Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245080 | XP_013463424.1 | 97.209 | 215 | 4 | 1 | 1 | 213 | 1 | 215 | 2.64e-147 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245080 | sp|Q05466|HAT4_ARATH | 49.032 | 155 | 79 | 0 | 53 | 207 | 102 | 256 | 1.86e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245080 | G7IIE0 | 97.209 | 215 | 4 | 1 | 1 | 213 | 1 | 215 | 1.26e-147 | 418 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0245080 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245080 | MtrunA17_Chr2g0299031 | 97.209 | 215 | 4 | 1 | 1 | 213 | 1 | 215 | 2.43e-151 | 418 |
| Msa0245080 | MtrunA17_Chr4g0055851 | 44.886 | 176 | 97 | 0 | 35 | 210 | 75 | 250 | 2.24e-42 | 144 |
| Msa0245080 | MtrunA17_Chr5g0400781 | 57.937 | 126 | 52 | 1 | 70 | 195 | 113 | 237 | 4.32e-41 | 140 |
| Msa0245080 | MtrunA17_Chr8g0335131 | 61.062 | 113 | 44 | 0 | 80 | 192 | 146 | 258 | 4.48e-41 | 141 |
| Msa0245080 | MtrunA17_Chr5g0399491 | 53.077 | 130 | 61 | 0 | 68 | 197 | 124 | 253 | 7.26e-41 | 140 |
| Msa0245080 | MtrunA17_Chr7g0258831 | 56.115 | 139 | 57 | 3 | 58 | 193 | 135 | 272 | 9.90e-41 | 140 |
| Msa0245080 | MtrunA17_Chr1g0175651 | 56.296 | 135 | 49 | 3 | 64 | 193 | 137 | 266 | 3.81e-40 | 139 |
| Msa0245080 | MtrunA17_Chr4g0054421 | 56.061 | 132 | 55 | 2 | 63 | 193 | 110 | 239 | 4.25e-40 | 138 |
| Msa0245080 | MtrunA17_Chr2g0308611 | 60.870 | 115 | 42 | 2 | 80 | 193 | 200 | 312 | 7.63e-38 | 134 |
| Msa0245080 | MtrunA17_Chr1g0151971 | 49.677 | 155 | 74 | 3 | 47 | 197 | 94 | 248 | 2.42e-36 | 129 |
| Msa0245080 | MtrunA17_Chr4g0044091 | 50.847 | 118 | 53 | 1 | 80 | 192 | 65 | 182 | 2.68e-34 | 121 |
| Msa0245080 | MtrunA17_Chr4g0071411 | 42.308 | 208 | 100 | 5 | 9 | 199 | 7 | 211 | 3.68e-34 | 121 |
| Msa0245080 | MtrunA17_Chr3g0135331 | 55.906 | 127 | 53 | 2 | 67 | 193 | 133 | 256 | 1.77e-31 | 116 |
| Msa0245080 | MtrunA17_Chr5g0416391 | 37.273 | 110 | 66 | 1 | 58 | 167 | 58 | 164 | 4.30e-13 | 66.6 |
| Msa0245080 | MtrunA17_Chr1g0179581 | 43.373 | 83 | 47 | 0 | 80 | 162 | 28 | 110 | 1.74e-12 | 61.6 |
| Msa0245080 | MtrunA17_Chr6g0450991 | 42.045 | 88 | 51 | 0 | 80 | 167 | 67 | 154 | 2.31e-12 | 64.7 |
| Msa0245080 | MtrunA17_Chr7g0217111 | 42.268 | 97 | 52 | 1 | 77 | 169 | 77 | 173 | 2.92e-12 | 64.3 |
| Msa0245080 | MtrunA17_Chr7g0265521 | 32.667 | 150 | 91 | 4 | 25 | 167 | 4 | 150 | 3.73e-12 | 63.5 |
| Msa0245080 | MtrunA17_Chr5g0415941 | 40.000 | 95 | 50 | 1 | 79 | 166 | 86 | 180 | 4.07e-12 | 64.3 |
| Msa0245080 | MtrunA17_Chr3g0119291 | 42.105 | 95 | 48 | 1 | 80 | 167 | 59 | 153 | 5.31e-12 | 63.2 |
| Msa0245080 | MtrunA17_Chr8g0381741 | 40.336 | 119 | 58 | 4 | 74 | 179 | 43 | 161 | 9.01e-12 | 63.2 |
| Msa0245080 | MtrunA17_Chr4g0060031 | 40.909 | 88 | 52 | 0 | 80 | 167 | 95 | 182 | 3.21e-11 | 61.6 |
| Msa0245080 | MtrunA17_Chr8g0362151 | 36.697 | 109 | 65 | 2 | 58 | 166 | 59 | 163 | 3.35e-11 | 61.2 |
| Msa0245080 | MtrunA17_Chr8g0362751 | 41.053 | 95 | 49 | 1 | 79 | 166 | 88 | 182 | 4.09e-11 | 60.8 |
| Msa0245080 | MtrunA17_Chr6g0453021 | 40.196 | 102 | 57 | 1 | 70 | 167 | 82 | 183 | 5.12e-11 | 60.8 |
| Msa0245080 | MtrunA17_Chr3g0123691 | 36.441 | 118 | 65 | 3 | 61 | 171 | 43 | 157 | 6.98e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245080 | AT4G16780.1 | 49.032 | 155 | 79 | 0 | 53 | 207 | 102 | 256 | 1.89e-43 | 147 |
| Msa0245080 | AT4G17460.1 | 50.336 | 149 | 68 | 1 | 49 | 197 | 110 | 252 | 8.01e-42 | 143 |
| Msa0245080 | AT5G47370.1 | 57.627 | 118 | 50 | 0 | 80 | 197 | 130 | 247 | 3.69e-40 | 139 |
| Msa0245080 | AT3G60390.1 | 55.738 | 122 | 54 | 0 | 71 | 192 | 153 | 274 | 7.89e-40 | 139 |
| Msa0245080 | AT5G06710.1 | 56.452 | 124 | 53 | 1 | 70 | 193 | 180 | 302 | 1.23e-39 | 139 |
| Msa0245080 | AT4G37790.1 | 57.143 | 126 | 51 | 2 | 70 | 193 | 114 | 238 | 6.75e-39 | 135 |
| Msa0245080 | AT2G44910.1 | 57.895 | 114 | 48 | 0 | 80 | 193 | 163 | 276 | 1.26e-38 | 135 |
| Msa0245080 | AT2G22800.1 | 55.556 | 126 | 53 | 2 | 70 | 193 | 101 | 225 | 1.82e-37 | 131 |
| Msa0245080 | AT2G01430.1 | 54.386 | 114 | 49 | 1 | 80 | 193 | 139 | 249 | 4.79e-35 | 125 |
| Msa0245080 | AT1G70920.1 | 50.000 | 124 | 54 | 2 | 70 | 193 | 59 | 174 | 4.77e-29 | 108 |
| Msa0245080 | AT1G70920.2 | 50.000 | 124 | 54 | 2 | 70 | 193 | 29 | 144 | 5.00e-29 | 107 |
| Msa0245080 | AT5G06710.4 | 61.290 | 62 | 24 | 0 | 70 | 131 | 180 | 241 | 1.89e-18 | 81.6 |
| Msa0245080 | AT5G03790.1 | 42.574 | 101 | 58 | 0 | 68 | 168 | 65 | 165 | 1.48e-15 | 73.2 |
| Msa0245080 | AT2G01430.2 | 58.182 | 55 | 23 | 0 | 80 | 134 | 139 | 193 | 3.19e-14 | 69.3 |
| Msa0245080 | AT3G01220.1 | 32.738 | 168 | 101 | 3 | 50 | 210 | 57 | 219 | 2.06e-13 | 67.8 |
| Msa0245080 | AT5G03790.2 | 41.053 | 95 | 56 | 0 | 68 | 162 | 65 | 159 | 1.05e-12 | 64.7 |
| Msa0245080 | AT2G18550.1 | 33.333 | 144 | 89 | 2 | 67 | 209 | 48 | 185 | 2.27e-12 | 64.3 |
| Msa0245080 | AT4G36740.2 | 37.374 | 99 | 62 | 0 | 68 | 166 | 44 | 142 | 2.38e-12 | 63.9 |
| Msa0245080 | AT4G36740.1 | 37.374 | 99 | 62 | 0 | 68 | 166 | 43 | 141 | 2.47e-12 | 63.9 |
| Msa0245080 | AT3G01470.1 | 47.222 | 72 | 38 | 0 | 80 | 151 | 68 | 139 | 4.81e-12 | 63.9 |
| Msa0245080 | AT1G26960.1 | 40.909 | 88 | 52 | 0 | 80 | 167 | 71 | 158 | 1.66e-11 | 62.4 |
| Msa0245080 | AT2G46680.1 | 39.394 | 99 | 56 | 1 | 83 | 177 | 35 | 133 | 9.70e-11 | 60.1 |
Find 36 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTGCTCTTCTGTTC+TGG | 0.227517 | 2_2:-24004239 | None:intergenic |
| GTTCATCATGCAAGAAAATA+TGG | 0.268795 | 2_2:+24005061 | Msa0245080:CDS |
| GATGATTGAGTTGTGTTTGA+TGG | 0.272598 | 2_2:-24005015 | None:intergenic |
| AATCATCTAAAGCTGCAAAT+TGG | 0.315157 | 2_2:+24005031 | Msa0245080:CDS |
| CTTAATCTTAAACTTGGATT+AGG | 0.319965 | 2_2:+24003692 | Msa0245080:CDS |
| CCATTGATTTGAACCATGAT+AGG | 0.325695 | 2_2:+24003771 | Msa0245080:CDS |
| GGTTGATTCAAAAGAAGAAT+TGG | 0.345182 | 2_2:+24003748 | Msa0245080:CDS |
| TAGACTTTAATCTAACTCTA+TGG | 0.352396 | 2_2:-24005127 | None:intergenic |
| AACTAAGTGAGGAGAATCTT+AGG | 0.353207 | 2_2:+24004950 | Msa0245080:CDS |
| AGCAAAGACAGGTTGAAGTT+TGG | 0.373329 | 2_2:+24004214 | Msa0245080:CDS |
| TGAGCACCCGTTGTTGTCAT+TGG | 0.382575 | 2_2:-24003870 | None:intergenic |
| AATAACAACATCCTCCTCAT+TGG | 0.419038 | 2_2:-24005088 | None:intergenic |
| TCAATTCATTTGCCCTATCA+TGG | 0.421387 | 2_2:-24003784 | None:intergenic |
| AATTGTGCTGTGACGCTTGA+AGG | 0.428719 | 2_2:-24003939 | None:intergenic |
| TTTCTTGCATGATGAACAAA+TGG | 0.440678 | 2_2:-24005055 | None:intergenic |
| ATAACAACATCCTCCTCATT+GGG | 0.441004 | 2_2:-24005087 | None:intergenic |
| ACACCACCAATGACAACAAC+GGG | 0.443518 | 2_2:+24003864 | Msa0245080:CDS |
| TTGGATCTTAATCTTAAACT+TGG | 0.447542 | 2_2:+24003686 | Msa0245080:CDS |
| AAACAATGTGAACAAACCTT+TGG | 0.458446 | 2_2:+24003727 | Msa0245080:CDS |
| ATTGAATTTAAAGCAAAGAC+AGG | 0.478696 | 2_2:+24004203 | Msa0245080:CDS |
| CCTATCATGGTTCAAATCAA+TGG | 0.487751 | 2_2:-24003771 | None:intergenic |
| GGAGAATCTTAGGTTGAAGA+AGG | 0.518622 | 2_2:+24004960 | Msa0245080:CDS |
| GCACCCGTTGTTGTCATTGG+TGG | 0.522365 | 2_2:-24003867 | None:intergenic |
| GAACTGCGTGCATTAAAAGT+TGG | 0.525263 | 2_2:+24004991 | Msa0245080:CDS |
| CATTGATTTGAACCATGATA+GGG | 0.530963 | 2_2:+24003772 | Msa0245080:CDS |
| AATCTAACTCTATGGTGCTG+TGG | 0.578396 | 2_2:-24005119 | None:intergenic |
| ACGGGTGCTCAAAGAAATTG+AGG | 0.587563 | 2_2:+24003882 | Msa0245080:CDS |
| TCATCACATGGCATGCACGT+TGG | 0.611315 | 2_2:+24003667 | Msa0245080:CDS |
| CATGGATGATGATCATCACA+TGG | 0.636914 | 2_2:+24003655 | None:intergenic |
| GAAAATATGGAAGCCCAATG+AGG | 0.640653 | 2_2:+24005074 | Msa0245080:CDS |
| GACACCACCAATGACAACAA+CGG | 0.643008 | 2_2:+24003863 | Msa0245080:CDS |
| GGTTCCAGAACAGAAGAGCA+AGG | 0.646687 | 2_2:+24004235 | Msa0245080:CDS |
| AATATGGAAGCCCAATGAGG+AGG | 0.651470 | 2_2:+24005077 | Msa0245080:CDS |
| ATGTCATGAGAAACTAAGTG+AGG | 0.678157 | 2_2:+24004939 | Msa0245080:CDS |
| CATGTGATGATCATCATCCA+TGG | 0.692362 | 2_2:-24003654 | None:intergenic |
| GACTAAGCTGAAACAAACAG+AGG | 0.748545 | 2_2:+24004894 | Msa0245080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAATTATTAATTTTA+TGG | + | chr2_2:24004026-24004045 | Msa0245080:intron | 0.0% |
| !!! | TTTATTAATTATTAATTTTA+TGG | + | chr2_2:24004026-24004045 | Msa0245080:intron | 0.0% |
| !!! | TTTTCATTTATCAAAATTTA+AGG | + | chr2_2:24004119-24004138 | Msa0245080:intron | 10.0% |
| !! | TTTCATTTATCAAAATTTAA+GGG | + | chr2_2:24004120-24004139 | Msa0245080:intron | 10.0% |
| !!! | TTTTATTATTTTTTCTTTCA+TGG | + | chr2_2:24004300-24004319 | Msa0245080:intron | 10.0% |
| !!! | TTTTCATTTATCAAAATTTA+AGG | + | chr2_2:24004119-24004138 | Msa0245080:intron | 10.0% |
| !! | TTTCATTTATCAAAATTTAA+GGG | + | chr2_2:24004120-24004139 | Msa0245080:intron | 10.0% |
| !!! | TTTTATTATTTTTTCTTTCA+TGG | + | chr2_2:24004300-24004319 | Msa0245080:intron | 10.0% |
| !! | ATTCAAAGAGTAATATATTA+CGG | - | chr2_2:24003969-24003988 | None:intergenic | 15.0% |
| !!! | GAATTGATTTTTTTTTGTTT+CGG | + | chr2_2:24004142-24004161 | Msa0245080:intron | 15.0% |
| !!! | TTTCAAAAAATAATTTGTGT+TGG | + | chr2_2:24004479-24004498 | Msa0245080:intron | 15.0% |
| !! | ATAGTCAACAAATAATAAAT+TGG | - | chr2_2:24004513-24004532 | None:intergenic | 15.0% |
| !! | ATTCAAAGAGTAATATATTA+CGG | - | chr2_2:24003969-24003988 | None:intergenic | 15.0% |
| !!! | GAATTGATTTTTTTTTGTTT+CGG | + | chr2_2:24004142-24004161 | Msa0245080:intron | 15.0% |
| !!! | TTTCAAAAAATAATTTGTGT+TGG | + | chr2_2:24004479-24004498 | Msa0245080:intron | 15.0% |
| !! | ATAGTCAACAAATAATAAAT+TGG | - | chr2_2:24004513-24004532 | None:intergenic | 15.0% |
| !!! | TATGAATCATTTGGTTTAAT+TGG | + | chr2_2:24004258-24004277 | Msa0245080:intron | 20.0% |
| !!! | ATGAATCATTTGGTTTAATT+GGG | + | chr2_2:24004259-24004278 | Msa0245080:intron | 20.0% |
| !!! | ATGAAATTTTATAACTTGAG+TGG | - | chr2_2:24004618-24004637 | None:intergenic | 20.0% |
| !!! | AATTATACAATTGACTTTTC+AGG | + | chr2_2:24004872-24004891 | Msa0245080:intron | 20.0% |
| !!! | TATGAATCATTTGGTTTAAT+TGG | + | chr2_2:24004258-24004277 | Msa0245080:intron | 20.0% |
| !!! | ATGAATCATTTGGTTTAATT+GGG | + | chr2_2:24004259-24004278 | Msa0245080:intron | 20.0% |
| !!! | ATGAAATTTTATAACTTGAG+TGG | - | chr2_2:24004618-24004637 | None:intergenic | 20.0% |
| !!! | AATTATACAATTGACTTTTC+AGG | + | chr2_2:24004872-24004891 | Msa0245080:intron | 20.0% |
| ! | TTGGATCTTAATCTTAAACT+TGG | + | chr2_2:24003686-24003705 | Msa0245080:CDS | 25.0% |
| ! | CTTAATCTTAAACTTGGATT+AGG | + | chr2_2:24003692-24003711 | Msa0245080:CDS | 25.0% |
| !! | TTATGGAAGCTAATTTTGTA+TGG | + | chr2_2:24004043-24004062 | Msa0245080:intron | 25.0% |
| !! | ATTGAATTTAAAGCAAAGAC+AGG | + | chr2_2:24004203-24004222 | Msa0245080:CDS | 25.0% |
| ! | TTGACAGTTATATGAAATAG+AGG | + | chr2_2:24004747-24004766 | Msa0245080:intron | 25.0% |
| ! | TTGGATCTTAATCTTAAACT+TGG | + | chr2_2:24003686-24003705 | Msa0245080:CDS | 25.0% |
| ! | CTTAATCTTAAACTTGGATT+AGG | + | chr2_2:24003692-24003711 | Msa0245080:CDS | 25.0% |
| !! | TTATGGAAGCTAATTTTGTA+TGG | + | chr2_2:24004043-24004062 | Msa0245080:intron | 25.0% |
| !! | ATTGAATTTAAAGCAAAGAC+AGG | + | chr2_2:24004203-24004222 | Msa0245080:CDS | 25.0% |
| ! | TTGACAGTTATATGAAATAG+AGG | + | chr2_2:24004747-24004766 | Msa0245080:intron | 25.0% |
| AAACAATGTGAACAAACCTT+TGG | + | chr2_2:24003727-24003746 | Msa0245080:CDS | 30.0% | |
| ! | TCTTCTTTTGAATCAACCAA+AGG | - | chr2_2:24003746-24003765 | None:intergenic | 30.0% |
| ! | GGTTGATTCAAAAGAAGAAT+TGG | + | chr2_2:24003748-24003767 | Msa0245080:CDS | 30.0% |
| !! | CATTGATTTGAACCATGATA+GGG | + | chr2_2:24003772-24003791 | Msa0245080:CDS | 30.0% |
| ! | AATCATCTAAAGCTGCAAAT+TGG | + | chr2_2:24005031-24005050 | Msa0245080:CDS | 30.0% |
| TTTCTTGCATGATGAACAAA+TGG | - | chr2_2:24005058-24005077 | None:intergenic | 30.0% | |
| GTTCATCATGCAAGAAAATA+TGG | + | chr2_2:24005061-24005080 | Msa0245080:CDS | 30.0% | |
| AAACAATGTGAACAAACCTT+TGG | + | chr2_2:24003727-24003746 | Msa0245080:CDS | 30.0% | |
| ! | TCTTCTTTTGAATCAACCAA+AGG | - | chr2_2:24003746-24003765 | None:intergenic | 30.0% |
| ! | GGTTGATTCAAAAGAAGAAT+TGG | + | chr2_2:24003748-24003767 | Msa0245080:CDS | 30.0% |
| !! | CATTGATTTGAACCATGATA+GGG | + | chr2_2:24003772-24003791 | Msa0245080:CDS | 30.0% |
| ! | AATCATCTAAAGCTGCAAAT+TGG | + | chr2_2:24005031-24005050 | Msa0245080:CDS | 30.0% |
| TTTCTTGCATGATGAACAAA+TGG | - | chr2_2:24005058-24005077 | None:intergenic | 30.0% | |
| GTTCATCATGCAAGAAAATA+TGG | + | chr2_2:24005061-24005080 | Msa0245080:CDS | 30.0% | |
| CCTATCATGGTTCAAATCAA+TGG | - | chr2_2:24003774-24003793 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGAACCATGAT+AGG | + | chr2_2:24003771-24003790 | Msa0245080:CDS | 35.0% |
| TCAATTCATTTGCCCTATCA+TGG | - | chr2_2:24003787-24003806 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGGTTTTACATGC+AGG | + | chr2_2:24004155-24004174 | Msa0245080:intron | 35.0% |
| TTTACATGCAGGCTCAAAAA+CGG | + | chr2_2:24004166-24004185 | Msa0245080:intron | 35.0% | |
| AGAGCAAGGTATGAATCATT+TGG | + | chr2_2:24004249-24004268 | Msa0245080:intron | 35.0% | |
| ! | ACTTTTCACTTCTGATCAGT+TGG | + | chr2_2:24004366-24004385 | Msa0245080:intron | 35.0% |
| TGATCAGTTGGATTTCTTCT+TGG | + | chr2_2:24004378-24004397 | Msa0245080:intron | 35.0% | |
| TAGTAGTCAGGGTAAAATGA+TGG | - | chr2_2:24004432-24004451 | None:intergenic | 35.0% | |
| AATTTCTGACGTAGTAGTCA+GGG | - | chr2_2:24004443-24004462 | None:intergenic | 35.0% | |
| GACTGTTGAACACTACAATT+TGG | + | chr2_2:24004794-24004813 | Msa0245080:intron | 35.0% | |
| ATGTCATGAGAAACTAAGTG+AGG | + | chr2_2:24004939-24004958 | Msa0245080:CDS | 35.0% | |
| AACTAAGTGAGGAGAATCTT+AGG | + | chr2_2:24004950-24004969 | Msa0245080:CDS | 35.0% | |
| ! | GATGATTGAGTTGTGTTTGA+TGG | - | chr2_2:24005018-24005037 | None:intergenic | 35.0% |
| ATAACAACATCCTCCTCATT+GGG | - | chr2_2:24005090-24005109 | None:intergenic | 35.0% | |
| AATAACAACATCCTCCTCAT+TGG | - | chr2_2:24005091-24005110 | None:intergenic | 35.0% | |
| CCTATCATGGTTCAAATCAA+TGG | - | chr2_2:24003774-24003793 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGAACCATGAT+AGG | + | chr2_2:24003771-24003790 | Msa0245080:CDS | 35.0% |
| TCAATTCATTTGCCCTATCA+TGG | - | chr2_2:24003787-24003806 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGGTTTTACATGC+AGG | + | chr2_2:24004155-24004174 | Msa0245080:intron | 35.0% |
| TTTACATGCAGGCTCAAAAA+CGG | + | chr2_2:24004166-24004185 | Msa0245080:intron | 35.0% | |
| AGAGCAAGGTATGAATCATT+TGG | + | chr2_2:24004249-24004268 | Msa0245080:intron | 35.0% | |
| ! | ACTTTTCACTTCTGATCAGT+TGG | + | chr2_2:24004366-24004385 | Msa0245080:intron | 35.0% |
| TGATCAGTTGGATTTCTTCT+TGG | + | chr2_2:24004378-24004397 | Msa0245080:intron | 35.0% | |
| TAGTAGTCAGGGTAAAATGA+TGG | - | chr2_2:24004432-24004451 | None:intergenic | 35.0% | |
| AATTTCTGACGTAGTAGTCA+GGG | - | chr2_2:24004443-24004462 | None:intergenic | 35.0% | |
| GACTGTTGAACACTACAATT+TGG | + | chr2_2:24004794-24004813 | Msa0245080:intron | 35.0% | |
| ATGTCATGAGAAACTAAGTG+AGG | + | chr2_2:24004939-24004958 | Msa0245080:CDS | 35.0% | |
| AACTAAGTGAGGAGAATCTT+AGG | + | chr2_2:24004950-24004969 | Msa0245080:CDS | 35.0% | |
| ! | GATGATTGAGTTGTGTTTGA+TGG | - | chr2_2:24005018-24005037 | None:intergenic | 35.0% |
| ATAACAACATCCTCCTCATT+GGG | - | chr2_2:24005090-24005109 | None:intergenic | 35.0% | |
| AATAACAACATCCTCCTCAT+TGG | - | chr2_2:24005091-24005110 | None:intergenic | 35.0% | |
| !!! | CTTGAAGGCATTTTCAAGCT+TGG | - | chr2_2:24003927-24003946 | None:intergenic | 40.0% |
| TTACATGCAGGCTCAAAAAC+GGG | + | chr2_2:24004167-24004186 | Msa0245080:intron | 40.0% | |
| ! | AGCAAAGACAGGTTGAAGTT+TGG | + | chr2_2:24004214-24004233 | Msa0245080:CDS | 40.0% |
| GAATTTCTGACGTAGTAGTC+AGG | - | chr2_2:24004444-24004463 | None:intergenic | 40.0% | |
| GACTAAGCTGAAACAAACAG+AGG | + | chr2_2:24004894-24004913 | Msa0245080:CDS | 40.0% | |
| !! | GGAGAATCTTAGGTTGAAGA+AGG | + | chr2_2:24004960-24004979 | Msa0245080:CDS | 40.0% |
| GAACTGCGTGCATTAAAAGT+TGG | + | chr2_2:24004991-24005010 | Msa0245080:CDS | 40.0% | |
| GAAAATATGGAAGCCCAATG+AGG | + | chr2_2:24005074-24005093 | Msa0245080:CDS | 40.0% | |
| ! | AATCTAACTCTATGGTGCTG+TGG | - | chr2_2:24005122-24005141 | None:intergenic | 40.0% |
| !!! | CTTGAAGGCATTTTCAAGCT+TGG | - | chr2_2:24003927-24003946 | None:intergenic | 40.0% |
| TTACATGCAGGCTCAAAAAC+GGG | + | chr2_2:24004167-24004186 | Msa0245080:intron | 40.0% | |
| ! | AGCAAAGACAGGTTGAAGTT+TGG | + | chr2_2:24004214-24004233 | Msa0245080:CDS | 40.0% |
| GAATTTCTGACGTAGTAGTC+AGG | - | chr2_2:24004444-24004463 | None:intergenic | 40.0% | |
| GACTAAGCTGAAACAAACAG+AGG | + | chr2_2:24004894-24004913 | Msa0245080:CDS | 40.0% | |
| !! | GGAGAATCTTAGGTTGAAGA+AGG | + | chr2_2:24004960-24004979 | Msa0245080:CDS | 40.0% |
| GAACTGCGTGCATTAAAAGT+TGG | + | chr2_2:24004991-24005010 | Msa0245080:CDS | 40.0% | |
| GAAAATATGGAAGCCCAATG+AGG | + | chr2_2:24005074-24005093 | Msa0245080:CDS | 40.0% | |
| ! | AATCTAACTCTATGGTGCTG+TGG | - | chr2_2:24005122-24005141 | None:intergenic | 40.0% |
| GACACCACCAATGACAACAA+CGG | + | chr2_2:24003863-24003882 | Msa0245080:CDS | 45.0% | |
| ACACCACCAATGACAACAAC+GGG | + | chr2_2:24003864-24003883 | Msa0245080:CDS | 45.0% | |
| ACGGGTGCTCAAAGAAATTG+AGG | + | chr2_2:24003882-24003901 | Msa0245080:CDS | 45.0% | |
| AATTGTGCTGTGACGCTTGA+AGG | - | chr2_2:24003942-24003961 | None:intergenic | 45.0% | |
| CATACCTTGCTCTTCTGTTC+TGG | - | chr2_2:24004242-24004261 | None:intergenic | 45.0% | |
| AATATGGAAGCCCAATGAGG+AGG | + | chr2_2:24005077-24005096 | Msa0245080:CDS | 45.0% | |
| GACACCACCAATGACAACAA+CGG | + | chr2_2:24003863-24003882 | Msa0245080:CDS | 45.0% | |
| ACACCACCAATGACAACAAC+GGG | + | chr2_2:24003864-24003883 | Msa0245080:CDS | 45.0% | |
| ACGGGTGCTCAAAGAAATTG+AGG | + | chr2_2:24003882-24003901 | Msa0245080:CDS | 45.0% | |
| AATTGTGCTGTGACGCTTGA+AGG | - | chr2_2:24003942-24003961 | None:intergenic | 45.0% | |
| CATACCTTGCTCTTCTGTTC+TGG | - | chr2_2:24004242-24004261 | None:intergenic | 45.0% | |
| AATATGGAAGCCCAATGAGG+AGG | + | chr2_2:24005077-24005096 | Msa0245080:CDS | 45.0% | |
| TCATCACATGGCATGCACGT+TGG | + | chr2_2:24003667-24003686 | Msa0245080:CDS | 50.0% | |
| TGAGCACCCGTTGTTGTCAT+TGG | - | chr2_2:24003873-24003892 | None:intergenic | 50.0% | |
| ! | TCAAAAACGGGCACTTGCTG+AGG | + | chr2_2:24004179-24004198 | Msa0245080:CDS | 50.0% |
| GGTTCCAGAACAGAAGAGCA+AGG | + | chr2_2:24004235-24004254 | Msa0245080:CDS | 50.0% | |
| TCATCACATGGCATGCACGT+TGG | + | chr2_2:24003667-24003686 | Msa0245080:CDS | 50.0% | |
| TGAGCACCCGTTGTTGTCAT+TGG | - | chr2_2:24003873-24003892 | None:intergenic | 50.0% | |
| ! | TCAAAAACGGGCACTTGCTG+AGG | + | chr2_2:24004179-24004198 | Msa0245080:CDS | 50.0% |
| GGTTCCAGAACAGAAGAGCA+AGG | + | chr2_2:24004235-24004254 | Msa0245080:CDS | 50.0% | |
| GCACCCGTTGTTGTCATTGG+TGG | - | chr2_2:24003870-24003889 | None:intergenic | 55.0% | |
| GCACCCGTTGTTGTCATTGG+TGG | - | chr2_2:24003870-24003889 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 24003656 | 24005143 | 24003656 | ID=Msa0245080;Name=Msa0245080 |
| chr2_2 | mRNA | 24003656 | 24005143 | 24003656 | ID=Msa0245080-mRNA-1;Parent=Msa0245080;Name=Msa0245080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|213 |
| chr2_2 | exon | 24003656 | 24003967 | 24003656 | ID=Msa0245080-mRNA-1:exon:9247;Parent=Msa0245080-mRNA-1 |
| chr2_2 | exon | 24004177 | 24004256 | 24004177 | ID=Msa0245080-mRNA-1:exon:9248;Parent=Msa0245080-mRNA-1 |
| chr2_2 | exon | 24004894 | 24005143 | 24004894 | ID=Msa0245080-mRNA-1:exon:9249;Parent=Msa0245080-mRNA-1 |
| chr2_2 | CDS | 24003656 | 24003967 | 24003656 | ID=Msa0245080-mRNA-1:cds;Parent=Msa0245080-mRNA-1 |
| chr2_2 | CDS | 24004177 | 24004256 | 24004177 | ID=Msa0245080-mRNA-1:cds;Parent=Msa0245080-mRNA-1 |
| chr2_2 | CDS | 24004894 | 24005143 | 24004894 | ID=Msa0245080-mRNA-1:cds;Parent=Msa0245080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
