AlfalfaGEDB | Msa0252790

M. sativa cultivar zhongmu-4 / Msa0252790

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252790	XP_003596142.3	98.305	59	1	0	1	59	1	59	2.87e-36	130

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252790	sp\|Q9SHE9\|LBD4_ARATH	79.661	59	12	0	1	59	1	59	7.83e-31	109

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252790	B7FJ94	98.305	59	1	0	1	59	1	59	1.37e-36	130

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0252790	TF	LOB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252790	MtrunA17_Chr2g0311601	98.305	59	1	1	59	1	59	2.64e-40	130
Msa0252790	MtrunA17_Chr4g0043421	83.929	56	9	4	59	6	61	1.41e-32	111
Msa0252790	MtrunA17_Chr5g0437571	76.471	51	12	9	59	2	52	4.65e-25	91.7
Msa0252790	MtrunA17_Chr3g0114061	76.471	51	12	9	59	4	54	4.89e-25	91.7
Msa0252790	MtrunA17_Chr3g0106101	72.917	48	13	12	59	6	53	1.34e-23	88.2
Msa0252790	MtrunA17_Chr6g0449641	72.000	50	14	10	59	6	55	1.65e-23	87.0
Msa0252790	MtrunA17_Chr2g0326041	62.069	58	22	8	65	28	85	4.84e-23	84.3
Msa0252790	MtrunA17_Chr6g0449651	72.000	50	14	10	59	64	113	8.14e-23	87.0
Msa0252790	MtrunA17_Chr3g0129071	72.000	50	14	9	58	43	92	7.19e-22	85.1
Msa0252790	MtrunA17_Chr5g0438091	70.000	50	15	9	58	35	84	9.23e-22	84.0

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252790	AT1G31320.1	79.661	59	12	0	1	59	1	59	7.95e-32	109
Msa0252790	AT2G30130.1	83.333	48	8	0	12	59	7	54	1.30e-25	94.4
Msa0252790	AT1G16530.1	73.770	61	14	2	1	59	1	61	1.34e-25	93.6
Msa0252790	AT2G40470.2	75.510	49	12	0	10	58	17	65	6.78e-23	87.4
Msa0252790	AT2G40470.1	53.947	76	29	1	9	78	41	116	9.44e-23	87.8
Msa0252790	AT2G30340.1	68.519	54	17	0	5	58	44	97	1.99e-22	87.8
Msa0252790	AT2G30340.2	68.519	54	17	0	5	58	45	98	2.00e-22	87.8
Msa0252790	AT3G27650.1	72.000	50	14	0	10	59	36	85	2.41e-22	85.1
Msa0252790	AT1G65620.1	70.000	50	15	0	10	59	6	55	2.13e-21	83.6
Msa0252790	AT1G65620.4	70.000	50	15	0	10	59	6	55	2.13e-21	83.6

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Find 16 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGATGGTGGTAGAAAACA+GGG	0.667923	2_2:-44379151	Msa0252790:CDS
AATTGGAGGAACATGAAGGA+TGG	0.564311	2_2:-44379166	None:intergenic
AATTTGTGAGGTTCATCAGC+TGG	0.500821	2_2:+44379052	None:intergenic
AGAAGCTTGCATGCAGCACA+TGG	0.590179	2_2:+44379118	None:intergenic
ATAATTATCATGTAAACGAT+TGG	0.500549	2_2:+44378914	None:intergenic
ATGTAAACGATTGGAATATC+AGG	0.364761	2_2:+44378923	None:intergenic
CAATGTGAACAAAATGTTAC+AGG	0.368869	2_2:-44378999	Msa0252790:CDS
CTGCATGCAAGCTTCTTAGA+AGG	0.457783	2_2:-44379111	Msa0252790:CDS
GAAGGATGGTGGTAGAAAAC+AGG	0.392084	2_2:-44379152	Msa0252790:CDS
GATGATAACATGATAGAGAT+AGG	0.433930	2_2:+44378947	None:intergenic

Showing 1 to 10 of 16 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAATGTGAACAAAATGTTAC+AGG	-	chr2_2:44379062-44379081	Msa0252790:CDS	30.0%
TGATAGAGATAGGAAAGATT+AGG	+	chr2_2:44379107-44379126	None:intergenic	30.0%
GATGATAACATGATAGAGAT+AGG	+	chr2_2:44379117-44379136	None:intergenic	30.0%
ATGTAAACGATTGGAATATC+AGG	+	chr2_2:44379141-44379160	None:intergenic	30.0%
GGTTCATCAGCTGGAAAATA+TGG	+	chr2_2:44379003-44379022	None:intergenic	40.0%
AATTTGTGAGGTTCATCAGC+TGG	+	chr2_2:44379012-44379031	None:intergenic	40.0%
GCTGATGAACCTCACAAATT+TGG	-	chr2_2:44379012-44379031	Msa0252790:CDS	40.0%
CTGCATGCAAGCTTCTTAGA+AGG	-	chr2_2:44378950-44378969	Msa0252790:CDS	45.0%
TGGACACTGCCAAATTTGTG+AGG	+	chr2_2:44379024-44379043	None:intergenic	45.0%
TGCTAGCCCCAAAAATCTTG+TGG	+	chr2_2:44379044-44379063	None:intergenic	45.0%

Showing 1 to 10 of 18 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	44378907	44379176	44378907	ID=Msa0252790;Name=Msa0252790
chr2_2	mRNA	44378907	44379176	44378907	ID=Msa0252790-mRNA-1;Parent=Msa0252790;Name=Msa0252790-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|89
chr2_2	exon	44378907	44379176	44378907	ID=Msa0252790-mRNA-1:exon:13633;Parent=Msa0252790-mRNA-1
chr2_2	CDS	44378907	44379176	44378907	ID=Msa0252790-mRNA-1:cds;Parent=Msa0252790-mRNA-1

Gene Sequence	>Msa0252790 ATGAAGGATGGTGGTAGAAAACAGGGTACAATGTCACCATGTGCTGCATGCAAGCTTCTTAGAAGGAGATGTGCTAAAGATTGTGTGTTTGCTCCATATTTTCCAGCTGATGAACCTCACAAATTTGGCAGTGTCCACAAGATTTTTGGGGCTAGCAATGTGAACAAAATGTTACAGGTTCAAATTAAATTCATGCACCTAATCTTTCCTATCTCTATCATGTTATCATCACCTGATATTCCAATCGTTTACATGATAATTATGTGGTAG
Protein sequence	>Msa0252790 MKDGGRKQGTMSPCAACKLLRRRCAKDCVFAPYFPADEPHKFGSVHKIFGASNVNKMLQVQIKFMHLIFPISIMLSSPDIPIVYMIIMW*