AlfalfaGEDB | Msa0247760

M. sativa cultivar zhongmu-4 / Msa0247760

KEGG: K11446
GO: GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247760	KEH37777.1	95.569	993	44	0	34	1026	8	1000	0.0	1883

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247760	sp\|F4I6G4\|JMJ18_ARATH	63.880	598	203	6	19	612	4	592	0.0	740
Msa0247760	sp\|F4I6G4\|JMJ18_ARATH	53.631	179	73	4	789	965	648	818	4.92e-50	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247760	G7I448	95.569	993	44	0	34	1026	8	1000	0.0	1883

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TFs/TRs:

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Gene ID	Type	Classification
Msa0247760	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247760	MtrunA17_Chr2g0303101	95.569	993	44	0	34	1026	11	1003	0.0	1882
Msa0247760	MtrunA17_Chr8g0380981	60.697	1033	337	15	57	1024	25	1053	0.0	1181
Msa0247760	MtrunA17_Chr1g0189211	58.520	581	227	6	50	621	125	700	0.0	692
Msa0247760	MtrunA17_Chr1g0189211	37.759	241	138	3	785	1024	998	1227	1.54e-38	156
Msa0247760	MtrunA17_Chr7g0261401	45.217	575	291	8	57	613	99	667	1.36e-157	487
Msa0247760	MtrunA17_Chr5g0397501	40.749	427	205	8	177	591	288	678	1.64e-86	305
Msa0247760	MtrunA17_Chr5g0397501	55.405	74	29	2	70	143	23	92	4.10e-14	77.4
Msa0247760	MtrunA17_Chr5g0410721	34.975	406	179	10	72	463	86	420	1.45e-58	217
Msa0247760	MtrunA17_Chr3g0116441	33.827	405	195	10	75	468	18	360	5.68e-55	209
Msa0247760	MtrunA17_Chr1g0164731	29.022	603	323	17	71	654	41	557	5.48e-54	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247760	AT1G30810.3	63.880	598	203	6	19	612	4	592	0.0	740
Msa0247760	AT1G30810.3	53.631	179	73	4	789	965	648	818	5.00e-51	194
Msa0247760	AT1G30810.2	63.880	598	203	6	19	612	4	592	0.0	740
Msa0247760	AT1G30810.2	53.631	179	73	4	789	965	648	818	5.00e-51	194
Msa0247760	AT1G30810.1	63.880	598	203	6	19	612	4	592	0.0	740
Msa0247760	AT1G30810.1	53.631	179	73	4	789	965	648	818	5.00e-51	194
Msa0247760	AT4G20400.1	61.121	571	203	5	44	608	31	588	0.0	714
Msa0247760	AT4G20400.1	40.000	230	109	4	802	1023	743	951	2.19e-43	171
Msa0247760	AT2G34880.1	58.059	577	217	8	39	608	25	583	0.0	691
Msa0247760	AT2G34880.1	47.179	195	95	3	774	966	618	806	3.41e-46	179

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Find 225 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAAGGGAGCCCTCCG+AGG	0.649446	2_2:-30396974	Msa0247760:CDS
AAACCTCAGCAGATAAGTGT+TGG	0.523110	2_2:-30394095	Msa0247760:CDS
AAACTGGTTGTGCGGGAACC+AGG	0.420135	2_2:-30395138	Msa0247760:CDS
AAAGCAGAAGCATGGCTTCC+AGG	0.340144	2_2:+30396237	None:intergenic
AAAGGTTTCCCTACATCTCC+AGG	0.510314	2_2:-30393629	Msa0247760:CDS
AAAGTCTTTAAACGTGAAGT+CGG	0.621637	2_2:+30397083	None:intergenic
AAATGCAGGGAAACTACACA+CGG	0.725422	2_2:-30393021	Msa0247760:three_prime_UTR
AAATTGAAGGTGAATACTGG+CGG	0.682225	2_2:-30396948	Msa0247760:CDS
AAATTGCTTGAAGCACTAGA+AGG	0.484561	2_2:-30395274	Msa0247760:CDS
AACAGGTGCTTCATCAATTA+TGG	0.174076	2_2:+30397551	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTATAGAATAAATAAAGCC+TGG	-	chr2_2:30393378-30393397	Msa0247760:CDS	30.0%
TTGTTATAAATTACTCCCTC+CGG	-	chr2_2:30393436-30393455	Msa0247760:CDS	30.0%
TTTCTTATAAATAGGACTGG+AGG	-	chr2_2:30393569-30393588	Msa0247760:CDS	30.0%
ATTAGAAATTGGAATTGACC+AGG	+	chr2_2:30394176-30394195	None:intergenic	30.0%
TGGAATCTAATGCTCTTATA+TGG	+	chr2_2:30394240-30394259	None:intergenic	30.0%
GTTTGAAAATCTAACCTCTT+TGG	+	chr2_2:30394744-30394763	None:intergenic	30.0%
AGAGAAATCATGCATTGTTA+GGG	+	chr2_2:30394766-30394785	None:intergenic	30.0%
AAGAGAAATCATGCATTGTT+AGG	+	chr2_2:30394767-30394786	None:intergenic	30.0%
TAACATTGTATCTCTGTTTC+TGG	-	chr2_2:30394925-30394944	Msa0247760:CDS	30.0%
GTAACCTACATATGTGATAT+TGG	-	chr2_2:30395103-30395122	Msa0247760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	30393004	30400202	30393004	ID=Msa0247760;Name=Msa0247760
chr2_2	mRNA	30393004	30400202	30393004	ID=Msa0247760-mRNA-1;Parent=Msa0247760;Name=Msa0247760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.9\|0.90\|0.90\|1\|1\|11\|369\|1026
chr2_2	exon	30393004	30393702	30393004	ID=Msa0247760-mRNA-1:exon:10705;Parent=Msa0247760-mRNA-1
chr2_2	exon	30393957	30394154	30393957	ID=Msa0247760-mRNA-1:exon:10704;Parent=Msa0247760-mRNA-1
chr2_2	exon	30394413	30394516	30394413	ID=Msa0247760-mRNA-1:exon:10703;Parent=Msa0247760-mRNA-1
chr2_2	exon	30394615	30395548	30394615	ID=Msa0247760-mRNA-1:exon:10702;Parent=Msa0247760-mRNA-1
chr2_2	exon	30395675	30396043	30395675	ID=Msa0247760-mRNA-1:exon:10701;Parent=Msa0247760-mRNA-1
chr2_2	exon	30396170	30396331	30396170	ID=Msa0247760-mRNA-1:exon:10700;Parent=Msa0247760-mRNA-1
chr2_2	exon	30396601	30396822	30396601	ID=Msa0247760-mRNA-1:exon:10699;Parent=Msa0247760-mRNA-1
chr2_2	exon	30396918	30397430	30396918	ID=Msa0247760-mRNA-1:exon:10698;Parent=Msa0247760-mRNA-1
chr2_2	exon	30397533	30397610	30397533	ID=Msa0247760-mRNA-1:exon:10697;Parent=Msa0247760-mRNA-1
chr2_2	exon	30397843	30397914	30397843	ID=Msa0247760-mRNA-1:exon:10696;Parent=Msa0247760-mRNA-1
chr2_2	exon	30400104	30400202	30400104	ID=Msa0247760-mRNA-1:exon:10695;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30400104	30400202	30400104	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30397843	30397914	30397843	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30397533	30397610	30397533	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30396918	30397430	30396918	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30396601	30396822	30396601	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30396170	30396331	30396170	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30395675	30396043	30395675	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30394615	30395548	30394615	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30394413	30394516	30394413	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30393957	30394154	30393957	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	CDS	30393373	30393702	30393373	ID=Msa0247760-mRNA-1:cds;Parent=Msa0247760-mRNA-1
chr2_2	three_prime_UTR	30393004	30393372	30393004	ID=Msa0247760-mRNA-1:three_prime_utr;Parent=Msa0247760-mRNA-1

Gene Sequence

>Msa0247760

ATGGCGAATGGATCGACCGCCAGCACGGTAGCAAAATCCAAGTGCCAACAGCTCCCTGAAAAAACAGCAAGCATAAAAGCTCTTTCGAGCAAACAACGCGATAGTCCTCTTCGGCACAAACCTAAAAAGGACAATGCACCTGAGTCTCCTGAAAGTCTTAGAAGTAAAAAGATATCAGCTAGATGGGATCCATCTGAAGCATGTCGGCCCATAATTGATGAAGCACCTGTTTTTCATCCAACTATTGAAGAGTTTGAAGATACATTGAGTTACATAGCGAAGATACGCCCCCTAGCTGAACCTTACGGCATATGTAGGATCGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGACAAAGATATCTGGGAAAATGCTGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAGGAACTCCAAATCAGGAACATGTAGGAGAAATTCCAAGTCAGCTTCTGAAGCTAATAACGCTTCTGAAGCTGATGAGAAATACGGATTTCAAGCAGGGTCCGACTTCACGTTTAAAGACTTTCAGCAATATGCTAGCCACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCAAATGAAGATGGAAAAGTCAATGATAGTAACCTCCAAAACCGAAGGGAGCCCTCCGAGGAGGAAATTGAAGGTGAATACTGGCGGATAGTTGAGCAGCCAACGGATGAAGTTGAGGTGTACTATGGAGCGGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTTCTAAGGCATCATCCATACCTAAGGGTTATCCGGATCAGTATGCACTTTCTGGTTGGAATCTAAATAACTTCCCGCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCGTTTTGTTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACTCAAAGATATGGTATGGAGTACCTGGAAGCCATGCTTCTGCTTTAGAAGGTGCAATGAAGAAGCACTTGCCTGATTTGTTCGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCATCAATTCTTAAAGATGAGGGAGTGCCCGTATATCGCACTGTTCAGCACTCTGGGGAATTTGTCATTACTTTTCCGAGGGGGTACCACTCTGGGTTCAATTGTGGGTTCAACTGTGCAGAAGCAGTGAATGTTGCTCCTGTCGATTGGTTAACGCATGGCCTAAATGCCGTTGAGCTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCATCGCTGGAAGCTATACGAGCCCTTGCAGAGCTAACTCTTCATGGAAAGGAAAGTTCAAAAAATTTGAAATGGAGAAGCTACTGTGGGAAAGATGGAGTTCTTACCAAGGCATTTAAGGCAAGGATAAAGATGGAAGAAGAGAGGCTAAACTGTCTTCCAACTCATTTTAAGTCGCTGAAGATGGGCAACGACTTTGACTTGCATACAGAACGAGAATGCTTTTCTTGCTTCTATGACTTGTATCTATCTGCTGTCGGTTGCGAGTGCTCTCCTGATAAATATTCTTGTCTTAAGCATGCTTGTTTGTTCTGCTCATGCGAAATGGACAAAAGATTTGTTCTGCTTCGATATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCACTTGCTCTTGAGTTATGGGAAAGTAAAAACTTCGGAATGGTTTCTGCCGAGGCCAGTGAGGTTTGCATGAATAAACAAGAGGTGGATGGAGACAAGGGTCATGAAGAAACTGGTTGTGCGGGAACCAGGGATAAGTCAAATAGTCATGCTACATCAGAGCTAATGCAGTGTGAATCTCACCTTGTAACCCTTAGCGCGCCGAATGAAAGTATAGATAGTGATAATGACAATATGATAGTCATAGACAAAGATAAGGCGGATATTGCAGATAGCCATAACAAGGGTGATTCAGTAGAGGAAAAAGCATGTTGTTCAGAGACAAAAAAGGAACAAGACAACATGGAACTTGTTGTTGACCTATCACCTTCATCTTCTGTTGTGAAGACAGAAGTTTCATCATGCTCTAGGAATGTTCACAATTCTTGTACATTTGATGGTGGAAAACTTGAGGTGCATCTGCAAATGGATTCAGATTCAAGAAAGAAACCCAAAATTGTAGTTGAAAAAGTCACTGACACCACGAATGCGAGTATATCTTTGACACAAGAAAGCTTTCTAATGCAAATTTTTAGTACTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTCATGGGAAGCTATGGTGCAATAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGAGTTAATTTCTTTAGCATCATCGATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTAATTGATGCTGGACTTCTAGGACCTCTTTTCAAGGTTACAATGGAGGAATGTCCAAGTGTCACTTTCACGGAAACCTCAGCAGATAAGTGTTGGGAATCAGTTCTTAAGAGACTACGTGACAAAATCACAGAGCAAAGGAGTCTAGGTGAACATGAACTTCCTTCCTTAGAGCTTCTGAAAAGCATTAACGGTTTTAGAATGTTCGGCTTCCCTTTACCGTCCATTGTTCAGGCCATCGAAGCTCAAGATCCCAGTCATCAGTGTGCAGAGTATTGGAATCACAAAGGTTTCCCTACATCTCCAGGAAGTGTCATCGATAACTGTAAAGTCCTATGTTGTTCAAGTAGCCCTACCAAAGTTTTTGGTATTAATTTGACTGATCAGGCGAAAGACAACATAGAAGGAAGTTTTTATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCCCGAAGAGCTAAGCTCATTGCGCAAGTTTCTCATGTCTGACGCACAATGTTCTGAGTGGAGAATGACATTAACATCATTGATCGTTGAGATTCAGAAAGCTTTGTAG

Protein sequence

>Msa0247760

MANGSTASTVAKSKCQQLPEKTASIKALSSKQRDSPLRHKPKKDNAPESPESLRSKKISARWDPSEACRPIIDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKDKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRRNSKSGTCRRNSKSASEANNASEADEKYGFQAGSDFTFKDFQQYASHFKECYFGLKDANEDGKVNDSNLQNRREPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFSKASSIPKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDSKIWYGVPGSHASALEGAMKKHLPDLFEEVPNLLNDLVTQLSPSILKDEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLTHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKESSKNLKWRSYCGKDGVLTKAFKARIKMEEERLNCLPTHFKSLKMGNDFDLHTERECFSCFYDLYLSAVGCECSPDKYSCLKHACLFCSCEMDKRFVLLRYNMNELNKLLEALEGDSLALELWESKNFGMVSAEASEVCMNKQEVDGDKGHEETGCAGTRDKSNSHATSELMQCESHLVTLSAPNESIDSDNDNMIVIDKDKADIADSHNKGDSVEEKACCSETKKEQDNMELVVDLSPSSSVVKTEVSSCSRNVHNSCTFDGGKLEVHLQMDSDSRKKPKIVVEKVTDTTNASISLTQESFLMQIFSTSVKPISLGSVVHGKLWCNKHAIYPKGFKSRVNFFSIIDPTRICSYVSEVIDAGLLGPLFKVTMEECPSVTFTETSADKCWESVLKRLRDKITEQRSLGEHELPSLELLKSINGFRMFGFPLPSIVQAIEAQDPSHQCAEYWNHKGFPTSPGSVIDNCKVLCCSSSPTKVFGINLTDQAKDNIEGSFYSLEEMKSILQKASPEELSSLRKFLMSDAQCSEWRMTLTSLIVEIQKAL*