Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250320 | XP_003595715.2 | 77.586 | 232 | 25 | 4 | 1 | 231 | 7 | 212 | 7.39e-98 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250320 | sp|Q8LDR0|DOF54_ARATH | 67.708 | 96 | 28 | 2 | 12 | 107 | 34 | 126 | 1.15e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250320 | A0A396JAA5 | 77.586 | 232 | 25 | 4 | 1 | 231 | 7 | 212 | 3.53e-98 | 294 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0250320 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250320 | MtrunA17_Chr2g0308011 | 77.586 | 232 | 25 | 4 | 1 | 231 | 7 | 212 | 6.80e-102 | 294 |
| Msa0250320 | MtrunA17_Chr4g0061761 | 37.282 | 287 | 91 | 8 | 29 | 231 | 39 | 320 | 1.15e-34 | 125 |
| Msa0250320 | MtrunA17_Chr2g0328021 | 62.025 | 79 | 30 | 0 | 14 | 92 | 46 | 124 | 4.57e-28 | 107 |
| Msa0250320 | MtrunA17_Chr3g0127201 | 80.702 | 57 | 11 | 0 | 29 | 85 | 26 | 82 | 5.20e-27 | 105 |
| Msa0250320 | MtrunA17_Chr3g0126201 | 62.162 | 74 | 28 | 0 | 25 | 98 | 46 | 119 | 7.35e-26 | 102 |
| Msa0250320 | MtrunA17_Chr2g0326001 | 64.000 | 75 | 20 | 1 | 10 | 84 | 27 | 94 | 7.73e-26 | 102 |
| Msa0250320 | MtrunA17_Chr4g0031411 | 42.188 | 128 | 61 | 2 | 29 | 155 | 74 | 189 | 1.07e-25 | 102 |
| Msa0250320 | MtrunA17_Chr8g0341671 | 73.333 | 60 | 16 | 0 | 30 | 89 | 20 | 79 | 2.18e-25 | 99.0 |
| Msa0250320 | MtrunA17_Chr8g0346551 | 78.182 | 55 | 12 | 0 | 30 | 84 | 24 | 78 | 2.33e-25 | 100 |
| Msa0250320 | MtrunA17_Chr4g0030051 | 64.935 | 77 | 26 | 1 | 29 | 104 | 40 | 116 | 3.43e-25 | 100 |
| Msa0250320 | MtrunA17_Chr1g0188851 | 70.690 | 58 | 17 | 0 | 29 | 86 | 42 | 99 | 3.59e-25 | 100 |
| Msa0250320 | MtrunA17_Chr4g0010151 | 48.182 | 110 | 46 | 1 | 2 | 100 | 54 | 163 | 6.94e-25 | 100 |
| Msa0250320 | MtrunA17_Chr2g0282441 | 73.214 | 56 | 15 | 0 | 26 | 81 | 21 | 76 | 8.02e-25 | 100 |
| Msa0250320 | MtrunA17_Chr8g0374251 | 62.687 | 67 | 25 | 0 | 30 | 96 | 68 | 134 | 1.09e-24 | 99.8 |
| Msa0250320 | MtrunA17_Chr7g0223311 | 70.312 | 64 | 19 | 0 | 29 | 92 | 76 | 139 | 1.15e-24 | 100 |
| Msa0250320 | MtrunA17_Chr8g0374111 | 60.563 | 71 | 28 | 0 | 30 | 100 | 29 | 99 | 1.73e-24 | 97.1 |
| Msa0250320 | MtrunA17_Chr3g0117601 | 76.364 | 55 | 13 | 0 | 26 | 80 | 57 | 111 | 2.23e-24 | 99.0 |
| Msa0250320 | MtrunA17_Chr4g0047001 | 57.317 | 82 | 34 | 1 | 31 | 111 | 56 | 137 | 3.51e-24 | 99.0 |
| Msa0250320 | MtrunA17_Chr8g0367161 | 61.765 | 68 | 26 | 0 | 25 | 92 | 27 | 94 | 5.25e-24 | 97.8 |
| Msa0250320 | MtrunA17_Chr2g0282051 | 55.128 | 78 | 34 | 1 | 9 | 86 | 25 | 101 | 1.33e-23 | 95.5 |
| Msa0250320 | MtrunA17_Chr1g0177251 | 64.516 | 62 | 22 | 0 | 23 | 84 | 5 | 66 | 6.74e-23 | 94.0 |
| Msa0250320 | MtrunA17_Chr8g0355261 | 52.055 | 73 | 35 | 0 | 13 | 85 | 101 | 173 | 7.31e-23 | 95.9 |
| Msa0250320 | MtrunA17_Chr7g0217581 | 61.429 | 70 | 26 | 1 | 30 | 99 | 232 | 300 | 1.20e-22 | 95.9 |
| Msa0250320 | MtrunA17_Chr3g0092111 | 60.870 | 69 | 27 | 0 | 30 | 98 | 136 | 204 | 1.42e-22 | 95.1 |
| Msa0250320 | MtrunA17_Chr7g0237921 | 72.222 | 54 | 15 | 0 | 31 | 84 | 77 | 130 | 1.45e-22 | 94.0 |
| Msa0250320 | MtrunA17_Chr5g0411951 | 74.510 | 51 | 13 | 0 | 30 | 80 | 43 | 93 | 1.46e-22 | 94.0 |
| Msa0250320 | MtrunA17_Chr2g0282511 | 79.592 | 49 | 10 | 0 | 29 | 77 | 44 | 92 | 2.26e-22 | 93.2 |
| Msa0250320 | MtrunA17_Chr6g0453321 | 53.247 | 77 | 31 | 1 | 14 | 85 | 115 | 191 | 3.25e-22 | 94.4 |
| Msa0250320 | MtrunA17_Chr7g0254161 | 52.055 | 73 | 35 | 0 | 11 | 83 | 82 | 154 | 5.34e-22 | 93.2 |
| Msa0250320 | MtrunA17_Chr6g0460721 | 46.429 | 84 | 45 | 0 | 30 | 113 | 89 | 172 | 3.89e-21 | 90.1 |
| Msa0250320 | MtrunA17_Chr2g0283811 | 64.815 | 54 | 19 | 0 | 30 | 83 | 47 | 100 | 4.30e-21 | 86.3 |
| Msa0250320 | MtrunA17_Chr4g0042481 | 61.017 | 59 | 23 | 0 | 30 | 88 | 122 | 180 | 6.23e-21 | 90.5 |
| Msa0250320 | MtrunA17_Chr4g0047761 | 70.175 | 57 | 16 | 1 | 30 | 86 | 72 | 127 | 1.07e-20 | 88.6 |
| Msa0250320 | MtrunA17_Chr6g0460731 | 43.617 | 94 | 52 | 1 | 30 | 122 | 96 | 189 | 1.39e-19 | 86.3 |
| Msa0250320 | MtrunA17_Chr5g0417551 | 58.730 | 63 | 26 | 0 | 30 | 92 | 127 | 189 | 7.44e-19 | 84.0 |
| Msa0250320 | MtrunA17_Chr5g0417601 | 60.714 | 56 | 22 | 0 | 28 | 83 | 138 | 193 | 8.29e-19 | 84.0 |
| Msa0250320 | MtrunA17_Chr5g0417561 | 58.730 | 63 | 26 | 0 | 30 | 92 | 119 | 181 | 1.47e-18 | 83.2 |
| Msa0250320 | MtrunA17_Chr5g0417571 | 59.649 | 57 | 23 | 0 | 29 | 85 | 137 | 193 | 1.67e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250320 | AT5G60850.1 | 67.708 | 96 | 28 | 2 | 12 | 107 | 34 | 126 | 1.17e-37 | 134 |
| Msa0250320 | AT5G60200.1 | 50.926 | 108 | 41 | 2 | 27 | 134 | 52 | 147 | 1.38e-29 | 111 |
| Msa0250320 | AT3G45610.1 | 62.651 | 83 | 26 | 1 | 29 | 111 | 39 | 116 | 2.41e-29 | 110 |
| Msa0250320 | AT1G51700.1 | 67.568 | 74 | 24 | 0 | 19 | 92 | 22 | 95 | 5.98e-29 | 108 |
| Msa0250320 | AT5G66940.1 | 63.636 | 77 | 27 | 1 | 30 | 105 | 32 | 108 | 1.86e-27 | 105 |
| Msa0250320 | AT3G61850.2 | 72.581 | 62 | 17 | 0 | 30 | 91 | 62 | 123 | 2.44e-26 | 103 |
| Msa0250320 | AT3G61850.3 | 72.581 | 62 | 17 | 0 | 30 | 91 | 62 | 123 | 2.44e-26 | 103 |
| Msa0250320 | AT5G65590.1 | 74.194 | 62 | 16 | 0 | 30 | 91 | 41 | 102 | 2.49e-26 | 103 |
| Msa0250320 | AT3G61850.1 | 72.581 | 62 | 17 | 0 | 30 | 91 | 74 | 135 | 3.03e-26 | 103 |
| Msa0250320 | AT3G61850.5 | 72.581 | 62 | 17 | 0 | 30 | 91 | 62 | 123 | 3.95e-26 | 103 |
| Msa0250320 | AT3G61850.4 | 72.581 | 62 | 17 | 0 | 30 | 91 | 74 | 135 | 4.32e-26 | 103 |
| Msa0250320 | AT3G21270.1 | 84.615 | 52 | 8 | 0 | 30 | 81 | 29 | 80 | 1.38e-25 | 99.8 |
| Msa0250320 | AT3G55370.1 | 64.179 | 67 | 24 | 0 | 29 | 95 | 75 | 141 | 1.96e-25 | 102 |
| Msa0250320 | AT3G55370.2 | 64.179 | 67 | 24 | 0 | 29 | 95 | 75 | 141 | 2.26e-25 | 102 |
| Msa0250320 | AT3G52440.1 | 53.191 | 94 | 39 | 2 | 27 | 116 | 22 | 114 | 2.86e-25 | 99.8 |
| Msa0250320 | AT3G55370.3 | 64.179 | 67 | 24 | 0 | 29 | 95 | 120 | 186 | 3.74e-25 | 101 |
| Msa0250320 | AT1G07640.1 | 75.862 | 58 | 13 | 1 | 30 | 86 | 21 | 78 | 3.80e-25 | 100 |
| Msa0250320 | AT1G07640.2 | 75.862 | 58 | 13 | 1 | 30 | 86 | 77 | 134 | 4.09e-25 | 101 |
| Msa0250320 | AT3G52440.2 | 56.180 | 89 | 34 | 2 | 32 | 116 | 46 | 133 | 4.48e-25 | 99.8 |
| Msa0250320 | AT1G07640.3 | 75.862 | 58 | 13 | 1 | 30 | 86 | 85 | 142 | 5.35e-25 | 100 |
| Msa0250320 | AT4G24060.1 | 75.000 | 56 | 14 | 0 | 29 | 84 | 52 | 107 | 1.35e-24 | 100 |
| Msa0250320 | AT2G28510.1 | 70.492 | 61 | 18 | 0 | 29 | 89 | 47 | 107 | 1.43e-24 | 99.0 |
| Msa0250320 | AT4G38000.1 | 71.429 | 56 | 16 | 0 | 29 | 84 | 40 | 95 | 1.53e-24 | 97.8 |
| Msa0250320 | AT4G21050.1 | 60.274 | 73 | 28 | 1 | 32 | 104 | 26 | 97 | 2.87e-24 | 96.3 |
| Msa0250320 | AT1G28310.1 | 73.684 | 57 | 15 | 0 | 30 | 86 | 27 | 83 | 4.32e-24 | 98.2 |
| Msa0250320 | AT2G28810.2 | 75.472 | 53 | 13 | 0 | 29 | 81 | 76 | 128 | 4.56e-24 | 98.2 |
| Msa0250320 | AT2G37590.1 | 68.966 | 58 | 18 | 0 | 29 | 86 | 88 | 145 | 4.59e-24 | 98.2 |
| Msa0250320 | AT1G21340.1 | 70.492 | 61 | 18 | 0 | 29 | 89 | 37 | 97 | 4.79e-24 | 97.1 |
| Msa0250320 | AT1G28310.2 | 73.684 | 57 | 15 | 0 | 30 | 86 | 51 | 107 | 6.69e-24 | 97.8 |
| Msa0250320 | AT2G28810.1 | 75.472 | 53 | 13 | 0 | 29 | 81 | 93 | 145 | 7.08e-24 | 97.8 |
| Msa0250320 | AT2G46590.2 | 57.732 | 97 | 40 | 1 | 30 | 125 | 80 | 176 | 7.57e-24 | 98.2 |
| Msa0250320 | AT2G46590.1 | 57.732 | 97 | 40 | 1 | 30 | 125 | 68 | 164 | 8.75e-24 | 97.8 |
| Msa0250320 | AT4G00940.1 | 79.245 | 53 | 11 | 0 | 32 | 84 | 70 | 122 | 1.24e-23 | 96.7 |
| Msa0250320 | AT4G00940.3 | 79.245 | 53 | 11 | 0 | 32 | 84 | 70 | 122 | 1.24e-23 | 96.7 |
| Msa0250320 | AT4G00940.2 | 79.245 | 53 | 11 | 0 | 32 | 84 | 70 | 122 | 1.24e-23 | 96.7 |
| Msa0250320 | AT3G50410.1 | 72.881 | 59 | 15 | 1 | 30 | 87 | 30 | 88 | 1.73e-23 | 95.1 |
| Msa0250320 | AT1G64620.1 | 62.121 | 66 | 18 | 1 | 12 | 77 | 38 | 96 | 3.56e-23 | 96.3 |
| Msa0250320 | AT5G02460.1 | 69.643 | 56 | 17 | 0 | 29 | 84 | 94 | 149 | 1.41e-22 | 95.1 |
| Msa0250320 | AT1G47655.1 | 70.175 | 57 | 15 | 1 | 23 | 77 | 20 | 76 | 3.42e-22 | 90.9 |
| Msa0250320 | AT4G21040.1 | 51.852 | 81 | 39 | 0 | 32 | 112 | 27 | 107 | 4.38e-22 | 91.3 |
| Msa0250320 | AT5G62940.1 | 58.333 | 72 | 23 | 1 | 9 | 80 | 59 | 123 | 8.04e-22 | 92.8 |
| Msa0250320 | AT3G47500.1 | 53.333 | 75 | 35 | 0 | 11 | 85 | 91 | 165 | 1.33e-21 | 92.8 |
| Msa0250320 | AT1G29160.1 | 55.714 | 70 | 31 | 0 | 30 | 99 | 62 | 131 | 3.64e-21 | 87.4 |
| Msa0250320 | AT4G21080.1 | 51.220 | 82 | 40 | 0 | 32 | 113 | 27 | 108 | 4.82e-21 | 88.6 |
| Msa0250320 | AT5G39660.3 | 68.519 | 54 | 17 | 0 | 30 | 83 | 138 | 191 | 4.88e-21 | 91.3 |
| Msa0250320 | AT5G39660.1 | 68.519 | 54 | 17 | 0 | 30 | 83 | 138 | 191 | 4.88e-21 | 91.3 |
| Msa0250320 | AT5G39660.2 | 68.519 | 54 | 17 | 0 | 30 | 83 | 138 | 191 | 4.88e-21 | 91.3 |
| Msa0250320 | AT2G34140.1 | 66.667 | 54 | 18 | 0 | 30 | 83 | 58 | 111 | 5.09e-21 | 86.7 |
| Msa0250320 | AT1G69570.1 | 68.519 | 54 | 17 | 0 | 30 | 83 | 132 | 185 | 6.47e-21 | 90.5 |
| Msa0250320 | AT5G62430.1 | 40.310 | 129 | 71 | 2 | 10 | 132 | 29 | 157 | 1.03e-20 | 88.6 |
| Msa0250320 | AT1G26790.1 | 64.815 | 54 | 19 | 0 | 30 | 83 | 111 | 164 | 2.35e-19 | 85.9 |
| Msa0250320 | AT4G21030.1 | 62.295 | 61 | 21 | 2 | 32 | 91 | 23 | 82 | 7.58e-16 | 73.6 |
Find 63 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATGATGTTGTTTCTTA+TGG | 0.092194 | 2_2:+38767717 | Msa0250320:CDS |
| CAGCAATTATCATATGAATT+TGG | 0.217694 | 2_2:+38769057 | Msa0250320:CDS |
| TCTTTGATTTCTTTGATTTA+CGG | 0.270159 | 2_2:-38767521 | None:intergenic |
| CCAATGATGTTGTTTCTTAT+GGG | 0.276734 | 2_2:+38767718 | Msa0250320:CDS |
| CCGTTGATCATCAGTCTTAC+TGG | 0.307401 | 2_2:+38769109 | Msa0250320:CDS |
| CTTTGATTTCTTTGATTTAC+GGG | 0.312389 | 2_2:-38767520 | None:intergenic |
| GATGTTGTTTCTTATGGGTT+TGG | 0.359219 | 2_2:+38767723 | Msa0250320:CDS |
| AAGTTTGAACCCTCTGACCC+TGG | 0.367346 | 2_2:+38768990 | Msa0250320:intron |
| GAGGTTGTAGTTGTTATAGT+AGG | 0.369381 | 2_2:-38767412 | None:intergenic |
| GATTCTGACTTATCAGCTTC+CGG | 0.371724 | 2_2:-38767600 | None:intergenic |
| ATGTTGTTTCTTATGGGTTT+GGG | 0.381004 | 2_2:+38767724 | Msa0250320:CDS |
| GTAAGAACTGCCGTTGCTAC+TGG | 0.383832 | 2_2:+38767454 | Msa0250320:CDS |
| ATCATATGAATTTGGATCGT+TGG | 0.385694 | 2_2:+38769065 | Msa0250320:CDS |
| AACCCTCTGACCCTGGGTCC+TGG | 0.393152 | 2_2:+38768997 | Msa0250320:CDS |
| ATGAATTTGGATCGTTGGAT+TGG | 0.395945 | 2_2:+38769070 | Msa0250320:CDS |
| ATGAACAAGTTAATAGCTTC+AGG | 0.409559 | 2_2:+38767673 | Msa0250320:CDS |
| CTGGGTCCTGGCAACGCCGC+TGG | 0.413711 | 2_2:+38769009 | Msa0250320:CDS |
| CACGCCAACACCGCTTCAAC+CGG | 0.414399 | 2_2:+38767581 | Msa0250320:CDS |
| TCTCCACCAGCGGCGTTGCC+AGG | 0.446522 | 2_2:-38769015 | None:intergenic |
| GTTACGAAGGACACCACCTT+TGG | 0.449873 | 2_2:-38767478 | None:intergenic |
| TGAATTTGGATCGTTGGATT+GGG | 0.460034 | 2_2:+38769071 | Msa0250320:CDS |
| CCCATAAGAAACAACATCAT+TGG | 0.473053 | 2_2:-38767718 | None:intergenic |
| CAGTGAAGGTTCAACCGTTA+CGG | 0.473795 | 2_2:+38767632 | Msa0250320:CDS |
| CTTACTGGACAAACTCTCAT+TGG | 0.474868 | 2_2:+38769124 | Msa0250320:CDS |
| GGTTGCTGCTGAAGCGGTGA+TGG | 0.487938 | 2_2:-38767559 | None:intergenic |
| GGTCCTGGCAACGCCGCTGG+TGG | 0.493064 | 2_2:+38769012 | Msa0250320:CDS |
| TTGCCAGGACCCAGGGTCAG+AGG | 0.497270 | 2_2:-38769000 | None:intergenic |
| ATGATAATTCTGGTTGTGGT+GGG | 0.505153 | 2_2:-38767334 | None:intergenic |
| AACGGTTGAACCTTCACTGT+TGG | 0.507548 | 2_2:-38767628 | None:intergenic |
| CAGCGGCGTTGCCAGGACCC+AGG | 0.510126 | 2_2:-38769008 | None:intergenic |
| GCTTCCGGTTGAAGCGGTGT+TGG | 0.514188 | 2_2:-38767585 | None:intergenic |
| CAACGCCGCTGGTGGAGACT+CGG | 0.515550 | 2_2:+38769020 | Msa0250320:CDS |
| GATGATAATTCTGGTTGTGG+TGG | 0.522596 | 2_2:-38767335 | None:intergenic |
| GGATCGTTGGATTGGGAAGG+TGG | 0.526946 | 2_2:+38769078 | Msa0250320:CDS |
| GATGATGATAATTCTGGTTG+TGG | 0.534880 | 2_2:-38767338 | None:intergenic |
| TTTGGATCGTTGGATTGGGA+AGG | 0.535121 | 2_2:+38769075 | Msa0250320:CDS |
| AGCGGCGTTGCCAGGACCCA+GGG | 0.542817 | 2_2:-38769007 | None:intergenic |
| TTACGGGAACAACCGCCGAC+GGG | 0.545236 | 2_2:-38767504 | None:intergenic |
| TGCCAGGACCCAGGGTCAGA+GGG | 0.545776 | 2_2:-38768999 | None:intergenic |
| GAAATTCATTCCATGGGAGG+TGG | 0.546192 | 2_2:+38767273 | None:intergenic |
| GTCCTTCGTAACGTCCCCGT+CGG | 0.571821 | 2_2:+38767489 | Msa0250320:CDS |
| TGCCGTTGCTACTGGACCAA+AGG | 0.572400 | 2_2:+38767462 | Msa0250320:CDS |
| AGTTTGAACCCTCTGACCCT+GGG | 0.575184 | 2_2:+38768991 | Msa0250320:intron |
| TTATCAGCTTCCGGTTGAAG+CGG | 0.576921 | 2_2:-38767591 | None:intergenic |
| CTTCGTAACGTCCCCGTCGG+CGG | 0.581756 | 2_2:+38767492 | Msa0250320:CDS |
| CACCTTTGGTCCAGTAGCAA+CGG | 0.585648 | 2_2:-38767464 | None:intergenic |
| TTTACGGGAACAACCGCCGA+CGG | 0.588711 | 2_2:-38767505 | None:intergenic |
| TGGCGTGGTTGCTGCTGAAG+CGG | 0.595346 | 2_2:-38767565 | None:intergenic |
| CGGTTGAAGCGGTGTTGGCG+TGG | 0.597564 | 2_2:-38767580 | None:intergenic |
| CGCCGACGGGGACGTTACGA+AGG | 0.605026 | 2_2:-38767491 | None:intergenic |
| CGTTGCTACTGGACCAAAGG+TGG | 0.606040 | 2_2:+38767465 | Msa0250320:CDS |
| TATAACAGAGTTAACCGTAA+CGG | 0.620352 | 2_2:-38767646 | None:intergenic |
| GAATCTCACTCCAACAGTGA+AGG | 0.622700 | 2_2:+38767618 | Msa0250320:CDS |
| ATTCATATGATAATTGCTGA+TGG | 0.628709 | 2_2:-38769053 | None:intergenic |
| TAAATCAAAGAAATCAAAGA+CGG | 0.630139 | 2_2:+38767524 | Msa0250320:CDS |
| CAAGAAATTCATTCCATGGG+AGG | 0.639402 | 2_2:+38767270 | None:intergenic |
| CCAGTAAGACTGATGATCAA+CGG | 0.644844 | 2_2:-38769109 | None:intergenic |
| TGGGAATGATCAAGTACATG+TGG | 0.648978 | 2_2:+38767743 | Msa0250320:CDS |
| TACGGGAACAACCGCCGACG+GGG | 0.650760 | 2_2:-38767503 | None:intergenic |
| TGGTTGAACTTGAAGTTACG+AGG | 0.652946 | 2_2:-38767698 | None:intergenic |
| CAAGTACATGTGGTACAGCG+TGG | 0.686001 | 2_2:+38767753 | Msa0250320:CDS |
| CATCACCGAGTCTCCACCAG+CGG | 0.688967 | 2_2:-38769025 | None:intergenic |
| GTGTTGAAGGAATTACAGCG+AGG | 0.733816 | 2_2:-38767381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGAAAAAAATTAAAATTTT+AGG | - | chr2_2:38767846-38767865 | None:intergenic | 10.0% |
| !!! | CAAATTATATATCAATTTTA+TGG | + | chr2_2:38768253-38768272 | Msa0250320:intron | 10.0% |
| !!! | TGGAAAAAAATTAAAATTTT+AGG | - | chr2_2:38767846-38767865 | None:intergenic | 10.0% |
| !!! | CAAATTATATATCAATTTTA+TGG | + | chr2_2:38768253-38768272 | Msa0250320:intron | 10.0% |
| !!! | ATTGATTCTTCATTTTTTAA+AGG | - | chr2_2:38768458-38768477 | None:intergenic | 15.0% |
| !! | AGACATTAGAATAATTAAAA+AGG | + | chr2_2:38768758-38768777 | Msa0250320:intron | 15.0% |
| !!! | ATTGATTCTTCATTTTTTAA+AGG | - | chr2_2:38768458-38768477 | None:intergenic | 15.0% |
| !! | AGACATTAGAATAATTAAAA+AGG | + | chr2_2:38768758-38768777 | Msa0250320:intron | 15.0% |
| !!! | TCTTTGATTTCTTTGATTTA+CGG | - | chr2_2:38767524-38767543 | None:intergenic | 20.0% |
| !! | TAAATCAAAGAAATCAAAGA+CGG | + | chr2_2:38767524-38767543 | Msa0250320:CDS | 20.0% |
| !! | TTCTTAAAGGCAAAATTAAA+AGG | - | chr2_2:38768103-38768122 | None:intergenic | 20.0% |
| !! | AAAAGACAAATCAATGTAAA+AGG | - | chr2_2:38768133-38768152 | None:intergenic | 20.0% |
| !!! | TCTAGTATATTATATGGTTT+TGG | + | chr2_2:38768531-38768550 | Msa0250320:intron | 20.0% |
| !!! | TTTTGATGTCTTTAAGAAAA+TGG | - | chr2_2:38768601-38768620 | None:intergenic | 20.0% |
| !!! | TCTTTGATTTCTTTGATTTA+CGG | - | chr2_2:38767524-38767543 | None:intergenic | 20.0% |
| !! | TAAATCAAAGAAATCAAAGA+CGG | + | chr2_2:38767524-38767543 | Msa0250320:CDS | 20.0% |
| !! | TTCTTAAAGGCAAAATTAAA+AGG | - | chr2_2:38768103-38768122 | None:intergenic | 20.0% |
| !! | AAAAGACAAATCAATGTAAA+AGG | - | chr2_2:38768133-38768152 | None:intergenic | 20.0% |
| !!! | TCTAGTATATTATATGGTTT+TGG | + | chr2_2:38768531-38768550 | Msa0250320:intron | 20.0% |
| !!! | TTTTGATGTCTTTAAGAAAA+TGG | - | chr2_2:38768601-38768620 | None:intergenic | 20.0% |
| !! | CTTTGATTTCTTTGATTTAC+GGG | - | chr2_2:38767523-38767542 | None:intergenic | 25.0% |
| ! | GAGTAATTTATAAAAGTCAG+GGG | - | chr2_2:38767824-38767843 | None:intergenic | 25.0% |
| ! | GGAGTAATTTATAAAAGTCA+GGG | - | chr2_2:38767825-38767844 | None:intergenic | 25.0% |
| ! | AGGAGTAATTTATAAAAGTC+AGG | - | chr2_2:38767826-38767845 | None:intergenic | 25.0% |
| ! | TGCAAATTGTACATATTAAG+TGG | + | chr2_2:38768017-38768036 | Msa0250320:intron | 25.0% |
| ! | AAAAGGAAAATGCTTCTTAA+AGG | - | chr2_2:38768116-38768135 | None:intergenic | 25.0% |
| ! | ACCATATAATATACTAGATG+CGG | - | chr2_2:38768529-38768548 | None:intergenic | 25.0% |
| !!! | TATATTATATGGTTTTGGCA+GGG | + | chr2_2:38768536-38768555 | Msa0250320:intron | 25.0% |
| !!! | CACAATTTTATTGATTGATC+AGG | + | chr2_2:38768782-38768801 | Msa0250320:intron | 25.0% |
| ! | GATACAATGCTAAATGTTTA+CGG | - | chr2_2:38768842-38768861 | None:intergenic | 25.0% |
| ! | TAACATATTGTGTCTGTTAT+AGG | + | chr2_2:38768884-38768903 | Msa0250320:intron | 25.0% |
| ! | ATTCATATGATAATTGCTGA+TGG | - | chr2_2:38769056-38769075 | None:intergenic | 25.0% |
| ! | CAGCAATTATCATATGAATT+TGG | + | chr2_2:38769057-38769076 | Msa0250320:CDS | 25.0% |
| !! | CTTTGATTTCTTTGATTTAC+GGG | - | chr2_2:38767523-38767542 | None:intergenic | 25.0% |
| ! | GAGTAATTTATAAAAGTCAG+GGG | - | chr2_2:38767824-38767843 | None:intergenic | 25.0% |
| ! | GGAGTAATTTATAAAAGTCA+GGG | - | chr2_2:38767825-38767844 | None:intergenic | 25.0% |
| ! | AGGAGTAATTTATAAAAGTC+AGG | - | chr2_2:38767826-38767845 | None:intergenic | 25.0% |
| ! | TGCAAATTGTACATATTAAG+TGG | + | chr2_2:38768017-38768036 | Msa0250320:intron | 25.0% |
| ! | AAAAGGAAAATGCTTCTTAA+AGG | - | chr2_2:38768116-38768135 | None:intergenic | 25.0% |
| ! | ACCATATAATATACTAGATG+CGG | - | chr2_2:38768529-38768548 | None:intergenic | 25.0% |
| !!! | TATATTATATGGTTTTGGCA+GGG | + | chr2_2:38768536-38768555 | Msa0250320:intron | 25.0% |
| !!! | CACAATTTTATTGATTGATC+AGG | + | chr2_2:38768782-38768801 | Msa0250320:intron | 25.0% |
| ! | GATACAATGCTAAATGTTTA+CGG | - | chr2_2:38768842-38768861 | None:intergenic | 25.0% |
| ! | TAACATATTGTGTCTGTTAT+AGG | + | chr2_2:38768884-38768903 | Msa0250320:intron | 25.0% |
| ! | ATTCATATGATAATTGCTGA+TGG | - | chr2_2:38769056-38769075 | None:intergenic | 25.0% |
| ! | CAGCAATTATCATATGAATT+TGG | + | chr2_2:38769057-38769076 | Msa0250320:CDS | 25.0% |
| ! | GATGATGATGATGATAATTC+TGG | - | chr2_2:38767347-38767366 | None:intergenic | 30.0% |
| CAGTTCTTACAAAAATAACG+AGG | - | chr2_2:38767444-38767463 | None:intergenic | 30.0% | |
| TATAACAGAGTTAACCGTAA+CGG | - | chr2_2:38767649-38767668 | None:intergenic | 30.0% | |
| ATGAACAAGTTAATAGCTTC+AGG | + | chr2_2:38767673-38767692 | Msa0250320:CDS | 30.0% | |
| !! | ACCAATGATGTTGTTTCTTA+TGG | + | chr2_2:38767717-38767736 | Msa0250320:CDS | 30.0% |
| !! | CCAATGATGTTGTTTCTTAT+GGG | + | chr2_2:38767718-38767737 | Msa0250320:CDS | 30.0% |
| !! | ATGTTGTTTCTTATGGGTTT+GGG | + | chr2_2:38767724-38767743 | Msa0250320:CDS | 30.0% |
| CATATTAAGTGGTAAACCTA+TGG | + | chr2_2:38768028-38768047 | Msa0250320:intron | 30.0% | |
| TATCTAGTAAACATGGACAA+AGG | + | chr2_2:38768051-38768070 | Msa0250320:intron | 30.0% | |
| TCCGCATCTAGTATATTATA+TGG | + | chr2_2:38768525-38768544 | Msa0250320:intron | 30.0% | |
| !!! | GTATATTATATGGTTTTGGC+AGG | + | chr2_2:38768535-38768554 | Msa0250320:intron | 30.0% |
| ! | TTAGGATCGACCTTAAATTT+TGG | + | chr2_2:38768816-38768835 | Msa0250320:intron | 30.0% |
| ATGTTTACGGCCAAAATTTA+AGG | - | chr2_2:38768829-38768848 | None:intergenic | 30.0% | |
| ATCATATGAATTTGGATCGT+TGG | + | chr2_2:38769065-38769084 | Msa0250320:CDS | 30.0% | |
| ! | GATGATGATGATGATAATTC+TGG | - | chr2_2:38767347-38767366 | None:intergenic | 30.0% |
| CAGTTCTTACAAAAATAACG+AGG | - | chr2_2:38767444-38767463 | None:intergenic | 30.0% | |
| TATAACAGAGTTAACCGTAA+CGG | - | chr2_2:38767649-38767668 | None:intergenic | 30.0% | |
| ATGAACAAGTTAATAGCTTC+AGG | + | chr2_2:38767673-38767692 | Msa0250320:CDS | 30.0% | |
| !! | ACCAATGATGTTGTTTCTTA+TGG | + | chr2_2:38767717-38767736 | Msa0250320:CDS | 30.0% |
| !! | CCAATGATGTTGTTTCTTAT+GGG | + | chr2_2:38767718-38767737 | Msa0250320:CDS | 30.0% |
| !! | ATGTTGTTTCTTATGGGTTT+GGG | + | chr2_2:38767724-38767743 | Msa0250320:CDS | 30.0% |
| CATATTAAGTGGTAAACCTA+TGG | + | chr2_2:38768028-38768047 | Msa0250320:intron | 30.0% | |
| TATCTAGTAAACATGGACAA+AGG | + | chr2_2:38768051-38768070 | Msa0250320:intron | 30.0% | |
| TCCGCATCTAGTATATTATA+TGG | + | chr2_2:38768525-38768544 | Msa0250320:intron | 30.0% | |
| !!! | GTATATTATATGGTTTTGGC+AGG | + | chr2_2:38768535-38768554 | Msa0250320:intron | 30.0% |
| ! | TTAGGATCGACCTTAAATTT+TGG | + | chr2_2:38768816-38768835 | Msa0250320:intron | 30.0% |
| ATGTTTACGGCCAAAATTTA+AGG | - | chr2_2:38768829-38768848 | None:intergenic | 30.0% | |
| ATCATATGAATTTGGATCGT+TGG | + | chr2_2:38769065-38769084 | Msa0250320:CDS | 30.0% | |
| !!! | TGGAAATCTTTTTTGCGTTG+AGG | + | chr2_2:38767293-38767312 | Msa0250320:CDS | 35.0% |
| ! | ATGATAATTCTGGTTGTGGT+GGG | - | chr2_2:38767337-38767356 | None:intergenic | 35.0% |
| ! | GATGATGATAATTCTGGTTG+TGG | - | chr2_2:38767341-38767360 | None:intergenic | 35.0% |
| ! | GTAGGAGAATTTTGTGTTGA+AGG | - | chr2_2:38767397-38767416 | None:intergenic | 35.0% |
| GAGGTTGTAGTTGTTATAGT+AGG | - | chr2_2:38767415-38767434 | None:intergenic | 35.0% | |
| CCCATAAGAAACAACATCAT+TGG | - | chr2_2:38767721-38767740 | None:intergenic | 35.0% | |
| !! | GATGTTGTTTCTTATGGGTT+TGG | + | chr2_2:38767723-38767742 | Msa0250320:CDS | 35.0% |
| ATGCAGAGTAAAAAAGTCAG+AGG | - | chr2_2:38767876-38767895 | None:intergenic | 35.0% | |
| !! | TGTACCTTTTTGACTCTTCT+TGG | + | chr2_2:38767984-38768003 | Msa0250320:intron | 35.0% |
| TGAACCAAGAAGAGTCAAAA+AGG | - | chr2_2:38767991-38768010 | None:intergenic | 35.0% | |
| CCATGTTTACTAGATACCAT+AGG | - | chr2_2:38768047-38768066 | None:intergenic | 35.0% | |
| CCTATGGTATCTAGTAAACA+TGG | + | chr2_2:38768044-38768063 | Msa0250320:intron | 35.0% | |
| TGTGAGAACAATTCACAAAC+TGG | - | chr2_2:38768229-38768248 | None:intergenic | 35.0% | |
| CACGACTAAATTCACATGTA+AGG | + | chr2_2:38768483-38768502 | Msa0250320:intron | 35.0% | |
| GATCAGGACACAAAAATCTT+AGG | + | chr2_2:38768798-38768817 | Msa0250320:intron | 35.0% | |
| ATGAATTTGGATCGTTGGAT+TGG | + | chr2_2:38769070-38769089 | Msa0250320:CDS | 35.0% | |
| TGAATTTGGATCGTTGGATT+GGG | + | chr2_2:38769071-38769090 | Msa0250320:CDS | 35.0% | |
| !!! | TGGAAATCTTTTTTGCGTTG+AGG | + | chr2_2:38767293-38767312 | Msa0250320:CDS | 35.0% |
| ! | ATGATAATTCTGGTTGTGGT+GGG | - | chr2_2:38767337-38767356 | None:intergenic | 35.0% |
| ! | GATGATGATAATTCTGGTTG+TGG | - | chr2_2:38767341-38767360 | None:intergenic | 35.0% |
| ! | GTAGGAGAATTTTGTGTTGA+AGG | - | chr2_2:38767397-38767416 | None:intergenic | 35.0% |
| GAGGTTGTAGTTGTTATAGT+AGG | - | chr2_2:38767415-38767434 | None:intergenic | 35.0% | |
| CCCATAAGAAACAACATCAT+TGG | - | chr2_2:38767721-38767740 | None:intergenic | 35.0% | |
| !! | GATGTTGTTTCTTATGGGTT+TGG | + | chr2_2:38767723-38767742 | Msa0250320:CDS | 35.0% |
| ATGCAGAGTAAAAAAGTCAG+AGG | - | chr2_2:38767876-38767895 | None:intergenic | 35.0% | |
| !! | TGTACCTTTTTGACTCTTCT+TGG | + | chr2_2:38767984-38768003 | Msa0250320:intron | 35.0% |
| TGAACCAAGAAGAGTCAAAA+AGG | - | chr2_2:38767991-38768010 | None:intergenic | 35.0% | |
| CCATGTTTACTAGATACCAT+AGG | - | chr2_2:38768047-38768066 | None:intergenic | 35.0% | |
| CCTATGGTATCTAGTAAACA+TGG | + | chr2_2:38768044-38768063 | Msa0250320:intron | 35.0% | |
| TGTGAGAACAATTCACAAAC+TGG | - | chr2_2:38768229-38768248 | None:intergenic | 35.0% | |
| CACGACTAAATTCACATGTA+AGG | + | chr2_2:38768483-38768502 | Msa0250320:intron | 35.0% | |
| GATCAGGACACAAAAATCTT+AGG | + | chr2_2:38768798-38768817 | Msa0250320:intron | 35.0% | |
| ATGAATTTGGATCGTTGGAT+TGG | + | chr2_2:38769070-38769089 | Msa0250320:CDS | 35.0% | |
| TGAATTTGGATCGTTGGATT+GGG | + | chr2_2:38769071-38769090 | Msa0250320:CDS | 35.0% | |
| ! | GATGATAATTCTGGTTGTGG+TGG | - | chr2_2:38767338-38767357 | None:intergenic | 40.0% |
| AAAAATAACGAGGCTGAGAG+AGG | - | chr2_2:38767434-38767453 | None:intergenic | 40.0% | |
| GATTCTGACTTATCAGCTTC+CGG | - | chr2_2:38767603-38767622 | None:intergenic | 40.0% | |
| TGGTTGAACTTGAAGTTACG+AGG | - | chr2_2:38767701-38767720 | None:intergenic | 40.0% | |
| TGGGAATGATCAAGTACATG+TGG | + | chr2_2:38767743-38767762 | Msa0250320:CDS | 40.0% | |
| ! | AAAAAGTCAGAGGTGCATAG+TGG | - | chr2_2:38767866-38767885 | None:intergenic | 40.0% |
| TGCAACAGAGTTATGAGAGT+TGG | - | chr2_2:38767906-38767925 | None:intergenic | 40.0% | |
| CTCTCATAACTCTGTTGCAT+TGG | + | chr2_2:38767907-38767926 | Msa0250320:intron | 40.0% | |
| CAAACTCTAGTGAGAGAATG+TGG | - | chr2_2:38767966-38767985 | None:intergenic | 40.0% | |
| ! | AACATGGACAAAGGCATACA+AGG | + | chr2_2:38768060-38768079 | Msa0250320:intron | 40.0% |
| AAGTGTCTAACCCTTGTTCT+CGG | + | chr2_2:38768182-38768201 | Msa0250320:intron | 40.0% | |
| CAAACTGGAGTTTAGCAAAG+CGG | - | chr2_2:38768214-38768233 | None:intergenic | 40.0% | |
| CCAGTAAGACTGATGATCAA+CGG | - | chr2_2:38769112-38769131 | None:intergenic | 40.0% | |
| CTTACTGGACAAACTCTCAT+TGG | + | chr2_2:38769124-38769143 | Msa0250320:CDS | 40.0% | |
| TCAGGGAAGATGAAAAAGAG+AGG | - | chr2_2:38769172-38769191 | None:intergenic | 40.0% | |
| ! | GATGATAATTCTGGTTGTGG+TGG | - | chr2_2:38767338-38767357 | None:intergenic | 40.0% |
| AAAAATAACGAGGCTGAGAG+AGG | - | chr2_2:38767434-38767453 | None:intergenic | 40.0% | |
| GATTCTGACTTATCAGCTTC+CGG | - | chr2_2:38767603-38767622 | None:intergenic | 40.0% | |
| TGGTTGAACTTGAAGTTACG+AGG | - | chr2_2:38767701-38767720 | None:intergenic | 40.0% | |
| TGGGAATGATCAAGTACATG+TGG | + | chr2_2:38767743-38767762 | Msa0250320:CDS | 40.0% | |
| ! | AAAAAGTCAGAGGTGCATAG+TGG | - | chr2_2:38767866-38767885 | None:intergenic | 40.0% |
| TGCAACAGAGTTATGAGAGT+TGG | - | chr2_2:38767906-38767925 | None:intergenic | 40.0% | |
| CTCTCATAACTCTGTTGCAT+TGG | + | chr2_2:38767907-38767926 | Msa0250320:intron | 40.0% | |
| CAAACTCTAGTGAGAGAATG+TGG | - | chr2_2:38767966-38767985 | None:intergenic | 40.0% | |
| ! | AACATGGACAAAGGCATACA+AGG | + | chr2_2:38768060-38768079 | Msa0250320:intron | 40.0% |
| AAGTGTCTAACCCTTGTTCT+CGG | + | chr2_2:38768182-38768201 | Msa0250320:intron | 40.0% | |
| CAAACTGGAGTTTAGCAAAG+CGG | - | chr2_2:38768214-38768233 | None:intergenic | 40.0% | |
| CCAGTAAGACTGATGATCAA+CGG | - | chr2_2:38769112-38769131 | None:intergenic | 40.0% | |
| CTTACTGGACAAACTCTCAT+TGG | + | chr2_2:38769124-38769143 | Msa0250320:CDS | 40.0% | |
| TCAGGGAAGATGAAAAAGAG+AGG | - | chr2_2:38769172-38769191 | None:intergenic | 40.0% | |
| GTGTTGAAGGAATTACAGCG+AGG | - | chr2_2:38767384-38767403 | None:intergenic | 45.0% | |
| TTATCAGCTTCCGGTTGAAG+CGG | - | chr2_2:38767594-38767613 | None:intergenic | 45.0% | |
| GAATCTCACTCCAACAGTGA+AGG | + | chr2_2:38767618-38767637 | Msa0250320:CDS | 45.0% | |
| AACGGTTGAACCTTCACTGT+TGG | - | chr2_2:38767631-38767650 | None:intergenic | 45.0% | |
| CAGTGAAGGTTCAACCGTTA+CGG | + | chr2_2:38767632-38767651 | Msa0250320:CDS | 45.0% | |
| TGCATCCTCTCAATGTTACG+TGG | - | chr2_2:38767794-38767813 | None:intergenic | 45.0% | |
| ! | CAGAGTTATGAGAGTTGGTC+AGG | - | chr2_2:38767901-38767920 | None:intergenic | 45.0% |
| ! | TTTGGATCGTTGGATTGGGA+AGG | + | chr2_2:38769075-38769094 | Msa0250320:CDS | 45.0% |
| CCGTTGATCATCAGTCTTAC+TGG | + | chr2_2:38769109-38769128 | Msa0250320:CDS | 45.0% | |
| GTGTTGAAGGAATTACAGCG+AGG | - | chr2_2:38767384-38767403 | None:intergenic | 45.0% | |
| TTATCAGCTTCCGGTTGAAG+CGG | - | chr2_2:38767594-38767613 | None:intergenic | 45.0% | |
| GAATCTCACTCCAACAGTGA+AGG | + | chr2_2:38767618-38767637 | Msa0250320:CDS | 45.0% | |
| AACGGTTGAACCTTCACTGT+TGG | - | chr2_2:38767631-38767650 | None:intergenic | 45.0% | |
| CAGTGAAGGTTCAACCGTTA+CGG | + | chr2_2:38767632-38767651 | Msa0250320:CDS | 45.0% | |
| TGCATCCTCTCAATGTTACG+TGG | - | chr2_2:38767794-38767813 | None:intergenic | 45.0% | |
| ! | CAGAGTTATGAGAGTTGGTC+AGG | - | chr2_2:38767901-38767920 | None:intergenic | 45.0% |
| ! | TTTGGATCGTTGGATTGGGA+AGG | + | chr2_2:38769075-38769094 | Msa0250320:CDS | 45.0% |
| CCGTTGATCATCAGTCTTAC+TGG | + | chr2_2:38769109-38769128 | Msa0250320:CDS | 45.0% | |
| !!! | AAATTATATATCAATTTTAT+GGG | + | chr2_2:38768254-38768273 | Msa0250320:intron | 5.0% |
| !!! | AAATTATATATCAATTTTAT+GGG | + | chr2_2:38768254-38768273 | Msa0250320:intron | 5.0% |
| GTAAGAACTGCCGTTGCTAC+TGG | + | chr2_2:38767454-38767473 | Msa0250320:CDS | 50.0% | |
| CACCTTTGGTCCAGTAGCAA+CGG | - | chr2_2:38767467-38767486 | None:intergenic | 50.0% | |
| GTTACGAAGGACACCACCTT+TGG | - | chr2_2:38767481-38767500 | None:intergenic | 50.0% | |
| CAAGTACATGTGGTACAGCG+TGG | + | chr2_2:38767753-38767772 | Msa0250320:CDS | 50.0% | |
| CGCTCTCCCAACCATACTTA+GGG | - | chr2_2:38768565-38768584 | None:intergenic | 50.0% | |
| CCTAAGTATGGTTGGGAGAG+CGG | + | chr2_2:38768563-38768582 | Msa0250320:intron | 50.0% | |
| AAGTTTGAACCCTCTGACCC+TGG | + | chr2_2:38768990-38769009 | Msa0250320:intron | 50.0% | |
| AGTTTGAACCCTCTGACCCT+GGG | + | chr2_2:38768991-38769010 | Msa0250320:intron | 50.0% | |
| GTAAGAACTGCCGTTGCTAC+TGG | + | chr2_2:38767454-38767473 | Msa0250320:CDS | 50.0% | |
| CACCTTTGGTCCAGTAGCAA+CGG | - | chr2_2:38767467-38767486 | None:intergenic | 50.0% | |
| GTTACGAAGGACACCACCTT+TGG | - | chr2_2:38767481-38767500 | None:intergenic | 50.0% | |
| CAAGTACATGTGGTACAGCG+TGG | + | chr2_2:38767753-38767772 | Msa0250320:CDS | 50.0% | |
| CGCTCTCCCAACCATACTTA+GGG | - | chr2_2:38768565-38768584 | None:intergenic | 50.0% | |
| CCTAAGTATGGTTGGGAGAG+CGG | + | chr2_2:38768563-38768582 | Msa0250320:intron | 50.0% | |
| AAGTTTGAACCCTCTGACCC+TGG | + | chr2_2:38768990-38769009 | Msa0250320:intron | 50.0% | |
| AGTTTGAACCCTCTGACCCT+GGG | + | chr2_2:38768991-38769010 | Msa0250320:intron | 50.0% | |
| TGCCGTTGCTACTGGACCAA+AGG | + | chr2_2:38767462-38767481 | Msa0250320:CDS | 55.0% | |
| CGTTGCTACTGGACCAAAGG+TGG | + | chr2_2:38767465-38767484 | Msa0250320:CDS | 55.0% | |
| TTTACGGGAACAACCGCCGA+CGG | - | chr2_2:38767508-38767527 | None:intergenic | 55.0% | |
| CGGAGCCACGTAACATTGAG+AGG | + | chr2_2:38767786-38767805 | Msa0250320:intron | 55.0% | |
| GCGGCTCAAACCGAGAACAA+GGG | - | chr2_2:38768195-38768214 | None:intergenic | 55.0% | |
| AGCGGCTCAAACCGAGAACA+AGG | - | chr2_2:38768196-38768215 | None:intergenic | 55.0% | |
| AGGGTCGCCCTAAGTATGGT+TGG | + | chr2_2:38768555-38768574 | Msa0250320:intron | 55.0% | |
| GGGTCGCCCTAAGTATGGTT+GGG | + | chr2_2:38768556-38768575 | Msa0250320:intron | 55.0% | |
| CCGCTCTCCCAACCATACTT+AGG | - | chr2_2:38768566-38768585 | None:intergenic | 55.0% | |
| ! | GGATCGTTGGATTGGGAAGG+TGG | + | chr2_2:38769078-38769097 | Msa0250320:CDS | 55.0% |
| TGCCGTTGCTACTGGACCAA+AGG | + | chr2_2:38767462-38767481 | Msa0250320:CDS | 55.0% | |
| CGTTGCTACTGGACCAAAGG+TGG | + | chr2_2:38767465-38767484 | Msa0250320:CDS | 55.0% | |
| TTTACGGGAACAACCGCCGA+CGG | - | chr2_2:38767508-38767527 | None:intergenic | 55.0% | |
| CGGAGCCACGTAACATTGAG+AGG | + | chr2_2:38767786-38767805 | Msa0250320:intron | 55.0% | |
| GCGGCTCAAACCGAGAACAA+GGG | - | chr2_2:38768195-38768214 | None:intergenic | 55.0% | |
| AGCGGCTCAAACCGAGAACA+AGG | - | chr2_2:38768196-38768215 | None:intergenic | 55.0% | |
| AGGGTCGCCCTAAGTATGGT+TGG | + | chr2_2:38768555-38768574 | Msa0250320:intron | 55.0% | |
| GGGTCGCCCTAAGTATGGTT+GGG | + | chr2_2:38768556-38768575 | Msa0250320:intron | 55.0% | |
| CCGCTCTCCCAACCATACTT+AGG | - | chr2_2:38768566-38768585 | None:intergenic | 55.0% | |
| ! | GGATCGTTGGATTGGGAAGG+TGG | + | chr2_2:38769078-38769097 | Msa0250320:CDS | 55.0% |
| GTCCTTCGTAACGTCCCCGT+CGG | + | chr2_2:38767489-38767508 | Msa0250320:CDS | 60.0% | |
| TTACGGGAACAACCGCCGAC+GGG | - | chr2_2:38767507-38767526 | None:intergenic | 60.0% | |
| GGTTGCTGCTGAAGCGGTGA+TGG | - | chr2_2:38767562-38767581 | None:intergenic | 60.0% | |
| TGGCGTGGTTGCTGCTGAAG+CGG | - | chr2_2:38767568-38767587 | None:intergenic | 60.0% | |
| CACGCCAACACCGCTTCAAC+CGG | + | chr2_2:38767581-38767600 | Msa0250320:CDS | 60.0% | |
| GCTTCCGGTTGAAGCGGTGT+TGG | - | chr2_2:38767588-38767607 | None:intergenic | 60.0% | |
| TGGTACAGCGTGGAGACCAG+TGG | + | chr2_2:38767763-38767782 | Msa0250320:intron | 60.0% | |
| TACAGCGTGGAGACCAGTGG+CGG | + | chr2_2:38767766-38767785 | Msa0250320:intron | 60.0% | |
| ATGTTACGTGGCTCCGCCAC+TGG | - | chr2_2:38767782-38767801 | None:intergenic | 60.0% | |
| TGGCAGGGTCGCCCTAAGTA+TGG | + | chr2_2:38768551-38768570 | Msa0250320:intron | 60.0% | |
| CATCACCGAGTCTCCACCAG+CGG | - | chr2_2:38769028-38769047 | None:intergenic | 60.0% | |
| GTCCTTCGTAACGTCCCCGT+CGG | + | chr2_2:38767489-38767508 | Msa0250320:CDS | 60.0% | |
| TTACGGGAACAACCGCCGAC+GGG | - | chr2_2:38767507-38767526 | None:intergenic | 60.0% | |
| GGTTGCTGCTGAAGCGGTGA+TGG | - | chr2_2:38767562-38767581 | None:intergenic | 60.0% | |
| TGGCGTGGTTGCTGCTGAAG+CGG | - | chr2_2:38767568-38767587 | None:intergenic | 60.0% | |
| CACGCCAACACCGCTTCAAC+CGG | + | chr2_2:38767581-38767600 | Msa0250320:CDS | 60.0% | |
| GCTTCCGGTTGAAGCGGTGT+TGG | - | chr2_2:38767588-38767607 | None:intergenic | 60.0% | |
| TGGTACAGCGTGGAGACCAG+TGG | + | chr2_2:38767763-38767782 | Msa0250320:intron | 60.0% | |
| TACAGCGTGGAGACCAGTGG+CGG | + | chr2_2:38767766-38767785 | Msa0250320:intron | 60.0% | |
| ATGTTACGTGGCTCCGCCAC+TGG | - | chr2_2:38767782-38767801 | None:intergenic | 60.0% | |
| TGGCAGGGTCGCCCTAAGTA+TGG | + | chr2_2:38768551-38768570 | Msa0250320:intron | 60.0% | |
| CATCACCGAGTCTCCACCAG+CGG | - | chr2_2:38769028-38769047 | None:intergenic | 60.0% | |
| CTTCGTAACGTCCCCGTCGG+CGG | + | chr2_2:38767492-38767511 | Msa0250320:CDS | 65.0% | |
| TACGGGAACAACCGCCGACG+GGG | - | chr2_2:38767506-38767525 | None:intergenic | 65.0% | |
| !! | CGGTTGAAGCGGTGTTGGCG+TGG | - | chr2_2:38767583-38767602 | None:intergenic | 65.0% |
| AACCCTCTGACCCTGGGTCC+TGG | + | chr2_2:38768997-38769016 | Msa0250320:CDS | 65.0% | |
| TGCCAGGACCCAGGGTCAGA+GGG | - | chr2_2:38769002-38769021 | None:intergenic | 65.0% | |
| TTGCCAGGACCCAGGGTCAG+AGG | - | chr2_2:38769003-38769022 | None:intergenic | 65.0% | |
| CAACGCCGCTGGTGGAGACT+CGG | + | chr2_2:38769020-38769039 | Msa0250320:CDS | 65.0% | |
| CTTCGTAACGTCCCCGTCGG+CGG | + | chr2_2:38767492-38767511 | Msa0250320:CDS | 65.0% | |
| TACGGGAACAACCGCCGACG+GGG | - | chr2_2:38767506-38767525 | None:intergenic | 65.0% | |
| !! | CGGTTGAAGCGGTGTTGGCG+TGG | - | chr2_2:38767583-38767602 | None:intergenic | 65.0% |
| AACCCTCTGACCCTGGGTCC+TGG | + | chr2_2:38768997-38769016 | Msa0250320:CDS | 65.0% | |
| TGCCAGGACCCAGGGTCAGA+GGG | - | chr2_2:38769002-38769021 | None:intergenic | 65.0% | |
| TTGCCAGGACCCAGGGTCAG+AGG | - | chr2_2:38769003-38769022 | None:intergenic | 65.0% | |
| CAACGCCGCTGGTGGAGACT+CGG | + | chr2_2:38769020-38769039 | Msa0250320:CDS | 65.0% | |
| CGCCGACGGGGACGTTACGA+AGG | - | chr2_2:38767494-38767513 | None:intergenic | 70.0% | |
| AGCGGCGTTGCCAGGACCCA+GGG | - | chr2_2:38769010-38769029 | None:intergenic | 70.0% | |
| TCTCCACCAGCGGCGTTGCC+AGG | - | chr2_2:38769018-38769037 | None:intergenic | 70.0% | |
| CGCCGACGGGGACGTTACGA+AGG | - | chr2_2:38767494-38767513 | None:intergenic | 70.0% | |
| AGCGGCGTTGCCAGGACCCA+GGG | - | chr2_2:38769010-38769029 | None:intergenic | 70.0% | |
| TCTCCACCAGCGGCGTTGCC+AGG | - | chr2_2:38769018-38769037 | None:intergenic | 70.0% | |
| CAGCGGCGTTGCCAGGACCC+AGG | - | chr2_2:38769011-38769030 | None:intergenic | 75.0% | |
| CTGGGTCCTGGCAACGCCGC+TGG | + | chr2_2:38769009-38769028 | Msa0250320:CDS | 75.0% | |
| GGTCCTGGCAACGCCGCTGG+TGG | + | chr2_2:38769012-38769031 | Msa0250320:CDS | 75.0% | |
| CAGCGGCGTTGCCAGGACCC+AGG | - | chr2_2:38769011-38769030 | None:intergenic | 75.0% | |
| CTGGGTCCTGGCAACGCCGC+TGG | + | chr2_2:38769009-38769028 | Msa0250320:CDS | 75.0% | |
| GGTCCTGGCAACGCCGCTGG+TGG | + | chr2_2:38769012-38769031 | Msa0250320:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 38767285 | 38769191 | 38767285 | ID=Msa0250320;Name=Msa0250320 |
| chr2_2 | mRNA | 38767285 | 38769191 | 38767285 | ID=Msa0250320-mRNA-1;Parent=Msa0250320;Name=Msa0250320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|231 |
| chr2_2 | exon | 38767285 | 38767781 | 38767285 | ID=Msa0250320-mRNA-1:exon:12082;Parent=Msa0250320-mRNA-1 |
| chr2_2 | exon | 38768993 | 38769191 | 38768993 | ID=Msa0250320-mRNA-1:exon:12083;Parent=Msa0250320-mRNA-1 |
| chr2_2 | CDS | 38767285 | 38767781 | 38767285 | ID=Msa0250320-mRNA-1:cds;Parent=Msa0250320-mRNA-1 |
| chr2_2 | CDS | 38768993 | 38769191 | 38768993 | ID=Msa0250320-mRNA-1:cds;Parent=Msa0250320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
