AlfalfaGEDB | Msa0250790

M. sativa cultivar zhongmu-4 / Msa0250790

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250790	XP_003610737.1	94.737	190	10	0	1	190	1	190	4.76e-128	368

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250790	sp\|P05332\|YP20_BACLI	30.588	170	107	3	21	184	8	172	1.67e-15	73.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250790	G7K3P2	94.737	190	10	0	1	190	1	190	2.27e-128	368

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0250790	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250790	MtrunA17_Chr5g0394621	94.737	190	10	0	1	190	1	190	4.38e-132	368
Msa0250790	MtrunA17_Chr5g0394631	78.333	180	39	0	1	180	1	180	1.26e-97	288
Msa0250790	MtrunA17_Chr5g0394631	71.649	194	45	5	1	190	214	401	4.92e-86	259
Msa0250790	MtrunA17_Chr1g0204951	63.021	192	67	2	1	190	1	190	1.43e-83	245
Msa0250790	MtrunA17_Chr1g0204971	59.375	192	74	2	1	190	1	190	1.25e-78	233
Msa0250790	MtrunA17_Chr7g0273661	41.401	157	89	1	16	172	3	156	5.79e-42	138
Msa0250790	MtrunA17_Chr7g0223361	39.766	171	99	2	17	187	4	170	1.27e-36	125
Msa0250790	MtrunA17_Chr7g0223351	40.476	168	95	3	20	187	7	169	2.83e-36	124

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250790	AT2G32030.1	48.925	186	80	4	3	187	14	185	6.29e-60	185
Msa0250790	AT2G32020.1	47.541	183	81	3	6	187	12	180	4.32e-53	168
Msa0250790	AT3G22560.1	38.150	173	102	2	17	187	3	172	6.25e-36	124

Showing 1 to 3 of 3 entries

Previous1Next

Find 45 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGGTCGGAGTGTGATTT+GGG	0.320072	2_2:-39897118	None:intergenic
AAGTGGCCAAGTTCTGCTCT+TGG	0.474319	2_2:+39897187	Msa0250790:CDS
ACCTTGATGATCTCATGGTA+TGG	0.538119	2_2:+39897151	Msa0250790:CDS
AGGAAATATTTGTTCATGAA+AGG	0.480337	2_2:+39897555	Msa0250790:CDS
AGGAACAAATGTGCAAAACT+TGG	0.472702	2_2:+39897351	Msa0250790:CDS
AGTGGCCAAGTTCTGCTCTT+GGG	0.462852	2_2:+39897188	Msa0250790:CDS
ATATAGCTACTAAGTTTCTA+TGG	0.387531	2_2:+39897253	Msa0250790:CDS
ATCAAGGTCAGAAAGATTAA+GGG	0.492658	2_2:-39897136	None:intergenic
ATGTTATAGGCTCTAAATAT+TGG	0.285284	2_2:+39897376	Msa0250790:CDS
ATTCTCTCTTCTTTGTCAGG+TGG	0.506895	2_2:-39897087	None:intergenic

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGGTCAGAAAGATTAA+GGG	-	chr2_2:39897139-39897158	None:intergenic	30.0%
TCAATTCTCTCTTCTTTGTC+AGG	-	chr2_2:39897093-39897112	None:intergenic	35.0%
TCAAGGTCAGAAAGATTAAG+GGG	-	chr2_2:39897138-39897157	None:intergenic	35.0%
CATCAAGGTCAGAAAGATTA+AGG	-	chr2_2:39897140-39897159	None:intergenic	35.0%
ATGGACAACTGATGAAAAAG+TGG	+	chr2_2:39897170-39897189	Msa0250790:CDS	35.0%
TTGTTCCTTGATTTATCACC+AGG	-	chr2_2:39897339-39897358	None:intergenic	35.0%
AGGAACAAATGTGCAAAACT+TGG	+	chr2_2:39897351-39897370	Msa0250790:CDS	35.0%
GCAAAACTTGGCTATGTTAT+AGG	+	chr2_2:39897363-39897382	Msa0250790:CDS	35.0%
CTCTAAATATTGGGGTAAAG+GGG	+	chr2_2:39897386-39897405	Msa0250790:CDS	35.0%
TGTTGTGAAACAAGTGGTTA+AGG	+	chr2_2:39897419-39897438	Msa0250790:CDS	35.0%

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	39897060	39897632	39897060	ID=Msa0250790;Name=Msa0250790
chr2_2	mRNA	39897060	39897632	39897060	ID=Msa0250790-mRNA-1;Parent=Msa0250790;Name=Msa0250790-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|190
chr2_2	exon	39897060	39897632	39897060	ID=Msa0250790-mRNA-1:exon:12348;Parent=Msa0250790-mRNA-1
chr2_2	CDS	39897060	39897632	39897060	ID=Msa0250790-mRNA-1:cds;Parent=Msa0250790-mRNA-1

Gene Sequence

>Msa0250790

ATGGAGATAACTTCTATTTCTTCCAAACCACCTGACAAAGAAGAGAGAATTGATCTAACCCAAATCACACTCCGACCCCTTAATCTTTCTGACCTTGATGATCTCATGGTATGGACAACTGATGAAAAAGTGGCCAAGTTCTGCTCTTGGGAACTCTACGCCAGCAAGGATGATGGCATCAACTTCATTGAAAATATAGCTACTAAGTTTCTATGGTGCAAAGCAATATGCATCAATGATCGTGCAATTGGGTGTGTTTCTCTATCCTCAAGTACACCTGGTGATAAATCAAGGAACAAATGTGCAAAACTTGGCTATGTTATAGGCTCTAAATATTGGGGTAAAGGGGTTGCCACGTGTGTTGTGAAACAAGTGGTTAAGGTTGCATTCTGTGAGTTGTCTTACTTGGAAAGGCTTGAAGCTTTAGTTGATGTGGAAAATGTTGGGTCTCAAAGAGTTTTGGAGAAAGCTGGTTTCCAAAAAGAGGGAGTTCTAAGGAAATATTTGTTCATGAAAGGAAAAAGTAGAGATATGATCATCTCCAGTGTTCTCTTTACTGATCTCCAACTATAA

Protein sequence

>Msa0250790

MEITSISSKPPDKEERIDLTQITLRPLNLSDLDDLMVWTTDEKVAKFCSWELYASKDDGINFIENIATKFLWCKAICINDRAIGCVSLSSSTPGDKSRNKCAKLGYVIGSKYWGKGVATCVVKQVVKVAFCELSYLERLEALVDVENVGSQRVLEKAGFQKEGVLRKYLFMKGKSRDMIISSVLFTDLQL*