Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246080 | KEH37561.1 | 93.989 | 366 | 11 | 4 | 2 | 366 | 1 | 356 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246080 | sp|A2XA73|GRF1_ORYSI | 36.524 | 397 | 192 | 14 | 7 | 363 | 17 | 393 | 3.48e-58 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246080 | A0A072V7F0 | 93.989 | 366 | 11 | 4 | 2 | 366 | 1 | 356 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0246080 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246080 | MtrunA17_Chr2g0300511 | 94.215 | 363 | 10 | 4 | 2 | 363 | 1 | 353 | 0.0 | 691 |
| Msa0246080 | MtrunA17_Chr4g0070591 | 62.887 | 388 | 98 | 14 | 1 | 364 | 1 | 366 | 8.82e-146 | 417 |
| Msa0246080 | MtrunA17_Chr8g0343881 | 45.559 | 349 | 156 | 12 | 4 | 335 | 7 | 338 | 1.56e-70 | 224 |
| Msa0246080 | MtrunA17_Chr4g0021261 | 39.601 | 351 | 148 | 13 | 8 | 349 | 25 | 320 | 2.03e-59 | 195 |
| Msa0246080 | MtrunA17_Chr1g0152191 | 57.983 | 119 | 42 | 2 | 6 | 120 | 142 | 256 | 7.85e-41 | 152 |
| Msa0246080 | MtrunA17_Chr5g0409471 | 60.177 | 113 | 29 | 2 | 8 | 120 | 16 | 112 | 1.38e-40 | 145 |
| Msa0246080 | MtrunA17_Chr7g0265931 | 54.198 | 131 | 45 | 4 | 5 | 126 | 68 | 192 | 2.41e-35 | 133 |
| Msa0246080 | MtrunA17_Chr3g0127641 | 48.246 | 114 | 37 | 3 | 8 | 121 | 112 | 203 | 1.79e-27 | 113 |
| Msa0246080 | MtrunA17_Chr8g0351521 | 39.375 | 160 | 68 | 5 | 4 | 159 | 50 | 184 | 2.35e-23 | 100 |
| Msa0246080 | MtrunA17_Chr8g0351521 | 66.667 | 39 | 13 | 0 | 76 | 114 | 302 | 340 | 9.27e-13 | 68.9 |
| Msa0246080 | MtrunA17_Chr8g0351291 | 64.103 | 39 | 14 | 0 | 76 | 114 | 51 | 89 | 1.01e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246080 | AT3G13960.1 | 71.681 | 113 | 28 | 2 | 8 | 120 | 16 | 124 | 1.63e-55 | 187 |
| Msa0246080 | AT2G06200.1 | 64.167 | 120 | 36 | 2 | 6 | 118 | 4 | 123 | 2.53e-47 | 161 |
| Msa0246080 | AT2G06200.2 | 61.600 | 125 | 41 | 2 | 1 | 118 | 38 | 162 | 2.74e-47 | 162 |
| Msa0246080 | AT4G37740.1 | 58.120 | 117 | 41 | 4 | 6 | 121 | 162 | 271 | 6.37e-39 | 145 |
| Msa0246080 | AT2G36400.1 | 56.198 | 121 | 50 | 2 | 9 | 128 | 77 | 195 | 5.07e-37 | 138 |
| Msa0246080 | AT2G22840.1 | 54.545 | 121 | 47 | 4 | 1 | 120 | 126 | 239 | 4.02e-34 | 132 |
| Msa0246080 | AT3G52910.1 | 55.172 | 116 | 44 | 4 | 9 | 120 | 83 | 194 | 2.39e-33 | 128 |
| Msa0246080 | AT2G06200.3 | 92.157 | 51 | 2 | 1 | 70 | 118 | 1 | 51 | 2.73e-26 | 103 |
| Msa0246080 | AT5G53660.1 | 48.246 | 114 | 38 | 2 | 7 | 120 | 58 | 150 | 1.14e-25 | 106 |
| Msa0246080 | AT4G24150.3 | 44.444 | 117 | 55 | 2 | 9 | 120 | 112 | 223 | 9.95e-24 | 102 |
| Msa0246080 | AT4G24150.2 | 44.444 | 117 | 55 | 2 | 9 | 120 | 150 | 261 | 1.45e-23 | 102 |
| Msa0246080 | AT4G24150.1 | 40.288 | 139 | 54 | 3 | 9 | 120 | 150 | 286 | 3.85e-23 | 100 |
| Msa0246080 | AT2G45480.2 | 40.496 | 121 | 55 | 3 | 4 | 117 | 19 | 129 | 6.76e-19 | 86.7 |
| Msa0246080 | AT2G45480.3 | 40.496 | 121 | 55 | 3 | 4 | 117 | 19 | 129 | 3.32e-18 | 85.9 |
| Msa0246080 | AT2G45480.3 | 43.478 | 92 | 41 | 3 | 56 | 147 | 289 | 369 | 1.07e-13 | 72.4 |
| Msa0246080 | AT2G45480.1 | 40.496 | 121 | 55 | 3 | 4 | 117 | 17 | 127 | 3.58e-18 | 85.9 |
| Msa0246080 | AT2G45480.1 | 43.478 | 92 | 41 | 3 | 56 | 147 | 287 | 367 | 1.10e-13 | 72.4 |
Find 59 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGGATTGTTGCAAAT+TGG | 0.210488 | 2_2:+26469648 | None:intergenic |
| TGCCATTGTGATGGAGTAAA+AGG | 0.243712 | 2_2:+26470798 | None:intergenic |
| CTTTCACAATATTTAGAATC+TGG | 0.287060 | 2_2:+26469886 | None:intergenic |
| CAGTGTTGGTGTTGTTGATT+AGG | 0.322488 | 2_2:+26470654 | None:intergenic |
| ATTTACAAGTACATGGCTTC+TGG | 0.322552 | 2_2:-26470753 | Msa0246080:CDS |
| AAGAGATCAATGGCTTGATT+TGG | 0.334831 | 2_2:-26468547 | Msa0246080:CDS |
| AACTATCTGCAAATGGGTTT+AGG | 0.375973 | 2_2:-26469985 | Msa0246080:CDS |
| GCATTCTTCAAAGAACCTTC+TGG | 0.390445 | 2_2:-26468813 | Msa0246080:CDS |
| CTCAGAATAACAATGATTAC+AGG | 0.397575 | 2_2:-26469528 | Msa0246080:intron |
| TCAACTTTGTCATCTGGTAT+TGG | 0.398620 | 2_2:-26469604 | Msa0246080:CDS |
| GAAGAACAGATGGAAAGAAA+TGG | 0.403362 | 2_2:-26469930 | Msa0246080:CDS |
| AGGAAGGAAGTGGAACCATT+AGG | 0.419979 | 2_2:+26471188 | None:intergenic |
| GAAGAATTAGTTAATGATGC+AGG | 0.421290 | 2_2:+26469733 | None:intergenic |
| TTCATCGCTTCTTTGATGAA+TGG | 0.422547 | 2_2:-26468581 | Msa0246080:CDS |
| AATAATAATGCTTCATCACT+TGG | 0.426695 | 2_2:-26469781 | Msa0246080:CDS |
| TCAAGGTCAACTTTGTCATC+TGG | 0.430096 | 2_2:-26469610 | Msa0246080:CDS |
| TAGTAATAATAGAATAGAAT+AGG | 0.434485 | 2_2:+26470901 | None:intergenic |
| TGTATCCTCATACAACTTCA+AGG | 0.438634 | 2_2:-26469627 | Msa0246080:CDS |
| GGAAGTGGAACCATTAGGTT+AGG | 0.441836 | 2_2:+26471193 | None:intergenic |
| GATGGATAAAATAAAACTAA+TGG | 0.442644 | 2_2:+26471242 | None:intergenic |
| AAGCTTCTCTGCTTCATCAA+TGG | 0.443492 | 2_2:-26468775 | Msa0246080:CDS |
| CTTCTACATCTACCTGGCTC+TGG | 0.445022 | 2_2:+26469949 | None:intergenic |
| TGGATGGAACTATCTGCAAA+TGG | 0.447963 | 2_2:-26469992 | Msa0246080:CDS |
| CATTGATCTCTTCCTTTGTG+TGG | 0.452701 | 2_2:+26468558 | None:intergenic |
| GATTCTGTAACCTAACCTAA+TGG | 0.456910 | 2_2:-26471203 | Msa0246080:five_prime_UTR |
| TGATTTCTAGAAGTAAAAGT+TGG | 0.468844 | 2_2:+26468465 | None:intergenic |
| CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | 2_2:+26469842 | None:intergenic |
| TATCCTCAAAATTCTTGCTA+TGG | 0.474491 | 2_2:-26469673 | Msa0246080:CDS |
| GTTGACCTTGAAGTTGTATG+AGG | 0.489086 | 2_2:+26469622 | None:intergenic |
| CTCTGACAGTTCAATTACCT+TGG | 0.489345 | 2_2:+26468442 | None:intergenic |
| AAAAGGAACAGGTATGTGTA+TGG | 0.489899 | 2_2:-26468861 | Msa0246080:intron |
| CTAATGGTGAAAAGAAGATC+AGG | 0.491170 | 2_2:+26470717 | None:intergenic |
| AGTTGTATGAGGATACATAA+AGG | 0.504350 | 2_2:+26469633 | None:intergenic |
| GGATGGAACTATCTGCAAAT+GGG | 0.512539 | 2_2:-26469991 | Msa0246080:CDS |
| TAGAATAGAATAGGTGTTGG+TGG | 0.514595 | 2_2:+26470910 | None:intergenic |
| TCTTGTTCTTGTGTGTAAGA+TGG | 0.516895 | 2_2:+26471224 | None:intergenic |
| CATCAATGGAACATGATCCT+TGG | 0.521187 | 2_2:-26468761 | Msa0246080:CDS |
| AGCTCTTATTTACAAGTACA+TGG | 0.521532 | 2_2:-26470760 | Msa0246080:CDS |
| GGAAAATCATGAGTAGATGA+TGG | 0.530211 | 2_2:+26468486 | None:intergenic |
| GTGAGTGGTGTTAGTTGCCA+AGG | 0.556275 | 2_2:+26468744 | None:intergenic |
| GGTAGATGTAGAAGAACAGA+TGG | 0.565829 | 2_2:-26469940 | Msa0246080:CDS |
| TCAAGTTCTTGCCATTGTGA+TGG | 0.567945 | 2_2:+26470789 | None:intergenic |
| AAGAATTAGTTAATGATGCA+GGG | 0.570085 | 2_2:+26469734 | None:intergenic |
| TTATTATTATCAAGCACAAG+AGG | 0.571537 | 2_2:+26470844 | None:intergenic |
| TCTGTTCTTCTACATCTACC+TGG | 0.588963 | 2_2:+26469943 | None:intergenic |
| GCTGCTTTGAGTGTTCACTA+AGG | 0.590411 | 2_2:+26468631 | None:intergenic |
| TGTGAAAGACACATGCATAG+AGG | 0.590712 | 2_2:-26469871 | Msa0246080:CDS |
| AGAGTTGCTATCAAGAAACA+AGG | 0.594941 | 2_2:+26469555 | None:intergenic |
| TAATAGAATAGAATAGGTGT+TGG | 0.595917 | 2_2:+26470907 | None:intergenic |
| TTCATAGTACTGCTACCAGA+AGG | 0.597595 | 2_2:+26468798 | None:intergenic |
| CACACAAAGGAAGAGATCAA+TGG | 0.600035 | 2_2:-26468557 | Msa0246080:CDS |
| ATGGTGAAAAGAAGATCAGG+TGG | 0.634192 | 2_2:+26470720 | None:intergenic |
| TTTGATGAATGGCCACACAA+AGG | 0.634847 | 2_2:-26468570 | Msa0246080:CDS |
| AGAGAAAGGACTTACAGTGT+TGG | 0.638023 | 2_2:+26470640 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 2_2:-26469845 | Msa0246080:CDS |
| TTTACTTCTAGAAATCACCA+AGG | 0.657342 | 2_2:-26468459 | Msa0246080:CDS |
| GAGTTGCTATCAAGAAACAA+GGG | 0.701728 | 2_2:+26469556 | None:intergenic |
| TACTACTAGAGAGAAAGAGT+AGG | 0.709307 | 2_2:+26470947 | None:intergenic |
| GAAGAAGAACTCATAGTGAG+TGG | 0.729587 | 2_2:+26468729 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAATAATAGAATAGAAT+AGG | + | chr2_2:26468843-26468862 | None:intergenic | 15.0% |
| !!! | ATAGTTTTTTTAGACAAATT+TGG | - | chr2_2:26469309-26469328 | Msa0246080:intron | 15.0% |
| !! | TATAGAGATAATTTAGTTAA+AGG | - | chr2_2:26469655-26469674 | Msa0246080:CDS | 15.0% |
| !!! | TTATTTTGATTTTTTTCAGT+TGG | - | chr2_2:26469729-26469748 | Msa0246080:CDS | 15.0% |
| !! | GATGGATAAAATAAAACTAA+TGG | + | chr2_2:26468502-26468521 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTGTTAGAGGA+AGG | + | chr2_2:26468572-26468591 | None:intergenic | 20.0% |
| !!! | TCTCTTATTTTTTTTGTTAG+AGG | + | chr2_2:26468576-26468595 | None:intergenic | 20.0% |
| !! | TAAACATATGAATATAGAGA+GGG | + | chr2_2:26469127-26469146 | None:intergenic | 20.0% |
| !! | TTTGATATAGTATACATCTT+CGG | - | chr2_2:26469446-26469465 | Msa0246080:intron | 20.0% |
| !! | TTAGCAAAAAACATAGTATT+TGG | + | chr2_2:26469553-26469572 | None:intergenic | 20.0% |
| !!! | CTATACATTCATAATCTTTT+AGG | + | chr2_2:26469640-26469659 | None:intergenic | 20.0% |
| !! | AAAAAATCAAAATAACCCTT+TGG | + | chr2_2:26469724-26469743 | None:intergenic | 20.0% |
| !! | GAAATTACAAAAAGAATCTA+CGG | + | chr2_2:26470682-26470701 | None:intergenic | 20.0% |
| !! | GATACATTCAAAGAATATAA+TGG | - | chr2_2:26470702-26470721 | Msa0246080:CDS | 20.0% |
| !! | AAAAAAAAGAGAGATCAAAA+TGG | - | chr2_2:26470763-26470782 | Msa0246080:CDS | 20.0% |
| !!! | AACCACTTTTTGATAACTTT+TGG | - | chr2_2:26468610-26468629 | Msa0246080:CDS | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr2_2:26468695-26468714 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr2_2:26468708-26468727 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr2_2:26468707-26468726 | Msa0246080:CDS | 25.0% |
| ! | TCAACAAAGTTGTCATTAAA+TGG | - | chr2_2:26468733-26468752 | Msa0246080:CDS | 25.0% |
| ! | TAATAGAATAGAATAGGTGT+TGG | + | chr2_2:26468837-26468856 | None:intergenic | 25.0% |
| ! | TTATTATTATCAAGCACAAG+AGG | + | chr2_2:26468900-26468919 | None:intergenic | 25.0% |
| ! | GTAAACATATGAATATAGAG+AGG | + | chr2_2:26469128-26469147 | None:intergenic | 25.0% |
| !!! | TATACTATATCAAAGGTGTT+AGG | + | chr2_2:26469440-26469459 | None:intergenic | 25.0% |
| ! | GAAGATGTATACTATATCAA+AGG | + | chr2_2:26469447-26469466 | None:intergenic | 25.0% |
| ! | TTGATATAGTATACATCTTC+GGG | - | chr2_2:26469447-26469466 | Msa0246080:intron | 25.0% |
| !!! | TACTATGTTTTTTGCTAACA+TGG | - | chr2_2:26469555-26469574 | Msa0246080:CDS | 25.0% |
| !!! | TTTGATTTTTTTCAGTTGGA+TGG | - | chr2_2:26469733-26469752 | Msa0246080:CDS | 25.0% |
| !! | CTTTCACAATATTTAGAATC+TGG | + | chr2_2:26469858-26469877 | None:intergenic | 25.0% |
| ! | AATAATAATGCTTCATCACT+TGG | - | chr2_2:26469960-26469979 | Msa0246080:CDS | 25.0% |
| ! | AAGAATTAGTTAATGATGCA+GGG | + | chr2_2:26470010-26470029 | None:intergenic | 25.0% |
| !!! | AAGAATTTTGAGGATAGTTT+TGG | + | chr2_2:26470064-26470083 | None:intergenic | 25.0% |
| ! | AAAACACTTATGTATAAGCA+TGG | + | chr2_2:26470251-26470270 | None:intergenic | 25.0% |
| !!! | TTTCGAGTAAATAGTCATTT+TGG | - | chr2_2:26470284-26470303 | Msa0246080:intron | 25.0% |
| ! | ACTTCACTACAAAAATAACA+CGG | + | chr2_2:26470332-26470351 | None:intergenic | 25.0% |
| !!! | ACTTTTGTTAGTTTGTTTGT+TGG | - | chr2_2:26470384-26470403 | Msa0246080:intron | 25.0% |
| ! | TTTGAATTACTAACAAAGAC+TGG | - | chr2_2:26470415-26470434 | Msa0246080:intron | 25.0% |
| !!! | TTCGAGTTAAATAGTCATTT+TGG | - | chr2_2:26470559-26470578 | Msa0246080:intron | 25.0% |
| !! | GTTTTCTTCCTTTGTAAAAA+AGG | - | chr2_2:26470863-26470882 | Msa0246080:five_prime_UTR | 25.0% |
| !! | TGATTTCTAGAAGTAAAAGT+TGG | + | chr2_2:26471279-26471298 | None:intergenic | 25.0% |
| GTCCAAAAGTTATCAAAAAG+TGG | + | chr2_2:26468615-26468634 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr2_2:26468682-26468701 | None:intergenic | 30.0% | |
| ! | AGCTCTTATTTACAAGTACA+TGG | - | chr2_2:26468981-26469000 | Msa0246080:intron | 30.0% |
| CACCATTAGAAAAAGCTATT+TGG | - | chr2_2:26469038-26469057 | Msa0246080:intron | 30.0% | |
| !! | GTCCAAATAGCTTTTTCTAA+TGG | + | chr2_2:26469043-26469062 | None:intergenic | 30.0% |
| GAAGAATTAGTTAATGATGC+AGG | + | chr2_2:26470011-26470030 | None:intergenic | 30.0% | |
| TATCCTCAAAATTCTTGCTA+TGG | - | chr2_2:26470068-26470087 | Msa0246080:intron | 30.0% | |
| CATAAAGGATTGTTGCAAAT+TGG | + | chr2_2:26470096-26470115 | None:intergenic | 30.0% | |
| AGTTGTATGAGGATACATAA+AGG | + | chr2_2:26470111-26470130 | None:intergenic | 30.0% | |
| CTCAGAATAACAATGATTAC+AGG | - | chr2_2:26470213-26470232 | Msa0246080:intron | 30.0% | |
| !! | ATTTTGGTATCTGATTGTGT+AGG | - | chr2_2:26470300-26470319 | Msa0246080:intron | 30.0% |
| ! | TCGTAAGTTAGTTTGGTAAT+CGG | - | chr2_2:26470598-26470617 | Msa0246080:intron | 30.0% |
| ! | TTTTGATCTCTTAATGTGTG+AGG | + | chr2_2:26470730-26470749 | None:intergenic | 30.0% |
| CACACATTAAGAGATCAAAA+TGG | - | chr2_2:26470730-26470749 | Msa0246080:CDS | 30.0% | |
| ! | GAATTGTGATTGATTCTCTT+TGG | - | chr2_2:26470835-26470854 | Msa0246080:exon | 30.0% |
| TTCCTTTGTAAAAAAGGAAC+AGG | - | chr2_2:26470869-26470888 | Msa0246080:five_prime_UTR | 30.0% | |
| !!! | TACCTGTTCCTTTTTTACAA+AGG | + | chr2_2:26470874-26470893 | None:intergenic | 30.0% |
| ! | TTTACTTCTAGAAATCACCA+AGG | - | chr2_2:26471282-26471301 | Msa0246080:five_prime_UTR | 30.0% |
| TCTTGTTCTTGTGTGTAAGA+TGG | + | chr2_2:26468520-26468539 | None:intergenic | 35.0% | |
| GATTCTGTAACCTAACCTAA+TGG | - | chr2_2:26468538-26468557 | Msa0246080:CDS | 35.0% | |
| ! | TTTTTGTTAGAGGAAGGAAG+TGG | + | chr2_2:26468566-26468585 | None:intergenic | 35.0% |
| TACTACTAGAGAGAAAGAGT+AGG | + | chr2_2:26468797-26468816 | None:intergenic | 35.0% | |
| !! | TAGAATAGAATAGGTGTTGG+TGG | + | chr2_2:26468834-26468853 | None:intergenic | 35.0% |
| ! | TTCCTTTTACTCCATCACAA+TGG | - | chr2_2:26468941-26468960 | Msa0246080:intron | 35.0% |
| ATTTACAAGTACATGGCTTC+TGG | - | chr2_2:26468988-26469007 | Msa0246080:intron | 35.0% | |
| CTAATGGTGAAAAGAAGATC+AGG | + | chr2_2:26469027-26469046 | None:intergenic | 35.0% | |
| GGAAAAAGTCTTGAAGAAAG+AGG | + | chr2_2:26469069-26469088 | None:intergenic | 35.0% | |
| ! | TTTGGAGCTTCTGAAAATCA+CGG | + | chr2_2:26469535-26469554 | None:intergenic | 35.0% |
| AAATGAGTCTCTTTGACCAA+AGG | - | chr2_2:26469705-26469724 | Msa0246080:CDS | 35.0% | |
| AATGAGTCTCTTTGACCAAA+GGG | - | chr2_2:26469706-26469725 | Msa0246080:CDS | 35.0% | |
| ! | AACTATCTGCAAATGGGTTT+AGG | - | chr2_2:26469756-26469775 | Msa0246080:CDS | 35.0% |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr2_2:26469811-26469830 | Msa0246080:CDS | 35.0% | |
| !!! | GTTGTTTTTACAACTTCCAC+AGG | + | chr2_2:26469915-26469934 | None:intergenic | 35.0% |
| !! | TAATGATGCAGGGCTATTTT+TGG | + | chr2_2:26470000-26470019 | None:intergenic | 35.0% |
| ! | GAACCATAGCAAGAATTTTG+AGG | + | chr2_2:26470074-26470093 | None:intergenic | 35.0% |
| TGTATCCTCATACAACTTCA+AGG | - | chr2_2:26470114-26470133 | Msa0246080:intron | 35.0% | |
| TCAACTTTGTCATCTGGTAT+TGG | - | chr2_2:26470137-26470156 | Msa0246080:intron | 35.0% | |
| GAGTTGCTATCAAGAAACAA+GGG | + | chr2_2:26470188-26470207 | None:intergenic | 35.0% | |
| AGAGTTGCTATCAAGAAACA+AGG | + | chr2_2:26470189-26470208 | None:intergenic | 35.0% | |
| GTGTAACTCGTAAGTTAGTT+TGG | - | chr2_2:26470591-26470610 | Msa0246080:intron | 35.0% | |
| AAAAGGAACAGGTATGTGTA+TGG | - | chr2_2:26470880-26470899 | Msa0246080:five_prime_UTR | 35.0% | |
| TGTGTATGGACAAAAAGAAG+AGG | - | chr2_2:26470894-26470913 | Msa0246080:five_prime_UTR | 35.0% | |
| TTCATCGCTTCTTTGATGAA+TGG | - | chr2_2:26471160-26471179 | Msa0246080:intron | 35.0% | |
| AAGAGATCAATGGCTTGATT+TGG | - | chr2_2:26471194-26471213 | Msa0246080:five_prime_UTR | 35.0% | |
| GGAAAATCATGAGTAGATGA+TGG | + | chr2_2:26471258-26471277 | None:intergenic | 35.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr2_2:26468672-26468691 | None:intergenic | 40.0% | |
| ! | TGCCATTGTGATGGAGTAAA+AGG | + | chr2_2:26468946-26468965 | None:intergenic | 40.0% |
| TCAAGTTCTTGCCATTGTGA+TGG | + | chr2_2:26468955-26468974 | None:intergenic | 40.0% | |
| ATGGTGAAAAGAAGATCAGG+TGG | + | chr2_2:26469024-26469043 | None:intergenic | 40.0% | |
| !! | CAGTGTTGGTGTTGTTGATT+AGG | + | chr2_2:26469090-26469109 | None:intergenic | 40.0% |
| AGAGAAAGGACTTACAGTGT+TGG | + | chr2_2:26469104-26469123 | None:intergenic | 40.0% | |
| GAATATAGAGAGGGAGAGAA+AGG | + | chr2_2:26469118-26469137 | None:intergenic | 40.0% | |
| !! | TATCAAAGGTGTTAGGTCAG+TGG | + | chr2_2:26469433-26469452 | None:intergenic | 40.0% |
| TATACATCTTCGGGTGTGTT+TGG | - | chr2_2:26469456-26469475 | Msa0246080:intron | 40.0% | |
| ! | GTGCTTTTGTGTGTTGCAAA+CGG | + | chr2_2:26469486-26469505 | None:intergenic | 40.0% |
| ACGGTGTTTGATGGAAATCA+CGG | + | chr2_2:26469588-26469607 | None:intergenic | 40.0% | |
| GTTTGCAAAACGGTGTTTGA+TGG | + | chr2_2:26469597-26469616 | None:intergenic | 40.0% | |
| TTCGTACAGCGTTTGCAAAA+CGG | + | chr2_2:26469607-26469626 | None:intergenic | 40.0% | |
| TGGATGGAACTATCTGCAAA+TGG | - | chr2_2:26469749-26469768 | Msa0246080:CDS | 40.0% | |
| GGATGGAACTATCTGCAAAT+GGG | - | chr2_2:26469750-26469769 | Msa0246080:CDS | 40.0% | |
| AGAAAAATAGATCCAGAGCC+AGG | - | chr2_2:26469780-26469799 | Msa0246080:CDS | 40.0% | |
| TCTGTTCTTCTACATCTACC+TGG | + | chr2_2:26469801-26469820 | None:intergenic | 40.0% | |
| GGTAGATGTAGAAGAACAGA+TGG | - | chr2_2:26469801-26469820 | Msa0246080:CDS | 40.0% | |
| TGTGAAAGACACATGCATAG+AGG | - | chr2_2:26469870-26469889 | Msa0246080:CDS | 40.0% | |
| GTTGACCTTGAAGTTGTATG+AGG | + | chr2_2:26470122-26470141 | None:intergenic | 40.0% | |
| TCAAGGTCAACTTTGTCATC+TGG | - | chr2_2:26470131-26470150 | Msa0246080:intron | 40.0% | |
| TGGTATCTGATTGTGTAGGT+CGG | - | chr2_2:26470304-26470323 | Msa0246080:intron | 40.0% | |
| GTATGGACAAAAAGAAGAGG+TGG | - | chr2_2:26470897-26470916 | Msa0246080:five_prime_UTR | 40.0% | |
| GCATTCTTCAAAGAACCTTC+TGG | - | chr2_2:26470928-26470947 | Msa0246080:five_prime_UTR | 40.0% | |
| TTCATAGTACTGCTACCAGA+AGG | + | chr2_2:26470946-26470965 | None:intergenic | 40.0% | |
| AAGCTTCTCTGCTTCATCAA+TGG | - | chr2_2:26470966-26470985 | Msa0246080:five_prime_UTR | 40.0% | |
| CATCAATGGAACATGATCCT+TGG | - | chr2_2:26470980-26470999 | Msa0246080:intron | 40.0% | |
| GAAGAAGAACTCATAGTGAG+TGG | + | chr2_2:26471015-26471034 | None:intergenic | 40.0% | |
| ! | AAGCGATGAACAGTTTTCTG+AGG | + | chr2_2:26471150-26471169 | None:intergenic | 40.0% |
| TTTGATGAATGGCCACACAA+AGG | - | chr2_2:26471171-26471190 | Msa0246080:intron | 40.0% | |
| CATTGATCTCTTCCTTTGTG+TGG | + | chr2_2:26471186-26471205 | None:intergenic | 40.0% | |
| CACACAAAGGAAGAGATCAA+TGG | - | chr2_2:26471184-26471203 | Msa0246080:five_prime_UTR | 40.0% | |
| GGAAGTGGAACCATTAGGTT+AGG | + | chr2_2:26468551-26468570 | None:intergenic | 45.0% | |
| AGGAAGGAAGTGGAACCATT+AGG | + | chr2_2:26468556-26468575 | None:intergenic | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr2_2:26469896-26469915 | Msa0246080:CDS | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr2_2:26469902-26469921 | None:intergenic | 45.0% | |
| ! | GCTGCTTTGAGTGTTCACTA+AGG | + | chr2_2:26471113-26471132 | None:intergenic | 45.0% |
| !!! | TTTTTAAAAAAAAATTAAGA+AGG | + | chr2_2:26469205-26469224 | None:intergenic | 5.0% |
| CTTCTACATCTACCTGGCTC+TGG | + | chr2_2:26469795-26469814 | None:intergenic | 50.0% | |
| ! | GTGAGTGGTGTTAGTTGCCA+AGG | + | chr2_2:26471000-26471019 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 26468452 | 26471311 | 26468452 | ID=Msa0246080;Name=Msa0246080 |
| chr2_2 | mRNA | 26468452 | 26471311 | 26468452 | ID=Msa0246080-mRNA-1;Parent=Msa0246080;Name=Msa0246080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=280|1|0.75|1|0.66|0.5|4|0|366 |
| chr2_2 | exon | 26468452 | 26468878 | 26468452 | ID=Msa0246080-mRNA-1:exon:9794;Parent=Msa0246080-mRNA-1 |
| chr2_2 | exon | 26469529 | 26470015 | 26469529 | ID=Msa0246080-mRNA-1:exon:9793;Parent=Msa0246080-mRNA-1 |
| chr2_2 | exon | 26470655 | 26470985 | 26470655 | ID=Msa0246080-mRNA-1:exon:9792;Parent=Msa0246080-mRNA-1 |
| chr2_2 | exon | 26471176 | 26471311 | 26471176 | ID=Msa0246080-mRNA-1:exon:9791;Parent=Msa0246080-mRNA-1 |
| chr2_2 | five_prime_UTR | 26471176 | 26471311 | 26471176 | ID=Msa0246080-mRNA-1:five_prime_utr;Parent=Msa0246080-mRNA-1 |
| chr2_2 | five_prime_UTR | 26470842 | 26470985 | 26470842 | ID=Msa0246080-mRNA-1:five_prime_utr;Parent=Msa0246080-mRNA-1 |
| chr2_2 | CDS | 26470655 | 26470841 | 26470655 | ID=Msa0246080-mRNA-1:cds;Parent=Msa0246080-mRNA-1 |
| chr2_2 | CDS | 26469529 | 26470015 | 26469529 | ID=Msa0246080-mRNA-1:cds;Parent=Msa0246080-mRNA-1 |
| chr2_2 | CDS | 26468452 | 26468878 | 26468452 | ID=Msa0246080-mRNA-1:cds;Parent=Msa0246080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
