Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247730 | XP_039682898.1 | 84.956 | 791 | 64 | 3 | 1 | 736 | 1 | 791 | 0.0 | 1354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247730 | sp|Q9SZL8|FRS5_ARATH | 29.278 | 263 | 160 | 7 | 50 | 308 | 72 | 312 | 7.27e-23 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247730 | A0A2Z6PJC0 | 70.563 | 693 | 115 | 10 | 81 | 722 | 1 | 655 | 0.0 | 938 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0247730 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247730 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 556 | 736 | 1 | 184 | 1.89e-104 | 317 |
| Msa0247730 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 2.16e-57 | 204 |
| Msa0247730 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 1.62e-42 | 148 |
| Msa0247730 | MtrunA17_Chr7g0258861 | 32.090 | 268 | 160 | 5 | 46 | 310 | 2 | 250 | 4.31e-37 | 141 |
| Msa0247730 | MtrunA17_Chr2g0324011 | 28.037 | 321 | 184 | 7 | 52 | 369 | 8 | 284 | 8.22e-31 | 128 |
| Msa0247730 | MtrunA17_Chr2g0324011 | 25.753 | 299 | 171 | 7 | 307 | 603 | 322 | 571 | 2.03e-25 | 111 |
| Msa0247730 | MtrunA17_Chr3g0082121 | 24.477 | 478 | 260 | 11 | 57 | 460 | 49 | 499 | 2.63e-29 | 124 |
| Msa0247730 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 532 | 665 | 529 | 655 | 1.94e-12 | 70.9 |
| Msa0247730 | MtrunA17_Chr1g0202341 | 30.651 | 261 | 156 | 6 | 50 | 308 | 50 | 287 | 6.36e-27 | 117 |
| Msa0247730 | MtrunA17_Chr1g0202341 | 27.376 | 263 | 136 | 9 | 341 | 600 | 399 | 609 | 2.33e-19 | 92.8 |
| Msa0247730 | MtrunA17_Chr5g0448761 | 28.102 | 274 | 175 | 8 | 40 | 308 | 47 | 303 | 1.50e-22 | 103 |
| Msa0247730 | MtrunA17_Chr5g0448761 | 21.910 | 356 | 224 | 9 | 325 | 679 | 399 | 701 | 2.65e-18 | 89.7 |
| Msa0247730 | MtrunA17_Chr1g0203721 | 25.641 | 312 | 194 | 8 | 13 | 310 | 18 | 305 | 1.71e-22 | 103 |
| Msa0247730 | MtrunA17_Chr1g0203721 | 23.393 | 389 | 237 | 11 | 300 | 681 | 371 | 705 | 2.83e-20 | 96.3 |
| Msa0247730 | MtrunA17_Chr8g0363841 | 26.488 | 336 | 192 | 12 | 56 | 386 | 22 | 307 | 3.04e-22 | 102 |
| Msa0247730 | MtrunA17_Chr8g0363841 | 26.531 | 294 | 168 | 7 | 311 | 603 | 334 | 580 | 4.15e-20 | 95.1 |
| Msa0247730 | MtrunA17_Chr2g0296781 | 25.455 | 330 | 184 | 9 | 55 | 377 | 1 | 275 | 3.83e-21 | 98.6 |
| Msa0247730 | MtrunA17_Chr1g0164591 | 31.707 | 164 | 103 | 2 | 147 | 310 | 1 | 155 | 4.10e-21 | 95.1 |
| Msa0247730 | MtrunA17_Chr1g0207551 | 23.582 | 335 | 196 | 9 | 325 | 656 | 364 | 641 | 1.30e-17 | 87.4 |
| Msa0247730 | MtrunA17_Chr1g0207551 | 23.129 | 294 | 190 | 9 | 22 | 310 | 9 | 271 | 6.56e-11 | 65.9 |
| Msa0247730 | MtrunA17_Chr3g0080351 | 25.938 | 320 | 175 | 9 | 341 | 656 | 414 | 675 | 2.07e-17 | 87.0 |
| Msa0247730 | MtrunA17_Chr3g0118611 | 23.876 | 356 | 215 | 10 | 305 | 657 | 255 | 557 | 2.81e-17 | 86.7 |
| Msa0247730 | MtrunA17_Chr5g0441581 | 25.940 | 266 | 161 | 8 | 39 | 304 | 25 | 254 | 5.87e-17 | 85.1 |
| Msa0247730 | MtrunA17_Chr2g0287651 | 25.510 | 294 | 194 | 6 | 21 | 310 | 45 | 317 | 8.21e-17 | 85.1 |
| Msa0247730 | MtrunA17_Chr2g0287651 | 22.363 | 237 | 140 | 3 | 364 | 600 | 440 | 632 | 1.65e-12 | 71.2 |
| Msa0247730 | MtrunA17_Chr6g0458391 | 27.059 | 255 | 147 | 6 | 57 | 310 | 231 | 447 | 3.09e-16 | 83.2 |
| Msa0247730 | MtrunA17_Chr1g0203051 | 23.887 | 247 | 165 | 4 | 66 | 310 | 94 | 319 | 4.97e-15 | 79.0 |
| Msa0247730 | MtrunA17_Chr1g0196541 | 25.194 | 258 | 165 | 6 | 55 | 310 | 1 | 232 | 6.75e-15 | 78.6 |
| Msa0247730 | MtrunA17_Chr6g0477261 | 27.624 | 181 | 103 | 3 | 196 | 374 | 7 | 161 | 8.17e-15 | 78.2 |
| Msa0247730 | MtrunA17_Chr2g0291591 | 25.796 | 314 | 173 | 13 | 14 | 310 | 29 | 299 | 4.94e-14 | 75.5 |
| Msa0247730 | MtrunA17_Chr1g0198761 | 25.448 | 279 | 182 | 7 | 56 | 326 | 52 | 312 | 1.80e-13 | 74.3 |
| Msa0247730 | MtrunA17_Chr2g0290391 | 26.336 | 262 | 161 | 8 | 55 | 303 | 55 | 297 | 4.06e-13 | 72.8 |
| Msa0247730 | MtrunA17_Chr5g0431001 | 25.448 | 279 | 182 | 9 | 56 | 326 | 66 | 326 | 1.80e-12 | 70.5 |
| Msa0247730 | MtrunA17_Chr2g0276841 | 23.904 | 251 | 167 | 7 | 65 | 310 | 84 | 315 | 1.83e-12 | 70.9 |
| Msa0247730 | MtrunA17_Chr2g0329031 | 24.101 | 278 | 170 | 8 | 39 | 310 | 2 | 244 | 3.59e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247730 | AT4G38180.1 | 29.278 | 263 | 160 | 7 | 50 | 308 | 72 | 312 | 7.39e-24 | 107 |
| Msa0247730 | AT4G15090.1 | 25.714 | 385 | 219 | 12 | 334 | 711 | 395 | 719 | 3.91e-23 | 105 |
| Msa0247730 | AT4G15090.5 | 25.714 | 385 | 219 | 12 | 334 | 711 | 395 | 719 | 3.91e-23 | 105 |
| Msa0247730 | AT4G15090.3 | 25.714 | 385 | 219 | 12 | 334 | 711 | 395 | 719 | 3.91e-23 | 105 |
| Msa0247730 | AT4G15090.2 | 25.714 | 385 | 219 | 12 | 334 | 711 | 395 | 719 | 3.91e-23 | 105 |
| Msa0247730 | AT4G15090.4 | 25.714 | 385 | 219 | 12 | 334 | 711 | 395 | 719 | 3.91e-23 | 105 |
| Msa0247730 | AT5G28530.3 | 23.440 | 593 | 367 | 23 | 56 | 598 | 60 | 615 | 8.59e-19 | 91.7 |
| Msa0247730 | AT5G28530.2 | 23.440 | 593 | 367 | 23 | 56 | 598 | 60 | 615 | 8.59e-19 | 91.7 |
| Msa0247730 | AT2G27110.3 | 22.122 | 443 | 284 | 15 | 305 | 741 | 188 | 575 | 1.74e-14 | 77.8 |
| Msa0247730 | AT2G27110.2 | 22.122 | 443 | 284 | 15 | 305 | 741 | 333 | 720 | 1.87e-14 | 77.8 |
| Msa0247730 | AT2G27110.1 | 22.122 | 443 | 284 | 15 | 305 | 741 | 333 | 720 | 1.87e-14 | 77.8 |
| Msa0247730 | AT5G28530.1 | 25.000 | 260 | 165 | 6 | 56 | 303 | 60 | 301 | 5.90e-14 | 76.3 |
| Msa0247730 | AT1G10240.2 | 22.925 | 253 | 167 | 8 | 65 | 310 | 62 | 293 | 3.00e-11 | 67.4 |
| Msa0247730 | AT1G10240.1 | 22.925 | 253 | 167 | 8 | 65 | 310 | 62 | 293 | 3.00e-11 | 67.4 |
| Msa0247730 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 531 | 627 | 440 | 526 | 3.07e-11 | 67.4 |
| Msa0247730 | AT4G19990.3 | 37.113 | 97 | 51 | 3 | 531 | 627 | 497 | 583 | 3.25e-11 | 67.4 |
| Msa0247730 | AT4G19990.4 | 37.113 | 97 | 51 | 3 | 531 | 627 | 497 | 583 | 3.25e-11 | 67.4 |
| Msa0247730 | AT4G19990.6 | 37.113 | 97 | 51 | 3 | 531 | 627 | 497 | 583 | 3.39e-11 | 67.4 |
| Msa0247730 | AT4G19990.2 | 37.113 | 97 | 51 | 3 | 531 | 627 | 497 | 583 | 3.39e-11 | 67.4 |
| Msa0247730 | AT4G19990.5 | 37.113 | 97 | 51 | 3 | 531 | 627 | 497 | 583 | 3.39e-11 | 67.4 |
| Msa0247730 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 531 | 627 | 511 | 597 | 3.40e-11 | 67.4 |
Find 108 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 2_2:-30280443 | Msa0247730:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 2_2:+30279623 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_2:-30280485 | Msa0247730:CDS |
| CTTGCTTTGCATTTATTTAC+AGG | 0.209869 | 2_2:-30280345 | Msa0247730:CDS |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 2_2:+30279629 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 2_2:+30282092 | None:intergenic |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 2_2:+30280145 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 2_2:+30281901 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 2_2:-30280194 | Msa0247730:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 2_2:-30281585 | Msa0247730:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 2_2:-30280025 | Msa0247730:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 2_2:+30280629 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_2:+30281535 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 2_2:-30279785 | Msa0247730:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 2_2:+30279561 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_2:-30281528 | Msa0247730:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_2:-30281536 | Msa0247730:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 2_2:-30281826 | Msa0247730:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_2:+30279647 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 2_2:-30280311 | Msa0247730:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 2_2:-30280660 | Msa0247730:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 2_2:-30280069 | Msa0247730:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 2_2:-30281820 | Msa0247730:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 2_2:-30281813 | Msa0247730:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 2_2:-30282140 | Msa0247730:CDS |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 2_2:-30279686 | Msa0247730:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 2_2:-30281888 | Msa0247730:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 2_2:+30279877 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 2_2:-30279752 | Msa0247730:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 2_2:+30282303 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 2_2:+30282302 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 2_2:+30279655 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_2:-30282023 | Msa0247730:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 2_2:-30280611 | Msa0247730:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 2_2:-30281971 | Msa0247730:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 2_2:-30282428 | Msa0247730:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 2_2:-30281858 | Msa0247730:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 2_2:+30280391 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 2_2:+30282080 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 2_2:-30281825 | Msa0247730:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 2_2:-30282103 | Msa0247730:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 2_2:+30279968 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 2_2:-30279571 | Msa0247730:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 2_2:-30280132 | Msa0247730:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 2_2:-30280612 | Msa0247730:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 2_2:+30281774 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 2_2:+30280309 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 2_2:-30279740 | Msa0247730:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 2_2:+30280146 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 2_2:-30279986 | Msa0247730:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 2_2:-30280295 | Msa0247730:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 2_2:+30279901 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 2_2:+30279717 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 2_2:-30279685 | Msa0247730:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_2:-30280471 | Msa0247730:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 2_2:-30282304 | Msa0247730:CDS |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 2_2:+30279656 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 2_2:+30282029 | None:intergenic |
| TAAATAAATGCAAAGCAAGA+AGG | 0.505745 | 2_2:+30280349 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 2_2:-30282006 | Msa0247730:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 2_2:-30280452 | Msa0247730:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 2_2:-30282174 | Msa0247730:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 2_2:+30281918 | None:intergenic |
| AAATAAATGCAAAGCAAGAA+GGG | 0.521363 | 2_2:+30280350 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 2_2:+30282343 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 2_2:-30282236 | Msa0247730:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 2_2:-30282129 | Msa0247730:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 2_2:-30281964 | Msa0247730:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 2_2:+30280314 | None:intergenic |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 2_2:+30281930 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 2_2:+30282304 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 2_2:+30282342 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 2_2:-30280294 | Msa0247730:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 2_2:+30280508 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_2:-30282128 | Msa0247730:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 2_2:-30281810 | Msa0247730:CDS |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 2_2:-30280022 | Msa0247730:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 2_2:-30280068 | Msa0247730:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 2_2:-30280657 | Msa0247730:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 2_2:-30279701 | Msa0247730:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 2_2:+30280390 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 2_2:-30279528 | Msa0247730:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 2_2:+30279716 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 2_2:+30280147 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 2_2:-30279911 | Msa0247730:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 2_2:-30280393 | Msa0247730:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 2_2:-30280624 | Msa0247730:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 2_2:-30280217 | Msa0247730:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 2_2:-30281970 | Msa0247730:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 2_2:-30282383 | Msa0247730:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 2_2:+30280193 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 2_2:-30280308 | Msa0247730:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 2_2:-30281819 | Msa0247730:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 2_2:-30282081 | Msa0247730:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 2_2:-30280216 | Msa0247730:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 2_2:+30282065 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 2_2:-30279684 | Msa0247730:CDS |
| AATAAATGCAAAGCAAGAAG+GGG | 0.641977 | 2_2:+30280351 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_2:-30280470 | Msa0247730:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 2_2:-30279527 | Msa0247730:CDS |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 2_2:+30279926 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 2_2:+30280651 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 2_2:-30280067 | Msa0247730:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 2_2:+30280503 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 2_2:+30279652 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 2_2:+30282344 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 2_2:+30280655 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 2_2:+30280369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | - | chr2_2:30281205-30281224 | Msa0247730:intron | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr2_2:30279700-30279719 | Msa0247730:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr2_2:30279986-30280005 | Msa0247730:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr2_2:30279987-30280006 | Msa0247730:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | + | chr2_2:30280300-30280319 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr2_2:30280490-30280509 | Msa0247730:CDS | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr2_2:30280720-30280739 | Msa0247730:CDS | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr2_2:30280783-30280802 | Msa0247730:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr2_2:30281246-30281265 | Msa0247730:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr2_2:30281247-30281266 | Msa0247730:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr2_2:30281275-30281294 | Msa0247730:intron | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr2_2:30279734-30279753 | Msa0247730:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr2_2:30279783-30279802 | Msa0247730:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr2_2:30280334-30280353 | Msa0247730:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr2_2:30280372-30280391 | Msa0247730:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr2_2:30280421-30280440 | Msa0247730:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr2_2:30280447-30280466 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | - | chr2_2:30280566-30280585 | Msa0247730:CDS | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | - | chr2_2:30280590-30280609 | Msa0247730:CDS | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | - | chr2_2:30280591-30280610 | Msa0247730:CDS | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr2_2:30280644-30280663 | Msa0247730:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr2_2:30280668-30280687 | Msa0247730:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | - | chr2_2:30280895-30280914 | Msa0247730:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr2_2:30280940-30280959 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr2_2:30281279-30281298 | Msa0247730:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr2_2:30281472-30281491 | Msa0247730:intron | 25.0% |
| ! | AAATAAATGCAAAGCAAGAA+GGG | + | chr2_2:30281610-30281629 | None:intergenic | 25.0% |
| ! | TAAATAAATGCAAAGCAAGA+AGG | + | chr2_2:30281611-30281630 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr2_2:30281646-30281665 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr2_2:30281646-30281665 | Msa0247730:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr2_2:30281693-30281712 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr2_2:30281706-30281725 | Msa0247730:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | + | chr2_2:30282154-30282173 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | - | chr2_2:30282157-30282176 | Msa0247730:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr2_2:30282331-30282350 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | - | chr2_2:30282365-30282384 | Msa0247730:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | + | chr2_2:30279657-30279676 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | + | chr2_2:30279658-30279677 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr2_2:30279721-30279740 | Msa0247730:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr2_2:30279817-30279836 | Msa0247730:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr2_2:30279828-30279847 | Msa0247730:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr2_2:30279829-30279848 | Msa0247730:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr2_2:30279854-30279873 | Msa0247730:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr2_2:30279993-30280012 | Msa0247730:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr2_2:30280059-30280078 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr2_2:30280099-30280118 | Msa0247730:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr2_2:30280132-30280151 | Msa0247730:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr2_2:30280186-30280205 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr2_2:30280425-30280444 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr2_2:30280429-30280448 | Msa0247730:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr2_2:30280453-30280472 | Msa0247730:CDS | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | - | chr2_2:30280567-30280586 | Msa0247730:CDS | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | + | chr2_2:30280598-30280617 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr2_2:30280632-30280651 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr2_2:30280924-30280943 | Msa0247730:intron | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | + | chr2_2:30281113-30281132 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | - | chr2_2:30281161-30281180 | Msa0247730:intron | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | + | chr2_2:30281609-30281628 | None:intergenic | 30.0% | |
| CTTGCTTTGCATTTATTTAC+AGG | - | chr2_2:30281612-30281631 | Msa0247730:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr2_2:30281651-30281670 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr2_2:30281649-30281668 | Msa0247730:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr2_2:30281740-30281759 | Msa0247730:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | + | chr2_2:30281813-30281832 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | + | chr2_2:30281814-30281833 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr2_2:30281825-30281844 | Msa0247730:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr2_2:30281993-30282012 | Msa0247730:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr2_2:30282313-30282332 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | + | chr2_2:30282399-30282418 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | - | chr2_2:30279529-30279548 | Msa0247730:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | + | chr2_2:30279656-30279675 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | + | chr2_2:30279895-30279914 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr2_2:30279912-30279931 | Msa0247730:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr2_2:30279917-30279936 | Msa0247730:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr2_2:30279918-30279937 | Msa0247730:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | - | chr2_2:30279951-30279970 | Msa0247730:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr2_2:30280030-30280049 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr2_2:30280069-30280088 | Msa0247730:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr2_2:30280131-30280150 | Msa0247730:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | - | chr2_2:30280138-30280157 | Msa0247730:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr2_2:30280218-30280237 | Msa0247730:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr2_2:30280221-30280240 | Msa0247730:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | + | chr2_2:30280289-30280308 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | + | chr2_2:30280290-30280309 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr2_2:30280342-30280361 | Msa0247730:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | + | chr2_2:30280551-30280570 | None:intergenic | 35.0% | |
| ! | ATTTTCTTGCTTCTGCCATT+TGG | - | chr2_2:30280614-30280633 | Msa0247730:CDS | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr2_2:30280754-30280773 | Msa0247730:CDS | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr2_2:30280957-30280976 | Msa0247730:intron | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr2_2:30281054-30281073 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr2_2:30281104-30281123 | Msa0247730:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr2_2:30281116-30281135 | Msa0247730:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr2_2:30281117-30281136 | Msa0247730:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr2_2:30281129-30281148 | Msa0247730:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr2_2:30281416-30281435 | Msa0247730:intron | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | + | chr2_2:30281457-30281476 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr2_2:30281486-30281505 | Msa0247730:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr2_2:30281487-30281506 | Msa0247730:intron | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr2_2:30281741-30281760 | Msa0247730:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | + | chr2_2:30281767-30281786 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | + | chr2_2:30281815-30281834 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr2_2:30281889-30281908 | Msa0247730:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr2_2:30281922-30281941 | Msa0247730:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | - | chr2_2:30281932-30281951 | Msa0247730:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | - | chr2_2:30281971-30281990 | Msa0247730:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr2_2:30281992-30282011 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | + | chr2_2:30282034-30282053 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | - | chr2_2:30282180-30282199 | Msa0247730:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | - | chr2_2:30282217-30282236 | Msa0247730:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr2_2:30282250-30282269 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | + | chr2_2:30282308-30282327 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr2_2:30282337-30282356 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | - | chr2_2:30282386-30282405 | Msa0247730:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | - | chr2_2:30282429-30282448 | Msa0247730:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | - | chr2_2:30282430-30282449 | Msa0247730:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | + | chr2_2:30279616-30279635 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | + | chr2_2:30279617-30279636 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | + | chr2_2:30279618-30279637 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | - | chr2_2:30279653-30279672 | Msa0247730:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | - | chr2_2:30280137-30280156 | Msa0247730:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | - | chr2_2:30280169-30280188 | Msa0247730:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | - | chr2_2:30280531-30280550 | Msa0247730:CDS | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | - | chr2_2:30280543-30280562 | Msa0247730:CDS | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | + | chr2_2:30280688-30280707 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | - | chr2_2:30281000-30281019 | Msa0247730:intron | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr2_2:30281065-30281084 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr2_2:30281064-30281083 | Msa0247730:intron | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | + | chr2_2:30281331-30281350 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | - | chr2_2:30281333-30281352 | Msa0247730:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr2_2:30281346-30281365 | Msa0247730:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr2_2:30281368-30281387 | Msa0247730:intron | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr2_2:30281514-30281533 | Msa0247730:intron | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | + | chr2_2:30281591-30281610 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr2_2:30281662-30281681 | Msa0247730:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr2_2:30281663-30281682 | Msa0247730:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | - | chr2_2:30281763-30281782 | Msa0247730:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr2_2:30281888-30281907 | Msa0247730:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr2_2:30281890-30281909 | Msa0247730:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | - | chr2_2:30281935-30281954 | Msa0247730:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | - | chr2_2:30282046-30282065 | Msa0247730:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | + | chr2_2:30282083-30282102 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | - | chr2_2:30282205-30282224 | Msa0247730:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | + | chr2_2:30282244-30282263 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | - | chr2_2:30282256-30282275 | Msa0247730:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | - | chr2_2:30279574-30279593 | Msa0247730:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr2_2:30279868-30279887 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr2_2:30279922-30279941 | Msa0247730:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr2_2:30279931-30279950 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr2_2:30279934-30279953 | Msa0247730:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | + | chr2_2:30280042-30280061 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr2_2:30280225-30280244 | Msa0247730:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr2_2:30281085-30281104 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr2_2:30281125-30281144 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr2_2:30281345-30281364 | Msa0247730:intron | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | + | chr2_2:30281452-30281471 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr2_2:30281505-30281524 | Msa0247730:intron | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | + | chr2_2:30282059-30282078 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | - | chr2_2:30282186-30282205 | Msa0247730:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | + | chr2_2:30282243-30282262 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | - | chr2_2:30282272-30282291 | Msa0247730:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | - | chr2_2:30282273-30282292 | Msa0247730:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | + | chr2_2:30282304-30282323 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | + | chr2_2:30282305-30282324 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr2_2:30279880-30279899 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | - | chr2_2:30280144-30280163 | Msa0247730:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr2_2:30281136-30281155 | Msa0247730:intron | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | - | chr2_2:30281297-30281316 | Msa0247730:intron | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr2_2:30281305-30281324 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | + | chr2_2:30281309-30281328 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | - | chr2_2:30281564-30281583 | Msa0247730:CDS | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | - | chr2_2:30282271-30282290 | Msa0247730:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | - | chr2_2:30279876-30279895 | Msa0247730:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | - | chr2_2:30280147-30280166 | Msa0247730:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | - | chr2_2:30281300-30281319 | Msa0247730:intron | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | + | chr2_2:30281569-30281588 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | - | chr2_2:30282172-30282191 | Msa0247730:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | + | chr2_2:30281570-30281589 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 30279520 | 30282459 | 30279520 | ID=Msa0247730;Name=Msa0247730 |
| chr2_2 | mRNA | 30279520 | 30282459 | 30279520 | ID=Msa0247730-mRNA-1;Parent=Msa0247730;Name=Msa0247730-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|742 |
| chr2_2 | exon | 30281529 | 30282459 | 30281529 | ID=Msa0247730-mRNA-1:exon:10671;Parent=Msa0247730-mRNA-1 |
| chr2_2 | exon | 30279520 | 30280817 | 30279520 | ID=Msa0247730-mRNA-1:exon:10670;Parent=Msa0247730-mRNA-1 |
| chr2_2 | CDS | 30281529 | 30282459 | 30281529 | ID=Msa0247730-mRNA-1:cds;Parent=Msa0247730-mRNA-1 |
| chr2_2 | CDS | 30279520 | 30280817 | 30279520 | ID=Msa0247730-mRNA-1:cds;Parent=Msa0247730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
