Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247490 | AES65705.1 | 87.454 | 271 | 34 | 0 | 3 | 273 | 11 | 281 | 1.09e-173 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247490 | sp|Q99091|CPRF3_PETCR | 41.071 | 112 | 55 | 3 | 156 | 264 | 169 | 272 | 2.50e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247490 | G7IST9 | 87.454 | 271 | 34 | 0 | 3 | 273 | 11 | 281 | 5.22e-174 | 490 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0247490 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247490 | MtrunA17_Chr1g0162721 | 61.812 | 309 | 69 | 8 | 12 | 273 | 1 | 307 | 6.07e-118 | 340 |
| Msa0247490 | MtrunA17_Chr2g0302481 | 66.981 | 212 | 44 | 2 | 62 | 273 | 3 | 188 | 1.10e-92 | 271 |
| Msa0247490 | MtrunA17_Chr2g0302501 | 85.470 | 117 | 17 | 0 | 3 | 119 | 11 | 127 | 1.85e-71 | 216 |
| Msa0247490 | MtrunA17_Chr4g0065261 | 61.798 | 89 | 33 | 1 | 185 | 273 | 88 | 175 | 8.16e-27 | 102 |
| Msa0247490 | MtrunA17_Chr8g0373571 | 30.726 | 179 | 101 | 3 | 108 | 267 | 165 | 339 | 5.05e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247490 | AT4G36730.2 | 36.190 | 105 | 61 | 1 | 163 | 267 | 201 | 299 | 1.23e-14 | 73.2 |
| Msa0247490 | AT4G36730.1 | 36.190 | 105 | 61 | 1 | 163 | 267 | 203 | 301 | 1.38e-14 | 72.8 |
| Msa0247490 | AT2G35530.1 | 42.254 | 71 | 41 | 0 | 185 | 255 | 302 | 372 | 6.60e-12 | 65.5 |
Find 51 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGACTGGCACAGAATTT+AGG | 0.187053 | 2_2:-29836623 | Msa0247490:CDS |
| GATAATAATTTGTTGAAATC+AGG | 0.247642 | 2_2:+29837159 | None:intergenic |
| GATTTCAACAAATTATTATC+TGG | 0.265337 | 2_2:-29837156 | Msa0247490:CDS |
| TCAATTTGTGATGGTATCTT+TGG | 0.288812 | 2_2:-29837607 | Msa0247490:CDS |
| CTGGACTGGCACAGAATTTA+GGG | 0.292786 | 2_2:-29836622 | Msa0247490:CDS |
| TGGCAGACCTTACAATTTCT+TGG | 0.294838 | 2_2:-29837813 | Msa0247490:CDS |
| CGGAAATCTAACATGATTAC+TGG | 0.322511 | 2_2:-29836754 | Msa0247490:CDS |
| GTTTCTTCTGTGTACCATTT+CGG | 0.323377 | 2_2:+29837182 | None:intergenic |
| AGATTTCCGCTTCGTGCTTA+AGG | 0.327244 | 2_2:+29836768 | None:intergenic |
| ACTGGCGAATCAAGAGAATA+TGG | 0.350738 | 2_2:-29837105 | Msa0247490:CDS |
| CACTCTTAAGGAAGAAAATT+CGG | 0.382443 | 2_2:-29835249 | Msa0247490:CDS |
| TGGAACAGGAAGAGCTAGTT+AGG | 0.389858 | 2_2:-29834736 | Msa0247490:intron |
| CACAAGTTTCACGAGCTTGA+TGG | 0.397225 | 2_2:-29837858 | Msa0247490:CDS |
| GATTTCCGCTTCGTGCTTAA+GGG | 0.399845 | 2_2:+29836769 | None:intergenic |
| AAGATCAAAGTTAAAGAAAC+AGG | 0.415399 | 2_2:-29835475 | Msa0247490:intron |
| AAGATATCTGCAATTGATTC+TGG | 0.415707 | 2_2:+29834704 | None:intergenic |
| CACACCTATGCTACCACATT+GGG | 0.421663 | 2_2:-29837668 | Msa0247490:CDS |
| AAGAAAGAATCCATTCCATT+TGG | 0.432084 | 2_2:-29837833 | Msa0247490:CDS |
| CCAGTCATTAAACTTACATC+AGG | 0.439376 | 2_2:+29837123 | None:intergenic |
| ACAAGTTTCACGAGCTTGAT+GGG | 0.447176 | 2_2:-29837857 | Msa0247490:CDS |
| TGTGGTAGCATAGGTGTGTT+TGG | 0.450209 | 2_2:+29837673 | None:intergenic |
| TTTGTTGTAGAAAATCCATC+TGG | 0.453963 | 2_2:-29836641 | Msa0247490:intron |
| TCAAAAGATAGACACTCTTA+AGG | 0.455063 | 2_2:-29835261 | Msa0247490:CDS |
| ATAATAATTTGTTGAAATCA+GGG | 0.478153 | 2_2:+29837160 | None:intergenic |
| GAAGAGCTAGTTAGGATGTA+TGG | 0.483100 | 2_2:-29834728 | Msa0247490:CDS |
| AATATTTATTCAGGAACGTA+CGG | 0.487079 | 2_2:-29837885 | None:intergenic |
| TGAGGCACCAAGAAATTGTA+AGG | 0.489679 | 2_2:+29837806 | None:intergenic |
| TATCTTAAACTGTTTCAAGT+AGG | 0.507744 | 2_2:+29834671 | None:intergenic |
| AAATTGTAAGGTCTGCCAAA+TGG | 0.515741 | 2_2:+29837818 | None:intergenic |
| TGCTCTGAATCAATTTGTGA+TGG | 0.529409 | 2_2:-29837616 | Msa0247490:CDS |
| ATATTTATTCAGGAACGTAC+GGG | 0.535447 | 2_2:-29837884 | None:intergenic |
| AAATTCTGTGCCAGTCCAGA+TGG | 0.537974 | 2_2:+29836626 | None:intergenic |
| GGAAATCTAACATGATTACT+GGG | 0.546159 | 2_2:-29836753 | Msa0247490:CDS |
| CAATGAAAACGATTCTATTG+AGG | 0.546332 | 2_2:-29835177 | Msa0247490:intron |
| GTAAGGTCTGCCAAATGGAA+TGG | 0.548289 | 2_2:+29837823 | None:intergenic |
| TCTAACATGATTACTGGGGA+TGG | 0.558549 | 2_2:-29836748 | Msa0247490:intron |
| GTATCCCAATGTGGTAGCAT+AGG | 0.563643 | 2_2:+29837664 | None:intergenic |
| ACACACCTATGCTACCACAT+TGG | 0.564050 | 2_2:-29837669 | Msa0247490:CDS |
| CCTGATGTAAGTTTAATGAC+TGG | 0.574077 | 2_2:-29837123 | Msa0247490:CDS |
| ACATTGGGATACATCTATGC+AGG | 0.593850 | 2_2:-29837653 | Msa0247490:CDS |
| TGTAGAAAATCCATCTGGAC+TGG | 0.593923 | 2_2:-29836636 | Msa0247490:intron |
| CATGATTTACTGACATCTTG+AGG | 0.595565 | 2_2:+29837788 | None:intergenic |
| CAAGTTTCACGAGCTTGATG+GGG | 0.617197 | 2_2:-29837856 | Msa0247490:CDS |
| GAATTTAGGGATAGTCGTCA+AGG | 0.625657 | 2_2:-29836609 | Msa0247490:CDS |
| GGAAGCAAGAGATTGACAGA+TGG | 0.638909 | 2_2:-29836934 | Msa0247490:CDS |
| TATGTGCGCAGTGCAGCAAG+TGG | 0.644014 | 2_2:-29836955 | Msa0247490:intron |
| GAAATCTAACATGATTACTG+GGG | 0.696860 | 2_2:-29836752 | Msa0247490:CDS |
| ATTCTCCCTTAAGCACGAAG+CGG | 0.702517 | 2_2:-29836774 | Msa0247490:CDS |
| TGCATAGATGTATCCCAATG+TGG | 0.712115 | 2_2:+29837655 | None:intergenic |
| ATAGGGATGGAACCTCAGTG+AGG | 0.780216 | 2_2:-29837056 | Msa0247490:intron |
| GAACAATCTATACCTCACTG+AGG | 0.803207 | 2_2:+29837044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTATATAAATAAG+TGG | - | chr2_2:29835681-29835700 | Msa0247490:intron | 10.0% |
| !! | CTAATTTCTTAAATTATTAT+CGG | + | chr2_2:29836548-29836567 | None:intergenic | 10.0% |
| !!! | TTTTTTTATCATAGTTTCTA+TGG | - | chr2_2:29835096-29835115 | Msa0247490:intron | 15.0% |
| !!! | TATGGTATTCATTTTATATT+TGG | - | chr2_2:29835114-29835133 | Msa0247490:intron | 15.0% |
| !!! | ATAATAATTTGTTGAAATCA+GGG | + | chr2_2:29835400-29835419 | None:intergenic | 15.0% |
| !!! | TAAATGAAAAGTTTTTTTTG+TGG | - | chr2_2:29836046-29836065 | Msa0247490:intron | 15.0% |
| !! | TTTGTTTAAAAATTCTACTA+CGG | + | chr2_2:29836218-29836237 | None:intergenic | 15.0% |
| !! | TAAAATTGAACAAATAAGAA+GGG | + | chr2_2:29837422-29837441 | None:intergenic | 15.0% |
| !! | ATAAAATTGAACAAATAAGA+AGG | + | chr2_2:29837423-29837442 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTCAATTAGAAAA+AGG | - | chr2_2:29837484-29837503 | Msa0247490:intron | 15.0% |
| !! | TTAATTAAACAAAGAAACAA+TGG | - | chr2_2:29837541-29837560 | Msa0247490:intron | 15.0% |
| !!! | AGTTTTTTTTTCTACGTAAA+AGG | + | chr2_2:29834990-29835009 | None:intergenic | 20.0% |
| !!! | TATATTTGGTGTATATTTAG+TGG | - | chr2_2:29835128-29835147 | Msa0247490:intron | 20.0% |
| !! | GAATTCATATTCTTTATAGT+TGG | - | chr2_2:29835191-29835210 | Msa0247490:CDS | 20.0% |
| !! | TCATAATACACAATTCAATA+TGG | + | chr2_2:29835295-29835314 | None:intergenic | 20.0% |
| !!! | GATAATAATTTGTTGAAATC+AGG | + | chr2_2:29835401-29835420 | None:intergenic | 20.0% |
| !! | GATTTCAACAAATTATTATC+TGG | - | chr2_2:29835401-29835420 | Msa0247490:intron | 20.0% |
| !! | GTAACATAGATTTAGAAAAA+TGG | - | chr2_2:29836654-29836673 | Msa0247490:intron | 20.0% |
| !! | ATGTAAAAAGAAAAAGATGT+TGG | - | chr2_2:29837131-29837150 | Msa0247490:CDS | 20.0% |
| !! | AAAATTGAACAAATAAGAAG+GGG | + | chr2_2:29837421-29837440 | None:intergenic | 20.0% |
| !! | ACAAATATTAGAAAACAAGA+TGG | + | chr2_2:29837510-29837529 | None:intergenic | 20.0% |
| ! | AAGTGAAGAATTGTGATAAA+AGG | + | chr2_2:29835039-29835058 | None:intergenic | 25.0% |
| !! | TGGAATTTTCATATCACTTT+AGG | - | chr2_2:29835148-29835167 | Msa0247490:intron | 25.0% |
| !! | GGAATTTTCATATCACTTTA+GGG | - | chr2_2:29835149-29835168 | Msa0247490:intron | 25.0% |
| !! | GGGATTTTTCATATTTTCTA+TGG | - | chr2_2:29835169-29835188 | Msa0247490:intron | 25.0% |
| !!! | ACAAAAGTGTTTATGCATTT+TGG | - | chr2_2:29835329-29835348 | Msa0247490:intron | 25.0% |
| ! | TTCTTCACCAAAAAATGATA+GGG | - | chr2_2:29835484-29835503 | Msa0247490:CDS | 25.0% |
| ! | CAGTAACAAAGTATGTTTAT+CGG | - | chr2_2:29835658-29835677 | Msa0247490:intron | 25.0% |
| !! | CAACTGTCACATAAAATTTT+CGG | - | chr2_2:29835726-29835745 | Msa0247490:intron | 25.0% |
| ! | TGATGCTCAACTAAAAAATA+TGG | - | chr2_2:29835993-29836012 | Msa0247490:intron | 25.0% |
| ! | ATGTGGACATCATAATAAAA+GGG | + | chr2_2:29836151-29836170 | None:intergenic | 25.0% |
| ! | TATGTGGACATCATAATAAA+AGG | + | chr2_2:29836152-29836171 | None:intergenic | 25.0% |
| ! | AAAAATTCTACTACGGTATA+GGG | + | chr2_2:29836211-29836230 | None:intergenic | 25.0% |
| ! | TAAAAATTCTACTACGGTAT+AGG | + | chr2_2:29836212-29836231 | None:intergenic | 25.0% |
| ! | AAAATTCATGTACTAACACA+TGG | + | chr2_2:29836496-29836515 | None:intergenic | 25.0% |
| ! | ACATAGATTTAGAAAAATGG+AGG | - | chr2_2:29836657-29836676 | Msa0247490:intron | 25.0% |
| ! | ATATTAGCATAATAGCATGT+AGG | + | chr2_2:29836727-29836746 | None:intergenic | 25.0% |
| ! | TATGCTAATATCACAAACAA+TGG | - | chr2_2:29836736-29836755 | Msa0247490:intron | 25.0% |
| ! | TACAAAGTTGGATTGATAAA+TGG | + | chr2_2:29836935-29836954 | None:intergenic | 25.0% |
| ! | AATAGGTAATTCTACAAAGT+TGG | + | chr2_2:29836947-29836966 | None:intergenic | 25.0% |
| ! | CAAAAGAAATGCAACTAAAT+AGG | + | chr2_2:29837002-29837021 | None:intergenic | 25.0% |
| ! | AAGATCAAAGTTAAAGAAAC+AGG | - | chr2_2:29837082-29837101 | Msa0247490:CDS | 25.0% |
| ! | CTAGGAAAAAAAAACTAGTT+GGG | + | chr2_2:29837168-29837187 | None:intergenic | 25.0% |
| ! | ACTAGGAAAAAAAAACTAGT+TGG | + | chr2_2:29837169-29837188 | None:intergenic | 25.0% |
| ! | CTGTTACAAATAGAGATTAA+AGG | + | chr2_2:29837605-29837624 | None:intergenic | 25.0% |
| ! | ACTCAAATTAGTAGCAATAT+TGG | + | chr2_2:29837789-29837808 | None:intergenic | 25.0% |
| AAGAAAGAATCCATTCCATT+TGG | - | chr2_2:29834724-29834743 | Msa0247490:CDS | 30.0% | |
| GATGTCAGTAAATCATGTTA+TGG | - | chr2_2:29834775-29834794 | Msa0247490:intron | 30.0% | |
| TCAATTTGTGATGGTATCTT+TGG | - | chr2_2:29834950-29834969 | Msa0247490:intron | 30.0% | |
| ATGAACGTTTCTTCAACTTA+GGG | - | chr2_2:29835263-29835282 | Msa0247490:CDS | 30.0% | |
| CTTCTTCACCAAAAAATGAT+AGG | - | chr2_2:29835483-29835502 | Msa0247490:CDS | 30.0% | |
| TGTTCTTGTTCTTGTTCTTA+TGG | - | chr2_2:29835531-29835550 | Msa0247490:CDS | 30.0% | |
| GGAAATCTAACATGATTACT+GGG | - | chr2_2:29835804-29835823 | Msa0247490:intron | 30.0% | |
| GAAATCTAACATGATTACTG+GGG | - | chr2_2:29835805-29835824 | Msa0247490:intron | 30.0% | |
| ! | TTTGTTGTAGAAAATCCATC+TGG | - | chr2_2:29835916-29835935 | Msa0247490:intron | 30.0% |
| !! | TTATAGGTGCTGTTTGATAT+TGG | - | chr2_2:29836350-29836369 | Msa0247490:intron | 30.0% |
| ! | GTACTATTTTCTCACACTTT+TGG | + | chr2_2:29836587-29836606 | None:intergenic | 30.0% |
| ATTGACACTTCAGATTATAC+AGG | + | chr2_2:29836629-29836648 | None:intergenic | 30.0% | |
| TAGATTTAGAAAAATGGAGG+TGG | - | chr2_2:29836660-29836679 | Msa0247490:intron | 30.0% | |
| ACATGTGATTATAACTATCG+TGG | + | chr2_2:29836807-29836826 | None:intergenic | 30.0% | |
| ATGAAAGGTTCATATATGAC+AGG | + | chr2_2:29836898-29836917 | None:intergenic | 30.0% | |
| AAAGTTGGATTGATAAATGG+TGG | + | chr2_2:29836932-29836951 | None:intergenic | 30.0% | |
| TGCAAGAAATGCAACTAAAT+AGG | + | chr2_2:29836964-29836983 | None:intergenic | 30.0% | |
| ! | TTAGTTGCATTTCTTTTGAC+AGG | - | chr2_2:29837004-29837023 | Msa0247490:intron | 30.0% |
| AGAAGTTAGATAATCAGACT+AGG | + | chr2_2:29837186-29837205 | None:intergenic | 30.0% | |
| TCAAAAGATAGACACTCTTA+AGG | - | chr2_2:29837296-29837315 | Msa0247490:intron | 30.0% | |
| CACTCTTAAGGAAGAAAATT+CGG | - | chr2_2:29837308-29837327 | Msa0247490:intron | 30.0% | |
| ! | CTCAATAGAATCGTTTTCAT+TGG | + | chr2_2:29837382-29837401 | None:intergenic | 30.0% |
| CAATGAAAACGATTCTATTG+AGG | - | chr2_2:29837380-29837399 | Msa0247490:intron | 30.0% | |
| CGAGGAAACAAAATAGTATA+CGG | - | chr2_2:29837569-29837588 | Msa0247490:intron | 30.0% | |
| GAGGAAACAAAATAGTATAC+GGG | - | chr2_2:29837570-29837589 | Msa0247490:intron | 30.0% | |
| CTACTAATTTGAGTGTGATT+TGG | - | chr2_2:29837795-29837814 | Msa0247490:intron | 30.0% | |
| ! | AAGATATCTGCAATTGATTC+TGG | + | chr2_2:29837856-29837875 | None:intergenic | 30.0% |
| AAATTGTAAGGTCTGCCAAA+TGG | + | chr2_2:29834742-29834761 | None:intergenic | 35.0% | |
| CATGATTTACTGACATCTTG+AGG | + | chr2_2:29834772-29834791 | None:intergenic | 35.0% | |
| ! | TGCTCTGAATCAATTTGTGA+TGG | - | chr2_2:29834941-29834960 | Msa0247490:intron | 35.0% |
| GATGAACGTTTCTTCAACTT+AGG | - | chr2_2:29835262-29835281 | Msa0247490:CDS | 35.0% | |
| !! | AGTGTTTATGCATTTTGGTC+AGG | - | chr2_2:29835334-29835353 | Msa0247490:intron | 35.0% |
| GTTTCTTCTGTGTACCATTT+CGG | + | chr2_2:29835378-29835397 | None:intergenic | 35.0% | |
| CCAGTCATTAAACTTACATC+AGG | + | chr2_2:29835437-29835456 | None:intergenic | 35.0% | |
| CCTGATGTAAGTTTAATGAC+TGG | - | chr2_2:29835434-29835453 | Msa0247490:intron | 35.0% | |
| !!! | CATTTTTTGGTGAAGAAGAC+TGG | + | chr2_2:29835481-29835500 | None:intergenic | 35.0% |
| TCACCAAAAAATGATAGGGA+TGG | - | chr2_2:29835488-29835507 | Msa0247490:CDS | 35.0% | |
| !!! | GTTCCATCCCTATCATTTTT+TGG | + | chr2_2:29835494-29835513 | None:intergenic | 35.0% |
| AATTAAATCCTTTCTGTCGC+AGG | - | chr2_2:29835760-29835779 | Msa0247490:intron | 35.0% | |
| CGGAAATCTAACATGATTAC+TGG | - | chr2_2:29835803-29835822 | Msa0247490:intron | 35.0% | |
| AGAATAACAGTCTTGCATCT+TGG | - | chr2_2:29835893-29835912 | Msa0247490:intron | 35.0% | |
| ATGATGTCCACATATGTGAT+AGG | - | chr2_2:29836158-29836177 | Msa0247490:intron | 35.0% | |
| TAGGCAGTGTAGTTAAATAG+TGG | - | chr2_2:29836177-29836196 | Msa0247490:intron | 35.0% | |
| CTCTTGACAACACTAGTTAT+AGG | - | chr2_2:29836334-29836353 | Msa0247490:intron | 35.0% | |
| ACATTCCTCACCTTATCATT+CGG | + | chr2_2:29836397-29836416 | None:intergenic | 35.0% | |
| GTGGTAACATTTCACATGAA+AGG | + | chr2_2:29836913-29836932 | None:intergenic | 35.0% | |
| AAAGAAAAAGACTGTCGAAC+AGG | - | chr2_2:29837048-29837067 | Msa0247490:intron | 35.0% | |
| AAAGAAACAATGGTTAAGCG+AGG | - | chr2_2:29837551-29837570 | Msa0247490:intron | 35.0% | |
| GTCATCTAACAAGATGAACT+TGG | + | chr2_2:29837682-29837701 | None:intergenic | 35.0% | |
| ! | CTAATTTGAGTGTGATTTGG+TGG | - | chr2_2:29837798-29837817 | Msa0247490:intron | 35.0% |
| ACAAGTTTCACGAGCTTGAT+GGG | - | chr2_2:29834700-29834719 | Msa0247490:CDS | 40.0% | |
| TGGCAGACCTTACAATTTCT+TGG | - | chr2_2:29834744-29834763 | Msa0247490:intron | 40.0% | |
| ! | TGAGGCACCAAGAAATTGTA+AGG | + | chr2_2:29834754-29834773 | None:intergenic | 40.0% |
| TGCATAGATGTATCCCAATG+TGG | + | chr2_2:29834905-29834924 | None:intergenic | 40.0% | |
| ACATTGGGATACATCTATGC+AGG | - | chr2_2:29834904-29834923 | Msa0247490:intron | 40.0% | |
| ACTGGCGAATCAAGAGAATA+TGG | - | chr2_2:29835452-29835471 | Msa0247490:intron | 40.0% | |
| GAACAATCTATACCTCACTG+AGG | + | chr2_2:29835516-29835535 | None:intergenic | 40.0% | |
| TCTAACATGATTACTGGGGA+TGG | - | chr2_2:29835809-29835828 | Msa0247490:intron | 40.0% | |
| TGTAGAAAATCCATCTGGAC+TGG | - | chr2_2:29835921-29835940 | Msa0247490:intron | 40.0% | |
| GAATTTAGGGATAGTCGTCA+AGG | - | chr2_2:29835948-29835967 | Msa0247490:intron | 40.0% | |
| TACACTGCCTATCACATATG+TGG | + | chr2_2:29836168-29836187 | None:intergenic | 40.0% | |
| TGATATGCTAGCAGCTATAG+CGG | - | chr2_2:29836251-29836270 | Msa0247490:intron | 40.0% | |
| AGCAGATTACACAAAACGAC+TGG | + | chr2_2:29836316-29836335 | None:intergenic | 40.0% | |
| TCTGTAGTCAATGTGAGACT+TGG | - | chr2_2:29836447-29836466 | Msa0247490:intron | 40.0% | |
| ACATGGTAGTCTGGACTTAT+TGG | + | chr2_2:29836479-29836498 | None:intergenic | 40.0% | |
| TGTACTAACACATGGTAGTC+TGG | + | chr2_2:29836488-29836507 | None:intergenic | 40.0% | |
| CAATGGAAGAAGATCTGAAG+AGG | - | chr2_2:29836753-29836772 | Msa0247490:CDS | 40.0% | |
| ! | CAAGATATGCTTAGCTTTCG+TGG | - | chr2_2:29836781-29836800 | Msa0247490:intron | 40.0% |
| GGTACATACGACAATGCATA+TGG | - | chr2_2:29837103-29837122 | Msa0247490:CDS | 40.0% | |
| !! | ATTTGAGTGTGATTTGGTGG+TGG | - | chr2_2:29837801-29837820 | Msa0247490:intron | 40.0% |
| GAAGAGCTAGTTAGGATGTA+TGG | - | chr2_2:29837829-29837848 | Msa0247490:CDS | 40.0% | |
| CACAAGTTTCACGAGCTTGA+TGG | - | chr2_2:29834699-29834718 | Msa0247490:CDS | 45.0% | |
| CAAGTTTCACGAGCTTGATG+GGG | - | chr2_2:29834701-29834720 | Msa0247490:CDS | 45.0% | |
| GTAAGGTCTGCCAAATGGAA+TGG | + | chr2_2:29834737-29834756 | None:intergenic | 45.0% | |
| TGTGGTAGCATAGGTGTGTT+TGG | + | chr2_2:29834887-29834906 | None:intergenic | 45.0% | |
| ACACACCTATGCTACCACAT+TGG | - | chr2_2:29834888-29834907 | Msa0247490:intron | 45.0% | |
| CACACCTATGCTACCACATT+GGG | - | chr2_2:29834889-29834908 | Msa0247490:intron | 45.0% | |
| GTATCCCAATGTGGTAGCAT+AGG | + | chr2_2:29834896-29834915 | None:intergenic | 45.0% | |
| !! | TGCACAGGCTTTTTCCGAAA+TGG | - | chr2_2:29835361-29835380 | Msa0247490:intron | 45.0% |
| GGAAGCAAGAGATTGACAGA+TGG | - | chr2_2:29835623-29835642 | Msa0247490:intron | 45.0% | |
| ATTCTCCCTTAAGCACGAAG+CGG | - | chr2_2:29835783-29835802 | Msa0247490:intron | 45.0% | |
| GATTTCCGCTTCGTGCTTAA+GGG | + | chr2_2:29835791-29835810 | None:intergenic | 45.0% | |
| AGATTTCCGCTTCGTGCTTA+AGG | + | chr2_2:29835792-29835811 | None:intergenic | 45.0% | |
| AAATTCTGTGCCAGTCCAGA+TGG | + | chr2_2:29835934-29835953 | None:intergenic | 45.0% | |
| !! | TCTGGACTGGCACAGAATTT+AGG | - | chr2_2:29835934-29835953 | Msa0247490:intron | 45.0% |
| !! | CTGGACTGGCACAGAATTTA+GGG | - | chr2_2:29835935-29835954 | Msa0247490:intron | 45.0% |
| GCTGTATCAATGATGCGTAG+CGG | - | chr2_2:29836275-29836294 | Msa0247490:intron | 45.0% | |
| !! | TCATTCGGTCTTCTGAGGTT+CGG | + | chr2_2:29836382-29836401 | None:intergenic | 45.0% |
| CCTTATCATTCGGTCTTCTG+AGG | + | chr2_2:29836387-29836406 | None:intergenic | 45.0% | |
| CCTCAGAAGACCGAATGATA+AGG | - | chr2_2:29836384-29836403 | Msa0247490:intron | 45.0% | |
| GAAGACCGAATGATAAGGTG+AGG | - | chr2_2:29836389-29836408 | Msa0247490:intron | 45.0% | |
| ! | GCTCAGTGAGCGTTTTTGTT+AGG | + | chr2_2:29837335-29837354 | None:intergenic | 45.0% |
| TGGAACAGGAAGAGCTAGTT+AGG | - | chr2_2:29837821-29837840 | Msa0247490:CDS | 45.0% | |
| !! | TTTTGGTCAGGTTGCTGCAC+AGG | - | chr2_2:29835346-29835365 | Msa0247490:intron | 50.0% |
| ATAGGGATGGAACCTCAGTG+AGG | - | chr2_2:29835501-29835520 | Msa0247490:CDS | 50.0% | |
| !! | GTGTGATTTGGTGGTGGAAC+AGG | - | chr2_2:29837807-29837826 | Msa0247490:CDS | 50.0% |
| TATGTGCGCAGTGCAGCAAG+TGG | - | chr2_2:29835602-29835621 | Msa0247490:intron | 55.0% | |
| GGGAGAATCCTGCGACAGAA+AGG | + | chr2_2:29835771-29835790 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 29834685 | 29837894 | 29834685 | ID=Msa0247490;Name=Msa0247490 |
| chr2_2 | mRNA | 29834685 | 29837894 | 29834685 | ID=Msa0247490-mRNA-1;Parent=Msa0247490;Name=Msa0247490-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0.87|0.88|9|0|273 |
| chr2_2 | exon | 29837802 | 29837894 | 29837802 | ID=Msa0247490-mRNA-1:exon:10559;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29837603 | 29837701 | 29837603 | ID=Msa0247490-mRNA-1:exon:10558;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29837057 | 29837223 | 29837057 | ID=Msa0247490-mRNA-1:exon:10557;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29836912 | 29836966 | 29836912 | ID=Msa0247490-mRNA-1:exon:10556;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29836749 | 29836797 | 29836749 | ID=Msa0247490-mRNA-1:exon:10555;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29836565 | 29836653 | 29836565 | ID=Msa0247490-mRNA-1:exon:10554;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29835476 | 29835553 | 29835476 | ID=Msa0247490-mRNA-1:exon:10553;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29835178 | 29835303 | 29835178 | ID=Msa0247490-mRNA-1:exon:10552;Parent=Msa0247490-mRNA-1 |
| chr2_2 | exon | 29834685 | 29834750 | 29834685 | ID=Msa0247490-mRNA-1:exon:10551;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29837802 | 29837894 | 29837802 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29837603 | 29837701 | 29837603 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29837057 | 29837223 | 29837057 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29836912 | 29836966 | 29836912 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29836749 | 29836797 | 29836749 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29836565 | 29836653 | 29836565 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29835476 | 29835553 | 29835476 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29835178 | 29835303 | 29835178 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| chr2_2 | CDS | 29834685 | 29834750 | 29834685 | ID=Msa0247490-mRNA-1:cds;Parent=Msa0247490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
