Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252310 | KEH42071.1 | 89.164 | 323 | 17 | 9 | 1 | 312 | 172 | 487 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252310 | sp|Q9SA82|BH052_ARATH | 36.564 | 227 | 125 | 6 | 93 | 305 | 41 | 262 | 1.12e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252310 | A0A072VKB3 | 89.164 | 323 | 17 | 9 | 1 | 312 | 172 | 487 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0252310 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252310 | MtrunA17_Chr2g0311101 | 87.066 | 317 | 23 | 5 | 1 | 312 | 7 | 310 | 0.0 | 510 |
| Msa0252310 | MtrunA17_Chr1g0179061 | 86.992 | 246 | 15 | 8 | 7 | 241 | 1 | 240 | 2.54e-142 | 401 |
| Msa0252310 | MtrunA17_Chr8g0384141 | 58.491 | 53 | 22 | 0 | 182 | 234 | 125 | 177 | 6.96e-13 | 67.4 |
| Msa0252310 | MtrunA17_Chr3g0134001 | 58.491 | 53 | 22 | 0 | 182 | 234 | 182 | 234 | 2.76e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252310 | AT1G30670.1 | 36.564 | 227 | 125 | 6 | 93 | 305 | 41 | 262 | 1.14e-28 | 111 |
| Msa0252310 | AT2G34820.1 | 39.662 | 237 | 106 | 7 | 93 | 305 | 66 | 289 | 3.00e-28 | 110 |
| Msa0252310 | AT3G21330.1 | 60.377 | 53 | 21 | 0 | 182 | 234 | 280 | 332 | 5.04e-13 | 69.3 |
| Msa0252310 | AT5G01305.1 | 50.000 | 58 | 29 | 0 | 182 | 239 | 48 | 105 | 5.50e-12 | 63.5 |
Find 46 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTATGATTGCTCAATT+TGG | 0.191234 | 2_2:-43311500 | None:intergenic |
| AGTTGGAATGCTTCAACTTA+TGG | 0.195386 | 2_2:+43310563 | Msa0252310:CDS |
| ATCTCTGCTGTGTTCATCTT+TGG | 0.238213 | 2_2:-43310498 | None:intergenic |
| AAAATGAAATCTTCCTCATT+TGG | 0.263570 | 2_2:-43310183 | None:intergenic |
| AATTTGGTGACAAACTCTTT+TGG | 0.289383 | 2_2:-43311484 | None:intergenic |
| CCTCATAGTATAGCAGCTTT+TGG | 0.317037 | 2_2:-43310236 | None:intergenic |
| AAATGAAATCTTCCTCATTT+GGG | 0.325640 | 2_2:-43310182 | None:intergenic |
| TACAATTTCTCTTGAACAAA+TGG | 0.348402 | 2_2:-43311439 | None:intergenic |
| GAGAAGCTTCATTGAAATAG+TGG | 0.359894 | 2_2:-43310020 | None:intergenic |
| ATCAAAACCTACCATCCTTA+AGG | 0.361760 | 2_2:+43311528 | Msa0252310:CDS |
| AAATAACACTATTCTTGCTT+TGG | 0.365183 | 2_2:-43311589 | None:intergenic |
| GCAGTTTGAATAGGTTGATA+AGG | 0.385279 | 2_2:-43309934 | None:intergenic |
| TCGAAGGAAGCAAAAGGGTT+AGG | 0.397832 | 2_2:-43310330 | None:intergenic |
| TTGATTATTTCAGGAAGAAA+AGG | 0.418378 | 2_2:+43311375 | Msa0252310:intron |
| GAGCTAGGGAAGTTGGTTCC+TGG | 0.426916 | 2_2:+43310471 | Msa0252310:CDS |
| CAAGCTGTTTCAGACCCTTA+AGG | 0.427556 | 2_2:-43311543 | None:intergenic |
| GACACAAGAGCTAGGGAAGT+TGG | 0.431491 | 2_2:+43310464 | Msa0252310:CDS |
| TCAAAACCTACCATCCTTAA+GGG | 0.456430 | 2_2:+43311529 | Msa0252310:CDS |
| AAGGGTCTGAAACAGCTTGT+TGG | 0.460418 | 2_2:+43311547 | Msa0252310:CDS |
| TTGTGTAGATCTTCACTTGG+AGG | 0.465635 | 2_2:-43311403 | None:intergenic |
| AGTGGTGATTTCTGAGTTGT+TGG | 0.472171 | 2_2:-43309959 | None:intergenic |
| CGAAGGAAGCAAAAGGGTTA+GGG | 0.473469 | 2_2:-43310329 | None:intergenic |
| CAGTTTGAATAGGTTGATAA+GGG | 0.475268 | 2_2:-43309933 | None:intergenic |
| TTGTTGGTAGCAGTTTGAAT+AGG | 0.476845 | 2_2:-43309943 | None:intergenic |
| TCTGTCTCGAAGGAAGCAAA+AGG | 0.486756 | 2_2:-43310336 | None:intergenic |
| GTTCAATATGAGAAGAAAGT+TGG | 0.493290 | 2_2:+43310378 | Msa0252310:CDS |
| TGTAGATCTTCACTTGGAGG+AGG | 0.494574 | 2_2:-43311400 | None:intergenic |
| GTGTTCATCTTTGGTCCACC+AGG | 0.499817 | 2_2:-43310489 | None:intergenic |
| AGAGTATCGCGGCTCGAGAA+AGG | 0.514420 | 2_2:+43310421 | Msa0252310:CDS |
| ACTGAGAAGACACAAGAGCT+AGG | 0.516284 | 2_2:+43310456 | Msa0252310:CDS |
| CCAAAAGCTGCTATACTATG+AGG | 0.553268 | 2_2:+43310236 | Msa0252310:CDS |
| AGTTTGTGTAGATCTTCACT+TGG | 0.558027 | 2_2:-43311406 | None:intergenic |
| TTGTTCATGATGTTGAAAAG+TGG | 0.560071 | 2_2:-43309977 | None:intergenic |
| TCGCGGCTCGAGAAAGGAGA+AGG | 0.564993 | 2_2:+43310427 | Msa0252310:CDS |
| AAGTTTCTTCAAGCTCAAGT+TGG | 0.567049 | 2_2:+43310546 | Msa0252310:CDS |
| GAGTTCAAAAGCTCTTGTTG+TGG | 0.567814 | 2_2:-43310273 | None:intergenic |
| ACTTATGGAAACATTTAGCA+AGG | 0.569731 | 2_2:+43310578 | Msa0252310:CDS |
| ATGAGAAGAAAGTTGGTGAA+AGG | 0.571730 | 2_2:+43310385 | Msa0252310:CDS |
| TTCAGACCCTTAAGGATGGT+AGG | 0.578594 | 2_2:-43311535 | None:intergenic |
| CTGAGAAGACACAAGAGCTA+GGG | 0.585998 | 2_2:+43310457 | Msa0252310:CDS |
| CTGTCTCGAAGGAAGCAAAA+GGG | 0.604732 | 2_2:-43310335 | None:intergenic |
| CTAGGGAAGTTGGTTCCTGG+TGG | 0.615915 | 2_2:+43310474 | Msa0252310:CDS |
| CTGTTTCAGACCCTTAAGGA+TGG | 0.616344 | 2_2:-43311539 | None:intergenic |
| AGTAGTTGTTGATCTTGACA+AGG | 0.634276 | 2_2:-43310102 | None:intergenic |
| TATATCGTCGCAGAGTATCG+CGG | 0.664379 | 2_2:+43310410 | Msa0252310:CDS |
| GTAGTTGTTGATCTTGACAA+GGG | 0.670997 | 2_2:-43310101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTTTTTTGTTAACAT+GGG | + | chr2_2:43309877-43309896 | Msa0252310:CDS | 15.0% |
| !! | ATCTTTGTAAATATCTAAAA+TGG | + | chr2_2:43310779-43310798 | Msa0252310:intron | 15.0% |
| !!! | CACTATTAATTTTATTTTCT+AGG | - | chr2_2:43311257-43311276 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTTGTTAACAT+GGG | + | chr2_2:43309877-43309896 | Msa0252310:CDS | 15.0% |
| !! | ATCTTTGTAAATATCTAAAA+TGG | + | chr2_2:43310779-43310798 | Msa0252310:intron | 15.0% |
| !!! | CACTATTAATTTTATTTTCT+AGG | - | chr2_2:43311257-43311276 | None:intergenic | 15.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | - | chr2_2:43310075-43310094 | None:intergenic | 20.0% |
| !! | ACTAACTAAATCTACAATAA+TGG | - | chr2_2:43310814-43310833 | None:intergenic | 20.0% |
| !!! | AATATTTTCAGAGTAAAAGT+AGG | - | chr2_2:43310917-43310936 | None:intergenic | 20.0% |
| !!! | CTTTTACTCTGAAAATATTT+AGG | + | chr2_2:43310918-43310937 | Msa0252310:intron | 20.0% |
| !!! | CAATAAAAAAGAGAGTATTT+AGG | + | chr2_2:43311066-43311085 | Msa0252310:intron | 20.0% |
| !! | GAATATTTAAAAACAAAGAG+TGG | - | chr2_2:43311147-43311166 | None:intergenic | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | - | chr2_2:43311304-43311323 | None:intergenic | 20.0% |
| !!! | ATATGATCATTGATTATTTC+AGG | + | chr2_2:43311366-43311385 | Msa0252310:intron | 20.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | - | chr2_2:43310075-43310094 | None:intergenic | 20.0% |
| !! | ACTAACTAAATCTACAATAA+TGG | - | chr2_2:43310814-43310833 | None:intergenic | 20.0% |
| !!! | AATATTTTCAGAGTAAAAGT+AGG | - | chr2_2:43310917-43310936 | None:intergenic | 20.0% |
| !!! | CTTTTACTCTGAAAATATTT+AGG | + | chr2_2:43310918-43310937 | Msa0252310:intron | 20.0% |
| !!! | CAATAAAAAAGAGAGTATTT+AGG | + | chr2_2:43311066-43311085 | Msa0252310:intron | 20.0% |
| !! | GAATATTTAAAAACAAAGAG+TGG | - | chr2_2:43311147-43311166 | None:intergenic | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | - | chr2_2:43311304-43311323 | None:intergenic | 20.0% |
| !!! | ATATGATCATTGATTATTTC+AGG | + | chr2_2:43311366-43311385 | Msa0252310:intron | 20.0% |
| !!! | ATCATTTTGAGAAGAAAAAG+TGG | - | chr2_2:43310136-43310155 | None:intergenic | 25.0% |
| !!! | ACTTTTTCTTCTCAAAATGA+TGG | + | chr2_2:43310135-43310154 | Msa0252310:CDS | 25.0% |
| ! | AAATGAAATCTTCCTCATTT+GGG | - | chr2_2:43310185-43310204 | None:intergenic | 25.0% |
| ! | AAAATGAAATCTTCCTCATT+TGG | - | chr2_2:43310186-43310205 | None:intergenic | 25.0% |
| ! | AAACTCATCCACAAAAAAAT+TGG | - | chr2_2:43310301-43310320 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | - | chr2_2:43310363-43310382 | None:intergenic | 25.0% |
| !! | TTTTATCAACATAAGACCTA+AGG | - | chr2_2:43310715-43310734 | None:intergenic | 25.0% |
| ! | TTAGGAACAACAATTGTATA+TGG | + | chr2_2:43311084-43311103 | Msa0252310:intron | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | + | chr2_2:43311375-43311394 | Msa0252310:intron | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | - | chr2_2:43311442-43311461 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | - | chr2_2:43311503-43311522 | None:intergenic | 25.0% |
| !!! | ATCATTTTGAGAAGAAAAAG+TGG | - | chr2_2:43310136-43310155 | None:intergenic | 25.0% |
| !!! | ACTTTTTCTTCTCAAAATGA+TGG | + | chr2_2:43310135-43310154 | Msa0252310:CDS | 25.0% |
| ! | AAATGAAATCTTCCTCATTT+GGG | - | chr2_2:43310185-43310204 | None:intergenic | 25.0% |
| ! | AAAATGAAATCTTCCTCATT+TGG | - | chr2_2:43310186-43310205 | None:intergenic | 25.0% |
| ! | AAACTCATCCACAAAAAAAT+TGG | - | chr2_2:43310301-43310320 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | - | chr2_2:43310363-43310382 | None:intergenic | 25.0% |
| !! | TTTTATCAACATAAGACCTA+AGG | - | chr2_2:43310715-43310734 | None:intergenic | 25.0% |
| ! | TTAGGAACAACAATTGTATA+TGG | + | chr2_2:43311084-43311103 | Msa0252310:intron | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | + | chr2_2:43311375-43311394 | Msa0252310:intron | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | - | chr2_2:43311442-43311461 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | - | chr2_2:43311503-43311522 | None:intergenic | 25.0% |
| !! | CAGTTTGAATAGGTTGATAA+GGG | - | chr2_2:43309936-43309955 | None:intergenic | 30.0% |
| TTGTTCATGATGTTGAAAAG+TGG | - | chr2_2:43309980-43309999 | None:intergenic | 30.0% | |
| ! | GAATGAAATTTTCCCAAATG+AGG | + | chr2_2:43310170-43310189 | Msa0252310:CDS | 30.0% |
| !!! | GAACTCAACCAATTTTTTTG+TGG | + | chr2_2:43310290-43310309 | Msa0252310:CDS | 30.0% |
| GTTCAATATGAGAAGAAAGT+TGG | + | chr2_2:43310378-43310397 | Msa0252310:CDS | 30.0% | |
| ACTTATGGAAACATTTAGCA+AGG | + | chr2_2:43310578-43310597 | Msa0252310:CDS | 30.0% | |
| CAATTGTATATGGAATGAGA+TGG | + | chr2_2:43311094-43311113 | Msa0252310:intron | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | + | chr2_2:43311189-43311208 | Msa0252310:intron | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | - | chr2_2:43311202-43311221 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | - | chr2_2:43311203-43311222 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | - | chr2_2:43311487-43311506 | None:intergenic | 30.0% |
| !! | CAGTTTGAATAGGTTGATAA+GGG | - | chr2_2:43309936-43309955 | None:intergenic | 30.0% |
| TTGTTCATGATGTTGAAAAG+TGG | - | chr2_2:43309980-43309999 | None:intergenic | 30.0% | |
| ! | GAATGAAATTTTCCCAAATG+AGG | + | chr2_2:43310170-43310189 | Msa0252310:CDS | 30.0% |
| !!! | GAACTCAACCAATTTTTTTG+TGG | + | chr2_2:43310290-43310309 | Msa0252310:CDS | 30.0% |
| GTTCAATATGAGAAGAAAGT+TGG | + | chr2_2:43310378-43310397 | Msa0252310:CDS | 30.0% | |
| ACTTATGGAAACATTTAGCA+AGG | + | chr2_2:43310578-43310597 | Msa0252310:CDS | 30.0% | |
| CAATTGTATATGGAATGAGA+TGG | + | chr2_2:43311094-43311113 | Msa0252310:intron | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | + | chr2_2:43311189-43311208 | Msa0252310:intron | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | - | chr2_2:43311202-43311221 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | - | chr2_2:43311203-43311222 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | - | chr2_2:43311487-43311506 | None:intergenic | 30.0% |
| !! | GCAGTTTGAATAGGTTGATA+AGG | - | chr2_2:43309937-43309956 | None:intergenic | 35.0% |
| !! | TTGTTGGTAGCAGTTTGAAT+AGG | - | chr2_2:43309946-43309965 | None:intergenic | 35.0% |
| GAGAAGCTTCATTGAAATAG+TGG | - | chr2_2:43310023-43310042 | None:intergenic | 35.0% | |
| GTAGTTGTTGATCTTGACAA+GGG | - | chr2_2:43310104-43310123 | None:intergenic | 35.0% | |
| AGTAGTTGTTGATCTTGACA+AGG | - | chr2_2:43310105-43310124 | None:intergenic | 35.0% | |
| !!! | AATTTTTGGTTCTGTCTCGA+AGG | - | chr2_2:43310349-43310368 | None:intergenic | 35.0% |
| !! | ATGAGAAGAAAGTTGGTGAA+AGG | + | chr2_2:43310385-43310404 | Msa0252310:CDS | 35.0% |
| AAGTTTCTTCAAGCTCAAGT+TGG | + | chr2_2:43310546-43310565 | Msa0252310:CDS | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | + | chr2_2:43310563-43310582 | Msa0252310:CDS | 35.0% | |
| ATCAACATAAGACCTAAGGA+AGG | - | chr2_2:43310711-43310730 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGTAAAAGTAGGC+AGG | - | chr2_2:43310913-43310932 | None:intergenic | 35.0% |
| CGGTTAATAAGAAGAGGAAA+TGG | + | chr2_2:43311042-43311061 | Msa0252310:intron | 35.0% | |
| AGTTTGTGTAGATCTTCACT+TGG | - | chr2_2:43311409-43311428 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | + | chr2_2:43311528-43311547 | Msa0252310:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | + | chr2_2:43311529-43311548 | Msa0252310:CDS | 35.0% | |
| !! | GCAGTTTGAATAGGTTGATA+AGG | - | chr2_2:43309937-43309956 | None:intergenic | 35.0% |
| !! | TTGTTGGTAGCAGTTTGAAT+AGG | - | chr2_2:43309946-43309965 | None:intergenic | 35.0% |
| GAGAAGCTTCATTGAAATAG+TGG | - | chr2_2:43310023-43310042 | None:intergenic | 35.0% | |
| GTAGTTGTTGATCTTGACAA+GGG | - | chr2_2:43310104-43310123 | None:intergenic | 35.0% | |
| AGTAGTTGTTGATCTTGACA+AGG | - | chr2_2:43310105-43310124 | None:intergenic | 35.0% | |
| !!! | AATTTTTGGTTCTGTCTCGA+AGG | - | chr2_2:43310349-43310368 | None:intergenic | 35.0% |
| !! | ATGAGAAGAAAGTTGGTGAA+AGG | + | chr2_2:43310385-43310404 | Msa0252310:CDS | 35.0% |
| AAGTTTCTTCAAGCTCAAGT+TGG | + | chr2_2:43310546-43310565 | Msa0252310:CDS | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | + | chr2_2:43310563-43310582 | Msa0252310:CDS | 35.0% | |
| ATCAACATAAGACCTAAGGA+AGG | - | chr2_2:43310711-43310730 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGTAAAAGTAGGC+AGG | - | chr2_2:43310913-43310932 | None:intergenic | 35.0% |
| CGGTTAATAAGAAGAGGAAA+TGG | + | chr2_2:43311042-43311061 | Msa0252310:intron | 35.0% | |
| AGTTTGTGTAGATCTTCACT+TGG | - | chr2_2:43311409-43311428 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | + | chr2_2:43311528-43311547 | Msa0252310:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | + | chr2_2:43311529-43311548 | Msa0252310:CDS | 35.0% | |
| AGTGGTGATTTCTGAGTTGT+TGG | - | chr2_2:43309962-43309981 | None:intergenic | 40.0% | |
| ! | TATAGCAGCTTTTGGCGTTT+TGG | - | chr2_2:43310231-43310250 | None:intergenic | 40.0% |
| ! | CCTCATAGTATAGCAGCTTT+TGG | - | chr2_2:43310239-43310258 | None:intergenic | 40.0% |
| CCAAAAGCTGCTATACTATG+AGG | + | chr2_2:43310236-43310255 | Msa0252310:CDS | 40.0% | |
| GAGTTCAAAAGCTCTTGTTG+TGG | - | chr2_2:43310276-43310295 | None:intergenic | 40.0% | |
| ATCTCTGCTGTGTTCATCTT+TGG | - | chr2_2:43310501-43310520 | None:intergenic | 40.0% | |
| ! | ACTGTTTTGTGTCCTTCCTT+AGG | + | chr2_2:43310696-43310715 | Msa0252310:intron | 40.0% |
| GGGAAACGGTTAATAAGAAG+AGG | + | chr2_2:43311036-43311055 | Msa0252310:intron | 40.0% | |
| GGCTATGTAACTGTTCAACA+AGG | + | chr2_2:43311115-43311134 | Msa0252310:intron | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | + | chr2_2:43311193-43311212 | Msa0252310:intron | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | - | chr2_2:43311238-43311257 | None:intergenic | 40.0% |
| TTGTGTAGATCTTCACTTGG+AGG | - | chr2_2:43311406-43311425 | None:intergenic | 40.0% | |
| AGTGGTGATTTCTGAGTTGT+TGG | - | chr2_2:43309962-43309981 | None:intergenic | 40.0% | |
| ! | TATAGCAGCTTTTGGCGTTT+TGG | - | chr2_2:43310231-43310250 | None:intergenic | 40.0% |
| ! | CCTCATAGTATAGCAGCTTT+TGG | - | chr2_2:43310239-43310258 | None:intergenic | 40.0% |
| CCAAAAGCTGCTATACTATG+AGG | + | chr2_2:43310236-43310255 | Msa0252310:CDS | 40.0% | |
| GAGTTCAAAAGCTCTTGTTG+TGG | - | chr2_2:43310276-43310295 | None:intergenic | 40.0% | |
| ATCTCTGCTGTGTTCATCTT+TGG | - | chr2_2:43310501-43310520 | None:intergenic | 40.0% | |
| ! | ACTGTTTTGTGTCCTTCCTT+AGG | + | chr2_2:43310696-43310715 | Msa0252310:intron | 40.0% |
| GGGAAACGGTTAATAAGAAG+AGG | + | chr2_2:43311036-43311055 | Msa0252310:intron | 40.0% | |
| GGCTATGTAACTGTTCAACA+AGG | + | chr2_2:43311115-43311134 | Msa0252310:intron | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | + | chr2_2:43311193-43311212 | Msa0252310:intron | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | - | chr2_2:43311238-43311257 | None:intergenic | 40.0% |
| TTGTGTAGATCTTCACTTGG+AGG | - | chr2_2:43311406-43311425 | None:intergenic | 40.0% | |
| !! | AGCTTTTGGCGTTTTGGACA+TGG | - | chr2_2:43310225-43310244 | None:intergenic | 45.0% |
| CGAAGGAAGCAAAAGGGTTA+GGG | - | chr2_2:43310332-43310351 | None:intergenic | 45.0% | |
| TCGAAGGAAGCAAAAGGGTT+AGG | - | chr2_2:43310333-43310352 | None:intergenic | 45.0% | |
| CTGTCTCGAAGGAAGCAAAA+GGG | - | chr2_2:43310338-43310357 | None:intergenic | 45.0% | |
| TCTGTCTCGAAGGAAGCAAA+AGG | - | chr2_2:43310339-43310358 | None:intergenic | 45.0% | |
| !! | TATATCGTCGCAGAGTATCG+CGG | + | chr2_2:43310410-43310429 | Msa0252310:CDS | 45.0% |
| ACTGAGAAGACACAAGAGCT+AGG | + | chr2_2:43310456-43310475 | Msa0252310:CDS | 45.0% | |
| CTGAGAAGACACAAGAGCTA+GGG | + | chr2_2:43310457-43310476 | Msa0252310:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGGTTA+GGG | + | chr2_2:43311016-43311035 | Msa0252310:intron | 45.0% | |
| AGAGAGAGAGGTTAGGGAAA+CGG | + | chr2_2:43311022-43311041 | Msa0252310:intron | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | - | chr2_2:43311239-43311258 | None:intergenic | 45.0% |
| TGTAGATCTTCACTTGGAGG+AGG | - | chr2_2:43311403-43311422 | None:intergenic | 45.0% | |
| TTCAGACCCTTAAGGATGGT+AGG | - | chr2_2:43311538-43311557 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | - | chr2_2:43311542-43311561 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | - | chr2_2:43311546-43311565 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | + | chr2_2:43311547-43311566 | Msa0252310:CDS | 45.0% |
| !! | AGCTTTTGGCGTTTTGGACA+TGG | - | chr2_2:43310225-43310244 | None:intergenic | 45.0% |
| CGAAGGAAGCAAAAGGGTTA+GGG | - | chr2_2:43310332-43310351 | None:intergenic | 45.0% | |
| TCGAAGGAAGCAAAAGGGTT+AGG | - | chr2_2:43310333-43310352 | None:intergenic | 45.0% | |
| CTGTCTCGAAGGAAGCAAAA+GGG | - | chr2_2:43310338-43310357 | None:intergenic | 45.0% | |
| TCTGTCTCGAAGGAAGCAAA+AGG | - | chr2_2:43310339-43310358 | None:intergenic | 45.0% | |
| !! | TATATCGTCGCAGAGTATCG+CGG | + | chr2_2:43310410-43310429 | Msa0252310:CDS | 45.0% |
| ACTGAGAAGACACAAGAGCT+AGG | + | chr2_2:43310456-43310475 | Msa0252310:CDS | 45.0% | |
| CTGAGAAGACACAAGAGCTA+GGG | + | chr2_2:43310457-43310476 | Msa0252310:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGGTTA+GGG | + | chr2_2:43311016-43311035 | Msa0252310:intron | 45.0% | |
| AGAGAGAGAGGTTAGGGAAA+CGG | + | chr2_2:43311022-43311041 | Msa0252310:intron | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | - | chr2_2:43311239-43311258 | None:intergenic | 45.0% |
| TGTAGATCTTCACTTGGAGG+AGG | - | chr2_2:43311403-43311422 | None:intergenic | 45.0% | |
| TTCAGACCCTTAAGGATGGT+AGG | - | chr2_2:43311538-43311557 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | - | chr2_2:43311542-43311561 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | - | chr2_2:43311546-43311565 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | + | chr2_2:43311547-43311566 | Msa0252310:CDS | 45.0% |
| GACACAAGAGCTAGGGAAGT+TGG | + | chr2_2:43310464-43310483 | Msa0252310:CDS | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | - | chr2_2:43310492-43310511 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr2_2:43310958-43310977 | Msa0252310:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGGTT+AGG | + | chr2_2:43311015-43311034 | Msa0252310:intron | 50.0% | |
| GACACAAGAGCTAGGGAAGT+TGG | + | chr2_2:43310464-43310483 | Msa0252310:CDS | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | - | chr2_2:43310492-43310511 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr2_2:43310958-43310977 | Msa0252310:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGGTT+AGG | + | chr2_2:43311015-43311034 | Msa0252310:intron | 50.0% | |
| !! | GGCGTTTTGGACATGGAAGC+TGG | - | chr2_2:43310218-43310237 | None:intergenic | 55.0% |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | + | chr2_2:43310421-43310440 | Msa0252310:CDS | 55.0% |
| ! | GAGCTAGGGAAGTTGGTTCC+TGG | + | chr2_2:43310471-43310490 | Msa0252310:CDS | 55.0% |
| ! | CTAGGGAAGTTGGTTCCTGG+TGG | + | chr2_2:43310474-43310493 | Msa0252310:CDS | 55.0% |
| !! | GGCGTTTTGGACATGGAAGC+TGG | - | chr2_2:43310218-43310237 | None:intergenic | 55.0% |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | + | chr2_2:43310421-43310440 | Msa0252310:CDS | 55.0% |
| ! | GAGCTAGGGAAGTTGGTTCC+TGG | + | chr2_2:43310471-43310490 | Msa0252310:CDS | 55.0% |
| ! | CTAGGGAAGTTGGTTCCTGG+TGG | + | chr2_2:43310474-43310493 | Msa0252310:CDS | 55.0% |
| TCGCGGCTCGAGAAAGGAGA+AGG | + | chr2_2:43310427-43310446 | Msa0252310:CDS | 60.0% | |
| TCGCGGCTCGAGAAAGGAGA+AGG | + | chr2_2:43310427-43310446 | Msa0252310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 43309877 | 43311603 | 43309877 | ID=Msa0252310;Name=Msa0252310 |
| chr2_2 | mRNA | 43309877 | 43311603 | 43309877 | ID=Msa0252310-mRNA-1;Parent=Msa0252310;Name=Msa0252310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|312 |
| chr2_2 | exon | 43309877 | 43310599 | 43309877 | ID=Msa0252310-mRNA-1:exon:13409;Parent=Msa0252310-mRNA-1 |
| chr2_2 | exon | 43311388 | 43311603 | 43311388 | ID=Msa0252310-mRNA-1:exon:13410;Parent=Msa0252310-mRNA-1 |
| chr2_2 | CDS | 43309877 | 43310599 | 43309877 | ID=Msa0252310-mRNA-1:cds;Parent=Msa0252310-mRNA-1 |
| chr2_2 | CDS | 43311388 | 43311603 | 43311388 | ID=Msa0252310-mRNA-1:cds;Parent=Msa0252310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
