AlfalfaGEDB | Msa0249980

M. sativa cultivar zhongmu-4 / Msa0249980

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249980	XP_013463268.1	88.710	372	39	1	23	394	15	383	0.0	661

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249980	A0A072VGJ1	88.710	372	39	1	23	394	15	383	0.0	661

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TFs/TRs:

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Gene ID	Type	Classification
Msa0249980	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249980	MtrunA17_Chr2g0296111	88.710	372	39	1	23	394	15	383	0.0	661
Msa0249980	MtrunA17_Chr2g0296121	67.089	395	125	3	1	394	79	469	0.0	520
Msa0249980	MtrunA17_Chr2g0296151	66.329	395	118	4	1	393	1	382	0.0	518
Msa0249980	MtrunA17_Chr2g0295741	63.797	395	136	4	1	394	1	389	2.59e-171	483
Msa0249980	MtrunA17_Chr2g0295731	64.156	385	121	4	5	385	10	381	1.19e-170	481
Msa0249980	MtrunA17_Chr4g0067121	54.467	347	152	4	46	390	47	389	7.61e-125	365
Msa0249980	MtrunA17_Chr2g0296711	53.488	344	154	3	52	391	55	396	1.66e-123	363
Msa0249980	MtrunA17_Chr2g0296221	52.533	375	165	6	25	389	51	422	1.39e-122	361
Msa0249980	MtrunA17_Chr2g0296741	53.561	351	157	3	39	385	59	407	1.94e-122	360
Msa0249980	MtrunA17_Chr2g0296251	50.386	389	148	6	34	381	14	398	8.99e-122	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249980	AT5G07900.1	34.831	356	217	7	34	378	48	399	4.83e-64	210
Msa0249980	AT1G21150.3	30.968	310	207	3	41	346	10	316	3.52e-43	154
Msa0249980	AT1G21150.1	32.000	300	197	3	51	346	56	352	1.09e-42	154
Msa0249980	AT1G21150.2	32.000	300	197	3	51	346	120	416	5.19e-42	153
Msa0249980	AT5G64950.1	27.832	309	205	5	41	337	26	328	2.74e-30	120
Msa0249980	AT1G61980.3	28.492	358	205	9	51	366	52	400	1.73e-29	118
Msa0249980	AT1G61980.2	28.492	358	205	9	51	366	52	400	1.73e-29	118
Msa0249980	AT1G61980.1	28.492	358	205	9	51	366	52	400	1.73e-29	118
Msa0249980	AT1G61970.2	27.451	357	208	9	51	365	52	399	1.97e-29	118
Msa0249980	AT1G61970.7	27.451	357	208	9	51	365	52	399	1.97e-29	118

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Find 79 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAAAATTGTTGATG+AGG	0.598384	2_2:+37757219	None:intergenic
AAACTGATGGTCCTTTGGCA+AGG	0.547751	2_2:+37756454	None:intergenic
AAAGTCTGGAAGCAGATTGT+GGG	0.509506	2_2:+37757195	None:intergenic
AACTGATGGTCCTTTGGCAA+GGG	0.571808	2_2:+37756455	None:intergenic
AAGAAGTTGATAACAGAGTC+AGG	0.461266	2_2:+37757134	None:intergenic
AAGGCAACCACATTGTATGT+TGG	0.594814	2_2:-37756544	Msa0249980:CDS
AAGTCTGGAAGCAGATTGTG+GGG	0.672466	2_2:+37757196	None:intergenic
AAGTTGATGCCTTTAAGAAG+TGG	0.551383	2_2:-37756602	Msa0249980:CDS
AATGCTTTGGTTAAGGAGTC+GGG	0.471203	2_2:-37756760	Msa0249980:CDS
AATTTCAGCATGTCATGTGT+CGG	0.639746	2_2:+37756726	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTAATAACGTTGAAAAAGA+GGG	+	chr2_2:37756301-37756320	None:intergenic	30.0%
GAAAAATGGAGAGAAAATGT+TGG	+	chr2_2:37756332-37756351	None:intergenic	30.0%
AAAAGCCAAAATTGTTGATG+AGG	+	chr2_2:37756394-37756413	None:intergenic	30.0%
CTTAAAACTAATTGCGTATG+TGG	+	chr2_2:37756444-37756463	None:intergenic	30.0%
GAAAATGTTAACAATGTCAG+AGG	+	chr2_2:37756630-37756649	None:intergenic	30.0%
TATCTGTAAGGAAAACATTG+TGG	-	chr2_2:37756978-37756997	Msa0249980:CDS	30.0%
ATCTGTAAGGAAAACATTGT+GGG	-	chr2_2:37756979-37756998	Msa0249980:CDS	30.0%
ATGTTCTACAAGCATTTAGA+AGG	-	chr2_2:37757047-37757066	Msa0249980:CDS	30.0%
GGTAATAACGTTGAAAAAGA+GGG	+	chr2_2:37756301-37756320	None:intergenic	30.0%
GAAAAATGGAGAGAAAATGT+TGG	+	chr2_2:37756332-37756351	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	37756224	37757408	37756224	ID=Msa0249980;Name=Msa0249980
chr2_2	mRNA	37756224	37757408	37756224	ID=Msa0249980-mRNA-1;Parent=Msa0249980;Name=Msa0249980-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|394
chr2_2	exon	37756224	37757408	37756224	ID=Msa0249980-mRNA-1:exon:11909;Parent=Msa0249980-mRNA-1
chr2_2	CDS	37756224	37757408	37756224	ID=Msa0249980-mRNA-1:cds;Parent=Msa0249980-mRNA-1

Gene Sequence

>Msa0249980

ATGTTGAATATCCATCGTCATAGAGCTTTTCTCTATCTCAAGACCTTAACTTTCTCACCAAACCCTAACCCTAACCCTCTTTTTCAACGTTATTACCCATCATCACCAACATTTTCTCTCCATTTTTCCACCAACTCTTCAGATTCAACCTCTTTTGCAGTCTCCTACCTCATCAACAATTTTGGCTTTTCCCCACAATCTGCTTCCAGACTTTGCTCCACATACGCAATTAGTTTTAAGACTGCCCAAAAACCTGACTCTGTTATCAACTTCTTTAGAAACTATGGTTTTTCAGATTCCCAACTACGTCTTACCATTTCAAAGGAACCATGGCTACTTTCCTGCAACCCTTCTAAAAGGGTTTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCTTCTACCTCTGACATTGTTAACATTTTCACTAAGAGCCCCTACATCCTGAAAACAAGCCTCAATAATAAAATTATCCAAGCCTATCAATTGATTTATAGATTCTTGCAATCAGACAAGGACATTATTGATTGTGTAATTCGCAATCCATCTTTCTTCGGAGACGCTCGTGTGGTATCTAACATTAGATTGCTGATTGCCAATGGAGTGGCCGACTCAAACATTAAAAGAATGCTTTGGTTAAGGAGTCGGGCATTTCAGACACCGACACATGACATGCTGAAATTGGTGGAGGAATTAAAGGATTTGGGTTTTGCTACTTCAAAAACAACCTTTGGTGTAGCATTGCATGCCAAACTATCTGTAAGGAAAACATTGTGGGAAGAGAAAGTTGATGCCTTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTACAAGCATTTAGAAGGCAACCACATTGTATGTTGGTATCCATTGATAAAATTAATTTAGTGATGAACTTTTGGGTCAATCAGTTAGGTTGGGATGCACTTGCCCTTGCCAAAGGACCATCAGTTTTTTCTTTAAGTTTCGAAAAGAGGGTCCTTCCAAGGGCCTCTGTATTGCAATATCTTCTGAAGAAAGGTTTGCGAAAAAAGGATGCAAGCTTAACTTGTCCATTTGTAGTGCCTGAAAAGCTGTTTCTTGATAAGTGTATAAAGGGTATTAAGGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACTCAATCTTGCTTACACCATGGACAAAACATGCACATCGTGA

Protein sequence

>Msa0249980

MLNIHRHRAFLYLKTLTFSPNPNPNPLFQRYYPSSPTFSLHFSTNSSDSTSFAVSYLINNFGFSPQSASRLCSTYAISFKTAQKPDSVINFFRNYGFSDSQLRLTISKEPWLLSCNPSKRVLPKFQFFLSKGASTSDIVNIFTKSPYILKTSLNNKIIQAYQLIYRFLQSDKDIIDCVIRNPSFFGDARVVSNIRLLIANGVADSNIKRMLWLRSRAFQTPTHDMLKLVEELKDLGFATSKTTFGVALHAKLSVRKTLWEEKVDAFKKWGWSDEDVLQAFRRQPHCMLVSIDKINLVMNFWVNQLGWDALALAKGPSVFSLSFEKRVLPRASVLQYLLKKGLRKKDASLTCPFVVPEKLFLDKCIKGIKESSYLLKLYEEKLNLAYTMDKTCTS*