AlfalfaGEDB | Msa0247790

M. sativa cultivar zhongmu-4 / Msa0247790

KEGG: -
GO: GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007
PFAM: PF06943.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247790	XP_013463754.1	83.010	206	2	1	1	206	1	173	1.99e-112	328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247790	sp\|Q2QMB3\|LOL2_ORYSJ	59.880	167	57	4	44	206	11	171	2.52e-58	184

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247790	A0A072V6U7	83.010	206	2	1	1	206	1	173	9.50e-113	328

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TFs/TRs:

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Gene ID	Type	Classification
Msa0247790	TF	C2C2-LSD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247790	MtrunA17_Chr2g0303181	83.010	206	2	1	1	206	1	173	1.83e-116	328
Msa0247790	MtrunA17_Chr8g0381011	73.373	169	36	2	44	206	11	176	6.75e-82	241
Msa0247790	MtrunA17_Chr4g0054701	60.952	105	38	1	44	148	40	141	6.94e-42	139
Msa0247790	MtrunA17_Chr4g0047341	44.737	76	42	0	77	152	40	115	1.37e-21	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247790	AT4G20380.2	62.857	175	52	4	44	206	16	189	3.69e-59	184
Msa0247790	AT4G20380.7	62.857	175	52	4	44	206	16	189	3.69e-59	184
Msa0247790	AT4G20380.6	62.857	175	52	4	44	206	11	184	4.98e-59	184
Msa0247790	AT4G20380.3	62.857	175	52	4	44	206	11	184	4.98e-59	184
Msa0247790	AT4G20380.4	62.857	175	52	4	44	206	11	184	4.98e-59	184
Msa0247790	AT4G20380.1	62.857	175	52	4	44	206	11	184	4.98e-59	184
Msa0247790	AT4G20380.5	62.857	175	52	4	44	206	11	184	4.98e-59	184
Msa0247790	AT4G20380.8	54.726	201	52	4	44	206	11	210	1.82e-55	175
Msa0247790	AT1G32540.1	50.746	134	63	2	14	147	44	174	5.51e-42	140
Msa0247790	AT1G32540.3	60.000	105	39	1	44	148	41	142	1.28e-40	135

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Find 72 sgRNAs with CRISPR-Local

Find 727 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGCTTGCTCCTCT+AGG	0.458230	2_2:-30508194	None:intergenic
AAAAGTTAAACACCACCCTT+AGG	0.526780	2_2:-30508118	None:intergenic
AAACAACAGCAGCTCCGAAA+CGG	0.541621	2_2:+30509655	Msa0247790:CDS
AAACATTGCTTGCTCCTCTA+GGG	0.521654	2_2:-30508193	None:intergenic
AAATCAATCTAAACCTTGAA+TGG	0.436981	2_2:-30518674	None:intergenic
AAATGAACCATATCCGTTGT+GGG	0.521367	2_2:+30516889	Msa0247790:CDS
AACACTATAAATCTTGTACC+AGG	0.651954	2_2:+30514582	Msa0247790:CDS
AACATACCAGGAGGAAGAAC+AGG	0.449700	2_2:-30513389	None:intergenic
AACATCTTGCTTTACCCTAG+AGG	0.603716	2_2:+30508179	Msa0247790:CDS
AACATCTTGCTTTATCCTCG+AGG	0.624343	2_2:+30513317	Msa0247790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAGGAAACATATATACC+GGG	-	chr2_2:30508257-30508276	None:intergenic	30.0%
GCAAAAGGAAACATATATAC+CGG	-	chr2_2:30508258-30508277	None:intergenic	30.0%
ATGATAACAAAAACCGCAAA+AGG	-	chr2_2:30508273-30508292	None:intergenic	30.0%
AGTAAATTTGATTGCACACA+TGG	+	chr2_2:30508645-30508664	Msa0247790:intron	30.0%
GTAACTTACAACTTAATCCA+TGG	-	chr2_2:30508671-30508690	None:intergenic	30.0%
ATTAGATCACAAAATGCATC+AGG	+	chr2_2:30508887-30508906	Msa0247790:intron	30.0%
TTAGATCACAAAATGCATCA+GGG	+	chr2_2:30508888-30508907	Msa0247790:intron	30.0%
ATATATATCATACCTGGTAC+AGG	-	chr2_2:30509043-30509062	None:intergenic	30.0%
GTGTGTATATATATCATACC+TGG	-	chr2_2:30509049-30509068	None:intergenic	30.0%
AAATGAGCCATATACATTGT+GGG	+	chr2_2:30509173-30509192	Msa0247790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	30508117	30519008	30508117	ID=Msa0247790;Name=Msa0247790
chr2_2	mRNA	30508117	30519008	30508117	ID=Msa0247790-mRNA-1;Parent=Msa0247790;Name=Msa0247790-mRNA-1;_AED=0.27;_eAED=0.30;_QI=29\|0.71\|0.62\|1\|0.85\|0.87\|8\|412\|206
chr2_2	exon	30508117	30508211	30508117	ID=Msa0247790-mRNA-1:exon:10706;Parent=Msa0247790-mRNA-1
chr2_2	exon	30509612	30509676	30509612	ID=Msa0247790-mRNA-1:exon:10707;Parent=Msa0247790-mRNA-1
chr2_2	exon	30513316	30513404	30513316	ID=Msa0247790-mRNA-1:exon:10708;Parent=Msa0247790-mRNA-1
chr2_2	exon	30514493	30514603	30514493	ID=Msa0247790-mRNA-1:exon:10709;Parent=Msa0247790-mRNA-1
chr2_2	exon	30516880	30516992	30516880	ID=Msa0247790-mRNA-1:exon:10710;Parent=Msa0247790-mRNA-1
chr2_2	exon	30517802	30517864	30517802	ID=Msa0247790-mRNA-1:exon:10711;Parent=Msa0247790-mRNA-1
chr2_2	exon	30517990	30518061	30517990	ID=Msa0247790-mRNA-1:exon:10712;Parent=Msa0247790-mRNA-1
chr2_2	exon	30518555	30519008	30518555	ID=Msa0247790-mRNA-1:exon:10713;Parent=Msa0247790-mRNA-1
chr2_2	five_prime_UTR	30508117	30508145	30508117	ID=Msa0247790-mRNA-1:five_prime_utr;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30508146	30508211	30508146	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30509612	30509676	30509612	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30513316	30513404	30513316	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30514493	30514603	30514493	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30516880	30516992	30516880	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30517802	30517864	30517802	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30517990	30518061	30517990	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	CDS	30518555	30518596	30518555	ID=Msa0247790-mRNA-1:cds;Parent=Msa0247790-mRNA-1
chr2_2	three_prime_UTR	30518597	30519008	30518597	ID=Msa0247790-mRNA-1:three_prime_utr;Parent=Msa0247790-mRNA-1

Gene Sequence

>Msa0247790

ATGCGGAACCACATTATGTGTACGGGGTGTAGGAACATCTTGCTTTACCCTAGAGGAGCAAGCAATATGACTAATGTAAGGCCACCAGTTCCTGCACAAAGACCTAATGAAACAACAGCAGCTCCGAAACGGAACATCTTGCTTTATCCTCGAGGAGCAAGCAATGTTTGCTGTGCAGTGTGCAGCACAATTACCCCTGTTATTCCTGTTCTTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGTTGTAGAACATTGCTAATGCACGCACGTGGAGCTACTACTGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTACCAGATTCTAATCAAATGAACCATATCCGTTGTGGGAACTGCCGGACAACACTCATGTATCCTCATGGAGCTCCCTCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCGATATGACCAATGGAAGGCCGCCAACTCCTGTACTGACACCTAATGAAACAACCAGCTCCGAAACGTCAAGACCTCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCTATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGA

Protein sequence

>Msa0247790

MRNHIMCTGCRNILLYPRGASNMTNVRPPVPAQRPNETTAAPKRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHARGATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPHGAPSVKCAVCHYITNVDMTNGRPPTPVLTPNETTSSETSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKK*