AlfalfaGEDB | Msa0245520

M. sativa cultivar zhongmu-4 / Msa0245520

KEGG: K14508
GO: GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245520	QOV03064.1	100.000	586	0	0	1	586	1	586	0.0	1210

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245520	sp\|Q5D0W8\|NPR1_ORYSI	57.401	554	199	8	50	576	36	579	0.0	574

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245520	A0A7U3NJF6	100.000	586	0	0	1	586	1	586	0.0	1210

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TFs/TRs:

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Gene ID	Type	Classification
Msa0245520	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245520	MtrunA17_Chr2g0299621	94.369	586	31	1	1	586	1	584	0.0	1084
Msa0245520	MtrunA17_Chr2g0291741	42.934	559	286	11	18	558	21	564	2.48e-143	427
Msa0245520	MtrunA17_Chr5g0442661	40.113	531	292	9	50	563	50	571	5.81e-123	375
Msa0245520	MtrunA17_Chr1g0171771	31.452	372	211	9	67	402	24	387	4.59e-39	149
Msa0245520	MtrunA17_Chr7g0256321	30.645	372	215	7	67	402	24	388	8.72e-38	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245520	AT1G64280.1	51.664	571	243	9	7	558	7	563	0.0	548
Msa0245520	AT4G26120.2	49.739	575	255	10	12	569	16	573	2.10e-177	515
Msa0245520	AT4G26120.1	49.739	575	255	10	12	569	15	572	2.34e-177	515
Msa0245520	AT4G19660.1	40.619	549	283	12	31	555	22	551	3.12e-122	373
Msa0245520	AT5G45110.1	42.424	528	272	11	50	556	43	559	5.62e-122	372
Msa0245520	AT4G19660.2	38.889	576	282	13	31	555	22	578	6.59e-117	360
Msa0245520	AT5G45110.2	41.615	483	250	11	50	514	43	511	9.76e-108	333
Msa0245520	AT3G57130.1	31.522	368	213	7	67	402	26	386	2.35e-40	153
Msa0245520	AT2G41370.1	29.648	398	224	9	54	402	3	393	7.51e-37	144

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Find 96 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAGTTTGATAAATC+TGG	0.386748	2_2:-25280989	Msa0245520:CDS
AAAGCGTAGTACGAAAGCTG+TGG	0.616351	2_2:-25281954	Msa0245520:CDS
AAGATCAAGAAGCTCAGTAG+TGG	0.633228	2_2:+25282132	None:intergenic
AAGCAATTCAGAAATTTGAA+AGG	0.578420	2_2:+25282819	None:intergenic
AAGCTATATTGTCTGATAGA+CGG	0.587341	2_2:+25283190	None:intergenic
AAGGGAGCCTTTACATGGTG+AGG	0.619314	2_2:-25281852	Msa0245520:CDS
AATGAAATCAGCAACAACAC+TGG	0.615518	2_2:-25283300	Msa0245520:CDS
AATGGCAATAGATGACATGT+TGG	0.639924	2_2:-25282485	Msa0245520:CDS
AATTCAGATGTGCCATCAAT+TGG	0.381830	2_2:+25281566	None:intergenic
ACTACTGAGCTTCTTGATCT+TGG	0.343475	2_2:-25282130	Msa0245520:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTATATTGTCTGATAGA+CGG	+	chr2_2:25281062-25281081	None:intergenic	30.0%
TTCTGCGTTATTTGTATAGT+GGG	-	chr2_2:25281286-25281305	Msa0245520:intron	30.0%
TAAAGATGTTTGTGTTTGTG+TGG	-	chr2_2:25281335-25281354	Msa0245520:intron	30.0%
GATGATGATTGTTTACACTT+TGG	-	chr2_2:25281357-25281376	Msa0245520:intron	30.0%
ATTGTTTACACTTTGGTTGT+TGG	-	chr2_2:25281364-25281383	Msa0245520:intron	30.0%
ACTAGACATTCTTGACAAAA+TGG	-	chr2_2:25281746-25281765	Msa0245520:intron	30.0%
ATATACAAACGCAAACAACT+CGG	-	chr2_2:25281924-25281943	Msa0245520:CDS	30.0%
CAGATGATGTAGAATTAGTA+AGG	-	chr2_2:25282015-25282034	Msa0245520:CDS	30.0%
GAACATGTAAGAAAATACCT+CGG	+	chr2_2:25282484-25282503	None:intergenic	30.0%
ATGGATATCAATCCAATTGA+TGG	-	chr2_2:25282671-25282690	Msa0245520:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	25280913	25283358	25280913	ID=Msa0245520;Name=Msa0245520
chr2_2	mRNA	25280913	25283358	25280913	ID=Msa0245520-mRNA-1;Parent=Msa0245520;Name=Msa0245520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|4\|0\|586
chr2_2	exon	25282807	25283358	25282807	ID=Msa0245520-mRNA-1:exon:9516;Parent=Msa0245520-mRNA-1
chr2_2	exon	25281786	25282533	25281786	ID=Msa0245520-mRNA-1:exon:9515;Parent=Msa0245520-mRNA-1
chr2_2	exon	25281459	25281644	25281459	ID=Msa0245520-mRNA-1:exon:9514;Parent=Msa0245520-mRNA-1
chr2_2	exon	25280913	25281187	25280913	ID=Msa0245520-mRNA-1:exon:9513;Parent=Msa0245520-mRNA-1
chr2_2	CDS	25282807	25283358	25282807	ID=Msa0245520-mRNA-1:cds;Parent=Msa0245520-mRNA-1
chr2_2	CDS	25281786	25282533	25281786	ID=Msa0245520-mRNA-1:cds;Parent=Msa0245520-mRNA-1
chr2_2	CDS	25281459	25281644	25281459	ID=Msa0245520-mRNA-1:cds;Parent=Msa0245520-mRNA-1
chr2_2	CDS	25280913	25281187	25280913	ID=Msa0245520-mRNA-1:cds;Parent=Msa0245520-mRNA-1

Gene Sequence

>Msa0245520

ATGATGTACTTGAGAAGTGGATTCTCTGAATATTCAAATGAAATCAGCAACAACACTGGCAGTGCTAGTGAGTTATGCTGCACAACAGCACCAAATTCAGCTATCACTACTTCACAAGATATCATCACAATCACACAACCACCGATCCGTCTATCAGACAATATAGCTTCAATACTAAATGATACAGCGTTTGACTTCTTTTCCGATGCAAAGATCATTGCCAGAGATGGTCGAGAAGTTTCTGTGCACCGGTGCATTTTGTCTGCGAGGAGTAGTTTCTTTAAGGATGTTTTTAAGGGAAAGAAAGAAACGACGCTGCAACTGAAGGAAGTGGCTAAGGATTATGATGTTGGGTTTGAAGCGCTTAACGTTGTTCTGCGTTATTTGTATAGTGGGAGAGTTGATAATCATCATTTGTCTGCTAAAGATGTTTGTGTTTGTGTGGATGATGATTGTTTACACTTTGGTTGTTGGCCTGTTGTTGATTTCATGCTTCAACTTCTCTATGCTTCATTCACCTTTCAAATTTCTGAATTGCTTGCTCTTTATCAGGATCATCTACTAGACATTCTTGACAAAATGGCAATAGATGACATGTTGGTGGTTTTTTCTATGGCAAACATTTGTGGTGAAACATGTGATAAACTACTAACAAGATGTACAGAGATAATAGTTGAATCTAATGTTGATATAACCACTCTTGAAAAATCACTGCCTCAACCTGTAGTGAAACAAGTAATATACAAACGCAAACAACTCGGCTTAGACATGTATGAAACCGTAAATCTTCTAGACAAACATGTCACCAGAATACATAGAGCTTTAGATTCAGATGATGTAGAATTAGTAAGGTTGCTTTTGAAAGAAGGACACACTACTCTAGATGAGGCTCATGCACTTCACTATGCTGTTGCTTATTGTGATGTCAAAACCACTACTGAGCTTCTTGATCTTGGACTTGCCGATGTAAATCATAAAAATCTTAGGGGCTATAGCTTGCTACACGTTGCTGCGAAGAGAAAAGAGCCGAAAATTATTGTATCTTTGTTAACGAAGGGAGCTCAACCTTCTGAACTCACTTTCGATGGCAGAAAAGCTCTTCAAATTTCAAAGCGTAGTACGAAAGCTGTGGATTATTATAAATCTACTGAGGAAGGAAAGGTTTCTTCGAATGATCGATTGTGTATCGAGATATTGGAGCAAGCTGAGAGAAGGGAGCCTTTACATGGTGAGGCATCTCTTTCTCTTGCTAAGGCAGGGGATGATTTACGTATGAAATTGTTGTACCTAGAAAACCGAGTTGGACTAGCAAAACTTTTGTTTCCGATGGAAGCAAAGGTTGTGATGGATATCAATCCAATTGATGGCACATCTGAATTTACTCCGAATTTGGGTGGTTGCCAGAGGACAACTATGGACTTGAATGAGGCACCATTTAAAATAAAAGAGGAGCATCTAATTCGGATGAAGGCGTTGTCTAGAGCAGTGGAGTTGGGGAAACGGTTCTTTCCTCGTTGCTCAGAAGTGTTGAACAAGATCATGGATGCCGATGACCTATCGCAGCTTGCATGCATGGGTCATGACAGTCCCGAAGATCGACAAGTGAAGCGCAGACGATACGCGGAGCTACAAGAAGTTCTTAATAAGGTCTTCCATGAGGACAAAGAGGAGTTTGATAAATCTGGCATGTCTTCATCATCCTCATCCACGTCAATAGGAAAGTCAAGGGCTAATAATAGTATGATAGCAATGAATCATTGA

Protein sequence

>Msa0245520

MMYLRSGFSEYSNEISNNTGSASELCCTTAPNSAITTSQDIITITQPPIRLSDNIASILNDTAFDFFSDAKIIARDGREVSVHRCILSARSSFFKDVFKGKKETTLQLKEVAKDYDVGFEALNVVLRYLYSGRVDNHHLSAKDVCVCVDDDCLHFGCWPVVDFMLQLLYASFTFQISELLALYQDHLLDILDKMAIDDMLVVFSMANICGETCDKLLTRCTEIIVESNVDITTLEKSLPQPVVKQVIYKRKQLGLDMYETVNLLDKHVTRIHRALDSDDVELVRLLLKEGHTTLDEAHALHYAVAYCDVKTTTELLDLGLADVNHKNLRGYSLLHVAAKRKEPKIIVSLLTKGAQPSELTFDGRKALQISKRSTKAVDYYKSTEEGKVSSNDRLCIEILEQAERREPLHGEASLSLAKAGDDLRMKLLYLENRVGLAKLLFPMEAKVVMDINPIDGTSEFTPNLGGCQRTTMDLNEAPFKIKEEHLIRMKALSRAVELGKRFFPRCSEVLNKIMDADDLSQLACMGHDSPEDRQVKRRRYAELQEVLNKVFHEDKEEFDKSGMSSSSSSTSIGKSRANNSMIAMNH*