Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243680 | XP_003594864.1 | 90.506 | 158 | 15 | 0 | 1 | 158 | 1 | 158 | 7.15e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243680 | sp|Q9FJK3|AGL80_ARATH | 41.558 | 154 | 90 | 0 | 1 | 154 | 1 | 154 | 4.42e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243680 | G7IND2 | 90.506 | 158 | 15 | 0 | 1 | 158 | 1 | 158 | 3.41e-89 | 266 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0243680 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243680 | MtrunA17_Chr2g0296861 | 90.506 | 158 | 15 | 0 | 1 | 158 | 1 | 158 | 6.57e-93 | 266 |
| Msa0243680 | MtrunA17_Chr3g0107461 | 50.000 | 154 | 76 | 1 | 1 | 153 | 1 | 154 | 1.34e-46 | 149 |
| Msa0243680 | MtrunA17_Chr3g0107381 | 45.570 | 158 | 86 | 0 | 1 | 158 | 1 | 158 | 8.11e-46 | 149 |
| Msa0243680 | MtrunA17_Chr3g0110131 | 44.156 | 154 | 86 | 0 | 1 | 154 | 1 | 154 | 6.57e-38 | 129 |
| Msa0243680 | MtrunA17_Chr4g0014321 | 37.662 | 154 | 95 | 1 | 1 | 153 | 1 | 154 | 4.63e-35 | 122 |
| Msa0243680 | MtrunA17_Chr3g0105791 | 47.541 | 122 | 63 | 1 | 30 | 150 | 2 | 123 | 5.12e-34 | 116 |
| Msa0243680 | MtrunA17_Chr4g0031421 | 46.400 | 125 | 66 | 1 | 30 | 153 | 2 | 126 | 1.49e-33 | 115 |
| Msa0243680 | MtrunA17_Chr3g0107331 | 40.268 | 149 | 89 | 0 | 4 | 152 | 3 | 151 | 2.06e-33 | 115 |
| Msa0243680 | MtrunA17_Chr2g0283941 | 38.125 | 160 | 94 | 2 | 1 | 157 | 1 | 158 | 1.70e-32 | 115 |
| Msa0243680 | MtrunA17_Chr4g0013041 | 35.849 | 159 | 99 | 2 | 1 | 158 | 1 | 157 | 9.63e-32 | 112 |
| Msa0243680 | MtrunA17_Chr5g0432691 | 33.987 | 153 | 101 | 0 | 1 | 153 | 1 | 153 | 3.77e-31 | 110 |
| Msa0243680 | MtrunA17_Chr4g0014031 | 37.179 | 156 | 97 | 1 | 1 | 155 | 1 | 156 | 1.29e-29 | 107 |
| Msa0243680 | MtrunA17_Chr3g0107361 | 37.162 | 148 | 93 | 0 | 6 | 153 | 5 | 152 | 1.31e-29 | 105 |
| Msa0243680 | MtrunA17_Chr8g0351751 | 37.975 | 158 | 95 | 2 | 1 | 155 | 1 | 158 | 1.60e-29 | 108 |
| Msa0243680 | MtrunA17_Chr3g0106421 | 43.077 | 130 | 73 | 1 | 30 | 158 | 2 | 131 | 3.44e-29 | 106 |
| Msa0243680 | MtrunA17_Chr1g0197461 | 33.987 | 153 | 100 | 1 | 6 | 158 | 5 | 156 | 5.14e-29 | 104 |
| Msa0243680 | MtrunA17_Chr3g0107351 | 35.811 | 148 | 95 | 0 | 6 | 153 | 5 | 152 | 1.08e-28 | 103 |
| Msa0243680 | MtrunA17_Chr5g0420351 | 34.839 | 155 | 100 | 1 | 1 | 155 | 1 | 154 | 1.30e-28 | 103 |
| Msa0243680 | MtrunA17_Chr4g0014121 | 37.580 | 157 | 97 | 1 | 1 | 156 | 29 | 185 | 1.10e-27 | 101 |
| Msa0243680 | MtrunA17_Chr1g0188681 | 34.641 | 153 | 99 | 1 | 1 | 153 | 1 | 152 | 1.30e-27 | 100 |
| Msa0243680 | MtrunA17_Chr3g0107341 | 36.111 | 144 | 92 | 0 | 6 | 149 | 5 | 148 | 6.82e-27 | 99.0 |
| Msa0243680 | MtrunA17_Chr1g0197261 | 31.613 | 155 | 105 | 1 | 1 | 155 | 1 | 154 | 3.26e-24 | 92.0 |
| Msa0243680 | MtrunA17_Chr2g0296831 | 36.752 | 117 | 74 | 0 | 1 | 117 | 1 | 117 | 1.68e-23 | 89.4 |
| Msa0243680 | MtrunA17_Chr4g0014131 | 35.032 | 157 | 101 | 1 | 1 | 156 | 1 | 157 | 6.18e-23 | 90.5 |
| Msa0243680 | MtrunA17_Chr1g0197321 | 31.210 | 157 | 104 | 3 | 1 | 155 | 1 | 155 | 6.28e-22 | 86.3 |
| Msa0243680 | MtrunA17_Chr1g0193311 | 34.839 | 155 | 100 | 1 | 1 | 155 | 1 | 154 | 7.36e-22 | 85.9 |
| Msa0243680 | MtrunA17_Chr3g0106501 | 38.583 | 127 | 77 | 1 | 30 | 155 | 2 | 128 | 8.26e-22 | 85.9 |
| Msa0243680 | MtrunA17_Chr4g0012761 | 35.256 | 156 | 98 | 3 | 1 | 155 | 1 | 154 | 1.51e-21 | 85.1 |
| Msa0243680 | MtrunA17_Chr7g0218151 | 32.258 | 155 | 104 | 1 | 1 | 155 | 1 | 154 | 4.31e-21 | 84.0 |
| Msa0243680 | MtrunA17_Chr1g0188661 | 30.323 | 155 | 107 | 1 | 1 | 155 | 1 | 154 | 2.75e-20 | 82.0 |
| Msa0243680 | MtrunA17_Chr1g0188651 | 34.839 | 155 | 94 | 4 | 1 | 153 | 1 | 150 | 8.67e-18 | 75.5 |
| Msa0243680 | MtrunA17_Chr4g0008701 | 28.814 | 118 | 80 | 1 | 11 | 128 | 14 | 127 | 4.18e-11 | 60.1 |
| Msa0243680 | MtrunA17_Chr7g0267601 | 27.273 | 121 | 78 | 2 | 11 | 128 | 14 | 127 | 5.33e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243680 | AT5G48670.1 | 41.558 | 154 | 90 | 0 | 1 | 154 | 1 | 154 | 4.49e-32 | 116 |
| Msa0243680 | AT3G05860.2 | 37.584 | 149 | 93 | 0 | 1 | 149 | 1 | 149 | 9.45e-30 | 108 |
| Msa0243680 | AT1G65300.1 | 37.748 | 151 | 94 | 0 | 4 | 154 | 3 | 153 | 9.74e-30 | 109 |
| Msa0243680 | AT1G65330.1 | 40.000 | 150 | 88 | 2 | 6 | 154 | 5 | 153 | 1.20e-29 | 109 |
| Msa0243680 | AT3G05860.3 | 39.744 | 156 | 80 | 3 | 1 | 149 | 1 | 149 | 5.18e-29 | 107 |
| Msa0243680 | AT3G05860.1 | 39.744 | 156 | 80 | 3 | 1 | 149 | 1 | 149 | 5.41e-29 | 107 |
| Msa0243680 | AT1G31630.1 | 33.333 | 153 | 91 | 3 | 6 | 153 | 5 | 151 | 4.89e-24 | 95.9 |
| Msa0243680 | AT1G31640.1 | 36.735 | 147 | 82 | 3 | 11 | 152 | 10 | 150 | 1.49e-23 | 95.9 |
| Msa0243680 | AT5G27810.1 | 43.182 | 88 | 50 | 0 | 30 | 117 | 2 | 89 | 7.04e-23 | 87.8 |
| Msa0243680 | AT5G26650.1 | 32.237 | 152 | 103 | 0 | 4 | 155 | 2 | 153 | 1.77e-22 | 92.0 |
| Msa0243680 | AT5G27960.1 | 31.579 | 152 | 104 | 0 | 4 | 155 | 2 | 153 | 1.51e-21 | 89.0 |
| Msa0243680 | AT1G22590.2 | 36.111 | 108 | 69 | 0 | 11 | 118 | 11 | 118 | 5.46e-21 | 84.3 |
| Msa0243680 | AT2G28700.1 | 29.530 | 149 | 105 | 0 | 1 | 149 | 1 | 149 | 5.40e-20 | 84.7 |
| Msa0243680 | AT2G40210.1 | 29.710 | 138 | 96 | 1 | 1 | 138 | 1 | 137 | 6.62e-15 | 71.2 |
| Msa0243680 | AT5G26580.1 | 28.931 | 159 | 89 | 5 | 1 | 154 | 1 | 140 | 3.12e-14 | 68.9 |
| Msa0243680 | AT5G26630.1 | 26.623 | 154 | 113 | 0 | 1 | 154 | 1 | 154 | 4.38e-14 | 67.4 |
| Msa0243680 | AT5G06500.1 | 28.182 | 110 | 75 | 1 | 1 | 110 | 1 | 106 | 3.93e-13 | 65.1 |
Find 30 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATCTATCATTGCTTAT+TGG | 0.201999 | 2_2:-20968211 | Msa0243680:CDS |
| CTTCTCTTTCGATTTCATTA+TGG | 0.221424 | 2_2:+20968339 | None:intergenic |
| GGTGATTTCACTAATCTTCT+TGG | 0.273592 | 2_2:+20968531 | None:intergenic |
| ATTCATACGGGTGAATTTGA+TGG | 0.333961 | 2_2:-20968256 | Msa0243680:CDS |
| AGATGGTGTTGGACAAGTTT+AGG | 0.350542 | 2_2:-20968423 | Msa0243680:CDS |
| GTTTAGGAGCTTTCCTGAAT+CGG | 0.417309 | 2_2:-20968407 | Msa0243680:CDS |
| TAAACTTGTCCAACACCATC+TGG | 0.418271 | 2_2:+20968425 | None:intergenic |
| GGAAGACAACATTCAACAAA+AGG | 0.464060 | 2_2:-20968953 | Msa0243680:CDS |
| ATCTATGATGAAAACAATGA+TGG | 0.489972 | 2_2:-20968478 | Msa0243680:CDS |
| ACTTGGTGAATTCATTCATA+CGG | 0.496749 | 2_2:-20968269 | Msa0243680:CDS |
| AGAGAAGTTGAAGAAACAAA+AGG | 0.500916 | 2_2:-20968323 | Msa0243680:CDS |
| CCTGAATCGGAACAAAGAAA+AGG | 0.516491 | 2_2:-20968394 | Msa0243680:CDS |
| GGAACAAAGAAAAGGAAAGC+TGG | 0.520124 | 2_2:-20968386 | Msa0243680:CDS |
| AGTTGAAGAAACAAAAGGAC+AGG | 0.532305 | 2_2:-20968318 | Msa0243680:CDS |
| AAAAGGAAAGCTGGATCATG+AGG | 0.532487 | 2_2:-20968377 | Msa0243680:CDS |
| CTTGGTGAATTCATTCATAC+GGG | 0.535817 | 2_2:-20968268 | Msa0243680:CDS |
| AAGAAAATGAATGATCTACT+TGG | 0.551967 | 2_2:-20968286 | Msa0243680:CDS |
| ACGGTTTATCCATCAAAAGA+AGG | 0.566324 | 2_2:-20968451 | Msa0243680:CDS |
| ACATAACTGATGACTTGAAG+AGG | 0.573872 | 2_2:-20968974 | Msa0243680:CDS |
| AGAAGGAGTCCAGATGGTGT+TGG | 0.590630 | 2_2:-20968434 | Msa0243680:CDS |
| ACCGAAAAGAAGTCGATGAG+AGG | 0.615793 | 2_2:-20968183 | Msa0243680:CDS |
| ATCAAAAGAAGGAGTCCAGA+TGG | 0.615817 | 2_2:-20968440 | Msa0243680:CDS |
| TGAAAACAATGATGGAGCAA+CGG | 0.627126 | 2_2:-20968470 | Msa0243680:CDS |
| ACATTCAACAAAAGGAAGCA+TGG | 0.630577 | 2_2:-20968945 | Msa0243680:intron |
| AGTGAAATCACCACCCTGTG+TGG | 0.639509 | 2_2:-20968520 | Msa0243680:CDS |
| CACATGCATCAATTCCACAC+AGG | 0.642340 | 2_2:+20968506 | None:intergenic |
| ACATGCATCAATTCCACACA+GGG | 0.652843 | 2_2:+20968507 | None:intergenic |
| AAAGGAAAGCTGGATCATGA+GGG | 0.661580 | 2_2:-20968376 | Msa0243680:CDS |
| CTGTGTGGAATTGATGCATG+TGG | 0.686522 | 2_2:-20968505 | Msa0243680:CDS |
| TGCATCAATTCCACACAGGG+TGG | 0.698056 | 2_2:+20968510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAACAATAATTTCAA+AGG | + | chr2_2:20968513-20968532 | None:intergenic | 15.0% |
| !! | GAAAATAACAATAATTTCAA+AGG | + | chr2_2:20968513-20968532 | None:intergenic | 15.0% |
| !! | AGTGTTCTTTATAGAAATAA+AGG | + | chr2_2:20968262-20968281 | None:intergenic | 20.0% |
| !!! | TTTCATATTTTTAGTATCCA+TGG | + | chr2_2:20968350-20968369 | None:intergenic | 20.0% |
| !! | TCATATTGATAAATTCCTAA+TGG | + | chr2_2:20968386-20968405 | None:intergenic | 20.0% |
| !! | ACATAACTGATATGTTATTA+TGG | + | chr2_2:20968487-20968506 | None:intergenic | 20.0% |
| !! | AGTGTTCTTTATAGAAATAA+AGG | + | chr2_2:20968262-20968281 | None:intergenic | 20.0% |
| !!! | TTTCATATTTTTAGTATCCA+TGG | + | chr2_2:20968350-20968369 | None:intergenic | 20.0% |
| !! | TCATATTGATAAATTCCTAA+TGG | + | chr2_2:20968386-20968405 | None:intergenic | 20.0% |
| !! | ACATAACTGATATGTTATTA+TGG | + | chr2_2:20968487-20968506 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTGTTTTTCAAC+AGG | - | chr2_2:20968605-20968624 | Msa0243680:intron | 25.0% |
| ! | ATCTATGATGAAAACAATGA+TGG | - | chr2_2:20968686-20968705 | Msa0243680:intron | 25.0% |
| !! | ATCATTCATTTTCTTCTTCT+TGG | + | chr2_2:20968873-20968892 | None:intergenic | 25.0% |
| ! | AAGAAAATGAATGATCTACT+TGG | - | chr2_2:20968878-20968897 | Msa0243680:intron | 25.0% |
| !!! | GTTTTGTTTTGTTTTTCAAC+AGG | - | chr2_2:20968605-20968624 | Msa0243680:intron | 25.0% |
| ! | ATCTATGATGAAAACAATGA+TGG | - | chr2_2:20968686-20968705 | Msa0243680:intron | 25.0% |
| !! | ATCATTCATTTTCTTCTTCT+TGG | + | chr2_2:20968873-20968892 | None:intergenic | 25.0% |
| ! | AAGAAAATGAATGATCTACT+TGG | - | chr2_2:20968878-20968897 | Msa0243680:intron | 25.0% |
| CTTCTCTTTCGATTTCATTA+TGG | + | chr2_2:20968828-20968847 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGAAACAAA+AGG | - | chr2_2:20968841-20968860 | Msa0243680:intron | 30.0% | |
| ! | ACTTGGTGAATTCATTCATA+CGG | - | chr2_2:20968895-20968914 | Msa0243680:intron | 30.0% |
| GAAGATCTATCATTGCTTAT+TGG | - | chr2_2:20968953-20968972 | Msa0243680:CDS | 30.0% | |
| CTTCTCTTTCGATTTCATTA+TGG | + | chr2_2:20968828-20968847 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGAAACAAA+AGG | - | chr2_2:20968841-20968860 | Msa0243680:intron | 30.0% | |
| ! | ACTTGGTGAATTCATTCATA+CGG | - | chr2_2:20968895-20968914 | Msa0243680:intron | 30.0% |
| GAAGATCTATCATTGCTTAT+TGG | - | chr2_2:20968953-20968972 | Msa0243680:CDS | 30.0% | |
| ACATAACTGATGACTTGAAG+AGG | - | chr2_2:20968190-20968209 | Msa0243680:CDS | 35.0% | |
| GGAAGACAACATTCAACAAA+AGG | - | chr2_2:20968211-20968230 | Msa0243680:CDS | 35.0% | |
| ACATTCAACAAAAGGAAGCA+TGG | - | chr2_2:20968219-20968238 | Msa0243680:CDS | 35.0% | |
| AAGTTGACTGCATAACCATT+AGG | - | chr2_2:20968368-20968387 | Msa0243680:CDS | 35.0% | |
| GGTGATTTCACTAATCTTCT+TGG | + | chr2_2:20968636-20968655 | None:intergenic | 35.0% | |
| ! | TGAAAACAATGATGGAGCAA+CGG | - | chr2_2:20968694-20968713 | Msa0243680:intron | 35.0% |
| ACGGTTTATCCATCAAAAGA+AGG | - | chr2_2:20968713-20968732 | Msa0243680:intron | 35.0% | |
| AGTTGAAGAAACAAAAGGAC+AGG | - | chr2_2:20968846-20968865 | Msa0243680:intron | 35.0% | |
| CTTGGTGAATTCATTCATAC+GGG | - | chr2_2:20968896-20968915 | Msa0243680:intron | 35.0% | |
| ATTCATACGGGTGAATTTGA+TGG | - | chr2_2:20968908-20968927 | Msa0243680:intron | 35.0% | |
| ACATAACTGATGACTTGAAG+AGG | - | chr2_2:20968190-20968209 | Msa0243680:CDS | 35.0% | |
| GGAAGACAACATTCAACAAA+AGG | - | chr2_2:20968211-20968230 | Msa0243680:CDS | 35.0% | |
| ACATTCAACAAAAGGAAGCA+TGG | - | chr2_2:20968219-20968238 | Msa0243680:CDS | 35.0% | |
| AAGTTGACTGCATAACCATT+AGG | - | chr2_2:20968368-20968387 | Msa0243680:CDS | 35.0% | |
| GGTGATTTCACTAATCTTCT+TGG | + | chr2_2:20968636-20968655 | None:intergenic | 35.0% | |
| ! | TGAAAACAATGATGGAGCAA+CGG | - | chr2_2:20968694-20968713 | Msa0243680:intron | 35.0% |
| ACGGTTTATCCATCAAAAGA+AGG | - | chr2_2:20968713-20968732 | Msa0243680:intron | 35.0% | |
| AGTTGAAGAAACAAAAGGAC+AGG | - | chr2_2:20968846-20968865 | Msa0243680:intron | 35.0% | |
| CTTGGTGAATTCATTCATAC+GGG | - | chr2_2:20968896-20968915 | Msa0243680:intron | 35.0% | |
| ATTCATACGGGTGAATTTGA+TGG | - | chr2_2:20968908-20968927 | Msa0243680:intron | 35.0% | |
| ! | CAGTTTTCTGATCACTACCA+TGG | - | chr2_2:20968330-20968349 | Msa0243680:CDS | 40.0% |
| CATTTCTCTCAACTCTCTCA+CGG | - | chr2_2:20968582-20968601 | Msa0243680:intron | 40.0% | |
| ATTTCTCTCAACTCTCTCAC+GGG | - | chr2_2:20968583-20968602 | Msa0243680:intron | 40.0% | |
| ACATGCATCAATTCCACACA+GGG | + | chr2_2:20968660-20968679 | None:intergenic | 40.0% | |
| ! | ATCTGGACTCCTTCTTTTGA+TGG | + | chr2_2:20968725-20968744 | None:intergenic | 40.0% |
| ATCAAAAGAAGGAGTCCAGA+TGG | - | chr2_2:20968724-20968743 | Msa0243680:intron | 40.0% | |
| TAAACTTGTCCAACACCATC+TGG | + | chr2_2:20968742-20968761 | None:intergenic | 40.0% | |
| ! | AGATGGTGTTGGACAAGTTT+AGG | - | chr2_2:20968741-20968760 | Msa0243680:intron | 40.0% |
| GTTTAGGAGCTTTCCTGAAT+CGG | - | chr2_2:20968757-20968776 | Msa0243680:intron | 40.0% | |
| ! | CCTTTTCTTTGTTCCGATTC+AGG | + | chr2_2:20968773-20968792 | None:intergenic | 40.0% |
| CCTGAATCGGAACAAAGAAA+AGG | - | chr2_2:20968770-20968789 | Msa0243680:intron | 40.0% | |
| GGAACAAAGAAAAGGAAAGC+TGG | - | chr2_2:20968778-20968797 | Msa0243680:intron | 40.0% | |
| AAAAGGAAAGCTGGATCATG+AGG | - | chr2_2:20968787-20968806 | Msa0243680:intron | 40.0% | |
| AAAGGAAAGCTGGATCATGA+GGG | - | chr2_2:20968788-20968807 | Msa0243680:intron | 40.0% | |
| !!! | TCCTCTCATCGACTTCTTTT+CGG | + | chr2_2:20968985-20969004 | None:intergenic | 40.0% |
| ! | CAGTTTTCTGATCACTACCA+TGG | - | chr2_2:20968330-20968349 | Msa0243680:CDS | 40.0% |
| CATTTCTCTCAACTCTCTCA+CGG | - | chr2_2:20968582-20968601 | Msa0243680:intron | 40.0% | |
| ATTTCTCTCAACTCTCTCAC+GGG | - | chr2_2:20968583-20968602 | Msa0243680:intron | 40.0% | |
| ACATGCATCAATTCCACACA+GGG | + | chr2_2:20968660-20968679 | None:intergenic | 40.0% | |
| ! | ATCTGGACTCCTTCTTTTGA+TGG | + | chr2_2:20968725-20968744 | None:intergenic | 40.0% |
| ATCAAAAGAAGGAGTCCAGA+TGG | - | chr2_2:20968724-20968743 | Msa0243680:intron | 40.0% | |
| TAAACTTGTCCAACACCATC+TGG | + | chr2_2:20968742-20968761 | None:intergenic | 40.0% | |
| ! | AGATGGTGTTGGACAAGTTT+AGG | - | chr2_2:20968741-20968760 | Msa0243680:intron | 40.0% |
| GTTTAGGAGCTTTCCTGAAT+CGG | - | chr2_2:20968757-20968776 | Msa0243680:intron | 40.0% | |
| ! | CCTTTTCTTTGTTCCGATTC+AGG | + | chr2_2:20968773-20968792 | None:intergenic | 40.0% |
| CCTGAATCGGAACAAAGAAA+AGG | - | chr2_2:20968770-20968789 | Msa0243680:intron | 40.0% | |
| GGAACAAAGAAAAGGAAAGC+TGG | - | chr2_2:20968778-20968797 | Msa0243680:intron | 40.0% | |
| AAAAGGAAAGCTGGATCATG+AGG | - | chr2_2:20968787-20968806 | Msa0243680:intron | 40.0% | |
| AAAGGAAAGCTGGATCATGA+GGG | - | chr2_2:20968788-20968807 | Msa0243680:intron | 40.0% | |
| !!! | TCCTCTCATCGACTTCTTTT+CGG | + | chr2_2:20968985-20969004 | None:intergenic | 40.0% |
| CACATGCATCAATTCCACAC+AGG | + | chr2_2:20968661-20968680 | None:intergenic | 45.0% | |
| CTGTGTGGAATTGATGCATG+TGG | - | chr2_2:20968659-20968678 | Msa0243680:intron | 45.0% | |
| ACCGAAAAGAAGTCGATGAG+AGG | - | chr2_2:20968981-20969000 | Msa0243680:CDS | 45.0% | |
| CACATGCATCAATTCCACAC+AGG | + | chr2_2:20968661-20968680 | None:intergenic | 45.0% | |
| CTGTGTGGAATTGATGCATG+TGG | - | chr2_2:20968659-20968678 | Msa0243680:intron | 45.0% | |
| ACCGAAAAGAAGTCGATGAG+AGG | - | chr2_2:20968981-20969000 | Msa0243680:CDS | 45.0% | |
| AGTGAAATCACCACCCTGTG+TGG | - | chr2_2:20968644-20968663 | Msa0243680:intron | 50.0% | |
| TGCATCAATTCCACACAGGG+TGG | + | chr2_2:20968657-20968676 | None:intergenic | 50.0% | |
| AGAAGGAGTCCAGATGGTGT+TGG | - | chr2_2:20968730-20968749 | Msa0243680:intron | 50.0% | |
| AGTGAAATCACCACCCTGTG+TGG | - | chr2_2:20968644-20968663 | Msa0243680:intron | 50.0% | |
| TGCATCAATTCCACACAGGG+TGG | + | chr2_2:20968657-20968676 | None:intergenic | 50.0% | |
| AGAAGGAGTCCAGATGGTGT+TGG | - | chr2_2:20968730-20968749 | Msa0243680:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 20968162 | 20969024 | 20968162 | ID=Msa0243680;Name=Msa0243680 |
| chr2_2 | mRNA | 20968162 | 20969024 | 20968162 | ID=Msa0243680-mRNA-1;Parent=Msa0243680;Name=Msa0243680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|158 |
| chr2_2 | exon | 20968946 | 20969024 | 20968946 | ID=Msa0243680-mRNA-1:exon:8351;Parent=Msa0243680-mRNA-1 |
| chr2_2 | exon | 20968162 | 20968559 | 20968162 | ID=Msa0243680-mRNA-1:exon:8350;Parent=Msa0243680-mRNA-1 |
| chr2_2 | CDS | 20968946 | 20969024 | 20968946 | ID=Msa0243680-mRNA-1:cds;Parent=Msa0243680-mRNA-1 |
| chr2_2 | CDS | 20968162 | 20968559 | 20968162 | ID=Msa0243680-mRNA-1:cds;Parent=Msa0243680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
