Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247500 | AES65708.2 | 80.364 | 275 | 30 | 4 | 1 | 255 | 1 | 271 | 1.77e-148 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247500 | sp|Q99091|CPRF3_PETCR | 45.000 | 80 | 44 | 0 | 170 | 249 | 196 | 275 | 2.05e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247500 | G7ISU2 | 80.364 | 275 | 30 | 4 | 1 | 255 | 1 | 271 | 8.48e-149 | 425 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0247500 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247500 | MtrunA17_Chr1g0162721 | 60.841 | 309 | 65 | 8 | 1 | 255 | 1 | 307 | 1.47e-113 | 328 |
| Msa0247500 | MtrunA17_Chr2g0302481 | 60.377 | 212 | 59 | 1 | 44 | 255 | 2 | 188 | 9.55e-83 | 246 |
| Msa0247500 | MtrunA17_Chr2g0302501 | 61.468 | 109 | 36 | 2 | 1 | 103 | 20 | 128 | 1.46e-35 | 123 |
| Msa0247500 | MtrunA17_Chr4g0065261 | 61.798 | 89 | 33 | 1 | 167 | 255 | 88 | 175 | 2.10e-27 | 103 |
| Msa0247500 | MtrunA17_Chr8g0373571 | 46.250 | 80 | 43 | 0 | 170 | 249 | 260 | 339 | 2.50e-17 | 80.1 |
| Msa0247500 | MtrunA17_Chr5g0410531 | 39.583 | 96 | 56 | 2 | 148 | 242 | 286 | 380 | 3.39e-13 | 68.6 |
| Msa0247500 | MtrunA17_Chr8g0369161 | 40.506 | 79 | 46 | 1 | 160 | 237 | 296 | 374 | 8.21e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247500 | AT4G36730.2 | 45.000 | 80 | 44 | 0 | 170 | 249 | 220 | 299 | 1.07e-16 | 78.6 |
| Msa0247500 | AT4G36730.1 | 45.000 | 80 | 44 | 0 | 170 | 249 | 222 | 301 | 1.21e-16 | 78.2 |
| Msa0247500 | AT2G35530.1 | 41.558 | 77 | 44 | 1 | 162 | 237 | 296 | 372 | 3.15e-13 | 68.9 |
Find 48 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGGGCTGGGTCAGAATT+TGG | 0.147766 | 2_2:-29849317 | Msa0247500:CDS |
| GCAAATAATTTGTTGAAATC+TGG | 0.194573 | 2_2:+29850106 | None:intergenic |
| TCTGGGCTGGGTCAGAATTT+GGG | 0.213477 | 2_2:-29849316 | Msa0247500:CDS |
| CATTGAAGTAGTGCAATATT+TGG | 0.230581 | 2_2:+29850475 | None:intergenic |
| CAGAGATCTAACATGATTAT+TGG | 0.278706 | 2_2:-29849455 | Msa0247500:CDS |
| AAACGCTCGCTGAGATTTCT+AGG | 0.285624 | 2_2:-29848582 | Msa0247500:CDS |
| CTCTGCTACATGAGGATTAT+AGG | 0.310651 | 2_2:+29850423 | None:intergenic |
| AAATAAGAAAAGAAAGAAAA+AGG | 0.331181 | 2_2:-29848805 | Msa0247500:CDS |
| TTCTTTGTAGAAAATCCATC+TGG | 0.342852 | 2_2:-29849334 | Msa0247500:intron |
| AATAGATCTGCAACCGATTC+TGG | 0.354294 | 2_2:+29848226 | None:intergenic |
| TCTCAGCGAGCGTTTGTGTT+AGG | 0.359836 | 2_2:+29848590 | None:intergenic |
| CTTCTGCATCAAAACATGAT+AGG | 0.360568 | 2_2:-29850021 | Msa0247500:CDS |
| CAAATAATTTGTTGAAATCT+GGG | 0.364865 | 2_2:+29850107 | None:intergenic |
| GAAGAGCTAGTTAAAGAGTA+TGG | 0.380462 | 2_2:-29848250 | Msa0247500:CDS |
| TCTTGATGCTCAACTAAAAC+TGG | 0.396539 | 2_2:-29849260 | Msa0247500:intron |
| GATCTCTGCTTCATACTTGA+AGG | 0.401624 | 2_2:+29849470 | None:intergenic |
| GAATTTGGGGACAGTTGTTA+AGG | 0.407905 | 2_2:-29849302 | Msa0247500:CDS |
| TGGCAGACCTTACAATTTCT+CGG | 0.413188 | 2_2:-29850615 | Msa0247500:CDS |
| GTTTATCTGCGCAGGGCGGC+TGG | 0.415010 | 2_2:-29849915 | Msa0247500:intron |
| CCAGTAATTAAACTTAAAAC+AGG | 0.417895 | 2_2:+29850070 | None:intergenic |
| AAGATCAAAGATAAGGAAAC+AGG | 0.427615 | 2_2:-29848759 | Msa0247500:intron |
| AAGAAAGAATCCAATCCATT+TGG | 0.432707 | 2_2:-29850635 | Msa0247500:CDS |
| TCTGCGTACCATTTCTGAAA+AGG | 0.446864 | 2_2:+29850135 | None:intergenic |
| TGTAGAAAATCCATCTGGGC+TGG | 0.452613 | 2_2:-29849329 | Msa0247500:intron |
| CTGGGCTGGGTCAGAATTTG+GGG | 0.465599 | 2_2:-29849315 | Msa0247500:CDS |
| GTAAGGTCTGCCAAATGGAT+TGG | 0.472361 | 2_2:+29850625 | None:intergenic |
| CAGCTAAAAGATCAAAGATA+AGG | 0.486050 | 2_2:-29848766 | Msa0247500:CDS |
| TAAAGAGTATGGACCAGAAT+CGG | 0.507916 | 2_2:-29848239 | Msa0247500:CDS |
| TGAGATTTCTAGGAAATGTC+TGG | 0.510510 | 2_2:-29848572 | Msa0247500:CDS |
| TTCTGCATCAAAACATGATA+GGG | 0.510843 | 2_2:-29850020 | Msa0247500:CDS |
| GTAGAAAATCCATCTGGGCT+GGG | 0.520703 | 2_2:-29849328 | Msa0247500:intron |
| AAATTGTAAGGTCTGCCAAA+TGG | 0.525325 | 2_2:+29850620 | None:intergenic |
| AAATTCTGACCCAGCCCAGA+TGG | 0.526322 | 2_2:+29849319 | None:intergenic |
| TATCTGCGCAGGGCGGCTGG+TGG | 0.532947 | 2_2:-29849912 | Msa0247500:intron |
| AGCGGCGCCGAGAAATTGTA+AGG | 0.545305 | 2_2:+29850608 | None:intergenic |
| AGGATTATAGGAGAGCTCCA+TGG | 0.551494 | 2_2:+29850435 | None:intergenic |
| TCTAACATGATTATTGGTGA+TGG | 0.571130 | 2_2:-29849449 | Msa0247500:intron |
| TCTTTGTAGAAAATCCATCT+GGG | 0.584157 | 2_2:-29849333 | Msa0247500:intron |
| GCATCAAAACATGATAGGGA+TGG | 0.584620 | 2_2:-29850016 | Msa0247500:CDS |
| TGATGAAAACAATTCTATTG+TGG | 0.586227 | 2_2:-29848542 | Msa0247500:intron |
| GGATTATAGGAGAGCTCCAT+GGG | 0.587361 | 2_2:+29850436 | None:intergenic |
| TGACCCACCTCTGCTACATG+AGG | 0.603415 | 2_2:+29850415 | None:intergenic |
| CTATAATCCTCATGTAGCAG+AGG | 0.606649 | 2_2:-29850422 | Msa0247500:intron |
| GAACAAACTGTACCTCATTG+AGG | 0.623003 | 2_2:+29849991 | None:intergenic |
| TGATGCTGTACATGATCCCA+TGG | 0.633950 | 2_2:-29850452 | Msa0247500:CDS |
| GGAAGTAAGAGATCAACAGA+TGG | 0.635178 | 2_2:-29849891 | Msa0247500:CDS |
| CATGATTTACTGACATCTAG+CGG | 0.690857 | 2_2:+29850590 | None:intergenic |
| ATAGGGATGGAACCTCAATG+AGG | 0.730132 | 2_2:-29850003 | Msa0247500:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTTAGTATATATTTAG+TGG | - | chr2_2:29848523-29848542 | Msa0247500:intron | 15.0% |
| !!! | ATAAAAATGTTTATGCATTT+TGG | - | chr2_2:29848673-29848692 | Msa0247500:intron | 15.0% |
| !!! | TTAAAATTTTTCTTTAGTAC+AGG | - | chr2_2:29849312-29849331 | Msa0247500:CDS | 15.0% |
| !! | AAATAAGAAAAGAAAGAAAA+AGG | - | chr2_2:29850043-29850062 | Msa0247500:CDS | 15.0% |
| !! | TTTCACTATTAATTAAGAAA+AGG | - | chr2_2:29850419-29850438 | Msa0247500:intron | 15.0% |
| !! | ATAAATACTATAAAAGAAGA+TGG | + | chr2_2:29850445-29850464 | None:intergenic | 15.0% |
| !! | TAAAGAAAACTAGTTAAGAT+AGG | + | chr2_2:29848289-29848308 | None:intergenic | 20.0% |
| !!! | GGATTTTCATATTTTTTTAG+AGG | - | chr2_2:29848544-29848563 | Msa0247500:CDS | 20.0% |
| !!! | TTTTCATATTTTTTTAGAGG+TGG | - | chr2_2:29848547-29848566 | Msa0247500:CDS | 20.0% |
| !!! | TTTCATATTTTTTTAGAGGT+GGG | - | chr2_2:29848548-29848567 | Msa0247500:CDS | 20.0% |
| !!! | CAAATAATTTGTTGAAATCT+GGG | + | chr2_2:29848744-29848763 | None:intergenic | 20.0% |
| !! | AAATTAACGTAATAAAAGAC+TGG | + | chr2_2:29849694-29849713 | None:intergenic | 20.0% |
| !! | AATTATATTCTACTACGATA+TGG | + | chr2_2:29849834-29849853 | None:intergenic | 20.0% |
| !! | ATAATTGAACAAAGAAGAAA+GGG | + | chr2_2:29850347-29850366 | None:intergenic | 20.0% |
| !! | TATAATTGAACAAAGAAGAA+AGG | + | chr2_2:29850348-29850367 | None:intergenic | 20.0% |
| ! | CAATGAATATATCTACTGAA+AGG | + | chr2_2:29848462-29848481 | None:intergenic | 25.0% |
| !!! | TTCATATTTTTTTAGAGGTG+GGG | - | chr2_2:29848549-29848568 | Msa0247500:CDS | 25.0% |
| !!! | GCAAATAATTTGTTGAAATC+TGG | + | chr2_2:29848745-29848764 | None:intergenic | 25.0% |
| ! | CCAGTAATTAAACTTAAAAC+AGG | + | chr2_2:29848781-29848800 | None:intergenic | 25.0% |
| !!! | CCTGTTTTAAGTTTAATTAC+TGG | - | chr2_2:29848778-29848797 | Msa0247500:CDS | 25.0% |
| ! | CAAAAGAAATGCAACTAAAT+AGG | + | chr2_2:29850009-29850028 | None:intergenic | 25.0% |
| ! | TGATGAAAACAATTCTATTG+TGG | - | chr2_2:29850306-29850325 | Msa0247500:intron | 25.0% |
| AAGAAAGAATCCAATCCATT+TGG | - | chr2_2:29848213-29848232 | Msa0247500:CDS | 30.0% | |
| CATTGAAGTAGTGCAATATT+TGG | + | chr2_2:29848376-29848395 | None:intergenic | 30.0% | |
| !! | AATGTTTATGCATTTTGGTC+AGG | - | chr2_2:29848678-29848697 | Msa0247500:intron | 30.0% |
| TTCTGCATCAAAACATGATA+GGG | - | chr2_2:29848828-29848847 | Msa0247500:intron | 30.0% | |
| ! | ACACATTCAATTAGAAGTGT+CGG | - | chr2_2:29849206-29849225 | Msa0247500:intron | 30.0% |
| CAGAGATCTAACATGATTAT+TGG | - | chr2_2:29849393-29849412 | Msa0247500:intron | 30.0% | |
| TCTAACATGATTATTGGTGA+TGG | - | chr2_2:29849399-29849418 | Msa0247500:intron | 30.0% | |
| !! | TATTGGTGATGGTAAGATTA+TGG | - | chr2_2:29849410-29849429 | Msa0247500:intron | 30.0% |
| ! | GGATTTTCTACAAAGAAACA+AGG | + | chr2_2:29849511-29849530 | None:intergenic | 30.0% |
| TTCTTTGTAGAAAATCCATC+TGG | - | chr2_2:29849514-29849533 | Msa0247500:intron | 30.0% | |
| TCTTTGTAGAAAATCCATCT+GGG | - | chr2_2:29849515-29849534 | Msa0247500:intron | 30.0% | |
| AGTTTAGCTAATTCACAGAA+AGG | + | chr2_2:29849661-29849680 | None:intergenic | 30.0% | |
| CTCTCATACAAACATGTTAT+AGG | - | chr2_2:29849779-29849798 | Msa0247500:intron | 30.0% | |
| !!! | TAGGAAGTGTTTTTAAGTAG+TGG | - | chr2_2:29849798-29849817 | Msa0247500:intron | 30.0% |
| AAGCTTAGCAACATTAAGAA+GGG | + | chr2_2:29849955-29849974 | None:intergenic | 30.0% | |
| TAAGCTTAGCAACATTAAGA+AGG | + | chr2_2:29849956-29849975 | None:intergenic | 30.0% | |
| ! | TTAGTTGCATTTCTTTTGAC+AGG | - | chr2_2:29850011-29850030 | Msa0247500:CDS | 30.0% |
| CAGCTAAAAGATCAAAGATA+AGG | - | chr2_2:29850082-29850101 | Msa0247500:CDS | 30.0% | |
| AAGATCAAAGATAAGGAAAC+AGG | - | chr2_2:29850089-29850108 | Msa0247500:CDS | 30.0% | |
| GTATTGAGATGTCTATGAAT+TGG | - | chr2_2:29850145-29850164 | Msa0247500:CDS | 30.0% | |
| ATCTAACAAAGAGAGATCAA+AGG | + | chr2_2:29850503-29850522 | None:intergenic | 30.0% | |
| AAATTGTAAGGTCTGCCAAA+TGG | + | chr2_2:29848231-29848250 | None:intergenic | 35.0% | |
| CATGATTTACTGACATCTAG+CGG | + | chr2_2:29848261-29848280 | None:intergenic | 35.0% | |
| !!! | TATTTTTTTAGAGGTGGGGT+TGG | - | chr2_2:29848553-29848572 | Msa0247500:CDS | 35.0% |
| !!! | ATTTTTTTAGAGGTGGGGTT+GGG | - | chr2_2:29848554-29848573 | Msa0247500:CDS | 35.0% |
| CTTCTGCATCAAAACATGAT+AGG | - | chr2_2:29848827-29848846 | Msa0247500:intron | 35.0% | |
| ! | ACAGTTTGTTCTTGTTCTTC+TGG | - | chr2_2:29848869-29848888 | Msa0247500:intron | 35.0% |
| ! | AAACGATTTTGTTCACGCTT+TGG | + | chr2_2:29848917-29848936 | None:intergenic | 35.0% |
| !! | TCAATTAGAAGTGTCGGTAT+CGG | - | chr2_2:29849212-29849231 | Msa0247500:intron | 35.0% |
| CTACAAAGGTTAGAACACTT+AGG | - | chr2_2:29849268-29849287 | Msa0247500:CDS | 35.0% | |
| TCTTGATGCTCAACTAAAAC+TGG | - | chr2_2:29849588-29849607 | Msa0247500:intron | 35.0% | |
| !!! | TATTGTTTTTGACACGCTAG+CGG | - | chr2_2:29849868-29849887 | Msa0247500:intron | 35.0% |
| AAAGAAAAAGGCTGTCAAAC+AGG | - | chr2_2:29850055-29850074 | Msa0247500:CDS | 35.0% | |
| TCTTCACATTCTTTCTGACA+AGG | + | chr2_2:29850196-29850215 | None:intergenic | 35.0% | |
| ! | TGAGATTTCTAGGAAATGTC+TGG | - | chr2_2:29850276-29850295 | Msa0247500:intron | 35.0% |
| ACTCAAATTAGGAGCAATCT+TGG | + | chr2_2:29850558-29850577 | None:intergenic | 35.0% | |
| CTCCTAATTTGAGTGTGATT+TGG | - | chr2_2:29850564-29850583 | Msa0247500:intron | 35.0% | |
| CACCAAATCACACTCAAATT+AGG | + | chr2_2:29850569-29850588 | None:intergenic | 35.0% | |
| ! | CTAATTTGAGTGTGATTTGG+TGG | - | chr2_2:29850567-29850586 | Msa0247500:intron | 35.0% |
| GAAGAGCTAGTTAAAGAGTA+TGG | - | chr2_2:29850598-29850617 | Msa0247500:intron | 35.0% | |
| ! | TAAAGAGTATGGACCAGAAT+CGG | - | chr2_2:29850609-29850628 | Msa0247500:CDS | 35.0% |
| TGGCAGACCTTACAATTTCT+CGG | - | chr2_2:29848233-29848252 | Msa0247500:CDS | 40.0% | |
| CTCTGCTACATGAGGATTAT+AGG | + | chr2_2:29848428-29848447 | None:intergenic | 40.0% | |
| CTATAATCCTCATGTAGCAG+AGG | - | chr2_2:29848426-29848445 | Msa0247500:intron | 40.0% | |
| !!! | TTTTTTTAGAGGTGGGGTTG+GGG | - | chr2_2:29848555-29848574 | Msa0247500:CDS | 40.0% |
| ! | TCTGCGTACCATTTCTGAAA+AGG | + | chr2_2:29848716-29848735 | None:intergenic | 40.0% |
| ! | TTTTGATGCAGAAGACTGGT+TGG | + | chr2_2:29848821-29848840 | None:intergenic | 40.0% |
| !!! | CATGTTTTGATGCAGAAGAC+TGG | + | chr2_2:29848825-29848844 | None:intergenic | 40.0% |
| GCATCAAAACATGATAGGGA+TGG | - | chr2_2:29848832-29848851 | Msa0247500:intron | 40.0% | |
| GAACAAACTGTACCTCATTG+AGG | + | chr2_2:29848860-29848879 | None:intergenic | 40.0% | |
| ACAAAATCGTTTATCTGCGC+AGG | - | chr2_2:29848925-29848944 | Msa0247500:intron | 40.0% | |
| CAAAATCGTTTATCTGCGCA+GGG | - | chr2_2:29848926-29848945 | Msa0247500:intron | 40.0% | |
| GGAAGTAAGAGATCAACAGA+TGG | - | chr2_2:29848957-29848976 | Msa0247500:intron | 40.0% | |
| !! | AAACTATGAAGCATCGACAC+TGG | - | chr2_2:29849068-29849087 | Msa0247500:intron | 40.0% |
| TACTACAGATGTTGACGTGT+CGG | + | chr2_2:29849102-29849121 | None:intergenic | 40.0% | |
| ! | ACACCTTCGTTTAGAAGTGT+CGG | - | chr2_2:29849243-29849262 | Msa0247500:intron | 40.0% |
| GTCTAATCACATCCTTTCCT+TGG | - | chr2_2:29849346-29849365 | Msa0247500:intron | 40.0% | |
| GATCTCTGCTTCATACTTGA+AGG | + | chr2_2:29849381-29849400 | None:intergenic | 40.0% | |
| GAATTTGGGGACAGTTGTTA+AGG | - | chr2_2:29849546-29849565 | Msa0247500:intron | 40.0% | |
| GAAAATCTGCTCACAACAAC+AGG | - | chr2_2:29849754-29849773 | Msa0247500:intron | 40.0% | |
| TACAGTAGCAATGATGCCTA+CGG | - | chr2_2:29849900-29849919 | Msa0247500:CDS | 40.0% | |
| CTGTTGAATTGCACCAATCA+TGG | + | chr2_2:29850126-29850145 | None:intergenic | 40.0% | |
| !! | ATTTGAGTGTGATTTGGTGG+TGG | - | chr2_2:29850570-29850589 | Msa0247500:intron | 40.0% |
| ! | AATAGATCTGCAACCGATTC+TGG | + | chr2_2:29850625-29850644 | None:intergenic | 40.0% |
| GTAAGGTCTGCCAAATGGAT+TGG | + | chr2_2:29848226-29848245 | None:intergenic | 45.0% | |
| TGATGCTGTACATGATCCCA+TGG | - | chr2_2:29848396-29848415 | Msa0247500:intron | 45.0% | |
| GGATTATAGGAGAGCTCCAT+GGG | + | chr2_2:29848415-29848434 | None:intergenic | 45.0% | |
| AGGATTATAGGAGAGCTCCA+TGG | + | chr2_2:29848416-29848435 | None:intergenic | 45.0% | |
| TAATCCTCATGTAGCAGAGG+TGG | - | chr2_2:29848429-29848448 | Msa0247500:intron | 45.0% | |
| AATCCTCATGTAGCAGAGGT+GGG | - | chr2_2:29848430-29848449 | Msa0247500:intron | 45.0% | |
| !!! | TTTTTTAGAGGTGGGGTTGG+GGG | - | chr2_2:29848556-29848575 | Msa0247500:CDS | 45.0% |
| !!! | TGCACTGGCCTTTTCAGAAA+TGG | - | chr2_2:29848705-29848724 | Msa0247500:intron | 45.0% |
| ATAGGGATGGAACCTCAATG+AGG | - | chr2_2:29848845-29848864 | Msa0247500:intron | 45.0% | |
| TCATGTGTTGCGTCAGTATC+AGG | - | chr2_2:29849145-29849164 | Msa0247500:intron | 45.0% | |
| !! | TAGAAGTGTCGGTGCTACAA+AGG | - | chr2_2:29849254-29849273 | Msa0247500:intron | 45.0% |
| AATCACATCCTTTCCTTGGC+AGG | - | chr2_2:29849350-29849369 | Msa0247500:intron | 45.0% | |
| CACAAGAACTGCAGTTCATG+TGG | - | chr2_2:29849471-29849490 | Msa0247500:CDS | 45.0% | |
| TGTAGAAAATCCATCTGGGC+TGG | - | chr2_2:29849519-29849538 | Msa0247500:intron | 45.0% | |
| GTAGAAAATCCATCTGGGCT+GGG | - | chr2_2:29849520-29849539 | Msa0247500:intron | 45.0% | |
| ACAGTAGCAATGATGCCTAC+GGG | - | chr2_2:29849901-29849920 | Msa0247500:CDS | 45.0% | |
| AATGATGCCTACGGGAAGAT+TGG | - | chr2_2:29849909-29849928 | Msa0247500:intron | 45.0% | |
| GGTACGTACTAGACCATGAT+TGG | - | chr2_2:29850110-29850129 | Msa0247500:CDS | 45.0% | |
| AAACGCTCGCTGAGATTTCT+AGG | - | chr2_2:29850266-29850285 | Msa0247500:intron | 45.0% | |
| ! | TTTTGGTCAGGATGCTGCAC+TGG | - | chr2_2:29848690-29848709 | Msa0247500:intron | 50.0% |
| AATCGTTTATCTGCGCAGGG+CGG | - | chr2_2:29848929-29848948 | Msa0247500:intron | 50.0% | |
| ! | GCACCGACACTTCTAAACGA+AGG | + | chr2_2:29849249-29849268 | None:intergenic | 50.0% |
| AGGATAGTCCTGCCAAGGAA+AGG | + | chr2_2:29849361-29849380 | None:intergenic | 50.0% | |
| CTTGAAGGATAGTCCTGCCA+AGG | + | chr2_2:29849366-29849385 | None:intergenic | 50.0% | |
| AAATTCTGACCCAGCCCAGA+TGG | + | chr2_2:29849532-29849551 | None:intergenic | 50.0% | |
| ! | ATCTGGGCTGGGTCAGAATT+TGG | - | chr2_2:29849531-29849550 | Msa0247500:intron | 50.0% |
| ! | TCTGGGCTGGGTCAGAATTT+GGG | - | chr2_2:29849532-29849551 | Msa0247500:intron | 50.0% |
| TGACACGCTAGCGGTTATAG+CGG | - | chr2_2:29849877-29849896 | Msa0247500:CDS | 50.0% | |
| TCCATCTCCAATCTTCCCGT+AGG | + | chr2_2:29849919-29849938 | None:intergenic | 50.0% | |
| TCTCAGCGAGCGTTTGTGTT+AGG | + | chr2_2:29850261-29850280 | None:intergenic | 50.0% | |
| !! | GTGTGATTTGGTGGTGGAAC+AGG | - | chr2_2:29850576-29850595 | Msa0247500:intron | 50.0% |
| ! | AGCGGCGCCGAGAAATTGTA+AGG | + | chr2_2:29848243-29848262 | None:intergenic | 55.0% |
| TGACCCACCTCTGCTACATG+AGG | + | chr2_2:29848436-29848455 | None:intergenic | 55.0% | |
| CAGTGACACACGACACGTGT+TGG | - | chr2_2:29849168-29849187 | Msa0247500:intron | 55.0% | |
| ! | CACACGACACGTGTTGGTGT+TGG | - | chr2_2:29849174-29849193 | Msa0247500:intron | 55.0% |
| ! | CTGGGCTGGGTCAGAATTTG+GGG | - | chr2_2:29849533-29849552 | Msa0247500:intron | 55.0% |
| GCCTACGGGAAGATTGGAGA+TGG | - | chr2_2:29849915-29849934 | Msa0247500:intron | 55.0% | |
| GTTTATCTGCGCAGGGCGGC+TGG | - | chr2_2:29848933-29848952 | Msa0247500:intron | 65.0% | |
| TATCTGCGCAGGGCGGCTGG+TGG | - | chr2_2:29848936-29848955 | Msa0247500:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 29848207 | 29850663 | 29848207 | ID=Msa0247500;Name=Msa0247500 |
| chr2_2 | mRNA | 29848207 | 29850663 | 29848207 | ID=Msa0247500-mRNA-1;Parent=Msa0247500;Name=Msa0247500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|9|0|255 |
| chr2_2 | exon | 29850604 | 29850663 | 29850604 | ID=Msa0247500-mRNA-1:exon:10550;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29850423 | 29850503 | 29850423 | ID=Msa0247500-mRNA-1:exon:10549;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29850004 | 29850170 | 29850004 | ID=Msa0247500-mRNA-1:exon:10548;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29849869 | 29849923 | 29849869 | ID=Msa0247500-mRNA-1:exon:10547;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29849450 | 29849498 | 29849450 | ID=Msa0247500-mRNA-1:exon:10546;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29849261 | 29849346 | 29849261 | ID=Msa0247500-mRNA-1:exon:10545;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29848760 | 29848837 | 29848760 | ID=Msa0247500-mRNA-1:exon:10544;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29848543 | 29848668 | 29848543 | ID=Msa0247500-mRNA-1:exon:10543;Parent=Msa0247500-mRNA-1 |
| chr2_2 | exon | 29848207 | 29848272 | 29848207 | ID=Msa0247500-mRNA-1:exon:10542;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29850604 | 29850663 | 29850604 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29850423 | 29850503 | 29850423 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29850004 | 29850170 | 29850004 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29849869 | 29849923 | 29849869 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29849450 | 29849498 | 29849450 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29849261 | 29849346 | 29849261 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29848760 | 29848837 | 29848760 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29848543 | 29848668 | 29848543 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| chr2_2 | CDS | 29848207 | 29848272 | 29848207 | ID=Msa0247500-mRNA-1:cds;Parent=Msa0247500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
