AlfalfaGEDB | Msa0247730

M. sativa cultivar zhongmu-4 / Msa0247730

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247730	XP_039682898.1	84.956	791	64	3	1	736	1	791	0.0	1354

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247730	sp\|Q9SZL8\|FRS5_ARATH	29.278	263	160	7	50	308	72	312	7.27e-23	107

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247730	A0A2Z6PJC0	70.563	693	115	10	81	722	1	655	0.0	938

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0247730	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247730	MtrunA17_Chr3g0088371	83.696	184	27	1	556	736	1	184	1.89e-104	317
Msa0247730	MtrunA17_Chr1g0172971	76.515	132	16	1	1	132	1	117	2.16e-57	204
Msa0247730	MtrunA17_Chr6g0475591	95.890	73	3	0	204	276	1	73	1.62e-42	148
Msa0247730	MtrunA17_Chr7g0258861	32.090	268	160	5	46	310	2	250	4.31e-37	141
Msa0247730	MtrunA17_Chr2g0324011	28.037	321	184	7	52	369	8	284	8.22e-31	128
Msa0247730	MtrunA17_Chr2g0324011	25.753	299	171	7	307	603	322	571	2.03e-25	111
Msa0247730	MtrunA17_Chr3g0082121	24.477	478	260	11	57	460	49	499	2.63e-29	124
Msa0247730	MtrunA17_Chr3g0082121	29.630	135	86	3	532	665	529	655	1.94e-12	70.9
Msa0247730	MtrunA17_Chr1g0202341	30.651	261	156	6	50	308	50	287	6.36e-27	117
Msa0247730	MtrunA17_Chr1g0202341	27.376	263	136	9	341	600	399	609	2.33e-19	92.8

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247730	AT4G38180.1	29.278	263	160	7	50	308	72	312	7.39e-24	107
Msa0247730	AT4G15090.1	25.714	385	219	12	334	711	395	719	3.91e-23	105
Msa0247730	AT4G15090.5	25.714	385	219	12	334	711	395	719	3.91e-23	105
Msa0247730	AT4G15090.3	25.714	385	219	12	334	711	395	719	3.91e-23	105
Msa0247730	AT4G15090.2	25.714	385	219	12	334	711	395	719	3.91e-23	105
Msa0247730	AT4G15090.4	25.714	385	219	12	334	711	395	719	3.91e-23	105
Msa0247730	AT5G28530.3	23.440	593	367	23	56	598	60	615	8.59e-19	91.7
Msa0247730	AT5G28530.2	23.440	593	367	23	56	598	60	615	8.59e-19	91.7
Msa0247730	AT2G27110.3	22.122	443	284	15	305	741	188	575	1.74e-14	77.8
Msa0247730	AT2G27110.2	22.122	443	284	15	305	741	333	720	1.87e-14	77.8

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 108 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAATGCAAAGCAAGAA+GGG	0.521363	2_2:+30280350	None:intergenic
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	2_2:-30282128	Msa0247730:CDS
AACAATAAATATCGGCCATT+AGG	0.388497	2_2:-30281528	Msa0247730:intron
AAGATCTTGGAGTTCTTAGG+TGG	0.553166	2_2:-30280022	Msa0247730:CDS
AATAAATGCAAAGCAAGAAG+GGG	0.641977	2_2:+30280351	None:intergenic
AATCGAACAAGTGAGTGGTC+TGG	0.543268	2_2:+30280508	None:intergenic
ACAAAACAAGAAATCTGATA+AGG	0.511435	2_2:-30282174	Msa0247730:CDS
ACATCAACTTCATCTGATAG+TGG	0.459514	2_2:-30282428	Msa0247730:CDS
ACATTATGGTTCAGAGAATG+AGG	0.494022	2_2:-30280471	Msa0247730:CDS
ACCGAACAAACAATAAATAT+CGG	0.389395	2_2:-30281536	Msa0247730:CDS

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCCATGATTCTTTATTGCTA+GGG	+	chr2_2:30279657-30279676	None:intergenic	30.0%
TTCCATGATTCTTTATTGCT+AGG	+	chr2_2:30279658-30279677	None:intergenic	30.0%
GGTAATTATGCATATAACAC+TGG	-	chr2_2:30279721-30279740	Msa0247730:CDS	30.0%
CGTTATGTTTGTAACAAAGA+AGG	-	chr2_2:30279817-30279836	Msa0247730:CDS	30.0%
TAACAAAGAAGGTTTCAAGA+AGG	-	chr2_2:30279828-30279847	Msa0247730:CDS	30.0%
AACAAAGAAGGTTTCAAGAA+GGG	-	chr2_2:30279829-30279848	Msa0247730:CDS	30.0%
GTTTACTTAATCCTAACAAC+AGG	-	chr2_2:30279854-30279873	Msa0247730:CDS	30.0%
TAAGATATATAGATGGGATG+TGG	-	chr2_2:30279993-30280012	Msa0247730:CDS	30.0%
TTACTTCTCGAAATGATCTA+AGG	+	chr2_2:30280059-30280078	None:intergenic	30.0%
AGAACGTCTTATGAAGTTAT+GGG	-	chr2_2:30280132-30280151	Msa0247730:CDS	30.0%

Showing 1 to 10 of 176 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	30279520	30282459	30279520	ID=Msa0247730;Name=Msa0247730
chr2_2	mRNA	30279520	30282459	30279520	ID=Msa0247730-mRNA-1;Parent=Msa0247730;Name=Msa0247730-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|2\|0\|742
chr2_2	exon	30281529	30282459	30281529	ID=Msa0247730-mRNA-1:exon:10671;Parent=Msa0247730-mRNA-1
chr2_2	exon	30279520	30280817	30279520	ID=Msa0247730-mRNA-1:exon:10670;Parent=Msa0247730-mRNA-1
chr2_2	CDS	30281529	30282459	30281529	ID=Msa0247730-mRNA-1:cds;Parent=Msa0247730-mRNA-1
chr2_2	CDS	30279520	30280817	30279520	ID=Msa0247730-mRNA-1:cds;Parent=Msa0247730-mRNA-1

Gene Sequence

>Msa0247730

ATGGATTTGACATCAACTTCATCTGATAGTGGACAACTGAGTGTTGAAACTTCATCACTGATTCATGCTGAGAGTGGACAATTGAGTGTTACTCCCCTAGCAATGATTCATGCTGACAGTTCTCAATGTTACTCCCCTAGCAATAAAGAATCATGGAAGTCTTTAGTCTTTCAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGAATAATTCACAAAACAAGAAATCTGATAAGGTACATTATTTGCGTTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTTTACTTAATCCTAACAACAGGCCAACAACAGACAGTCCACAGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATATATAGATGGGATGTGGATCACTGTCATCCATTACATAAACCAGAGCATTCGTGTTACCTTAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTTATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTATGGGTCAGGGAGTTGGAGGCACAGAGAATCTTCCTTTTCGGTTTTCAGACTTAAAGAACTATCTAATGACAATTCGTCAAAAAGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATGAAGCCCTCTCGAAACCATCTTTTTACTATGATATTCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGTCAGATGGAATTATGCAACTAGATTATTCTCTATTCGGCGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGAGAATGCAAAGAAAAATCTTGGCTCTCGTGCAAACAGTGCATTTTTTGATGAGTTAAATAATTTGGTTTCAAATGTAGATGATGAATCAGATTTTGACTATAATTGGGATCAGATGATGATAAATTGTTTTGATGGAAGGCCTACCTCAGACTTTAGGTGGCTTGTCCAAACTTACGCAAATCGTATGCATTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGCTGGTCTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTCTACAGCCAGACCACTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAACAAATAATTATCCCAACAGTCAGCTGATGCGGTCCGTTGTAAACAAGTACACCCCTTCTTGCTTTGCATTTATTTACAGGCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCTGCCTTTGAGAAGTTTTTCAAAGTTTTCACAATTGATAAGGTTGATGATAATTATGATGATGCTGATAATGACGGGCCTTCGAATGTTGATGTTTTGGATGCAGAACTTCAAGAAAACGTTTCCCCAAGTTTTGAAGATCATGATCGATTTGATGAAAGGCTTGTCACAGTTGACATTAGAAGCAAAAGTTTTAGTTGTTCATGTCGTATGTTTGAGAACAGGGGCTTCTTATGTCGACATGTTTTGAAGATCTTGGAGTTCTTAGGTGGACATGTGCAATATCATTCTTTGAAGACAATACCTGGACAATATGTTTTAAAGCGTTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGATGAAATCGACCGTCAATGTTGGCACTGAAGACACCAGTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTCAGCTTTCTACACGATTTTGTGCAGATCCAGAGTCATCTAAAATTTTTCTCGACGGTGTTCTTGAAGCTGGAAAAAAGGCAGAGGAGTTGCTTCTTTCTAAAGGTATTCGTACAGGCCCGACGCCATCTAAGTCTTCAAAAGTAGCTGCTGTTGGTGAAACATCTGCTGGGGTGAAGCCCACCGCACCAAAGTTCAAAGAAAGACCAAATCCAATTAAGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGAGAAAGGCAGAAATTCCTTATCAATCGGAAGAAACAAAAGAGAGATGATGAAGCTTTATCAGTGATTGTGGGTCCCTGA

Protein sequence

>Msa0247730

MDLTSTSSDSGQLSVETSSLIHAESGQLSVTPLAMIHADSSQCYSPSNKESWKSLVFQSIKEIEDFYGNYAYNTGFSIRTMLKSKNNSQNKKSDKVHYLRYVCNKEGFKKGSLLNPNNRPTTDSPQVIEFVKVKEKPEERVGCKAGIYLKLDEVLNVYKIYRWDVDHCHPLHKPEHSCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTIRQKEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWSDGIMQLDYSLFGDVISFDTTYRTNNKYRPLENAKKNLGSRANSAFFDELNNLVSNVDDESDFDYNWDQMMINCFDGRPTSDFRWLVQTYANRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTTNNYPNSQLMRSVVNKYTPSCFAFIYRQYDLSFKYYYEEDTTKGSAFEKFFKVFTIDKVDDNYDDADNDGPSNVDVLDAELQENVSPSFEDHDRFDERLVTVDIRSKSFSCSCRMFENRGFLCRHVLKILEFLGGHVQYHSLKTIPGQYVLKRWTRDVRPSVDKMKSTVNVGTEDTSQAQRYQQICAVTVQLSTRFCADPESSKIFLDGVLEAGKKAEELLLSKGIRTGPTPSKSSKVAAVGETSAGVKPTAPKFKERPNPIKSKKRLKSDYEKARERQKFLINRKKQKRDDEALSVIVGP*