 454 | 687 | 2.70e-28 | 118 |
| Msa0243020 | MtrunA17_Chr2g0290391 | 46.405 | 153 | 70 | 3 | 53 | 201 | 50 | 194 | 3.06e-31 | 127 |
| Msa0243020 | MtrunA17_Chr2g0290391 | 38.220 | 191 | 69 | 5 | 195 | 346 | 486 | 666 | 2.11e-22 | 100 |
| Msa0243020 | MtrunA17_Chr2g0294841 | 30.216 | 278 | 134 | 7 | 195 | 419 | 475 | 745 | 6.55e-30 | 123 |
| Msa0243020 | MtrunA17_Chr2g0294841 | 38.286 | 175 | 95 | 5 | 34 | 201 | 25 | 193 | 2.04e-25 | 109 |
| Msa0243020 | MtrunA17_Chr6g0458391 | 33.333 | 132 | 81 | 2 | 46 | 177 | 217 | 341 | 3.51e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243020 | AT5G28530.4 | 45.055 | 182 | 84 | 5 | 25 | 201 | 28 | 198 | 2.48e-37 | 144 |
| Msa0243020 | AT5G28530.4 | 31.579 | 190 | 84 | 4 | 198 | 347 | 428 | 611 | 5.01e-20 | 93.2 |
| Msa0243020 | AT5G28530.5 | 45.055 | 182 | 84 | 5 | 25 | 201 | 28 | 198 | 3.16e-37 | 144 |
| Msa0243020 | AT5G28530.5 | 34.524 | 168 | 64 | 4 | 220 | 347 | 446 | 607 | 1.30e-19 | 92.0 |
| Msa0243020 | AT5G28530.1 | 45.055 | 182 | 84 | 5 | 25 | 201 | 28 | 198 | 5.20e-37 | 144 |
| Msa0243020 | AT5G28530.1 | 31.579 | 190 | 84 | 4 | 198 | 347 | 491 | 674 | 3.72e-20 | 94.0 |
| Msa0243020 | AT5G28530.3 | 45.055 | 182 | 84 | 5 | 25 | 201 | 28 | 198 | 7.19e-37 | 143 |
| Msa0243020 | AT5G28530.3 | 34.524 | 168 | 64 | 4 | 220 | 347 | 509 | 670 | 1.18e-19 | 92.4 |
| Msa0243020 | AT5G28530.2 | 45.055 | 182 | 84 | 5 | 25 | 201 | 28 | 198 | 7.19e-37 | 143 |
| Msa0243020 | AT5G28530.2 | 34.524 | 168 | 64 | 4 | 220 | 347 | 509 | 670 | 1.18e-19 | 92.4 |
| Msa0243020 | AT1G10240.2 | 46.835 | 158 | 74 | 3 | 48 | 201 | 42 | 193 | 5.15e-35 | 138 |
| Msa0243020 | AT1G10240.2 | 35.079 | 191 | 91 | 2 | 195 | 352 | 475 | 665 | 7.72e-27 | 114 |
| Msa0243020 | AT1G10240.1 | 46.835 | 158 | 74 | 3 | 48 | 201 | 42 | 193 | 5.15e-35 | 138 |
| Msa0243020 | AT1G10240.1 | 35.079 | 191 | 91 | 2 | 195 | 352 | 475 | 665 | 7.72e-27 | 114 |
| Msa0243020 | AT3G59470.3 | 36.364 | 110 | 62 | 3 | 54 | 163 | 70 | 171 | 5.40e-13 | 69.3 |
| Msa0243020 | AT3G59470.1 | 36.364 | 110 | 62 | 3 | 54 | 163 | 70 | 171 | 5.40e-13 | 69.3 |
| Msa0243020 | AT3G59470.2 | 36.364 | 110 | 62 | 3 | 54 | 163 | 82 | 183 | 6.93e-13 | 68.9 |
Find 68 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAATTTGATTTATT+TGG | 0.093166 | 2_2:+19613888 | Msa0243020:CDS |
| ACATCATAACCATCATTATT+TGG | 0.153794 | 2_2:-19613931 | None:intergenic |
| TTGACTATGTGACTGCATTT+TGG | 0.212419 | 2_2:-19613724 | None:intergenic |
| ACAATCAGAACTTACTTATT+AGG | 0.237831 | 2_2:-19614132 | None:intergenic |
| ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 2_2:-19613880 | None:intergenic |
| AGTACCATAATTCTCTAATT+AGG | 0.289351 | 2_2:+19613378 | Msa0243020:CDS |
| ACATATGAAGATGATGAATA+TGG | 0.290862 | 2_2:+19612731 | Msa0243020:CDS |
| TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 2_2:-19613382 | None:intergenic |
| TAGTTCCAGGCTGAGGTTCT+TGG | 0.304969 | 2_2:-19612781 | None:intergenic |
| GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 2_2:-19614025 | None:intergenic |
| TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 2_2:-19613410 | None:intergenic |
| ATGATTGGTTCCGCCGCAAT+TGG | 0.338559 | 2_2:-19614052 | None:intergenic |
| GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 2_2:-19614003 | None:intergenic |
| CACATAGTCAAATGCAATAA+TGG | 0.343756 | 2_2:+19613736 | Msa0243020:CDS |
| AAATTCCTCCGACAGATAAA+AGG | 0.354413 | 2_2:+19613853 | Msa0243020:CDS |
| CTAAAGGCTTTGAAATAAAG+TGG | 0.369462 | 2_2:+19613089 | Msa0243020:CDS |
| TCAGTCTCTAATTCGATGTT+TGG | 0.382120 | 2_2:+19613774 | Msa0243020:CDS |
| GAACTAGTACTGTTGATGAT+TGG | 0.400395 | 2_2:+19612798 | Msa0243020:CDS |
| AACTAGTACTGTTGATGATT+GGG | 0.417098 | 2_2:+19612799 | Msa0243020:CDS |
| TCATCAACAGTACTAGTTCC+AGG | 0.424449 | 2_2:-19612794 | None:intergenic |
| AAATACATTGTAAAATTCAT+AGG | 0.433492 | 2_2:-19612861 | None:intergenic |
| TTTGGAACATCGGGTACATT+GGG | 0.437206 | 2_2:-19613913 | None:intergenic |
| GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 2_2:+19613073 | Msa0243020:CDS |
| CCATGAGTTATTAGATGATA+AGG | 0.455510 | 2_2:+19613141 | Msa0243020:CDS |
| CCATCATTATTTGGAACATC+GGG | 0.457944 | 2_2:-19613922 | None:intergenic |
| ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 2_2:-19614067 | None:intergenic |
| CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 2_2:-19613691 | None:intergenic |
| TGATTGGTTCCGCCGCAATT+GGG | 0.478500 | 2_2:-19614051 | None:intergenic |
| ATTTGGAACATCGGGTACAT+TGG | 0.482649 | 2_2:-19613914 | None:intergenic |
| TAAGAAATAATGCTAGTGAT+TGG | 0.490791 | 2_2:+19612678 | Msa0243020:CDS |
| TGGATTAACTCAAACGCATA+TGG | 0.491586 | 2_2:-19613443 | None:intergenic |
| AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 2_2:+19613973 | Msa0243020:CDS |
| TGGATAGGATCACAAAGGGT+TGG | 0.496334 | 2_2:+19614219 | Msa0243020:intron |
| TAGTTGTAGCGCAAAGTTGT+TGG | 0.498154 | 2_2:+19613063 | Msa0243020:CDS |
| CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 2_2:+19613988 | Msa0243020:CDS |
| GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 2_2:+19612941 | Msa0243020:CDS |
| ATAATTGTTACCTGTCTGAA+TGG | 0.504420 | 2_2:-19613498 | None:intergenic |
| ACCATCATTATTTGGAACAT+CGG | 0.512682 | 2_2:-19613923 | None:intergenic |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 2_2:+19612977 | Msa0243020:CDS |
| AAATATGCTGCCATTCAGAC+AGG | 0.519399 | 2_2:+19613488 | Msa0243020:CDS |
| CCCGATGTTCCAAATAATGA+TGG | 0.520874 | 2_2:+19613922 | Msa0243020:CDS |
| CATCTAATAACTCATGGTTG+TGG | 0.528510 | 2_2:-19613135 | None:intergenic |
| TAGACAATTCAATCTCATGT+TGG | 0.528559 | 2_2:-19613463 | None:intergenic |
| AAAGGAAACGGAAATCTTCA+CGG | 0.530189 | 2_2:+19613038 | Msa0243020:CDS |
| CCAGGCTGAGGTTCTTGGTG+TGG | 0.530208 | 2_2:-19612776 | None:intergenic |
| AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 2_2:+19613980 | Msa0243020:CDS |
| TAAAGGCTTTGAAATAAAGT+GGG | 0.537005 | 2_2:+19613090 | Msa0243020:CDS |
| CCTTATCATCTAATAACTCA+TGG | 0.545462 | 2_2:-19613141 | None:intergenic |
| CCACACCAAGAACCTCAGCC+TGG | 0.549756 | 2_2:+19612776 | Msa0243020:CDS |
| CGTTGTCACGTTCCCAATTG+CGG | 0.556435 | 2_2:+19614039 | Msa0243020:CDS |
| TTCTTGGATAGGATCACAAA+GGG | 0.557354 | 2_2:+19614215 | Msa0243020:intron |
| ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 2_2:-19613178 | None:intergenic |
| TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 2_2:+19613340 | Msa0243020:CDS |
| GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 2_2:+19613332 | Msa0243020:CDS |
| TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 2_2:+19613965 | Msa0243020:CDS |
| CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 2_2:+19613961 | Msa0243020:CDS |
| AATTGGGATGTTACGATAAG+CGG | 0.587373 | 2_2:-19613179 | None:intergenic |
| ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 2_2:+19613804 | Msa0243020:CDS |
| ACAGTACTAGTTCCAGGCTG+AGG | 0.603967 | 2_2:-19612788 | None:intergenic |
| ATTAAGGATTAATATGACAT+CGG | 0.612508 | 2_2:+19612652 | None:intergenic |
| AGGCTTTGAAATAAAGTGGG+TGG | 0.612596 | 2_2:+19613093 | Msa0243020:CDS |
| TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 2_2:+19613144 | Msa0243020:CDS |
| AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 2_2:+19613991 | Msa0243020:CDS |
| AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 2_2:+19613803 | Msa0243020:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 2_2:-19614120 | None:intergenic |
| GTTCTTGGATAGGATCACAA+AGG | 0.649286 | 2_2:+19614214 | Msa0243020:intron |
| GCGGAACCAATCATGACTCG+CGG | 0.676119 | 2_2:+19614061 | Msa0243020:CDS |
| TGTCACGTTCCCAATTGCGG+CGG | 0.677873 | 2_2:+19614042 | Msa0243020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAACTATTTGATTTTA+TGG | + | chr2_2:19614192-19614211 | Msa0243020:intron | 10.0% |
| !!! | TTATTAACTATTTGATTTTA+TGG | + | chr2_2:19614192-19614211 | Msa0243020:intron | 10.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr2_2:19612864-19612883 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | + | chr2_2:19613888-19613907 | Msa0243020:CDS | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | - | chr2_2:19614093-19614112 | None:intergenic | 15.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr2_2:19612864-19612883 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | + | chr2_2:19613888-19613907 | Msa0243020:CDS | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | - | chr2_2:19614093-19614112 | None:intergenic | 15.0% |
| !!! | TTAAAATTTTGTCCTTCAAA+AGG | - | chr2_2:19612827-19612846 | None:intergenic | 20.0% |
| !!! | ATATTATTGTTTTCAAAAGC+AGG | + | chr2_2:19613217-19613236 | Msa0243020:CDS | 20.0% |
| !!! | TTAAAATTTTGTCCTTCAAA+AGG | - | chr2_2:19612827-19612846 | None:intergenic | 20.0% |
| !!! | ATATTATTGTTTTCAAAAGC+AGG | + | chr2_2:19613217-19613236 | Msa0243020:CDS | 20.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr2_2:19612678-19612697 | Msa0243020:CDS | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr2_2:19612731-19612750 | Msa0243020:CDS | 25.0% |
| !!! | TGAAGGACAAAATTTTAACA+CGG | + | chr2_2:19612829-19612848 | Msa0243020:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr2_2:19612875-19612894 | Msa0243020:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr2_2:19612888-19612907 | Msa0243020:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr2_2:19613020-19613039 | Msa0243020:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | + | chr2_2:19613026-19613045 | Msa0243020:CDS | 25.0% |
| !!! | TAAAGGCTTTGAAATAAAGT+GGG | + | chr2_2:19613090-19613109 | Msa0243020:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr2_2:19613274-19613293 | Msa0243020:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | + | chr2_2:19613378-19613397 | Msa0243020:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | - | chr2_2:19613385-19613404 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | + | chr2_2:19613598-19613617 | Msa0243020:intron | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | - | chr2_2:19613678-19613697 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | + | chr2_2:19613803-19613822 | Msa0243020:CDS | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | + | chr2_2:19613804-19613823 | Msa0243020:CDS | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | - | chr2_2:19613934-19613953 | None:intergenic | 25.0% |
| ! | ACAATCAGAACTTACTTATT+AGG | - | chr2_2:19614135-19614154 | None:intergenic | 25.0% |
| !!! | CTATTTGATTTTATGGTTCT+TGG | + | chr2_2:19614199-19614218 | Msa0243020:intron | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr2_2:19612678-19612697 | Msa0243020:CDS | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr2_2:19612731-19612750 | Msa0243020:CDS | 25.0% |
| !!! | TGAAGGACAAAATTTTAACA+CGG | + | chr2_2:19612829-19612848 | Msa0243020:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr2_2:19612875-19612894 | Msa0243020:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr2_2:19612888-19612907 | Msa0243020:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr2_2:19613020-19613039 | Msa0243020:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | + | chr2_2:19613026-19613045 | Msa0243020:CDS | 25.0% |
| !!! | TAAAGGCTTTGAAATAAAGT+GGG | + | chr2_2:19613090-19613109 | Msa0243020:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr2_2:19613274-19613293 | Msa0243020:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | + | chr2_2:19613378-19613397 | Msa0243020:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | - | chr2_2:19613385-19613404 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | + | chr2_2:19613598-19613617 | Msa0243020:intron | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | - | chr2_2:19613678-19613697 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | + | chr2_2:19613803-19613822 | Msa0243020:CDS | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | + | chr2_2:19613804-19613823 | Msa0243020:CDS | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | - | chr2_2:19613934-19613953 | None:intergenic | 25.0% |
| ! | ACAATCAGAACTTACTTATT+AGG | - | chr2_2:19614135-19614154 | None:intergenic | 25.0% |
| !!! | CTATTTGATTTTATGGTTCT+TGG | + | chr2_2:19614199-19614218 | Msa0243020:intron | 25.0% |
| !! | AACTAGTACTGTTGATGATT+GGG | + | chr2_2:19612799-19612818 | Msa0243020:CDS | 30.0% |
| ! | TCTCTTTTATAAACTCCTGA+TGG | - | chr2_2:19612959-19612978 | None:intergenic | 30.0% |
| !! | CTAAAGGCTTTGAAATAAAG+TGG | + | chr2_2:19613089-19613108 | Msa0243020:CDS | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | - | chr2_2:19613144-19613163 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | + | chr2_2:19613141-19613160 | Msa0243020:CDS | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | + | chr2_2:19613144-19613163 | Msa0243020:CDS | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr2_2:19613198-19613217 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr2_2:19613199-19613218 | None:intergenic | 30.0% |
| !! | AACTTACCATTTTTGTGAGT+AGG | + | chr2_2:19613298-19613317 | Msa0243020:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | - | chr2_2:19613466-19613485 | None:intergenic | 30.0% | |
| ATAATTGTTACCTGTCTGAA+TGG | - | chr2_2:19613501-19613520 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr2_2:19613679-19613698 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr2_2:19613680-19613699 | Msa0243020:CDS | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | + | chr2_2:19613736-19613755 | Msa0243020:CDS | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | - | chr2_2:19613883-19613902 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | - | chr2_2:19613926-19613945 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | + | chr2_2:19613965-19613984 | Msa0243020:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | - | chr2_2:19614123-19614142 | None:intergenic | 30.0% | |
| ! | TGATTTTATGGTTCTTGGAT+AGG | + | chr2_2:19614204-19614223 | Msa0243020:intron | 30.0% |
| !! | AACTAGTACTGTTGATGATT+GGG | + | chr2_2:19612799-19612818 | Msa0243020:CDS | 30.0% |
| ! | TCTCTTTTATAAACTCCTGA+TGG | - | chr2_2:19612959-19612978 | None:intergenic | 30.0% |
| !! | CTAAAGGCTTTGAAATAAAG+TGG | + | chr2_2:19613089-19613108 | Msa0243020:CDS | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | - | chr2_2:19613144-19613163 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | + | chr2_2:19613141-19613160 | Msa0243020:CDS | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | + | chr2_2:19613144-19613163 | Msa0243020:CDS | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr2_2:19613198-19613217 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr2_2:19613199-19613218 | None:intergenic | 30.0% |
| !! | AACTTACCATTTTTGTGAGT+AGG | + | chr2_2:19613298-19613317 | Msa0243020:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | - | chr2_2:19613466-19613485 | None:intergenic | 30.0% | |
| ATAATTGTTACCTGTCTGAA+TGG | - | chr2_2:19613501-19613520 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr2_2:19613679-19613698 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr2_2:19613680-19613699 | Msa0243020:CDS | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | + | chr2_2:19613736-19613755 | Msa0243020:CDS | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | - | chr2_2:19613883-19613902 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | - | chr2_2:19613926-19613945 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | + | chr2_2:19613965-19613984 | Msa0243020:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | - | chr2_2:19614123-19614142 | None:intergenic | 30.0% | |
| ! | TGATTTTATGGTTCTTGGAT+AGG | + | chr2_2:19614204-19614223 | Msa0243020:intron | 30.0% |
| !! | GAACTAGTACTGTTGATGAT+TGG | + | chr2_2:19612798-19612817 | Msa0243020:CDS | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | + | chr2_2:19613038-19613057 | Msa0243020:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr2_2:19613073-19613092 | Msa0243020:CDS | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | - | chr2_2:19613138-19613157 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | - | chr2_2:19613182-19613201 | None:intergenic | 35.0% | |
| !! | TACCATTTTTGTGAGTAGGT+TGG | + | chr2_2:19613302-19613321 | Msa0243020:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | + | chr2_2:19613332-19613351 | Msa0243020:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | + | chr2_2:19613397-19613416 | Msa0243020:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | - | chr2_2:19613446-19613465 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | - | chr2_2:19613641-19613660 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | - | chr2_2:19613726-19613745 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | - | chr2_2:19613727-19613746 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr2_2:19613774-19613793 | Msa0243020:CDS | 35.0% | |
| AAATTCCTCCGACAGATAAA+AGG | + | chr2_2:19613853-19613872 | Msa0243020:CDS | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | - | chr2_2:19613925-19613944 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | - | chr2_2:19613964-19613983 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | + | chr2_2:19613961-19613980 | Msa0243020:CDS | 35.0% |
| TTCTTGGATAGGATCACAAA+GGG | + | chr2_2:19614215-19614234 | Msa0243020:intron | 35.0% | |
| !! | GAACTAGTACTGTTGATGAT+TGG | + | chr2_2:19612798-19612817 | Msa0243020:CDS | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | + | chr2_2:19613038-19613057 | Msa0243020:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr2_2:19613073-19613092 | Msa0243020:CDS | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | - | chr2_2:19613138-19613157 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | - | chr2_2:19613182-19613201 | None:intergenic | 35.0% | |
| !! | TACCATTTTTGTGAGTAGGT+TGG | + | chr2_2:19613302-19613321 | Msa0243020:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | + | chr2_2:19613332-19613351 | Msa0243020:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | + | chr2_2:19613397-19613416 | Msa0243020:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | - | chr2_2:19613446-19613465 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | - | chr2_2:19613641-19613660 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | - | chr2_2:19613726-19613745 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | - | chr2_2:19613727-19613746 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr2_2:19613774-19613793 | Msa0243020:CDS | 35.0% | |
| AAATTCCTCCGACAGATAAA+AGG | + | chr2_2:19613853-19613872 | Msa0243020:CDS | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | - | chr2_2:19613925-19613944 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | - | chr2_2:19613964-19613983 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | + | chr2_2:19613961-19613980 | Msa0243020:CDS | 35.0% |
| TTCTTGGATAGGATCACAAA+GGG | + | chr2_2:19614215-19614234 | Msa0243020:intron | 35.0% | |
| TCATCAACAGTACTAGTTCC+AGG | - | chr2_2:19612797-19612816 | None:intergenic | 40.0% | |
| ! | GATGATTGGGTTCCTTTTGA+AGG | + | chr2_2:19612812-19612831 | Msa0243020:CDS | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | + | chr2_2:19612941-19612960 | Msa0243020:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr2_2:19612977-19612996 | Msa0243020:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr2_2:19613063-19613082 | Msa0243020:CDS | 40.0% | |
| !! | AGGCTTTGAAATAAAGTGGG+TGG | + | chr2_2:19613093-19613112 | Msa0243020:CDS | 40.0% |
| ATTGGGATGTTACGATAAGC+GGG | - | chr2_2:19613181-19613200 | None:intergenic | 40.0% | |
| CACCAACCTACTCACAAAAA+TGG | - | chr2_2:19613307-19613326 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | - | chr2_2:19613413-19613432 | None:intergenic | 40.0% | |
| AAATATGCTGCCATTCAGAC+AGG | + | chr2_2:19613488-19613507 | Msa0243020:CDS | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr2_2:19613529-19613548 | Msa0243020:intron | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | - | chr2_2:19613694-19613713 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | - | chr2_2:19613916-19613935 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | - | chr2_2:19613917-19613936 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | + | chr2_2:19613922-19613941 | Msa0243020:CDS | 40.0% | |
| GTTCTTGGATAGGATCACAA+AGG | + | chr2_2:19614214-19614233 | Msa0243020:intron | 40.0% | |
| TCATCAACAGTACTAGTTCC+AGG | - | chr2_2:19612797-19612816 | None:intergenic | 40.0% | |
| ! | GATGATTGGGTTCCTTTTGA+AGG | + | chr2_2:19612812-19612831 | Msa0243020:CDS | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | + | chr2_2:19612941-19612960 | Msa0243020:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr2_2:19612977-19612996 | Msa0243020:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr2_2:19613063-19613082 | Msa0243020:CDS | 40.0% | |
| !! | AGGCTTTGAAATAAAGTGGG+TGG | + | chr2_2:19613093-19613112 | Msa0243020:CDS | 40.0% |
| ATTGGGATGTTACGATAAGC+GGG | - | chr2_2:19613181-19613200 | None:intergenic | 40.0% | |
| CACCAACCTACTCACAAAAA+TGG | - | chr2_2:19613307-19613326 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | - | chr2_2:19613413-19613432 | None:intergenic | 40.0% | |
| AAATATGCTGCCATTCAGAC+AGG | + | chr2_2:19613488-19613507 | Msa0243020:CDS | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr2_2:19613529-19613548 | Msa0243020:intron | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | - | chr2_2:19613694-19613713 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | - | chr2_2:19613916-19613935 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | - | chr2_2:19613917-19613936 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | + | chr2_2:19613922-19613941 | Msa0243020:CDS | 40.0% | |
| GTTCTTGGATAGGATCACAA+AGG | + | chr2_2:19614214-19614233 | Msa0243020:intron | 40.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | + | chr2_2:19613340-19613359 | Msa0243020:CDS | 45.0% | |
| GCGCATCATACCAAAGTTGA+TGG | + | chr2_2:19613526-19613545 | Msa0243020:intron | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | - | chr2_2:19613539-19613558 | None:intergenic | 45.0% | |
| ! | CAGGCATGCCTTTTATCTGT+CGG | - | chr2_2:19613864-19613883 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | + | chr2_2:19613973-19613992 | Msa0243020:CDS | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | - | chr2_2:19613991-19614010 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | + | chr2_2:19613988-19614007 | Msa0243020:CDS | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | + | chr2_2:19613991-19614010 | Msa0243020:CDS | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | - | chr2_2:19614070-19614089 | None:intergenic | 45.0% | |
| TGGATAGGATCACAAAGGGT+TGG | + | chr2_2:19614219-19614238 | Msa0243020:intron | 45.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | + | chr2_2:19613340-19613359 | Msa0243020:CDS | 45.0% | |
| GCGCATCATACCAAAGTTGA+TGG | + | chr2_2:19613526-19613545 | Msa0243020:intron | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | - | chr2_2:19613539-19613558 | None:intergenic | 45.0% | |
| ! | CAGGCATGCCTTTTATCTGT+CGG | - | chr2_2:19613864-19613883 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | + | chr2_2:19613973-19613992 | Msa0243020:CDS | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | - | chr2_2:19613991-19614010 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | + | chr2_2:19613988-19614007 | Msa0243020:CDS | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | + | chr2_2:19613991-19614010 | Msa0243020:CDS | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | - | chr2_2:19614070-19614089 | None:intergenic | 45.0% | |
| TGGATAGGATCACAAAGGGT+TGG | + | chr2_2:19614219-19614238 | Msa0243020:intron | 45.0% | |
| TAGTTCCAGGCTGAGGTTCT+TGG | - | chr2_2:19612784-19612803 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | - | chr2_2:19612791-19612810 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | + | chr2_2:19613545-19613564 | Msa0243020:intron | 50.0% | |
| ! | GCATGCCTTTTATCTGTCGG+AGG | - | chr2_2:19613861-19613880 | None:intergenic | 50.0% |
| ! | TGAACCTTTTGGCCGACCTT+TGG | - | chr2_2:19613980-19613999 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | + | chr2_2:19613980-19613999 | Msa0243020:CDS | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | - | chr2_2:19614006-19614025 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | - | chr2_2:19614028-19614047 | None:intergenic | 50.0% | |
| CGTTGTCACGTTCCCAATTG+CGG | + | chr2_2:19614039-19614058 | Msa0243020:CDS | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+GGG | - | chr2_2:19614054-19614073 | None:intergenic | 50.0% |
| ! | ATGATTGGTTCCGCCGCAAT+TGG | - | chr2_2:19614055-19614074 | None:intergenic | 50.0% |
| TAGTTCCAGGCTGAGGTTCT+TGG | - | chr2_2:19612784-19612803 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | - | chr2_2:19612791-19612810 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | + | chr2_2:19613545-19613564 | Msa0243020:intron | 50.0% | |
| ! | GCATGCCTTTTATCTGTCGG+AGG | - | chr2_2:19613861-19613880 | None:intergenic | 50.0% |
| ! | TGAACCTTTTGGCCGACCTT+TGG | - | chr2_2:19613980-19613999 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | + | chr2_2:19613980-19613999 | Msa0243020:CDS | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | - | chr2_2:19614006-19614025 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | - | chr2_2:19614028-19614047 | None:intergenic | 50.0% | |
| CGTTGTCACGTTCCCAATTG+CGG | + | chr2_2:19614039-19614058 | Msa0243020:CDS | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+GGG | - | chr2_2:19614054-19614073 | None:intergenic | 50.0% |
| ! | ATGATTGGTTCCGCCGCAAT+TGG | - | chr2_2:19614055-19614074 | None:intergenic | 50.0% |
| TGTCACGTTCCCAATTGCGG+CGG | + | chr2_2:19614042-19614061 | Msa0243020:CDS | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | + | chr2_2:19614061-19614080 | Msa0243020:CDS | 55.0% | |
| TGTCACGTTCCCAATTGCGG+CGG | + | chr2_2:19614042-19614061 | Msa0243020:CDS | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | + | chr2_2:19614061-19614080 | Msa0243020:CDS | 55.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | - | chr2_2:19612779-19612798 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | + | chr2_2:19612776-19612795 | Msa0243020:CDS | 60.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | - | chr2_2:19612779-19612798 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | + | chr2_2:19612776-19612795 | Msa0243020:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 19612665 | 19614268 | 19612665 | ID=Msa0243020;Name=Msa0243020 |
| chr2_2 | mRNA | 19612665 | 19614268 | 19612665 | ID=Msa0243020-mRNA-1;Parent=Msa0243020;Name=Msa0243020-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|0.75|1|1|4|0|449 |
| chr2_2 | exon | 19612665 | 19613246 | 19612665 | ID=Msa0243020-mRNA-1:exon:7964;Parent=Msa0243020-mRNA-1 |
| chr2_2 | exon | 19613320 | 19613509 | 19613320 | ID=Msa0243020-mRNA-1:exon:7965;Parent=Msa0243020-mRNA-1 |
| chr2_2 | exon | 19613605 | 19614139 | 19613605 | ID=Msa0243020-mRNA-1:exon:7966;Parent=Msa0243020-mRNA-1 |
| chr2_2 | exon | 19614226 | 19614268 | 19614226 | ID=Msa0243020-mRNA-1:exon:7967;Parent=Msa0243020-mRNA-1 |
| chr2_2 | CDS | 19612665 | 19613246 | 19612665 | ID=Msa0243020-mRNA-1:cds;Parent=Msa0243020-mRNA-1 |
| chr2_2 | CDS | 19613320 | 19613509 | 19613320 | ID=Msa0243020-mRNA-1:cds;Parent=Msa0243020-mRNA-1 |
| chr2_2 | CDS | 19613605 | 19614139 | 19613605 | ID=Msa0243020-mRNA-1:cds;Parent=Msa0243020-mRNA-1 |
| chr2_2 | CDS | 19614226 | 19614268 | 19614226 | ID=Msa0243020-mRNA-1:cds;Parent=Msa0243020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
