Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254670 | AES66556.2 | 70.330 | 182 | 31 | 3 | 1 | 164 | 6 | 182 | 7.09e-81 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254670 | sp|Q8GWF1|WRK38_ARATH | 48.000 | 75 | 25 | 2 | 11 | 71 | 97 | 171 | 9.35e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254670 | G7ITD8 | 70.330 | 182 | 31 | 3 | 1 | 164 | 6 | 182 | 3.39e-81 | 248 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0254670 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254670 | MtrunA17_Chr2g0315401 | 73.485 | 132 | 25 | 2 | 38 | 164 | 19 | 145 | 3.73e-62 | 189 |
| Msa0254670 | MtrunA17_Chr2g0315341 | 73.387 | 124 | 28 | 1 | 46 | 164 | 1 | 124 | 1.32e-58 | 179 |
| Msa0254670 | MtrunA17_Chr2g0315381 | 47.191 | 178 | 69 | 5 | 8 | 163 | 129 | 303 | 2.22e-43 | 146 |
| Msa0254670 | MtrunA17_Chr2g0315371 | 41.573 | 178 | 75 | 5 | 8 | 159 | 126 | 300 | 1.85e-32 | 117 |
| Msa0254670 | MtrunA17_Chr2g0315361 | 42.857 | 168 | 68 | 6 | 8 | 150 | 133 | 297 | 1.10e-31 | 115 |
| Msa0254670 | MtrunA17_Chr7g0244981 | 46.875 | 128 | 51 | 4 | 8 | 119 | 107 | 233 | 7.14e-28 | 105 |
| Msa0254670 | MtrunA17_Chr7g0244971 | 46.903 | 113 | 44 | 3 | 8 | 105 | 108 | 219 | 9.62e-27 | 102 |
| Msa0254670 | MtrunA17_Chr8g0350621 | 40.000 | 120 | 55 | 4 | 8 | 111 | 96 | 214 | 4.85e-21 | 87.0 |
| Msa0254670 | MtrunA17_Chr8g0350631 | 53.165 | 79 | 33 | 3 | 29 | 105 | 3 | 79 | 5.00e-21 | 84.3 |
| Msa0254670 | MtrunA17_Chr8g0334541 | 45.192 | 104 | 38 | 4 | 8 | 96 | 87 | 186 | 5.87e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254670 | AT5G22570.1 | 48.000 | 75 | 25 | 2 | 11 | 71 | 97 | 171 | 9.51e-16 | 73.6 |
| Msa0254670 | AT1G66560.1 | 44.118 | 68 | 25 | 1 | 23 | 77 | 103 | 170 | 2.41e-13 | 66.6 |
| Msa0254670 | AT1G66550.2 | 43.284 | 67 | 25 | 1 | 24 | 77 | 104 | 170 | 5.46e-13 | 65.5 |
| Msa0254670 | AT1G66550.1 | 43.284 | 67 | 25 | 1 | 24 | 77 | 109 | 175 | 6.11e-13 | 65.5 |
| Msa0254670 | AT1G66600.1 | 44.444 | 63 | 22 | 1 | 22 | 71 | 102 | 164 | 1.40e-12 | 64.3 |
| Msa0254670 | AT5G01900.1 | 43.939 | 66 | 24 | 1 | 18 | 70 | 105 | 170 | 2.40e-12 | 63.9 |
| Msa0254670 | AT1G80590.1 | 42.623 | 61 | 22 | 1 | 24 | 71 | 86 | 146 | 1.86e-11 | 61.2 |
Find 29 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAGATATCACATTAT+TGG | 0.160744 | 2_2:-48252570 | Msa0254670:CDS |
| ATTATGATGGCCATAGTATA+TGG | 0.342137 | 2_2:+48252610 | None:intergenic |
| AACAAATATTGTTGATCCTA+TGG | 0.354027 | 2_2:-48252282 | Msa0254670:CDS |
| TTCAATTTCATGATGGTTGT+GGG | 0.364141 | 2_2:-48252316 | Msa0254670:CDS |
| CTTCAATTTCATGATGGTTG+TGG | 0.366368 | 2_2:-48252317 | Msa0254670:CDS |
| TAGTATATGGTTCTGTATAA+TGG | 0.370420 | 2_2:+48252623 | None:intergenic |
| AACATAGAAGAAGTACTATT+AGG | 0.393005 | 2_2:+48252545 | None:intergenic |
| GTGACCAATGTGGTGATCAT+AGG | 0.394837 | 2_2:+48252436 | None:intergenic |
| ATGGGAATTGTTCTTTGCAT+TGG | 0.395390 | 2_2:+48252501 | None:intergenic |
| TGGGAATTGTTCTTTGCATT+GGG | 0.399106 | 2_2:+48252502 | None:intergenic |
| AAGATGAATTTGATTATTTG+AGG | 0.408137 | 2_2:-48252370 | Msa0254670:CDS |
| GATGGTTGTGGGCGCAATCT+TGG | 0.419474 | 2_2:-48252305 | Msa0254670:CDS |
| TTATACAGAACCATATACTA+TGG | 0.423747 | 2_2:-48252620 | Msa0254670:CDS |
| TAGGGATTAATCACTTCTAT+AGG | 0.427943 | 2_2:+48252455 | None:intergenic |
| GATATCTGAATTTAATAAAG+AGG | 0.448286 | 2_2:+48252580 | None:intergenic |
| CAATCTCTTCAATTTCATGA+TGG | 0.464117 | 2_2:-48252323 | Msa0254670:CDS |
| TGATTGAAGATGGCTATGAA+TGG | 0.519157 | 2_2:-48253151 | Msa0254670:CDS |
| GGGAGCTGTCATTGAAGCTA+AGG | 0.532528 | 2_2:+48252522 | None:intergenic |
| GGTAATCTGATGTTACTGAT+TGG | 0.556946 | 2_2:+48252411 | None:intergenic |
| TGACCAATGTGGTGATCATA+GGG | 0.567460 | 2_2:+48252437 | None:intergenic |
| TATATGGTTCTGTATAATGG+AGG | 0.591303 | 2_2:+48252626 | None:intergenic |
| CTTACCTAATTAAAATCCAT+AGG | 0.595764 | 2_2:+48252266 | None:intergenic |
| ATATGGTTCTGTATAATGGA+GGG | 0.609613 | 2_2:+48252627 | None:intergenic |
| ATGAAATTGAAGAGATTGTG+TGG | 0.612061 | 2_2:+48252328 | None:intergenic |
| CTTCATAATCACATGAGAGA+GGG | 0.620688 | 2_2:+48252390 | None:intergenic |
| ACATGTGCAGAGAATTCAAG+AGG | 0.632753 | 2_2:-48252651 | Msa0254670:CDS |
| TCTTCATAATCACATGAGAG+AGG | 0.633424 | 2_2:+48252389 | None:intergenic |
| AATCCCTATGATCACCACAT+TGG | 0.633844 | 2_2:-48252440 | Msa0254670:CDS |
| CTGATTGGTTGTGACCAATG+TGG | 0.754057 | 2_2:+48252426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAAAACTATAGTAA+TGG | + | chr2_2:48252569-48252588 | None:intergenic | 10.0% |
| !!! | TATAGATTAGTTAAAAAATA+TGG | + | chr2_2:48252948-48252967 | None:intergenic | 10.0% |
| !!! | TTATTTTAAAACTATAGTAA+TGG | + | chr2_2:48252569-48252588 | None:intergenic | 10.0% |
| !!! | TATAGATTAGTTAAAAAATA+TGG | + | chr2_2:48252948-48252967 | None:intergenic | 10.0% |
| !! | ATTACATCATAGTTATAAAA+AGG | + | chr2_2:48252628-48252647 | None:intergenic | 15.0% |
| !! | CAAAGAAATATGATATTTAT+TGG | - | chr2_2:48252702-48252721 | Msa0254670:CDS | 15.0% |
| !! | ATTACATCATAGTTATAAAA+AGG | + | chr2_2:48252628-48252647 | None:intergenic | 15.0% |
| !! | CAAAGAAATATGATATTTAT+TGG | - | chr2_2:48252702-48252721 | Msa0254670:CDS | 15.0% |
| !!! | AATTGGACATTTATTTTAGT+CGG | + | chr2_2:48252285-48252304 | None:intergenic | 20.0% |
| !! | TGTGAAAAAGAAAAAAAAGT+TGG | - | chr2_2:48252509-48252528 | Msa0254670:CDS | 20.0% |
| !! | GTGAAAAAGAAAAAAAAGTT+GGG | - | chr2_2:48252510-48252529 | Msa0254670:CDS | 20.0% |
| !!! | TCTCCATTTTCTAAAATAAA+TGG | - | chr2_2:48252537-48252556 | Msa0254670:CDS | 20.0% |
| !!! | CTTCCATTTATTTTAGAAAA+TGG | + | chr2_2:48252543-48252562 | None:intergenic | 20.0% |
| !! | ATCATAGTTATAAAAAGGTA+AGG | + | chr2_2:48252623-48252642 | None:intergenic | 20.0% |
| !! | ATTGAAGATATATATACCTT+AGG | + | chr2_2:48252849-48252868 | None:intergenic | 20.0% |
| !!! | AATGAACATGTATTTTGAAA+CGG | + | chr2_2:48252889-48252908 | None:intergenic | 20.0% |
| !! | CAATATATCATTCATATCAT+AGG | - | chr2_2:48253212-48253231 | Msa0254670:intron | 20.0% |
| !! | GATATCTGAATTTAATAAAG+AGG | + | chr2_2:48253359-48253378 | None:intergenic | 20.0% |
| !! | AAATTCAGATATCACATTAT+TGG | - | chr2_2:48253366-48253385 | Msa0254670:intron | 20.0% |
| !! | AAGATGAATTTGATTATTTG+AGG | - | chr2_2:48253566-48253585 | Msa0254670:intron | 20.0% |
| !!! | AATTGGACATTTATTTTAGT+CGG | + | chr2_2:48252285-48252304 | None:intergenic | 20.0% |
| !! | TGTGAAAAAGAAAAAAAAGT+TGG | - | chr2_2:48252509-48252528 | Msa0254670:CDS | 20.0% |
| !! | GTGAAAAAGAAAAAAAAGTT+GGG | - | chr2_2:48252510-48252529 | Msa0254670:CDS | 20.0% |
| !!! | TCTCCATTTTCTAAAATAAA+TGG | - | chr2_2:48252537-48252556 | Msa0254670:CDS | 20.0% |
| !!! | CTTCCATTTATTTTAGAAAA+TGG | + | chr2_2:48252543-48252562 | None:intergenic | 20.0% |
| !! | ATCATAGTTATAAAAAGGTA+AGG | + | chr2_2:48252623-48252642 | None:intergenic | 20.0% |
| !! | ATTGAAGATATATATACCTT+AGG | + | chr2_2:48252849-48252868 | None:intergenic | 20.0% |
| !!! | AATGAACATGTATTTTGAAA+CGG | + | chr2_2:48252889-48252908 | None:intergenic | 20.0% |
| !! | CAATATATCATTCATATCAT+AGG | - | chr2_2:48253212-48253231 | Msa0254670:intron | 20.0% |
| !! | GATATCTGAATTTAATAAAG+AGG | + | chr2_2:48253359-48253378 | None:intergenic | 20.0% |
| !! | AAATTCAGATATCACATTAT+TGG | - | chr2_2:48253366-48253385 | Msa0254670:intron | 20.0% |
| !! | AAGATGAATTTGATTATTTG+AGG | - | chr2_2:48253566-48253585 | Msa0254670:intron | 20.0% |
| ! | AAATGTCCAATTCAAAAACA+TGG | - | chr2_2:48252293-48252312 | Msa0254670:CDS | 25.0% |
| ! | CCACAATAGACTTTAATTAA+CGG | - | chr2_2:48252483-48252502 | Msa0254670:CDS | 25.0% |
| ! | CACAATAGACTTTAATTAAC+GGG | - | chr2_2:48252484-48252503 | Msa0254670:CDS | 25.0% |
| ! | ACAATAGACTTTAATTAACG+GGG | - | chr2_2:48252485-48252504 | Msa0254670:CDS | 25.0% |
| ! | ATACGATATAAATGCACAAT+AGG | - | chr2_2:48252591-48252610 | Msa0254670:CDS | 25.0% |
| ! | TAATCAATGCAAAATACCTA+AGG | - | chr2_2:48252830-48252849 | Msa0254670:intron | 25.0% |
| !! | TAGTATATGGTTCTGTATAA+TGG | + | chr2_2:48253316-48253335 | None:intergenic | 25.0% |
| ! | TTATACAGAACCATATACTA+TGG | - | chr2_2:48253316-48253335 | Msa0254670:intron | 25.0% |
| !!! | AACATAGAAGAAGTACTATT+AGG | + | chr2_2:48253394-48253413 | None:intergenic | 25.0% |
| ! | AACAAATATTGTTGATCCTA+TGG | - | chr2_2:48253654-48253673 | Msa0254670:intron | 25.0% |
| ! | AAATGTCCAATTCAAAAACA+TGG | - | chr2_2:48252293-48252312 | Msa0254670:CDS | 25.0% |
| ! | CCACAATAGACTTTAATTAA+CGG | - | chr2_2:48252483-48252502 | Msa0254670:CDS | 25.0% |
| ! | CACAATAGACTTTAATTAAC+GGG | - | chr2_2:48252484-48252503 | Msa0254670:CDS | 25.0% |
| ! | ACAATAGACTTTAATTAACG+GGG | - | chr2_2:48252485-48252504 | Msa0254670:CDS | 25.0% |
| ! | ATACGATATAAATGCACAAT+AGG | - | chr2_2:48252591-48252610 | Msa0254670:CDS | 25.0% |
| ! | TAATCAATGCAAAATACCTA+AGG | - | chr2_2:48252830-48252849 | Msa0254670:intron | 25.0% |
| !! | TAGTATATGGTTCTGTATAA+TGG | + | chr2_2:48253316-48253335 | None:intergenic | 25.0% |
| ! | TTATACAGAACCATATACTA+TGG | - | chr2_2:48253316-48253335 | Msa0254670:intron | 25.0% |
| !!! | AACATAGAAGAAGTACTATT+AGG | + | chr2_2:48253394-48253413 | None:intergenic | 25.0% |
| ! | AACAAATATTGTTGATCCTA+TGG | - | chr2_2:48253654-48253673 | Msa0254670:intron | 25.0% |
| AATTCAAAAACATGGTCCTT+CGG | - | chr2_2:48252301-48252320 | Msa0254670:CDS | 30.0% | |
| AGACGTACACATAAAACTTT+CGG | + | chr2_2:48252328-48252347 | None:intergenic | 30.0% | |
| !! | AAAGTTTTATGTGTACGTCT+TGG | - | chr2_2:48252328-48252347 | Msa0254670:CDS | 30.0% |
| CCGTTAATTAAAGTCTATTG+TGG | + | chr2_2:48252486-48252505 | None:intergenic | 30.0% | |
| !!! | AGCTCAATTTTGATTGAAGA+TGG | - | chr2_2:48252775-48252794 | Msa0254670:intron | 30.0% |
| !!! | AACATGTATTTTGAAACGGA+GGG | + | chr2_2:48252885-48252904 | None:intergenic | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | - | chr2_2:48253109-48253128 | Msa0254670:intron | 30.0% |
| ! | ATATGGTTCTGTATAATGGA+GGG | + | chr2_2:48253312-48253331 | None:intergenic | 30.0% |
| ! | TATATGGTTCTGTATAATGG+AGG | + | chr2_2:48253313-48253332 | None:intergenic | 30.0% |
| ATTATGATGGCCATAGTATA+TGG | + | chr2_2:48253329-48253348 | None:intergenic | 30.0% | |
| ! | AAGAGGTTTTGCAATTATGA+TGG | + | chr2_2:48253342-48253361 | None:intergenic | 30.0% |
| ! | GTTTTGTGGATGATGAAAAT+GGG | + | chr2_2:48253456-48253475 | None:intergenic | 30.0% |
| !! | AGTTTTGTGGATGATGAAAA+TGG | + | chr2_2:48253457-48253476 | None:intergenic | 30.0% |
| ! | ATTTTCATCATCCACAAAAC+TGG | - | chr2_2:48253456-48253475 | Msa0254670:intron | 30.0% |
| TAGGGATTAATCACTTCTAT+AGG | + | chr2_2:48253484-48253503 | None:intergenic | 30.0% | |
| ATGAAATTGAAGAGATTGTG+TGG | + | chr2_2:48253611-48253630 | None:intergenic | 30.0% | |
| CAATCTCTTCAATTTCATGA+TGG | - | chr2_2:48253613-48253632 | Msa0254670:intron | 30.0% | |
| TTCAATTTCATGATGGTTGT+GGG | - | chr2_2:48253620-48253639 | Msa0254670:intron | 30.0% | |
| AATTCAAAAACATGGTCCTT+CGG | - | chr2_2:48252301-48252320 | Msa0254670:CDS | 30.0% | |
| AGACGTACACATAAAACTTT+CGG | + | chr2_2:48252328-48252347 | None:intergenic | 30.0% | |
| !! | AAAGTTTTATGTGTACGTCT+TGG | - | chr2_2:48252328-48252347 | Msa0254670:CDS | 30.0% |
| CCGTTAATTAAAGTCTATTG+TGG | + | chr2_2:48252486-48252505 | None:intergenic | 30.0% | |
| !!! | AGCTCAATTTTGATTGAAGA+TGG | - | chr2_2:48252775-48252794 | Msa0254670:intron | 30.0% |
| !!! | AACATGTATTTTGAAACGGA+GGG | + | chr2_2:48252885-48252904 | None:intergenic | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | - | chr2_2:48253109-48253128 | Msa0254670:intron | 30.0% |
| ! | ATATGGTTCTGTATAATGGA+GGG | + | chr2_2:48253312-48253331 | None:intergenic | 30.0% |
| ! | TATATGGTTCTGTATAATGG+AGG | + | chr2_2:48253313-48253332 | None:intergenic | 30.0% |
| ATTATGATGGCCATAGTATA+TGG | + | chr2_2:48253329-48253348 | None:intergenic | 30.0% | |
| ! | AAGAGGTTTTGCAATTATGA+TGG | + | chr2_2:48253342-48253361 | None:intergenic | 30.0% |
| ! | GTTTTGTGGATGATGAAAAT+GGG | + | chr2_2:48253456-48253475 | None:intergenic | 30.0% |
| !! | AGTTTTGTGGATGATGAAAA+TGG | + | chr2_2:48253457-48253476 | None:intergenic | 30.0% |
| ! | ATTTTCATCATCCACAAAAC+TGG | - | chr2_2:48253456-48253475 | Msa0254670:intron | 30.0% |
| TAGGGATTAATCACTTCTAT+AGG | + | chr2_2:48253484-48253503 | None:intergenic | 30.0% | |
| ATGAAATTGAAGAGATTGTG+TGG | + | chr2_2:48253611-48253630 | None:intergenic | 30.0% | |
| CAATCTCTTCAATTTCATGA+TGG | - | chr2_2:48253613-48253632 | Msa0254670:intron | 30.0% | |
| TTCAATTTCATGATGGTTGT+GGG | - | chr2_2:48253620-48253639 | Msa0254670:intron | 30.0% | |
| !! | GAAGGACCATGTTTTTGAAT+TGG | + | chr2_2:48252302-48252321 | None:intergenic | 35.0% |
| GACGTACACATAAAACTTTC+GGG | + | chr2_2:48252327-48252346 | None:intergenic | 35.0% | |
| TAAGATCAAAAACACGCACT+TGG | - | chr2_2:48252743-48252762 | Msa0254670:intron | 35.0% | |
| AAGATCAAAAACACGCACTT+GGG | - | chr2_2:48252744-48252763 | Msa0254670:intron | 35.0% | |
| TGATTGAAGATGGCTATGAA+TGG | - | chr2_2:48252785-48252804 | Msa0254670:intron | 35.0% | |
| !!! | GAACATGTATTTTGAAACGG+AGG | + | chr2_2:48252886-48252905 | None:intergenic | 35.0% |
| TGGGAATTGTTCTTTGCATT+GGG | + | chr2_2:48253437-48253456 | None:intergenic | 35.0% | |
| ATGGGAATTGTTCTTTGCAT+TGG | + | chr2_2:48253438-48253457 | None:intergenic | 35.0% | |
| GGTAATCTGATGTTACTGAT+TGG | + | chr2_2:48253528-48253547 | None:intergenic | 35.0% | |
| CTTCATAATCACATGAGAGA+GGG | + | chr2_2:48253549-48253568 | None:intergenic | 35.0% | |
| TCTTCATAATCACATGAGAG+AGG | + | chr2_2:48253550-48253569 | None:intergenic | 35.0% | |
| CTTCAATTTCATGATGGTTG+TGG | - | chr2_2:48253619-48253638 | Msa0254670:intron | 35.0% | |
| !! | GAAGGACCATGTTTTTGAAT+TGG | + | chr2_2:48252302-48252321 | None:intergenic | 35.0% |
| GACGTACACATAAAACTTTC+GGG | + | chr2_2:48252327-48252346 | None:intergenic | 35.0% | |
| TAAGATCAAAAACACGCACT+TGG | - | chr2_2:48252743-48252762 | Msa0254670:intron | 35.0% | |
| AAGATCAAAAACACGCACTT+GGG | - | chr2_2:48252744-48252763 | Msa0254670:intron | 35.0% | |
| TGATTGAAGATGGCTATGAA+TGG | - | chr2_2:48252785-48252804 | Msa0254670:intron | 35.0% | |
| !!! | GAACATGTATTTTGAAACGG+AGG | + | chr2_2:48252886-48252905 | None:intergenic | 35.0% |
| TGGGAATTGTTCTTTGCATT+GGG | + | chr2_2:48253437-48253456 | None:intergenic | 35.0% | |
| ATGGGAATTGTTCTTTGCAT+TGG | + | chr2_2:48253438-48253457 | None:intergenic | 35.0% | |
| GGTAATCTGATGTTACTGAT+TGG | + | chr2_2:48253528-48253547 | None:intergenic | 35.0% | |
| CTTCATAATCACATGAGAGA+GGG | + | chr2_2:48253549-48253568 | None:intergenic | 35.0% | |
| TCTTCATAATCACATGAGAG+AGG | + | chr2_2:48253550-48253569 | None:intergenic | 35.0% | |
| CTTCAATTTCATGATGGTTG+TGG | - | chr2_2:48253619-48253638 | Msa0254670:intron | 35.0% | |
| TTATGTGTACGTCTTGGCAT+AGG | - | chr2_2:48252334-48252353 | Msa0254670:CDS | 40.0% | |
| GGCTATGAATGGAGAAAGTA+TGG | - | chr2_2:48252796-48252815 | Msa0254670:intron | 40.0% | |
| ACATGTGCAGAGAATTCAAG+AGG | - | chr2_2:48253285-48253304 | Msa0254670:intron | 40.0% | |
| ! | TTCTATAGGCTCCAGTTTTG+TGG | + | chr2_2:48253470-48253489 | None:intergenic | 40.0% |
| AATCCCTATGATCACCACAT+TGG | - | chr2_2:48253496-48253515 | Msa0254670:intron | 40.0% | |
| TGACCAATGTGGTGATCATA+GGG | + | chr2_2:48253502-48253521 | None:intergenic | 40.0% | |
| TTATGTGTACGTCTTGGCAT+AGG | - | chr2_2:48252334-48252353 | Msa0254670:CDS | 40.0% | |
| GGCTATGAATGGAGAAAGTA+TGG | - | chr2_2:48252796-48252815 | Msa0254670:intron | 40.0% | |
| ACATGTGCAGAGAATTCAAG+AGG | - | chr2_2:48253285-48253304 | Msa0254670:intron | 40.0% | |
| ! | TTCTATAGGCTCCAGTTTTG+TGG | + | chr2_2:48253470-48253489 | None:intergenic | 40.0% |
| AATCCCTATGATCACCACAT+TGG | - | chr2_2:48253496-48253515 | Msa0254670:intron | 40.0% | |
| TGACCAATGTGGTGATCATA+GGG | + | chr2_2:48253502-48253521 | None:intergenic | 40.0% | |
| ACATAAAACTTTCGGGCCGA+AGG | + | chr2_2:48252320-48252339 | None:intergenic | 45.0% | |
| AAAAACACGCACTTGGGAGA+AGG | - | chr2_2:48252750-48252769 | Msa0254670:intron | 45.0% | |
| GTGCATTAGCATGTGTGAAG+TGG | - | chr2_2:48253082-48253101 | Msa0254670:intron | 45.0% | |
| CATGTGTGAAGTGGTTGACT+TGG | - | chr2_2:48253091-48253110 | Msa0254670:intron | 45.0% | |
| GTGACCAATGTGGTGATCAT+AGG | + | chr2_2:48253503-48253522 | None:intergenic | 45.0% | |
| ! | CTGATTGGTTGTGACCAATG+TGG | + | chr2_2:48253513-48253532 | None:intergenic | 45.0% |
| ACATAAAACTTTCGGGCCGA+AGG | + | chr2_2:48252320-48252339 | None:intergenic | 45.0% | |
| AAAAACACGCACTTGGGAGA+AGG | - | chr2_2:48252750-48252769 | Msa0254670:intron | 45.0% | |
| GTGCATTAGCATGTGTGAAG+TGG | - | chr2_2:48253082-48253101 | Msa0254670:intron | 45.0% | |
| CATGTGTGAAGTGGTTGACT+TGG | - | chr2_2:48253091-48253110 | Msa0254670:intron | 45.0% | |
| GTGACCAATGTGGTGATCAT+AGG | + | chr2_2:48253503-48253522 | None:intergenic | 45.0% | |
| ! | CTGATTGGTTGTGACCAATG+TGG | + | chr2_2:48253513-48253532 | None:intergenic | 45.0% |
| CGTCTTGGCATAGGATGTGT+CGG | - | chr2_2:48252343-48252362 | Msa0254670:CDS | 50.0% | |
| GGGAGCTGTCATTGAAGCTA+AGG | + | chr2_2:48253417-48253436 | None:intergenic | 50.0% | |
| CGTCTTGGCATAGGATGTGT+CGG | - | chr2_2:48252343-48252362 | Msa0254670:CDS | 50.0% | |
| GGGAGCTGTCATTGAAGCTA+AGG | + | chr2_2:48253417-48253436 | None:intergenic | 50.0% | |
| GATGGTTGTGGGCGCAATCT+TGG | - | chr2_2:48253631-48253650 | Msa0254670:intron | 55.0% | |
| GATGGTTGTGGGCGCAATCT+TGG | - | chr2_2:48253631-48253650 | Msa0254670:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 48252271 | 48253687 | 48252271 | ID=Msa0254670;Name=Msa0254670 |
| chr2_2 | mRNA | 48252271 | 48253687 | 48252271 | ID=Msa0254670-mRNA-1;Parent=Msa0254670;Name=Msa0254670-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.66|1|1|3|0|180 |
| chr2_2 | exon | 48253684 | 48253687 | 48253684 | ID=Msa0254670-mRNA-1:exon:14567;Parent=Msa0254670-mRNA-1 |
| chr2_2 | exon | 48253146 | 48253230 | 48253146 | ID=Msa0254670-mRNA-1:exon:14566;Parent=Msa0254670-mRNA-1 |
| chr2_2 | exon | 48252271 | 48252724 | 48252271 | ID=Msa0254670-mRNA-1:exon:14565;Parent=Msa0254670-mRNA-1 |
| chr2_2 | CDS | 48253684 | 48253687 | 48253684 | ID=Msa0254670-mRNA-1:cds;Parent=Msa0254670-mRNA-1 |
| chr2_2 | CDS | 48253146 | 48253230 | 48253146 | ID=Msa0254670-mRNA-1:cds;Parent=Msa0254670-mRNA-1 |
| chr2_2 | CDS | 48252271 | 48252724 | 48252271 | ID=Msa0254670-mRNA-1:cds;Parent=Msa0254670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
