AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0252290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252290 MtrunA17_Chr4g0029241 96.721 122 4 0 2 123 171 292 4.60e-84 251
Msa0252290 MtrunA17_Chr2g0326531 84.426 122 19 0 2 123 173 294 1.67e-71 219
Msa0252290 MtrunA17_Chr8g0346071 32.203 118 78 1 6 123 69 184 3.09e-20 84.7
Msa0252290 MtrunA17_Chr2g0304111 32.540 126 79 3 1 123 70 192 3.53e-20 84.3
Msa0252290 MtrunA17_Chr3g0107011 34.884 129 69 6 2 123 62 182 5.73e-20 84.0
Msa0252290 MtrunA17_Chr8g0346081 32.203 118 78 1 6 123 69 184 6.46e-20 83.6
Msa0252290 MtrunA17_Chr5g0428031 36.066 122 76 1 2 123 57 176 6.46e-20 83.6
Msa0252290 MtrunA17_Chr8g0379091 32.258 124 79 3 2 123 74 194 2.04e-19 82.4
Msa0252290 MtrunA17_Chr4g0063881 31.967 122 81 1 2 123 59 178 3.25e-19 81.6
Msa0252290 MtrunA17_Chr2g0284011 32.258 124 79 3 2 123 60 180 3.47e-18 79.0
Msa0252290 MtrunA17_Chr4g0013131 30.645 124 81 3 2 123 60 180 4.07e-18 78.6
Msa0252290 MtrunA17_Chr2g0284031 31.452 124 80 3 2 123 79 199 4.32e-18 78.6
Msa0252290 MtrunA17_Chr6g0468751 32.787 122 79 2 2 123 67 185 1.42e-17 77.4
Msa0252290 MtrunA17_Chr6g0453681 32.787 122 79 2 2 123 67 185 1.50e-17 77.0
Msa0252290 MtrunA17_Chr1g0150321 31.452 124 80 3 2 123 61 181 1.62e-17 77.0
Msa0252290 MtrunA17_Chr5g0441011 34.109 129 71 4 2 123 61 182 1.99e-17 76.6
Msa0252290 MtrunA17_Chr5g0396361 30.841 107 74 0 2 108 187 293 2.85e-17 76.3
Msa0252290 MtrunA17_Chr3g0132671 32.773 119 77 2 5 123 100 215 3.76e-17 75.9
Msa0252290 MtrunA17_Chr7g0244521 29.839 124 82 3 2 123 60 180 4.11e-17 75.9
Msa0252290 MtrunA17_Chr1g0205421 33.065 124 78 3 2 123 60 180 6.55e-17 75.1
Msa0252290 MtrunA17_Chr5g0432491 32.258 124 80 2 2 123 71 192 8.14e-17 75.1
Msa0252290 MtrunA17_Chr5g0432471 28.906 128 78 4 2 123 60 180 1.45e-16 74.3
Msa0252290 MtrunA17_Chr3g0114511 33.333 123 69 4 6 123 84 198 2.48e-16 73.6
Msa0252290 MtrunA17_Chr2g0302431 32.800 125 78 3 2 123 68 189 3.91e-16 73.2
Msa0252290 MtrunA17_Chr1g0166101 34.167 120 75 3 6 123 76 193 5.47e-16 72.8
Msa0252290 MtrunA17_Chr4g0001331 30.645 124 81 3 2 123 68 188 6.58e-16 72.4
Msa0252290 MtrunA17_Chr3g0125381 33.913 115 74 1 9 123 7 119 9.84e-16 70.1
Msa0252290 MtrunA17_Chr1g0188031 33.333 120 76 3 6 123 73 190 1.33e-15 71.6
Msa0252290 MtrunA17_Chr4g0074111 30.952 126 78 4 2 123 66 186 2.20e-15 70.9
Msa0252290 MtrunA17_Chr3g0099951 37.255 102 62 1 5 106 66 165 2.29e-15 70.9
Msa0252290 MtrunA17_Chr4g0008561 30.400 125 81 3 2 123 66 187 2.85e-15 70.9
Msa0252290 MtrunA17_Chr3g0107051 29.600 125 83 3 1 123 68 189 3.47e-15 70.5
Msa0252290 MtrunA17_Chr2g0333821 29.839 124 82 3 2 123 62 182 3.47e-15 70.5
Msa0252290 MtrunA17_Chr4g0040141 33.000 100 67 0 2 101 176 275 3.94e-15 70.5
Msa0252290 MtrunA17_Chr5g0402601 33.594 128 71 5 2 123 422 541 5.08e-15 70.1
Msa0252290 MtrunA17_Chr6g0453671 29.661 118 80 2 6 123 71 185 8.19e-15 69.3
Msa0252290 MtrunA17_Chr1g0170551 30.328 122 82 2 2 123 54 172 8.84e-15 69.3
Msa0252290 MtrunA17_Chr8g0345801 32.000 125 79 3 2 123 62 183 1.06e-14 68.2
Msa0252290 MtrunA17_Chr7g0272841 33.871 124 78 2 2 123 121 242 1.40e-14 68.6
Msa0252290 MtrunA17_Chr3g0129721 31.250 128 70 5 5 123 75 193 1.53e-14 67.8
Msa0252290 MtrunA17_Chr3g0130151 33.607 122 78 2 2 123 294 412 1.87e-14 68.6
Msa0252290 MtrunA17_Chr4g0069301 30.833 120 79 2 6 123 78 195 4.00e-14 67.4
Msa0252290 MtrunA17_Chr8g0386981 36.893 103 59 2 2 102 458 556 4.74e-14 67.4
Msa0252290 MtrunA17_Chr3g0131861 29.000 100 71 0 2 101 144 243 7.33e-14 66.6
Msa0252290 MtrunA17_Chr5g0424501 33.065 124 74 4 2 123 241 357 1.01e-13 66.2
Msa0252290 MtrunA17_Chr7g0218071 31.000 100 69 0 2 101 167 266 1.20e-13 66.2
Msa0252290 MtrunA17_Chr4g0041201 32.000 125 80 2 2 123 592 714 2.35e-13 65.1
Msa0252290 MtrunA17_Chr1g0197721 33.019 106 69 1 1 106 98 201 2.97e-13 64.7
Msa0252290 MtrunA17_Chr2g0324461 31.000 100 69 0 2 101 188 287 3.51e-13 64.7
Msa0252290 MtrunA17_Chr2g0325851 34.400 125 77 2 2 123 602 724 5.36e-13 64.3
Msa0252290 MtrunA17_Chr3g0091421 31.034 116 76 3 9 123 67 179 5.53e-13 63.2
Msa0252290 MtrunA17_Chr5g0424581 33.065 124 74 4 2 123 174 290 5.95e-13 63.9
Msa0252290 MtrunA17_Chr8g0353621 30.435 115 75 2 9 123 65 174 6.66e-13 63.2
Msa0252290 MtrunA17_Chr4g0051261 33.654 104 65 3 2 103 51 152 7.16e-13 63.2
Msa0252290 MtrunA17_Chr6g0453711 29.907 107 75 0 2 108 157 263 8.21e-13 63.5
Msa0252290 MtrunA17_Chr8g0384301 33.058 121 74 3 5 123 352 467 9.65e-13 63.5
Msa0252290 MtrunA17_Chr2g0276831 31.092 119 75 2 12 123 66 184 9.65e-13 63.2
Msa0252290 MtrunA17_Chr5g0424651 33.065 124 74 4 2 123 370 486 1.04e-12 63.5
Msa0252290 MtrunA17_Chr1g0205931 30.645 124 82 2 2 123 108 229 1.16e-12 63.2
Msa0252290 MtrunA17_Chr1g0202831 33.065 124 76 3 2 123 461 579 1.26e-12 63.2
Msa0252290 MtrunA17_Chr2g0299781 37.895 95 57 1 14 108 173 265 1.29e-12 63.2
Msa0252290 MtrunA17_Chr4g0061141 30.000 100 70 0 2 101 152 251 1.39e-12 63.2
Msa0252290 MtrunA17_Chr2g0317501 30.000 100 70 0 2 101 181 280 1.51e-12 62.8
Msa0252290 MtrunA17_Chr8g0351491 32.759 116 71 3 9 123 71 180 1.59e-12 62.4
Msa0252290 MtrunA17_Chr5g0428981 40.789 76 45 0 27 102 834 909 1.65e-12 62.8
Msa0252290 MtrunA17_Chr4g0018201 39.474 76 46 0 27 102 830 905 2.48e-12 62.4
Msa0252290 MtrunA17_Chr4g0068411 32.000 125 80 3 2 123 505 627 2.56e-12 62.4
Msa0252290 MtrunA17_Chr3g0091281 31.034 116 76 3 9 123 67 179 2.60e-12 61.2
Msa0252290 MtrunA17_Chr8g0387401 30.357 112 74 2 2 110 99 209 2.61e-12 62.0
Msa0252290 MtrunA17_Chr8g0385971 28.000 100 72 0 2 101 137 236 2.75e-12 62.0
Msa0252290 MtrunA17_Chr2g0286421 28.972 107 76 0 2 108 149 255 2.79e-12 62.0
Msa0252290 MtrunA17_Chr1g0179331 35.433 127 75 3 2 123 600 724 2.82e-12 62.0
Msa0252290 MtrunA17_Chr6g0478601 40.789 76 45 0 27 102 182 257 2.84e-12 62.0
Msa0252290 MtrunA17_Chr8g0383451 30.392 102 71 0 2 103 45 146 4.02e-12 61.6
Msa0252290 MtrunA17_Chr4g0038091 29.752 121 81 2 5 123 70 188 9.25e-12 60.8
Msa0252290 MtrunA17_Chr4g0051191 30.328 122 80 3 2 123 213 329 9.77e-12 60.5
Msa0252290 MtrunA17_Chr3g0129771 30.400 125 82 3 2 123 82 204 1.01e-11 60.5
Msa0252290 MtrunA17_Chr3g0093571 27.049 122 75 2 2 109 72 193 1.09e-11 60.5
Msa0252290 MtrunA17_Chr7g0273601 28.000 100 72 0 2 101 154 253 1.16e-11 60.5
Msa0252290 MtrunA17_Chr3g0133541 32.800 125 76 4 2 123 357 476 1.25e-11 60.5
Msa0252290 MtrunA17_Chr8g0374571 32.520 123 70 4 7 123 72 187 1.28e-11 60.1
Msa0252290 MtrunA17_Chr7g0274941 28.333 120 83 2 5 123 67 184 1.44e-11 59.7
Msa0252290 MtrunA17_Chr3g0140631 33.000 100 65 1 2 101 85 182 1.69e-11 59.7
Msa0252290 MtrunA17_Chr4g0038501 28.926 121 82 2 5 123 70 188 1.74e-11 60.1
Msa0252290 MtrunA17_Chr8g0348841 29.915 117 68 4 2 108 487 599 2.62e-11 59.3
Msa0252290 MtrunA17_Chr4g0066691 26.733 101 74 0 2 102 151 251 2.68e-11 59.3
Msa0252290 MtrunA17_Chr4g0047191 29.134 127 79 5 2 123 95 215 2.81e-11 59.3
Msa0252290 MtrunA17_Chr4g0047211 29.134 127 79 5 2 123 90 210 2.87e-11 58.9
Msa0252290 MtrunA17_Chr7g0248461 28.571 112 76 2 2 110 85 195 2.99e-11 58.9
Msa0252290 MtrunA17_Chr7g0244561 31.452 124 81 2 2 123 65 186 3.08e-11 58.9
Msa0252290 MtrunA17_Chr2g0293491 31.731 104 67 3 2 103 51 152 3.10e-11 58.9
Msa0252290 MtrunA17_Chr5g0424531 31.148 122 79 3 2 123 65 181 3.22e-11 58.5
Msa0252290 MtrunA17_Chr3g0093391 26.230 122 76 2 2 109 70 191 3.45e-11 58.9
Msa0252290 MtrunA17_Chr3g0091311 29.167 120 73 4 9 123 67 179 5.59e-11 57.8
Msa0252290 MtrunA17_Chr3g0135951 36.782 87 53 1 14 100 154 238 6.72e-11 58.2
Msa0252290 MtrunA17_Chr6g0483151 31.683 101 67 1 2 102 61 159 7.05e-11 58.2
Msa0252290 MtrunA17_Chr1g0171451 33.846 130 73 5 2 123 459 583 7.31e-11 58.2
Msa0252290 MtrunA17_Chr5g0397261 28.571 112 76 2 2 110 88 198 7.55e-11 57.8
Msa0252290 MtrunA17_Chr2g0288841 32.231 121 75 3 5 123 51 166 7.57e-11 58.2
Msa0252290 MtrunA17_Chr1g0191221 28.448 116 79 1 2 117 169 280 9.43e-11 57.8
Msa0252290 MtrunA17_Chr5g0402661 30.894 123 72 4 7 123 67 182 9.79e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252290 AT5G60550.1 76.230 122 29 0 2 123 161 282 4.52e-63 197
Msa0252290 AT3G45240.2 73.770 122 32 0 2 123 162 283 2.84e-60 190
Msa0252290 AT3G45240.1 73.770 122 32 0 2 123 162 283 2.84e-60 190
Msa0252290 AT3G45240.3 73.770 122 29 1 2 123 162 280 1.92e-58 185
Msa0252290 AT5G35410.2 34.426 122 78 1 2 123 59 178 1.85e-20 85.1
Msa0252290 AT5G35410.1 34.426 122 78 1 2 123 59 178 2.26e-20 85.5
Msa0252290 AT2G26980.2 34.884 129 70 4 2 123 62 183 3.12e-20 83.2
Msa0252290 AT4G24400.2 34.426 122 78 1 2 123 57 176 8.45e-20 83.6
Msa0252290 AT4G24400.1 34.426 122 78 1 2 123 57 176 1.10e-19 83.6
Msa0252290 AT2G26980.3 34.884 129 70 4 2 123 62 183 1.21e-19 83.2
Msa0252290 AT2G26980.1 34.884 129 70 4 2 123 62 183 1.26e-19 83.2
Msa0252290 AT2G26980.5 34.884 129 70 4 2 123 62 183 1.26e-19 83.2
Msa0252290 AT2G26980.4 34.884 129 70 4 2 123 72 193 1.34e-19 83.2
Msa0252290 AT1G01140.1 33.333 126 76 3 2 123 67 188 7.43e-19 81.3
Msa0252290 AT1G01140.2 33.333 126 76 3 2 123 67 188 7.47e-19 81.3
Msa0252290 AT1G01140.3 33.333 126 76 3 2 123 67 188 7.50e-19 81.3
Msa0252290 AT3G01090.2 34.426 122 77 2 2 123 90 208 1.25e-18 80.5
Msa0252290 AT3G01090.3 34.426 122 77 2 2 123 67 185 1.45e-18 80.5
Msa0252290 AT3G01090.1 34.426 122 77 2 2 123 67 185 1.45e-18 80.5
Msa0252290 AT5G01810.3 35.000 120 73 3 6 123 64 180 2.70e-18 79.3
Msa0252290 AT5G01810.1 35.000 120 73 3 6 123 64 180 3.05e-18 79.3
Msa0252290 AT5G01810.2 35.000 120 73 3 6 123 64 180 3.05e-18 79.3
Msa0252290 AT4G18700.1 31.452 124 80 3 2 123 74 194 3.48e-18 79.3
Msa0252290 AT5G10930.1 35.200 125 74 4 2 123 61 181 4.21e-18 79.0
Msa0252290 AT1G30270.2 31.200 125 80 3 2 123 79 200 4.75e-18 79.0
Msa0252290 AT1G30270.1 31.200 125 80 3 2 123 79 200 4.81e-18 79.0
Msa0252290 AT5G57630.2 35.593 118 72 3 6 123 64 177 1.44e-17 77.4
Msa0252290 AT5G57630.1 35.593 118 72 3 6 123 64 177 1.48e-17 77.4
Msa0252290 AT5G25110.1 30.645 124 81 3 2 123 91 211 1.56e-17 77.4
Msa0252290 AT2G30360.1 32.258 124 80 2 2 123 70 191 1.58e-17 77.4
Msa0252290 AT5G39440.1 35.294 119 74 2 5 123 70 185 1.61e-17 77.4
Msa0252290 AT5G45810.1 30.645 124 81 3 2 123 76 196 1.91e-17 77.4
Msa0252290 AT4G30960.1 33.065 124 78 2 2 123 72 192 2.15e-17 77.0
Msa0252290 AT5G21326.1 34.400 125 68 4 6 123 65 182 2.27e-17 77.0
Msa0252290 AT4G14580.1 33.613 119 75 2 7 123 75 191 2.54e-17 76.6
Msa0252290 AT3G29160.3 32.787 122 79 2 2 123 68 186 2.62e-17 76.3
Msa0252290 AT2G25090.1 31.298 131 79 2 2 123 64 192 2.75e-17 76.6
Msa0252290 AT5G45820.1 29.839 124 82 3 2 123 60 180 4.05e-17 76.3
Msa0252290 AT3G29160.1 32.787 122 79 2 2 123 68 186 4.07e-17 76.3
Msa0252290 AT3G29160.2 32.787 122 79 2 2 123 68 186 4.07e-17 76.3
Msa0252290 AT3G23000.1 33.898 118 75 2 7 123 79 194 8.46e-17 75.5
Msa0252290 AT1G29230.1 32.258 124 79 3 2 123 122 242 9.90e-17 75.1
Msa0252290 AT2G34180.1 32.258 124 79 3 2 123 105 225 1.11e-15 72.4
Msa0252290 AT1G30640.2 36.538 104 64 1 5 108 171 272 1.30e-15 72.0
Msa0252290 AT1G30640.1 36.538 104 64 1 5 108 171 272 1.30e-15 72.0
Msa0252290 AT2G37840.1 30.400 125 81 3 2 123 59 180 2.83e-15 71.2
Msa0252290 AT1G30640.3 36.538 104 64 1 5 108 78 179 3.47e-15 70.9
Msa0252290 AT5G04510.3 34.615 104 66 1 5 108 95 196 8.41e-15 69.3
Msa0252290 AT5G58380.1 29.032 124 83 3 2 123 60 180 9.06e-15 69.7
Msa0252290 AT5G04510.2 33.962 106 68 1 1 106 91 194 1.16e-14 69.3
Msa0252290 AT2G31010.1 35.200 125 76 2 2 123 564 686 1.17e-14 69.3
Msa0252290 AT2G31010.2 35.200 125 76 2 2 123 564 686 1.17e-14 69.3
Msa0252290 AT5G04510.1 33.962 106 68 1 1 106 91 194 1.24e-14 69.3
Msa0252290 AT5G21222.1 29.032 124 84 3 2 123 61 182 1.38e-14 69.3
Msa0252290 AT5G21222.2 29.032 124 84 3 2 123 61 182 1.38e-14 69.3
Msa0252290 AT5G21222.4 29.032 124 84 3 2 123 61 182 1.38e-14 69.3
Msa0252290 AT5G21222.3 29.032 124 84 3 2 123 61 182 1.38e-14 69.3
Msa0252290 AT3G10540.1 34.906 106 67 1 1 106 92 195 1.66e-14 68.9
Msa0252290 AT1G03740.2 32.000 100 68 0 2 101 260 359 1.94e-14 68.6
Msa0252290 AT1G09000.2 33.065 124 79 2 2 123 122 243 2.17e-14 68.6
Msa0252290 AT1G09000.1 33.065 124 79 2 2 123 122 243 2.19e-14 68.6
Msa0252290 AT1G03740.1 32.000 100 68 0 2 101 260 359 2.19e-14 68.6
Msa0252290 AT1G51660.1 36.066 122 72 3 2 123 125 240 2.61e-14 68.2
Msa0252290 AT1G71530.4 30.275 109 76 0 2 110 194 302 5.83e-14 67.0
Msa0252290 AT1G49180.2 34.483 116 70 3 11 123 63 175 6.36e-14 67.0
Msa0252290 AT1G49180.1 32.787 122 76 3 5 123 57 175 6.53e-14 67.0
Msa0252290 AT5G58950.1 33.846 130 69 5 2 123 258 378 7.35e-14 67.0
Msa0252290 AT2G38490.1 32.540 126 76 4 2 123 76 196 7.37e-14 67.0
Msa0252290 AT1G54960.1 32.258 124 80 2 2 123 121 242 7.49e-14 67.0
Msa0252290 AT1G54960.2 32.258 124 80 2 2 123 121 242 7.49e-14 67.0
Msa0252290 AT5G39420.1 28.037 107 77 0 2 108 152 258 8.08e-14 67.0
Msa0252290 AT1G71530.3 30.275 109 76 0 2 110 194 302 9.16e-14 66.6
Msa0252290 AT1G71530.2 30.275 109 76 0 2 110 194 302 9.33e-14 66.6
Msa0252290 AT1G71530.1 30.275 109 76 0 2 110 194 302 9.83e-14 66.6
Msa0252290 AT1G63700.1 33.065 124 76 3 2 123 450 568 1.23e-13 66.6
Msa0252290 AT1G63700.2 33.065 124 76 3 2 123 450 568 1.23e-13 66.6
Msa0252290 AT5G44290.7 29.907 107 75 0 2 108 184 290 1.43e-13 66.2
Msa0252290 AT5G44290.6 29.907 107 75 0 2 108 184 290 1.50e-13 66.2
Msa0252290 AT5G44290.2 29.907 107 75 0 2 108 184 290 1.92e-13 65.9
Msa0252290 AT5G44290.5 29.907 107 75 0 2 108 184 290 1.92e-13 65.9
Msa0252290 AT5G44290.4 29.907 107 75 0 2 108 184 290 1.92e-13 65.9
Msa0252290 AT5G44290.1 29.907 107 75 0 2 108 184 290 1.92e-13 65.9
Msa0252290 AT5G44290.3 29.907 107 75 0 2 108 184 290 1.92e-13 65.9
Msa0252290 AT1G73690.1 32.673 101 66 1 2 102 58 156 2.70e-13 65.5
Msa0252290 AT1G33770.1 28.704 108 77 0 2 109 188 295 3.34e-13 65.1
Msa0252290 AT1G53050.2 33.000 100 67 0 2 101 181 280 3.56e-13 65.1
Msa0252290 AT1G53050.1 33.000 100 67 0 2 101 181 280 3.56e-13 65.1
Msa0252290 AT1G50240.3 29.508 122 83 2 2 123 53 171 3.60e-13 65.1
Msa0252290 AT1G50240.2 29.508 122 83 2 2 123 53 171 3.60e-13 65.1
Msa0252290 AT1G45160.2 43.421 76 43 0 27 102 741 816 4.07e-13 65.1
Msa0252290 AT3G53930.1 28.800 125 83 3 2 123 67 188 4.33e-13 64.7
Msa0252290 AT3G53930.2 28.800 125 83 3 2 123 67 188 4.46e-13 64.7
Msa0252290 AT5G66850.2 32.812 128 72 5 2 123 396 515 4.53e-13 64.7
Msa0252290 AT1G45160.1 43.421 76 43 0 27 102 741 816 4.65e-13 64.7
Msa0252290 AT1G48260.1 32.800 125 70 4 6 123 63 180 5.26e-13 64.7
Msa0252290 AT5G66850.1 32.812 128 72 5 2 123 396 515 5.63e-13 64.7
Msa0252290 AT5G62310.1 40.789 76 45 0 27 102 825 900 5.74e-13 64.7
Msa0252290 AT3G61960.1 28.800 125 83 3 2 123 57 178 7.14e-13 64.3
Msa0252290 AT1G30270.3 32.990 97 61 2 30 123 8 103 7.85e-13 63.9
Msa0252290 AT3G61960.2 28.800 125 83 3 2 123 57 178 8.26e-13 63.9
Msa0252290 AT5G07070.1 29.032 124 83 3 2 123 60 180 1.35e-12 63.5
Msa0252290 AT3G17850.1 39.474 76 46 0 27 102 953 1028 1.58e-12 63.2
Msa0252290 AT5G57565.5 32.258 93 61 2 31 123 34 124 1.71e-12 60.5
Msa0252290 AT5G57565.1 32.258 93 61 2 31 123 34 124 1.71e-12 60.5
Msa0252290 AT3G21220.2 34.426 122 74 3 2 123 116 231 1.87e-12 62.8
Msa0252290 AT3G21220.1 34.426 122 74 3 2 123 116 231 1.87e-12 62.8
Msa0252290 AT4G10010.2 28.704 108 77 0 2 109 203 310 2.38e-12 62.8
Msa0252290 AT4G10010.1 28.704 108 77 0 2 109 23 130 2.99e-12 62.4
Msa0252290 AT2G19400.1 40.230 87 50 1 14 100 165 249 3.02e-12 62.4
Msa0252290 AT5G57565.4 32.258 93 61 2 31 123 34 124 3.21e-12 60.5
Msa0252290 AT5G01820.1 32.258 124 79 2 2 123 70 190 3.48e-12 62.4
Msa0252290 AT5G18700.1 30.469 128 78 3 1 123 45 166 4.35e-12 62.0
Msa0252290 AT3G17510.1 32.800 125 70 4 6 123 72 189 4.71e-12 62.0
Msa0252290 AT1G18670.2 28.155 103 74 0 2 104 178 280 4.71e-12 62.0
Msa0252290 AT1G18670.1 28.155 103 74 0 2 104 178 280 4.75e-12 62.0
Msa0252290 AT1G18670.3 28.155 103 74 0 2 104 178 280 4.75e-12 62.0
Msa0252290 AT4G32830.1 34.000 100 64 1 2 101 79 176 5.09e-12 61.2
Msa0252290 AT3G05050.3 27.000 100 73 0 2 101 185 284 5.22e-12 61.6
Msa0252290 AT3G05050.2 27.000 100 73 0 2 101 185 284 5.22e-12 61.6
Msa0252290 AT3G05050.1 27.000 100 73 0 2 101 185 284 5.22e-12 61.6
Msa0252290 AT1G48490.4 39.474 76 46 0 27 102 900 975 5.46e-12 61.6
Msa0252290 AT1G48490.3 39.474 76 46 0 27 102 899 974 5.51e-12 61.6
Msa0252290 AT1G48490.2 39.474 76 46 0 27 102 899 974 5.51e-12 61.6
Msa0252290 AT1G48490.1 39.474 76 46 0 27 102 899 974 5.51e-12 61.6
Msa0252290 AT5G03730.2 33.858 127 77 3 2 123 596 720 6.89e-12 61.6
Msa0252290 AT5G03730.1 33.858 127 77 3 2 123 596 720 6.89e-12 61.6
Msa0252290 AT2G23030.1 32.520 123 70 4 7 123 53 168 8.08e-12 60.8
Msa0252290 AT1G54610.1 28.000 100 72 0 2 101 165 264 8.20e-12 61.2
Msa0252290 AT1G54610.3 28.000 100 72 0 2 101 165 264 8.20e-12 61.2
Msa0252290 AT1G54610.2 28.000 100 72 0 2 101 165 264 8.20e-12 61.2
Msa0252290 AT2G25880.4 34.000 100 64 1 2 101 86 183 8.58e-12 60.8
Msa0252290 AT2G25880.1 34.000 100 64 1 2 101 73 170 8.99e-12 60.5
Msa0252290 AT2G25880.3 34.000 100 64 1 2 101 134 231 1.02e-11 60.8
Msa0252290 AT1G01560.4 28.800 125 84 3 2 123 87 209 1.14e-11 60.5
Msa0252290 AT1G01560.1 28.800 125 84 3 2 123 87 209 1.14e-11 60.5
Msa0252290 AT5G64960.1 26.446 121 75 1 2 108 73 193 1.25e-11 60.5
Msa0252290 AT5G10270.1 26.446 121 75 1 2 108 73 193 1.40e-11 60.5
Msa0252290 AT4G33080.1 37.931 87 52 1 14 100 154 238 1.49e-11 60.5
Msa0252290 AT3G07980.2 28.926 121 82 2 5 123 70 188 1.56e-11 60.5
Msa0252290 AT5G64960.2 26.446 121 75 1 2 108 20 140 1.56e-11 60.5
Msa0252290 AT4G33080.2 37.931 87 52 1 14 100 154 238 1.62e-11 60.5
Msa0252290 AT2G17700.1 29.600 125 82 4 1 123 330 450 1.72e-11 60.1
Msa0252290 AT1G01560.3 28.800 125 84 3 2 123 87 209 1.76e-11 60.1
Msa0252290 AT1G01560.2 28.800 125 84 3 2 123 87 209 1.85e-11 60.1
Msa0252290 AT4G08500.1 31.148 122 79 3 2 123 382 498 1.92e-11 60.1
Msa0252290 AT5G57630.3 32.967 91 59 2 33 123 1 89 2.08e-11 59.7
Msa0252290 AT3G07980.1 28.926 121 82 2 5 123 70 188 3.08e-11 59.7
Msa0252290 AT2G20470.3 33.684 95 59 1 27 117 195 289 3.25e-11 59.3
Msa0252290 AT2G20470.2 33.684 95 59 1 27 117 195 289 3.31e-11 59.3
Msa0252290 AT2G20470.1 33.684 95 59 1 27 117 195 289 3.31e-11 59.3
Msa0252290 AT3G58640.1 32.000 125 80 2 2 123 598 720 3.34e-11 59.3
Msa0252290 AT3G58640.2 32.000 125 80 2 2 123 598 720 3.34e-11 59.3
Msa0252290 AT2G45490.2 31.092 119 77 2 5 123 73 186 3.41e-11 58.9
Msa0252290 AT3G13530.1 28.926 121 82 2 5 123 70 188 3.43e-11 59.7
Msa0252290 AT1G74330.3 29.000 100 71 0 2 101 168 267 3.81e-11 59.3
Msa0252290 AT1G74330.2 29.000 100 71 0 2 101 168 267 3.84e-11 59.3
Msa0252290 AT1G74330.1 29.000 100 71 0 2 101 168 267 3.84e-11 59.3
Msa0252290 AT1G53570.6 31.967 122 80 2 2 123 264 382 4.59e-11 58.9
Msa0252290 AT1G53570.7 31.967 122 80 2 2 123 264 382 4.59e-11 58.9
Msa0252290 AT1G53570.4 31.967 122 80 2 2 123 264 382 4.68e-11 58.9
Msa0252290 AT1G53570.2 31.967 122 80 2 2 123 264 382 4.68e-11 58.9
Msa0252290 AT1G53570.3 31.967 122 80 2 2 123 264 382 4.68e-11 58.9
Msa0252290 AT1G53570.1 31.967 122 80 2 2 123 264 382 4.68e-11 58.9
Msa0252290 AT1G18350.1 30.252 119 80 1 5 123 94 209 5.12e-11 58.5
Msa0252290 AT2G45490.1 31.092 119 77 2 5 123 73 186 5.19e-11 58.5
Msa0252290 AT5G50860.2 26.000 100 74 0 2 101 161 260 5.69e-11 58.9
Msa0252290 AT5G50860.1 26.000 100 74 0 2 101 161 260 5.82e-11 58.9
Msa0252290 AT4G22940.1 28.182 110 78 1 2 110 150 259 6.88e-11 58.5
Msa0252290 AT2G24360.1 31.200 125 77 4 3 123 180 299 7.13e-11 58.5
Msa0252290 AT3G59790.1 31.858 113 71 3 2 110 107 217 7.39e-11 58.5
Msa0252290 AT4G22940.2 28.182 110 78 1 2 110 150 259 7.82e-11 58.5
Msa0252290 AT1G66750.1 29.907 107 73 1 2 108 60 164 8.29e-11 58.2
Msa0252290 AT1G70430.3 29.412 136 71 5 2 123 62 186 9.69e-11 58.2
Msa0252290 AT3G23310.1 37.931 87 52 1 14 100 180 264 9.70e-11 58.2

Find 66 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAGGTAGGCTTGAAAT+AGG 0.228029 2_2:+43291978 Msa0252290:three_prime_UTR
TACTTTGTACTGTATGATAT+TGG 0.249189 2_2:+43291663 Msa0252290:three_prime_UTR
GCCAACGTAATCCTTTGTTT+TGG 0.286347 2_2:-43291731 None:intergenic
ATGTAGAAGTTATCCAATTC+TGG 0.313855 2_2:-43290495 None:intergenic
GCAGCAGATAGCTGGGTTAT+TGG 0.315257 2_2:+43291761 Msa0252290:three_prime_UTR
TTATGCTTCTAAAATGCATT+TGG 0.315877 2_2:+43291536 Msa0252290:three_prime_UTR
CTGATGTCGCAGCAGATAGC+TGG 0.334212 2_2:+43291753 Msa0252290:three_prime_UTR
CGAGTAATCAACAGATTATC+AGG 0.338053 2_2:-43291011 None:intergenic
CAATTCCTTTGTACTTGTGC+TGG 0.346266 2_2:+43291795 Msa0252290:three_prime_UTR
CGTCATGGTACAATGAAGAT+AGG 0.366739 2_2:+43291032 Msa0252290:CDS
TTGAATATGTGGAAGACAAA+TGG 0.367242 2_2:+43290637 Msa0252290:CDS
TATGCTTCTAAAATGCATTT+GGG 0.378023 2_2:+43291537 Msa0252290:three_prime_UTR
AGCTGGGTTATTGGAAATGA+TGG 0.391248 2_2:+43291770 Msa0252290:three_prime_UTR
CAGCACAAGTACAAAGGAAT+TGG 0.402473 2_2:-43291794 None:intergenic
TACTTGCGTGATATAGTTTG+TGG 0.407512 2_2:+43290714 Msa0252290:CDS
TCAATCAGATTGACTATGTT+AGG 0.413043 2_2:-43290459 None:intergenic
TCTAAAATGCATTTGGGTAA+TGG 0.414675 2_2:+43291543 Msa0252290:three_prime_UTR
ACTTTGTACTGTATGATATT+GGG 0.418226 2_2:+43291664 Msa0252290:three_prime_UTR
CATTAAGGTGCAGTGAAAAC+AGG 0.419774 2_2:-43291490 None:intergenic
TTCCTTACTGTACACTAGAA+TGG 0.421775 2_2:+43291949 Msa0252290:three_prime_UTR
GGTGATTGATGACCCAGAAT+TGG 0.428905 2_2:+43290482 Msa0252290:CDS
GCAGTGAAAACAGGAGTTCC+AGG 0.441173 2_2:-43291481 None:intergenic
TGAATATGTGGAAGACAAAT+GGG 0.441978 2_2:+43290638 Msa0252290:CDS
GCCCATGTGTCACCAAGAAA+AGG 0.452689 2_2:-43291694 None:intergenic
ATAGAGGTAGGCTTGAAATA+GGG 0.459504 2_2:+43291979 Msa0252290:three_prime_UTR
CTAGAATGGTTTGATTATAG+AGG 0.464103 2_2:+43291963 Msa0252290:three_prime_UTR
TGTACTTGTGCTGGTGCAAA+AGG 0.464155 2_2:+43291804 Msa0252290:three_prime_UTR
AAATGGGTTTGTGAAGGTTC+AGG 0.466210 2_2:+43290654 Msa0252290:CDS
TGTAGAAGTTATCCAATTCT+GGG 0.482254 2_2:-43290494 None:intergenic
CAATACAGTACTTGAATATG+TGG 0.488989 2_2:+43290626 Msa0252290:intron
GTCATGGTACAATGAAGATA+GGG 0.497257 2_2:+43291033 Msa0252290:CDS
AGGGGATTTCAGTGTCAGCC+AGG 0.505554 2_2:+43291052 Msa0252290:CDS
GTTACCTACAGTGGTAAAGC+TGG 0.508319 2_2:+43291619 Msa0252290:three_prime_UTR
GTGGTAAAGCTGGGGACACA+TGG 0.514304 2_2:+43291629 Msa0252290:three_prime_UTR
TGAATAAAATCAGTCAGTAT+AGG 0.525673 2_2:-43291879 None:intergenic
CCCATGTGTCACCAAGAAAA+GGG 0.525928 2_2:-43291693 None:intergenic
TATAGGTCAACGAAGCATCT+TGG 0.527956 2_2:-43291862 None:intergenic
GATATGCTTCGACGATCACC+TGG 0.533902 2_2:+43291463 Msa0252290:CDS
GAATTGGATAACTTCTACAT+GGG 0.536456 2_2:+43290498 Msa0252290:CDS
AATGGTTTGATTATAGAGGT+AGG 0.542481 2_2:+43291967 Msa0252290:three_prime_UTR
GTTGCATTACCTCACAAGCC+TGG 0.550563 2_2:-43291070 None:intergenic
TAACATAGTCAATCTGATTG+AGG 0.550984 2_2:+43290461 Msa0252290:CDS
TTACCTACAGTGGTAAAGCT+GGG 0.558571 2_2:+43291620 Msa0252290:three_prime_UTR
CAGTGTCAGCCAGGCTTGTG+AGG 0.561168 2_2:+43291061 Msa0252290:CDS
AACCATTCTAGTGTACAGTA+AGG 0.564838 2_2:-43291951 None:intergenic
AAAGAAATATTACATGAGCA+TGG 0.564906 2_2:-43290749 None:intergenic
AGAATTGGATAACTTCTACA+TGG 0.571002 2_2:+43290497 Msa0252290:CDS
TGATGTCGCAGCAGATAGCT+GGG 0.572732 2_2:+43291754 Msa0252290:three_prime_UTR
CCTAGCAGTCTCTTCACGTA+AGG 0.574911 2_2:-43290688 None:intergenic
GCTGGGGACACATGGGCTGT+AGG 0.582632 2_2:+43291637 Msa0252290:three_prime_UTR
GCTGGGTTATTGGAAATGAT+GGG 0.595401 2_2:+43291771 Msa0252290:three_prime_UTR
CCTTACGTGAAGAGACTGCT+AGG 0.601669 2_2:+43290688 Msa0252290:CDS
TTACATTTGTATATTTACAG+TGG 0.602362 2_2:+43291906 Msa0252290:three_prime_UTR
AATCTGTTGATTACTCGTCA+TGG 0.618110 2_2:+43291017 Msa0252290:CDS
TCATGGTACAATGAAGATAG+GGG 0.621470 2_2:+43291034 Msa0252290:CDS
TTGCACCAGCACAAGTACAA+AGG 0.628888 2_2:-43291800 None:intergenic
TGGTAAAGCTGGGGACACAT+GGG 0.633696 2_2:+43291630 Msa0252290:three_prime_UTR
CAAAAGGAAGAACTTGGTGA+AGG 0.642700 2_2:+43291820 Msa0252290:three_prime_UTR
AAGATGCAGACCCAAAACAA+AGG 0.642755 2_2:+43291720 Msa0252290:three_prime_UTR
GTAACGCAGAATATAGTACA+TGG 0.644939 2_2:+43290978 Msa0252290:intron
GAAGACAAATGGGTTTGTGA+AGG 0.660526 2_2:+43290648 Msa0252290:CDS
CTGGTGCAAAAGGAAGAACT+TGG 0.662500 2_2:+43291814 Msa0252290:three_prime_UTR
TAATGGTGTCTACGAAACGC+AGG 0.667134 2_2:+43291560 Msa0252290:three_prime_UTR
CCCAAAACAAAGGATTACGT+TGG 0.674755 2_2:+43291730 Msa0252290:three_prime_UTR
TACCTACAGTGGTAAAGCTG+GGG 0.689801 2_2:+43291621 Msa0252290:three_prime_UTR
GTCCCCAGCTTTACCACTGT+AGG 0.742193 2_2:-43291623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTGTATTTTATC+CGG - chr2_2:43290852-43290871 None:intergenic 10.0%
!! AAATACTTAAAATATAACAA+TGG + chr2_2:43291115-43291134 Msa0252290:intron 10.0%
!!! TTTATTTTTTGTATTTTATC+CGG - chr2_2:43290852-43290871 None:intergenic 10.0%
!! AAATACTTAAAATATAACAA+TGG + chr2_2:43291115-43291134 Msa0252290:intron 10.0%
!! AAAAAAAGAAAAGCTAAATT+AGG - chr2_2:43290580-43290599 None:intergenic 15.0%
!! AAGTATTTAAATTAACATTC+AGG - chr2_2:43291103-43291122 None:intergenic 15.0%
!!! TACAATTTTTTCTTTTTGTT+TGG + chr2_2:43291340-43291359 Msa0252290:intron 15.0%
!! AAAAAAAGAAAAGCTAAATT+AGG - chr2_2:43290580-43290599 None:intergenic 15.0%
!! AAGTATTTAAATTAACATTC+AGG - chr2_2:43291103-43291122 None:intergenic 15.0%
!!! TACAATTTTTTCTTTTTGTT+TGG + chr2_2:43291340-43291359 Msa0252290:intron 15.0%
!! TGATAAAGAAAATAAGTGTA+TGG + chr2_2:43290362-43290381 Msa0252290:intron 20.0%
!!! TATGGTAGATTTTAATTTGA+AGG + chr2_2:43290380-43290399 Msa0252290:intron 20.0%
!! AAATAAGGAATATGATTACT+TGG + chr2_2:43291234-43291253 Msa0252290:intron 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG + chr2_2:43291595-43291614 Msa0252290:three_prime_UTR 20.0%
!! TTACATTTGTATATTTACAG+TGG + chr2_2:43291906-43291925 Msa0252290:three_prime_UTR 20.0%
!! TGATAAAGAAAATAAGTGTA+TGG + chr2_2:43290362-43290381 Msa0252290:intron 20.0%
!!! TATGGTAGATTTTAATTTGA+AGG + chr2_2:43290380-43290399 Msa0252290:intron 20.0%
!! AAATAAGGAATATGATTACT+TGG + chr2_2:43291234-43291253 Msa0252290:intron 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG + chr2_2:43291595-43291614 Msa0252290:three_prime_UTR 20.0%
!! TTACATTTGTATATTTACAG+TGG + chr2_2:43291906-43291925 Msa0252290:three_prime_UTR 20.0%
!! TATGAAAATGCTTTCTTTTC+AGG + chr2_2:43290410-43290429 Msa0252290:intron 25.0%
!!! CTAGTTTTTTCTTTCTTTCT+TGG + chr2_2:43290530-43290549 Msa0252290:intron 25.0%
! AAAGAAATATTACATGAGCA+TGG - chr2_2:43290752-43290771 None:intergenic 25.0%
! CAAATGTATCATGTAAAGAT+TGG - chr2_2:43290776-43290795 None:intergenic 25.0%
! TTGTATGTTATATATTCTGC+CGG + chr2_2:43290830-43290849 Msa0252290:intron 25.0%
! AACATGATTAAACTATTCCA+AGG - chr2_2:43290930-43290949 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG + chr2_2:43291219-43291238 Msa0252290:intron 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG + chr2_2:43291262-43291281 Msa0252290:intron 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG - chr2_2:43291303-43291322 None:intergenic 25.0%
!! ATTTTATCATAAACTCTGCA+TGG - chr2_2:43291392-43291411 None:intergenic 25.0%
!!! TTATGCTTCTAAAATGCATT+TGG + chr2_2:43291536-43291555 Msa0252290:three_prime_UTR 25.0%
!!! TATGCTTCTAAAATGCATTT+GGG + chr2_2:43291537-43291556 Msa0252290:three_prime_UTR 25.0%
! TACTTTGTACTGTATGATAT+TGG + chr2_2:43291663-43291682 Msa0252290:three_prime_UTR 25.0%
! ACTTTGTACTGTATGATATT+GGG + chr2_2:43291664-43291683 Msa0252290:three_prime_UTR 25.0%
! TGAATAAAATCAGTCAGTAT+AGG - chr2_2:43291882-43291901 None:intergenic 25.0%
!!! TACTGACTGATTTTATTCAT+AGG + chr2_2:43291883-43291902 Msa0252290:three_prime_UTR 25.0%
!! TGTTGAAATGATTTTATGTC+TGG + chr2_2:43292051-43292070 Msa0252290:three_prime_UTR 25.0%
!! TATGAAAATGCTTTCTTTTC+AGG + chr2_2:43290410-43290429 Msa0252290:intron 25.0%
!!! CTAGTTTTTTCTTTCTTTCT+TGG + chr2_2:43290530-43290549 Msa0252290:intron 25.0%
! AAAGAAATATTACATGAGCA+TGG - chr2_2:43290752-43290771 None:intergenic 25.0%
! CAAATGTATCATGTAAAGAT+TGG - chr2_2:43290776-43290795 None:intergenic 25.0%
! TTGTATGTTATATATTCTGC+CGG + chr2_2:43290830-43290849 Msa0252290:intron 25.0%
! AACATGATTAAACTATTCCA+AGG - chr2_2:43290930-43290949 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG + chr2_2:43291219-43291238 Msa0252290:intron 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG + chr2_2:43291262-43291281 Msa0252290:intron 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG - chr2_2:43291303-43291322 None:intergenic 25.0%
!! ATTTTATCATAAACTCTGCA+TGG - chr2_2:43291392-43291411 None:intergenic 25.0%
!!! TTATGCTTCTAAAATGCATT+TGG + chr2_2:43291536-43291555 Msa0252290:three_prime_UTR 25.0%
!!! TATGCTTCTAAAATGCATTT+GGG + chr2_2:43291537-43291556 Msa0252290:three_prime_UTR 25.0%
! TACTTTGTACTGTATGATAT+TGG + chr2_2:43291663-43291682 Msa0252290:three_prime_UTR 25.0%
! ACTTTGTACTGTATGATATT+GGG + chr2_2:43291664-43291683 Msa0252290:three_prime_UTR 25.0%
! TGAATAAAATCAGTCAGTAT+AGG - chr2_2:43291882-43291901 None:intergenic 25.0%
!!! TACTGACTGATTTTATTCAT+AGG + chr2_2:43291883-43291902 Msa0252290:three_prime_UTR 25.0%
!! TGTTGAAATGATTTTATGTC+TGG + chr2_2:43292051-43292070 Msa0252290:three_prime_UTR 25.0%
TCAATCAGATTGACTATGTT+AGG - chr2_2:43290462-43290481 None:intergenic 30.0%
TAACATAGTCAATCTGATTG+AGG + chr2_2:43290461-43290480 Msa0252290:CDS 30.0%
TGTAGAAGTTATCCAATTCT+GGG - chr2_2:43290497-43290516 None:intergenic 30.0%
ATGTAGAAGTTATCCAATTC+TGG - chr2_2:43290498-43290517 None:intergenic 30.0%
AGAATTGGATAACTTCTACA+TGG + chr2_2:43290497-43290516 Msa0252290:CDS 30.0%
GAATTGGATAACTTCTACAT+GGG + chr2_2:43290498-43290517 Msa0252290:CDS 30.0%
!! AGCTTTTCTTTTTTTGTCTG+AGG + chr2_2:43290585-43290604 Msa0252290:intron 30.0%
CAATACAGTACTTGAATATG+TGG + chr2_2:43290626-43290645 Msa0252290:intron 30.0%
TTGAATATGTGGAAGACAAA+TGG + chr2_2:43290637-43290656 Msa0252290:CDS 30.0%
TGAATATGTGGAAGACAAAT+GGG + chr2_2:43290638-43290657 Msa0252290:CDS 30.0%
! ACACAACTTTTGCATATCAA+TGG + chr2_2:43290803-43290822 Msa0252290:intron 30.0%
ACAATATCATCCAAGTAAAG+TGG - chr2_2:43291143-43291162 None:intergenic 30.0%
AGAAAAAGATGTATCCTAAG+CGG - chr2_2:43291177-43291196 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG + chr2_2:43291243-43291262 Msa0252290:intron 30.0%
GACTTAATATGAAGCCTATA+TGG + chr2_2:43291417-43291436 Msa0252290:intron 30.0%
CTGCAAAATGAAAACCATAT+AGG - chr2_2:43291434-43291453 None:intergenic 30.0%
! CTATATGGTTTTCATTTTGC+AGG + chr2_2:43291432-43291451 Msa0252290:intron 30.0%
! ACTGCACCTTAATGTATTTT+TGG + chr2_2:43291499-43291518 Msa0252290:exon 30.0%
!!! CACCTTAATGTATTTTTGGT+TGG + chr2_2:43291503-43291522 Msa0252290:exon 30.0%
CACCAACCAAAAATACATTA+AGG - chr2_2:43291508-43291527 None:intergenic 30.0%
! TCTAAAATGCATTTGGGTAA+TGG + chr2_2:43291543-43291562 Msa0252290:three_prime_UTR 30.0%
CTAGAATGGTTTGATTATAG+AGG + chr2_2:43291963-43291982 Msa0252290:three_prime_UTR 30.0%
AATGGTTTGATTATAGAGGT+AGG + chr2_2:43291967-43291986 Msa0252290:three_prime_UTR 30.0%
!! TATGTCTCATTTTTGAGCAA+AGG + chr2_2:43292010-43292029 Msa0252290:three_prime_UTR 30.0%
!! ATGTCTCATTTTTGAGCAAA+GGG + chr2_2:43292011-43292030 Msa0252290:three_prime_UTR 30.0%
TCAATCAGATTGACTATGTT+AGG - chr2_2:43290462-43290481 None:intergenic 30.0%
TAACATAGTCAATCTGATTG+AGG + chr2_2:43290461-43290480 Msa0252290:CDS 30.0%
TGTAGAAGTTATCCAATTCT+GGG - chr2_2:43290497-43290516 None:intergenic 30.0%
ATGTAGAAGTTATCCAATTC+TGG - chr2_2:43290498-43290517 None:intergenic 30.0%
AGAATTGGATAACTTCTACA+TGG + chr2_2:43290497-43290516 Msa0252290:CDS 30.0%
GAATTGGATAACTTCTACAT+GGG + chr2_2:43290498-43290517 Msa0252290:CDS 30.0%
!! AGCTTTTCTTTTTTTGTCTG+AGG + chr2_2:43290585-43290604 Msa0252290:intron 30.0%
CAATACAGTACTTGAATATG+TGG + chr2_2:43290626-43290645 Msa0252290:intron 30.0%
TTGAATATGTGGAAGACAAA+TGG + chr2_2:43290637-43290656 Msa0252290:CDS 30.0%
TGAATATGTGGAAGACAAAT+GGG + chr2_2:43290638-43290657 Msa0252290:CDS 30.0%
! ACACAACTTTTGCATATCAA+TGG + chr2_2:43290803-43290822 Msa0252290:intron 30.0%
ACAATATCATCCAAGTAAAG+TGG - chr2_2:43291143-43291162 None:intergenic 30.0%
AGAAAAAGATGTATCCTAAG+CGG - chr2_2:43291177-43291196 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG + chr2_2:43291243-43291262 Msa0252290:intron 30.0%
GACTTAATATGAAGCCTATA+TGG + chr2_2:43291417-43291436 Msa0252290:intron 30.0%
CTGCAAAATGAAAACCATAT+AGG - chr2_2:43291434-43291453 None:intergenic 30.0%
! CTATATGGTTTTCATTTTGC+AGG + chr2_2:43291432-43291451 Msa0252290:intron 30.0%
! ACTGCACCTTAATGTATTTT+TGG + chr2_2:43291499-43291518 Msa0252290:exon 30.0%
!!! CACCTTAATGTATTTTTGGT+TGG + chr2_2:43291503-43291522 Msa0252290:exon 30.0%
CACCAACCAAAAATACATTA+AGG - chr2_2:43291508-43291527 None:intergenic 30.0%
! TCTAAAATGCATTTGGGTAA+TGG + chr2_2:43291543-43291562 Msa0252290:three_prime_UTR 30.0%
CTAGAATGGTTTGATTATAG+AGG + chr2_2:43291963-43291982 Msa0252290:three_prime_UTR 30.0%
AATGGTTTGATTATAGAGGT+AGG + chr2_2:43291967-43291986 Msa0252290:three_prime_UTR 30.0%
!! TATGTCTCATTTTTGAGCAA+AGG + chr2_2:43292010-43292029 Msa0252290:three_prime_UTR 30.0%
!! ATGTCTCATTTTTGAGCAAA+GGG + chr2_2:43292011-43292030 Msa0252290:three_prime_UTR 30.0%
TACTTGCGTGATATAGTTTG+TGG + chr2_2:43290714-43290733 Msa0252290:CDS 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG + chr2_2:43290875-43290894 Msa0252290:intron 35.0%
GTAACGCAGAATATAGTACA+TGG + chr2_2:43290978-43290997 Msa0252290:intron 35.0%
CGAGTAATCAACAGATTATC+AGG - chr2_2:43291014-43291033 None:intergenic 35.0%
! AATCTGTTGATTACTCGTCA+TGG + chr2_2:43291017-43291036 Msa0252290:CDS 35.0%
GTCATGGTACAATGAAGATA+GGG + chr2_2:43291033-43291052 Msa0252290:CDS 35.0%
TCATGGTACAATGAAGATAG+GGG + chr2_2:43291034-43291053 Msa0252290:CDS 35.0%
AACAATGGTACCACTTTACT+TGG + chr2_2:43291130-43291149 Msa0252290:intron 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG + chr2_2:43291610-43291629 Msa0252290:three_prime_UTR 35.0%
!!! CCAACGTAATCCTTTGTTTT+GGG - chr2_2:43291733-43291752 None:intergenic 35.0%
TTCCTTACTGTACACTAGAA+TGG + chr2_2:43291949-43291968 Msa0252290:three_prime_UTR 35.0%
AACCATTCTAGTGTACAGTA+AGG - chr2_2:43291954-43291973 None:intergenic 35.0%
TATAGAGGTAGGCTTGAAAT+AGG + chr2_2:43291978-43291997 Msa0252290:three_prime_UTR 35.0%
ATAGAGGTAGGCTTGAAATA+GGG + chr2_2:43291979-43291998 Msa0252290:three_prime_UTR 35.0%
! CAAAGGGATGTTGTTCTTTT+TGG + chr2_2:43292027-43292046 Msa0252290:three_prime_UTR 35.0%
TACTTGCGTGATATAGTTTG+TGG + chr2_2:43290714-43290733 Msa0252290:CDS 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG + chr2_2:43290875-43290894 Msa0252290:intron 35.0%
GTAACGCAGAATATAGTACA+TGG + chr2_2:43290978-43290997 Msa0252290:intron 35.0%
CGAGTAATCAACAGATTATC+AGG - chr2_2:43291014-43291033 None:intergenic 35.0%
! AATCTGTTGATTACTCGTCA+TGG + chr2_2:43291017-43291036 Msa0252290:CDS 35.0%
GTCATGGTACAATGAAGATA+GGG + chr2_2:43291033-43291052 Msa0252290:CDS 35.0%
TCATGGTACAATGAAGATAG+GGG + chr2_2:43291034-43291053 Msa0252290:CDS 35.0%
AACAATGGTACCACTTTACT+TGG + chr2_2:43291130-43291149 Msa0252290:intron 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG + chr2_2:43291610-43291629 Msa0252290:three_prime_UTR 35.0%
!!! CCAACGTAATCCTTTGTTTT+GGG - chr2_2:43291733-43291752 None:intergenic 35.0%
TTCCTTACTGTACACTAGAA+TGG + chr2_2:43291949-43291968 Msa0252290:three_prime_UTR 35.0%
AACCATTCTAGTGTACAGTA+AGG - chr2_2:43291954-43291973 None:intergenic 35.0%
TATAGAGGTAGGCTTGAAAT+AGG + chr2_2:43291978-43291997 Msa0252290:three_prime_UTR 35.0%
ATAGAGGTAGGCTTGAAATA+GGG + chr2_2:43291979-43291998 Msa0252290:three_prime_UTR 35.0%
! CAAAGGGATGTTGTTCTTTT+TGG + chr2_2:43292027-43292046 Msa0252290:three_prime_UTR 35.0%
! GAAGACAAATGGGTTTGTGA+AGG + chr2_2:43290648-43290667 Msa0252290:CDS 40.0%
! AAATGGGTTTGTGAAGGTTC+AGG + chr2_2:43290654-43290673 Msa0252290:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG + chr2_2:43290910-43290929 Msa0252290:intron 40.0%
CGTCATGGTACAATGAAGAT+AGG + chr2_2:43291032-43291051 Msa0252290:CDS 40.0%
TCTGCATGGAGTATGTCAAA+GGG - chr2_2:43291378-43291397 None:intergenic 40.0%
CATTAAGGTGCAGTGAAAAC+AGG - chr2_2:43291493-43291512 None:intergenic 40.0%
TTACCTACAGTGGTAAAGCT+GGG + chr2_2:43291620-43291639 Msa0252290:three_prime_UTR 40.0%
! TTGGGTGAATACCCTTTTCT+TGG + chr2_2:43291682-43291701 Msa0252290:three_prime_UTR 40.0%
AAGATGCAGACCCAAAACAA+AGG + chr2_2:43291720-43291739 Msa0252290:three_prime_UTR 40.0%
CCCAAAACAAAGGATTACGT+TGG + chr2_2:43291730-43291749 Msa0252290:three_prime_UTR 40.0%
!! GCCAACGTAATCCTTTGTTT+TGG - chr2_2:43291734-43291753 None:intergenic 40.0%
AGCTGGGTTATTGGAAATGA+TGG + chr2_2:43291770-43291789 Msa0252290:three_prime_UTR 40.0%
GCTGGGTTATTGGAAATGAT+GGG + chr2_2:43291771-43291790 Msa0252290:three_prime_UTR 40.0%
CAGCACAAGTACAAAGGAAT+TGG - chr2_2:43291797-43291816 None:intergenic 40.0%
CAATTCCTTTGTACTTGTGC+TGG + chr2_2:43291795-43291814 Msa0252290:three_prime_UTR 40.0%
! CAAAAGGAAGAACTTGGTGA+AGG + chr2_2:43291820-43291839 Msa0252290:three_prime_UTR 40.0%
! TATAGGTCAACGAAGCATCT+TGG - chr2_2:43291865-43291884 None:intergenic 40.0%
! GAAGACAAATGGGTTTGTGA+AGG + chr2_2:43290648-43290667 Msa0252290:CDS 40.0%
! AAATGGGTTTGTGAAGGTTC+AGG + chr2_2:43290654-43290673 Msa0252290:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG + chr2_2:43290910-43290929 Msa0252290:intron 40.0%
CGTCATGGTACAATGAAGAT+AGG + chr2_2:43291032-43291051 Msa0252290:CDS 40.0%
TCTGCATGGAGTATGTCAAA+GGG - chr2_2:43291378-43291397 None:intergenic 40.0%
CATTAAGGTGCAGTGAAAAC+AGG - chr2_2:43291493-43291512 None:intergenic 40.0%
TTACCTACAGTGGTAAAGCT+GGG + chr2_2:43291620-43291639 Msa0252290:three_prime_UTR 40.0%
! TTGGGTGAATACCCTTTTCT+TGG + chr2_2:43291682-43291701 Msa0252290:three_prime_UTR 40.0%
AAGATGCAGACCCAAAACAA+AGG + chr2_2:43291720-43291739 Msa0252290:three_prime_UTR 40.0%
CCCAAAACAAAGGATTACGT+TGG + chr2_2:43291730-43291749 Msa0252290:three_prime_UTR 40.0%
!! GCCAACGTAATCCTTTGTTT+TGG - chr2_2:43291734-43291753 None:intergenic 40.0%
AGCTGGGTTATTGGAAATGA+TGG + chr2_2:43291770-43291789 Msa0252290:three_prime_UTR 40.0%
GCTGGGTTATTGGAAATGAT+GGG + chr2_2:43291771-43291790 Msa0252290:three_prime_UTR 40.0%
CAGCACAAGTACAAAGGAAT+TGG - chr2_2:43291797-43291816 None:intergenic 40.0%
CAATTCCTTTGTACTTGTGC+TGG + chr2_2:43291795-43291814 Msa0252290:three_prime_UTR 40.0%
! CAAAAGGAAGAACTTGGTGA+AGG + chr2_2:43291820-43291839 Msa0252290:three_prime_UTR 40.0%
! TATAGGTCAACGAAGCATCT+TGG - chr2_2:43291865-43291884 None:intergenic 40.0%
! GGTGATTGATGACCCAGAAT+TGG + chr2_2:43290482-43290501 Msa0252290:CDS 45.0%
! TGTATCTTCAACTGCCGCTT+AGG + chr2_2:43291160-43291179 Msa0252290:intron 45.0%
TGCATGGAGTATGTCAAAGG+GGG - chr2_2:43291376-43291395 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG - chr2_2:43291377-43291396 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG - chr2_2:43291379-43291398 None:intergenic 45.0%
TAATGGTGTCTACGAAACGC+AGG + chr2_2:43291560-43291579 Msa0252290:three_prime_UTR 45.0%
GTTACCTACAGTGGTAAAGC+TGG + chr2_2:43291619-43291638 Msa0252290:three_prime_UTR 45.0%
TACCTACAGTGGTAAAGCTG+GGG + chr2_2:43291621-43291640 Msa0252290:three_prime_UTR 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG + chr2_2:43291692-43291711 Msa0252290:three_prime_UTR 45.0%
CCCATGTGTCACCAAGAAAA+GGG - chr2_2:43291696-43291715 None:intergenic 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG + chr2_2:43291693-43291712 Msa0252290:three_prime_UTR 45.0%
TTGCACCAGCACAAGTACAA+AGG - chr2_2:43291803-43291822 None:intergenic 45.0%
! TGTACTTGTGCTGGTGCAAA+AGG + chr2_2:43291804-43291823 Msa0252290:three_prime_UTR 45.0%
CTGGTGCAAAAGGAAGAACT+TGG + chr2_2:43291814-43291833 Msa0252290:three_prime_UTR 45.0%
! GGTGATTGATGACCCAGAAT+TGG + chr2_2:43290482-43290501 Msa0252290:CDS 45.0%
! TGTATCTTCAACTGCCGCTT+AGG + chr2_2:43291160-43291179 Msa0252290:intron 45.0%
TGCATGGAGTATGTCAAAGG+GGG - chr2_2:43291376-43291395 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG - chr2_2:43291377-43291396 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG - chr2_2:43291379-43291398 None:intergenic 45.0%
TAATGGTGTCTACGAAACGC+AGG + chr2_2:43291560-43291579 Msa0252290:three_prime_UTR 45.0%
GTTACCTACAGTGGTAAAGC+TGG + chr2_2:43291619-43291638 Msa0252290:three_prime_UTR 45.0%
TACCTACAGTGGTAAAGCTG+GGG + chr2_2:43291621-43291640 Msa0252290:three_prime_UTR 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG + chr2_2:43291692-43291711 Msa0252290:three_prime_UTR 45.0%
CCCATGTGTCACCAAGAAAA+GGG - chr2_2:43291696-43291715 None:intergenic 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG + chr2_2:43291693-43291712 Msa0252290:three_prime_UTR 45.0%
TTGCACCAGCACAAGTACAA+AGG - chr2_2:43291803-43291822 None:intergenic 45.0%
! TGTACTTGTGCTGGTGCAAA+AGG + chr2_2:43291804-43291823 Msa0252290:three_prime_UTR 45.0%
CTGGTGCAAAAGGAAGAACT+TGG + chr2_2:43291814-43291833 Msa0252290:three_prime_UTR 45.0%
CCTAGCAGTCTCTTCACGTA+AGG - chr2_2:43290691-43290710 None:intergenic 50.0%
CCTTACGTGAAGAGACTGCT+AGG + chr2_2:43290688-43290707 Msa0252290:CDS 50.0%
GTTGCATTACCTCACAAGCC+TGG - chr2_2:43291073-43291092 None:intergenic 50.0%
ATGGAGTATGTCAAAGGGGG+TGG - chr2_2:43291373-43291392 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG + chr2_2:43291463-43291482 Msa0252290:CDS 50.0%
GCAGTGAAAACAGGAGTTCC+AGG - chr2_2:43291484-43291503 None:intergenic 50.0%
TGGTAAAGCTGGGGACACAT+GGG + chr2_2:43291630-43291649 Msa0252290:three_prime_UTR 50.0%
GCCCATGTGTCACCAAGAAA+AGG - chr2_2:43291697-43291716 None:intergenic 50.0%
TGATGTCGCAGCAGATAGCT+GGG + chr2_2:43291754-43291773 Msa0252290:three_prime_UTR 50.0%
GCAGCAGATAGCTGGGTTAT+TGG + chr2_2:43291761-43291780 Msa0252290:three_prime_UTR 50.0%
CCTAGCAGTCTCTTCACGTA+AGG - chr2_2:43290691-43290710 None:intergenic 50.0%
CCTTACGTGAAGAGACTGCT+AGG + chr2_2:43290688-43290707 Msa0252290:CDS 50.0%
GTTGCATTACCTCACAAGCC+TGG - chr2_2:43291073-43291092 None:intergenic 50.0%
ATGGAGTATGTCAAAGGGGG+TGG - chr2_2:43291373-43291392 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG + chr2_2:43291463-43291482 Msa0252290:CDS 50.0%
GCAGTGAAAACAGGAGTTCC+AGG - chr2_2:43291484-43291503 None:intergenic 50.0%
TGGTAAAGCTGGGGACACAT+GGG + chr2_2:43291630-43291649 Msa0252290:three_prime_UTR 50.0%
GCCCATGTGTCACCAAGAAA+AGG - chr2_2:43291697-43291716 None:intergenic 50.0%
TGATGTCGCAGCAGATAGCT+GGG + chr2_2:43291754-43291773 Msa0252290:three_prime_UTR 50.0%
GCAGCAGATAGCTGGGTTAT+TGG + chr2_2:43291761-43291780 Msa0252290:three_prime_UTR 50.0%
AGGGGATTTCAGTGTCAGCC+AGG + chr2_2:43291052-43291071 Msa0252290:CDS 55.0%
GTCCCCAGCTTTACCACTGT+AGG - chr2_2:43291626-43291645 None:intergenic 55.0%
GTGGTAAAGCTGGGGACACA+TGG + chr2_2:43291629-43291648 Msa0252290:three_prime_UTR 55.0%
CTGATGTCGCAGCAGATAGC+TGG + chr2_2:43291753-43291772 Msa0252290:three_prime_UTR 55.0%
AGGGGATTTCAGTGTCAGCC+AGG + chr2_2:43291052-43291071 Msa0252290:CDS 55.0%
GTCCCCAGCTTTACCACTGT+AGG - chr2_2:43291626-43291645 None:intergenic 55.0%
GTGGTAAAGCTGGGGACACA+TGG + chr2_2:43291629-43291648 Msa0252290:three_prime_UTR 55.0%
CTGATGTCGCAGCAGATAGC+TGG + chr2_2:43291753-43291772 Msa0252290:three_prime_UTR 55.0%
CAGTGTCAGCCAGGCTTGTG+AGG + chr2_2:43291061-43291080 Msa0252290:CDS 60.0%
CAGTGTCAGCCAGGCTTGTG+AGG + chr2_2:43291061-43291080 Msa0252290:CDS 60.0%
! GCTGGGGACACATGGGCTGT+AGG + chr2_2:43291637-43291656 Msa0252290:three_prime_UTR 65.0%
! GCTGGGGACACATGGGCTGT+AGG + chr2_2:43291637-43291656 Msa0252290:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 43290355 43292092 43290355 ID=Msa0252290;Name=Msa0252290
chr2_2 mRNA 43290355 43292092 43290355 ID=Msa0252290-mRNA-1;Parent=Msa0252290;Name=Msa0252290-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.25|0.2|0.8|1|1|5|582|123
chr2_2 exon 43290355 43290360 43290355 ID=Msa0252290-mRNA-1:exon:13419;Parent=Msa0252290-mRNA-1
chr2_2 exon 43290432 43290519 43290432 ID=Msa0252290-mRNA-1:exon:13420;Parent=Msa0252290-mRNA-1
chr2_2 exon 43290634 43290758 43290634 ID=Msa0252290-mRNA-1:exon:13421;Parent=Msa0252290-mRNA-1
chr2_2 exon 43290987 43291082 43290987 ID=Msa0252290-mRNA-1:exon:13422;Parent=Msa0252290-mRNA-1
chr2_2 exon 43291454 43292092 43291454 ID=Msa0252290-mRNA-1:exon:13423;Parent=Msa0252290-mRNA-1
chr2_2 CDS 43290355 43290360 43290355 ID=Msa0252290-mRNA-1:cds;Parent=Msa0252290-mRNA-1
chr2_2 CDS 43290432 43290519 43290432 ID=Msa0252290-mRNA-1:cds;Parent=Msa0252290-mRNA-1
chr2_2 CDS 43290634 43290758 43290634 ID=Msa0252290-mRNA-1:cds;Parent=Msa0252290-mRNA-1
chr2_2 CDS 43290987 43291082 43290987 ID=Msa0252290-mRNA-1:cds;Parent=Msa0252290-mRNA-1
chr2_2 CDS 43291454 43291510 43291454 ID=Msa0252290-mRNA-1:cds;Parent=Msa0252290-mRNA-1
chr2_2 three_prime_UTR 43291511 43292092 43291511 ID=Msa0252290-mRNA-1:three_prime_utr;Parent=Msa0252290-mRNA-1
Gene Sequence

>Msa0252290

ATGAAGGTTTTCATTATGAAAATGCTGCAACATCCTAACATAGTCAATCTGATTGAGGTGATTGATGACCCAGAATTGGATAACTTCTACATGGTACTTGAATATGTGGAAGACAAATGGGTTTGTGAAGGTTCAGGTCGAGCTTGTGCCTTACGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAGTTTGTGGATTAATGTATCTCCATGCTCATAATATAGTACATGGAGATATCAAGCCTGATAATCTGTTGATTACTCGTCATGGTACAATGAAGATAGGGGATTTCAGTGTCAGCCAGGCTTGTGAGGATGATAATGATATGCTTCGACGATCACCTGGAACTCCTGTTTTCACTGCACCTTAA
Protein sequence

>Msa0252290

MKVFIMKMLQHPNIVNLIEVIDDPELDNFYMVLEYVEDKWVCEGSGRACALREETARRYLRDIVCGLMYLHAHNIVHGDIKPDNLLITRHGTMKIGDFSVSQACEDDNDMLRRSPGTPVFTAP*