Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0254730 | AES66556.2 | 92.391 | 184 | 9 | 1 | 1 | 184 | 5 | 183 | 1.55e-122 | 353 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0254730 | sp|Q8GWF1|WRK38_ARATH | 41.781 | 146 | 72 | 6 | 14 | 152 | 99 | 238 | 5.86e-23 | 95.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0254730 | G7ITD8 | 92.391 | 184 | 9 | 1 | 1 | 184 | 5 | 183 | 7.42e-123 | 353 |
Gene ID | Type | Classification |
---|---|---|
Msa0254730 | TF | WRKY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0254730 | MtrunA17_Chr2g0315401 | 90.226 | 133 | 8 | 1 | 52 | 184 | 19 | 146 | 8.83e-86 | 249 |
Msa0254730 | MtrunA17_Chr2g0315341 | 89.600 | 125 | 13 | 0 | 60 | 184 | 1 | 125 | 2.28e-79 | 232 |
Msa0254730 | MtrunA17_Chr2g0315381 | 49.444 | 180 | 84 | 4 | 9 | 184 | 129 | 305 | 3.13e-52 | 169 |
Msa0254730 | MtrunA17_Chr2g0315371 | 46.893 | 177 | 83 | 4 | 9 | 177 | 126 | 299 | 2.30e-44 | 149 |
Msa0254730 | MtrunA17_Chr2g0315361 | 49.405 | 168 | 75 | 5 | 9 | 169 | 133 | 297 | 3.02e-44 | 148 |
Msa0254730 | MtrunA17_Chr7g0244981 | 43.860 | 171 | 73 | 5 | 9 | 175 | 107 | 258 | 2.94e-35 | 124 |
Msa0254730 | MtrunA17_Chr7g0244971 | 54.369 | 103 | 46 | 1 | 9 | 111 | 108 | 209 | 3.59e-35 | 125 |
Msa0254730 | MtrunA17_Chr8g0350621 | 41.606 | 137 | 72 | 4 | 9 | 138 | 96 | 231 | 3.69e-30 | 111 |
Msa0254730 | MtrunA17_Chr8g0334541 | 47.706 | 109 | 52 | 2 | 9 | 116 | 88 | 192 | 5.13e-28 | 105 |
Msa0254730 | MtrunA17_Chr8g0350631 | 49.425 | 87 | 29 | 3 | 45 | 131 | 5 | 76 | 1.68e-20 | 83.2 |
Msa0254730 | MtrunA17_Chr3g0128671 | 50.000 | 68 | 34 | 0 | 20 | 87 | 123 | 190 | 1.98e-19 | 83.6 |
Msa0254730 | MtrunA17_Chr8g0387981 | 53.333 | 60 | 28 | 0 | 24 | 83 | 132 | 191 | 1.79e-18 | 81.6 |
Msa0254730 | MtrunA17_Chr5g0428351 | 36.885 | 122 | 67 | 3 | 9 | 126 | 169 | 284 | 2.85e-18 | 80.5 |
Msa0254730 | MtrunA17_Chr7g0275531 | 49.180 | 61 | 31 | 0 | 23 | 83 | 117 | 177 | 5.20e-17 | 77.0 |
Msa0254730 | MtrunA17_Chr3g0126391 | 49.180 | 61 | 31 | 0 | 23 | 83 | 132 | 192 | 6.48e-17 | 77.0 |
Msa0254730 | MtrunA17_Chr8g0347251 | 46.875 | 64 | 34 | 0 | 23 | 86 | 135 | 198 | 1.05e-15 | 73.6 |
Msa0254730 | MtrunA17_Chr4g0051881 | 45.570 | 79 | 38 | 2 | 23 | 99 | 177 | 252 | 2.16e-15 | 72.8 |
Msa0254730 | MtrunA17_Chr4g0042831 | 35.514 | 107 | 66 | 1 | 2 | 108 | 256 | 359 | 2.51e-15 | 72.8 |
Msa0254730 | MtrunA17_Chr8g0383351 | 48.333 | 60 | 28 | 1 | 22 | 81 | 158 | 214 | 1.67e-14 | 68.9 |
Msa0254730 | MtrunA17_Chr5g0418191 | 35.000 | 120 | 66 | 4 | 4 | 115 | 300 | 415 | 6.50e-14 | 68.9 |
Msa0254730 | MtrunA17_Chr5g0443131 | 47.761 | 67 | 30 | 2 | 23 | 87 | 156 | 219 | 1.04e-13 | 67.8 |
Msa0254730 | MtrunA17_Chr7g0270191 | 50.847 | 59 | 26 | 1 | 23 | 81 | 144 | 199 | 1.35e-13 | 67.4 |
Msa0254730 | MtrunA17_Chr3g0129361 | 46.667 | 60 | 29 | 1 | 22 | 81 | 142 | 198 | 1.61e-13 | 66.2 |
Msa0254730 | MtrunA17_Chr5g0418781 | 49.153 | 59 | 27 | 1 | 23 | 81 | 123 | 178 | 2.64e-13 | 66.2 |
Msa0254730 | MtrunA17_Chr7g0224801 | 46.667 | 60 | 29 | 1 | 22 | 81 | 91 | 147 | 2.84e-13 | 64.7 |
Msa0254730 | MtrunA17_Chr7g0263531 | 41.860 | 86 | 46 | 2 | 18 | 103 | 356 | 437 | 4.75e-13 | 66.2 |
Msa0254730 | MtrunA17_Chr1g0194481 | 49.153 | 59 | 27 | 1 | 23 | 81 | 157 | 212 | 5.87e-13 | 65.9 |
Msa0254730 | MtrunA17_Chr8g0335811 | 45.902 | 61 | 30 | 1 | 22 | 82 | 152 | 209 | 8.53e-13 | 64.3 |
Msa0254730 | MtrunA17_Chr7g0218081 | 38.961 | 77 | 44 | 1 | 6 | 82 | 392 | 465 | 1.09e-12 | 65.5 |
Msa0254730 | MtrunA17_Chr2g0333851 | 42.029 | 69 | 38 | 1 | 14 | 82 | 159 | 225 | 1.62e-12 | 64.3 |
Msa0254730 | MtrunA17_Chr4g0068541 | 40.541 | 74 | 40 | 2 | 9 | 81 | 192 | 262 | 2.07e-12 | 64.7 |
Msa0254730 | MtrunA17_Chr7g0248721 | 47.541 | 61 | 28 | 2 | 22 | 82 | 139 | 195 | 3.15e-12 | 62.8 |
Msa0254730 | MtrunA17_Chr5g0431811 | 43.750 | 64 | 36 | 0 | 24 | 87 | 672 | 735 | 3.88e-12 | 63.9 |
Msa0254730 | MtrunA17_Chr5g0401821 | 43.056 | 72 | 39 | 1 | 25 | 96 | 200 | 269 | 4.38e-12 | 62.8 |
Msa0254730 | MtrunA17_Chr5g0445311 | 37.349 | 83 | 48 | 2 | 1 | 82 | 340 | 419 | 1.12e-11 | 62.4 |
Msa0254730 | MtrunA17_Chr3g0129321 | 45.902 | 61 | 30 | 1 | 22 | 82 | 116 | 173 | 1.12e-11 | 60.8 |
Msa0254730 | MtrunA17_Chr2g0294231 | 45.763 | 59 | 29 | 1 | 23 | 81 | 202 | 257 | 1.61e-11 | 62.0 |
Msa0254730 | MtrunA17_Chr1g0150281 | 39.241 | 79 | 42 | 2 | 4 | 82 | 124 | 196 | 1.74e-11 | 61.2 |
Msa0254730 | MtrunA17_Chr3g0101131 | 44.262 | 61 | 31 | 1 | 22 | 82 | 413 | 470 | 1.84e-11 | 62.0 |
Msa0254730 | MtrunA17_Chr7g0238921 | 50.000 | 60 | 27 | 1 | 22 | 81 | 122 | 178 | 2.56e-11 | 61.2 |
Msa0254730 | MtrunA17_Chr4g0071521 | 39.726 | 73 | 42 | 1 | 25 | 97 | 246 | 316 | 3.88e-11 | 60.5 |
Msa0254730 | MtrunA17_Chr1g0147881 | 47.368 | 57 | 28 | 1 | 25 | 81 | 263 | 317 | 7.82e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0254730 | AT5G22570.1 | 41.781 | 146 | 72 | 6 | 14 | 152 | 99 | 238 | 5.96e-24 | 95.9 |
Msa0254730 | AT1G66560.1 | 52.941 | 68 | 32 | 0 | 24 | 91 | 103 | 170 | 2.83e-21 | 87.8 |
Msa0254730 | AT5G01900.1 | 54.545 | 66 | 30 | 0 | 19 | 84 | 105 | 170 | 3.38e-21 | 87.8 |
Msa0254730 | AT1G66600.1 | 55.556 | 63 | 28 | 0 | 23 | 85 | 102 | 164 | 8.11e-21 | 86.7 |
Msa0254730 | AT1G66550.2 | 50.746 | 67 | 33 | 0 | 25 | 91 | 104 | 170 | 4.15e-20 | 84.7 |
Msa0254730 | AT1G66550.1 | 50.746 | 67 | 33 | 0 | 25 | 91 | 109 | 175 | 5.16e-20 | 84.7 |
Msa0254730 | AT3G56400.1 | 44.872 | 78 | 40 | 1 | 9 | 86 | 108 | 182 | 9.85e-20 | 84.7 |
Msa0254730 | AT1G80590.1 | 52.459 | 61 | 29 | 0 | 25 | 85 | 86 | 146 | 5.99e-19 | 81.3 |
Msa0254730 | AT5G24110.1 | 46.341 | 82 | 39 | 2 | 23 | 100 | 112 | 192 | 1.35e-17 | 79.0 |
Msa0254730 | AT4G11070.2 | 36.111 | 108 | 65 | 2 | 24 | 127 | 109 | 216 | 1.05e-16 | 76.3 |
Msa0254730 | AT4G11070.1 | 36.111 | 108 | 65 | 2 | 24 | 127 | 141 | 248 | 1.67e-16 | 75.9 |
Msa0254730 | AT2G46400.1 | 47.541 | 61 | 32 | 0 | 23 | 83 | 103 | 163 | 1.86e-15 | 72.8 |
Msa0254730 | AT2G40750.1 | 42.500 | 80 | 43 | 1 | 4 | 83 | 135 | 211 | 2.70e-15 | 72.8 |
Msa0254730 | AT4G23810.1 | 43.284 | 67 | 38 | 0 | 24 | 90 | 158 | 224 | 3.30e-15 | 72.4 |
Msa0254730 | AT2G40740.1 | 45.000 | 60 | 33 | 0 | 24 | 83 | 173 | 232 | 5.10e-15 | 71.6 |
Msa0254730 | AT2G40740.3 | 45.000 | 60 | 33 | 0 | 24 | 83 | 182 | 241 | 6.54e-15 | 71.6 |
Msa0254730 | AT1G64000.1 | 49.180 | 61 | 28 | 1 | 22 | 82 | 112 | 169 | 1.66e-14 | 68.9 |
Msa0254730 | AT2G03340.1 | 42.308 | 78 | 42 | 1 | 22 | 99 | 413 | 487 | 5.37e-14 | 69.7 |
Msa0254730 | AT2G37260.1 | 50.000 | 60 | 27 | 1 | 23 | 82 | 348 | 404 | 8.42e-14 | 68.9 |
Msa0254730 | AT2G37260.3 | 50.000 | 60 | 27 | 1 | 23 | 82 | 268 | 324 | 9.82e-14 | 68.6 |
Msa0254730 | AT2G37260.2 | 50.000 | 60 | 27 | 1 | 23 | 82 | 266 | 322 | 1.04e-13 | 68.6 |
Msa0254730 | AT5G41570.1 | 47.541 | 61 | 29 | 1 | 22 | 82 | 96 | 153 | 1.64e-13 | 65.9 |
Msa0254730 | AT4G18170.1 | 50.000 | 60 | 27 | 1 | 23 | 82 | 171 | 227 | 2.23e-13 | 67.4 |
Msa0254730 | AT1G29860.1 | 50.000 | 60 | 27 | 1 | 23 | 82 | 135 | 191 | 3.18e-13 | 66.6 |
Msa0254730 | AT1G69310.4 | 47.458 | 59 | 28 | 1 | 23 | 81 | 146 | 201 | 3.48e-13 | 66.6 |
Msa0254730 | AT1G69310.2 | 47.458 | 59 | 28 | 1 | 23 | 81 | 146 | 201 | 3.48e-13 | 66.6 |
Msa0254730 | AT1G69310.1 | 47.458 | 59 | 28 | 1 | 23 | 81 | 146 | 201 | 3.48e-13 | 66.6 |
Msa0254730 | AT2G46130.1 | 43.939 | 66 | 34 | 1 | 17 | 82 | 23 | 85 | 3.49e-13 | 63.2 |
Msa0254730 | AT2G44745.1 | 45.902 | 61 | 30 | 1 | 22 | 82 | 143 | 200 | 6.83e-13 | 64.7 |
Msa0254730 | AT4G31800.2 | 43.478 | 69 | 37 | 1 | 14 | 82 | 101 | 167 | 7.60e-13 | 65.1 |
Msa0254730 | AT4G39410.1 | 45.000 | 60 | 30 | 1 | 22 | 81 | 221 | 277 | 9.16e-13 | 65.5 |
Msa0254730 | AT1G13960.1 | 47.541 | 61 | 29 | 1 | 22 | 82 | 407 | 464 | 1.08e-12 | 65.9 |
Msa0254730 | AT5G46350.1 | 48.333 | 60 | 28 | 1 | 23 | 82 | 182 | 238 | 1.15e-12 | 65.5 |
Msa0254730 | AT4G31800.1 | 43.478 | 69 | 37 | 1 | 14 | 82 | 166 | 232 | 1.22e-12 | 65.1 |
Msa0254730 | AT5G13080.1 | 47.541 | 61 | 29 | 1 | 22 | 82 | 65 | 122 | 1.24e-12 | 62.8 |
Msa0254730 | AT5G49520.1 | 47.458 | 59 | 28 | 1 | 23 | 81 | 220 | 275 | 1.25e-12 | 65.5 |
Msa0254730 | AT1G13960.2 | 47.541 | 61 | 29 | 1 | 22 | 82 | 254 | 311 | 3.14e-12 | 64.3 |
Msa0254730 | AT2G47260.1 | 43.662 | 71 | 37 | 1 | 23 | 93 | 173 | 240 | 4.17e-12 | 63.9 |
Msa0254730 | AT2G25000.2 | 44.615 | 65 | 34 | 1 | 18 | 82 | 97 | 159 | 4.58e-12 | 62.8 |
Msa0254730 | AT2G25000.4 | 44.615 | 65 | 34 | 1 | 18 | 82 | 97 | 159 | 4.58e-12 | 62.8 |
Msa0254730 | AT2G25000.3 | 44.615 | 65 | 34 | 1 | 18 | 82 | 119 | 181 | 5.45e-12 | 62.8 |
Msa0254730 | AT2G04880.2 | 47.541 | 61 | 29 | 1 | 22 | 82 | 281 | 338 | 6.22e-12 | 63.5 |
Msa0254730 | AT2G25000.1 | 44.615 | 65 | 34 | 1 | 18 | 82 | 140 | 202 | 6.60e-12 | 62.8 |
Msa0254730 | AT2G04880.1 | 47.541 | 61 | 29 | 1 | 22 | 82 | 305 | 362 | 8.03e-12 | 63.2 |
Msa0254730 | AT5G26170.1 | 40.984 | 61 | 33 | 1 | 22 | 82 | 111 | 168 | 8.58e-12 | 61.2 |
Msa0254730 | AT5G45260.1 | 44.828 | 58 | 32 | 0 | 25 | 82 | 1209 | 1266 | 1.26e-11 | 62.8 |
Msa0254730 | AT3G01080.2 | 38.961 | 77 | 44 | 1 | 6 | 82 | 326 | 399 | 3.08e-11 | 61.6 |
Msa0254730 | AT3G01080.1 | 37.975 | 79 | 46 | 1 | 4 | 82 | 286 | 361 | 4.12e-11 | 61.2 |
Msa0254730 | AT2G30590.1 | 50.000 | 58 | 27 | 1 | 25 | 82 | 314 | 369 | 6.23e-11 | 60.5 |
Msa0254730 | AT3G01970.1 | 44.262 | 61 | 31 | 1 | 22 | 82 | 63 | 120 | 9.48e-11 | 57.8 |
Find 33 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATTCAGATATCACATTAT+TGG | 0.160744 | 2_2:+48315044 | Msa0254730:CDS |
AACTTGAATTTGATAATTTC+AGG | 0.268527 | 2_2:+48315259 | Msa0254730:CDS |
AACATAGAAGAAGTATTATT+AGG | 0.316397 | 2_2:-48315069 | None:intergenic |
ATACAAGACTTACCTAATTT+AGG | 0.329259 | 2_2:-48315339 | None:intergenic |
TTGATCAATTTGATTATGAT+AGG | 0.331740 | 2_2:-48315193 | None:intergenic |
GGCTATGAATGGAGAAAGTA+TGG | 0.339396 | 2_2:+48314736 | Msa0254730:CDS |
TTATACAGAACTATATATTA+TGG | 0.345556 | 2_2:+48314994 | Msa0254730:CDS |
TAATATATAGTTCTGTATAA+TGG | 0.379983 | 2_2:-48314991 | None:intergenic |
CAGGGTATTGTTCTTTGACT+TGG | 0.384613 | 2_2:-48315113 | None:intergenic |
GGTAGTCTGATGATGTTAAT+TGG | 0.385184 | 2_2:-48315218 | None:intergenic |
ATCATGAAATGGAACAGATT+TGG | 0.391587 | 2_2:-48315304 | None:intergenic |
TAAGATCAAAAGCACTTACT+TGG | 0.396882 | 2_2:+48314683 | Msa0254730:CDS |
GGTATTGTTCTTTGACTTGG+AGG | 0.404519 | 2_2:-48315110 | None:intergenic |
CACTAAAATCCATCATGAAA+TGG | 0.409766 | 2_2:-48315315 | None:intergenic |
TAGGGATTAATAACATCTAT+AGG | 0.441096 | 2_2:-48315174 | None:intergenic |
AGTTTATAGTCACATGAGAA+AGG | 0.462808 | 2_2:-48315240 | None:intergenic |
TAAATTAGGTAAGTCTTGTA+TGG | 0.489366 | 2_2:+48315341 | Msa0254730:three_prime_UTR |
GATATCTGAATTCAATAAAG+AGG | 0.492464 | 2_2:-48315034 | None:intergenic |
AAATCTGTTCCATTTCATGA+TGG | 0.493216 | 2_2:+48315306 | Msa0254730:CDS |
AAGTCTTGTATGGTGATTTG+AGG | 0.503160 | 2_2:+48315351 | Msa0254730:three_prime_UTR |
TAATTGAAGATGGCTATGAA+TGG | 0.504678 | 2_2:+48314725 | Msa0254730:CDS |
TGATCAATTTGATTATGATA+GGG | 0.507098 | 2_2:-48315192 | None:intergenic |
TAATCAATGCAAAATACCTC+AGG | 0.531627 | 2_2:+48314770 | Msa0254730:CDS |
GGAGGCTGTCATTGAAGCTA+AGG | 0.539380 | 2_2:-48315092 | None:intergenic |
GAAAGTGGTGATGAAAATGC+AGG | 0.541358 | 2_2:-48315132 | None:intergenic |
GTTTATAGTCACATGAGAAA+GGG | 0.556371 | 2_2:-48315239 | None:intergenic |
ATGAAATGGAACAGATTTGG+TGG | 0.571370 | 2_2:-48315301 | None:intergenic |
AAGATCAAAAGCACTTACTT+GGG | 0.571753 | 2_2:+48314684 | Msa0254730:CDS |
AAAAGCACTTACTTGGGAGA+AGG | 0.572656 | 2_2:+48314690 | Msa0254730:CDS |
TATATAGTTCTGTATAATGG+AGG | 0.574674 | 2_2:-48314988 | None:intergenic |
ATATAGTTCTGTATAATGGA+GGG | 0.609422 | 2_2:-48314987 | None:intergenic |
ACATGTGCAGAGAATTCAAG+AGG | 0.632753 | 2_2:+48314963 | Msa0254730:CDS |
AAAGTGGTGATGAAAATGCA+GGG | 0.652523 | 2_2:-48315131 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATATATAGTTCTGTATAA+TGG | - | chr2_2:48314994-48315013 | None:intergenic | 15.0% |
!! | TTATACAGAACTATATATTA+TGG | + | chr2_2:48314994-48315013 | Msa0254730:CDS | 15.0% |
!! | TTATTCATTAAGAATTGACA+GGG | - | chr2_2:48314862-48314881 | None:intergenic | 20.0% |
!! | ATTATTCATTAAGAATTGAC+AGG | - | chr2_2:48314863-48314882 | None:intergenic | 20.0% |
!! | CAATATATGATTCATATCAT+AGG | + | chr2_2:48314890-48314909 | Msa0254730:intron | 20.0% |
!!! | AACATAGAAGAAGTATTATT+AGG | - | chr2_2:48315072-48315091 | None:intergenic | 20.0% |
!! | TGATCAATTTGATTATGATA+GGG | - | chr2_2:48315195-48315214 | None:intergenic | 20.0% |
!! | TTGATCAATTTGATTATGAT+AGG | - | chr2_2:48315196-48315215 | None:intergenic | 20.0% |
!!! | AACTTGAATTTGATAATTTC+AGG | + | chr2_2:48315259-48315278 | Msa0254730:CDS | 20.0% |
!!! | AGCTCAATTTTAATTGAAGA+TGG | + | chr2_2:48314715-48314734 | Msa0254730:CDS | 25.0% |
! | ATTGAAGATATATATACCTG+AGG | - | chr2_2:48314789-48314808 | None:intergenic | 25.0% |
!! | ATATAGTTCTGTATAATGGA+GGG | - | chr2_2:48314990-48315009 | None:intergenic | 25.0% |
!! | TATATAGTTCTGTATAATGG+AGG | - | chr2_2:48314991-48315010 | None:intergenic | 25.0% |
! | GATATCTGAATTCAATAAAG+AGG | - | chr2_2:48315037-48315056 | None:intergenic | 25.0% |
! | GAATTCAGATATCACATTAT+TGG | + | chr2_2:48315044-48315063 | Msa0254730:CDS | 25.0% |
! | TAGGGATTAATAACATCTAT+AGG | - | chr2_2:48315177-48315196 | None:intergenic | 25.0% |
! | ATACAAGACTTACCTAATTT+AGG | - | chr2_2:48315342-48315361 | None:intergenic | 25.0% |
!! | TAAATTAGGTAAGTCTTGTA+TGG | + | chr2_2:48315341-48315360 | Msa0254730:three_prime_UTR | 25.0% |
!! | TAAGATCAAAAGCACTTACT+TGG | + | chr2_2:48314683-48314702 | Msa0254730:CDS | 30.0% |
!! | AAGATCAAAAGCACTTACTT+GGG | + | chr2_2:48314684-48314703 | Msa0254730:CDS | 30.0% |
TAATTGAAGATGGCTATGAA+TGG | + | chr2_2:48314725-48314744 | Msa0254730:CDS | 30.0% | |
TAATCAATGCAAAATACCTC+AGG | + | chr2_2:48314770-48314789 | Msa0254730:CDS | 30.0% | |
! | AAGAGGTTTTGCAATTATGA+TGG | - | chr2_2:48315020-48315039 | None:intergenic | 30.0% |
GTTTATAGTCACATGAGAAA+GGG | - | chr2_2:48315242-48315261 | None:intergenic | 30.0% | |
AGTTTATAGTCACATGAGAA+AGG | - | chr2_2:48315243-48315262 | None:intergenic | 30.0% | |
ATCATGAAATGGAACAGATT+TGG | - | chr2_2:48315307-48315326 | None:intergenic | 30.0% | |
AAATCTGTTCCATTTCATGA+TGG | + | chr2_2:48315306-48315325 | Msa0254730:CDS | 30.0% | |
CACTAAAATCCATCATGAAA+TGG | - | chr2_2:48315318-48315337 | None:intergenic | 30.0% | |
!! | GGATTTTAGTGACCTAAATT+AGG | + | chr2_2:48315327-48315346 | Msa0254730:exon | 30.0% |
! | AAAGTGGTGATGAAAATGCA+GGG | - | chr2_2:48315134-48315153 | None:intergenic | 35.0% |
!! | TGTTTTGTTGGTACAGAAAG+TGG | - | chr2_2:48315150-48315169 | None:intergenic | 35.0% |
!!! | TCTATAGGCTCTTGTTTTGT+TGG | - | chr2_2:48315162-48315181 | None:intergenic | 35.0% |
! | GGTAGTCTGATGATGTTAAT+TGG | - | chr2_2:48315221-48315240 | None:intergenic | 35.0% |
ATGAAATGGAACAGATTTGG+TGG | - | chr2_2:48315304-48315323 | None:intergenic | 35.0% | |
! | AAGTCTTGTATGGTGATTTG+AGG | + | chr2_2:48315351-48315370 | Msa0254730:three_prime_UTR | 35.0% |
!! | AAAAGCACTTACTTGGGAGA+AGG | + | chr2_2:48314690-48314709 | Msa0254730:CDS | 40.0% |
GGCTATGAATGGAGAAAGTA+TGG | + | chr2_2:48314736-48314755 | Msa0254730:CDS | 40.0% | |
ACATGTGCAGAGAATTCAAG+AGG | + | chr2_2:48314963-48314982 | Msa0254730:CDS | 40.0% | |
!! | GGTATTGTTCTTTGACTTGG+AGG | - | chr2_2:48315113-48315132 | None:intergenic | 40.0% |
!! | CAGGGTATTGTTCTTTGACT+TGG | - | chr2_2:48315116-48315135 | None:intergenic | 40.0% |
! | GAAAGTGGTGATGAAAATGC+AGG | - | chr2_2:48315135-48315154 | None:intergenic | 40.0% |
GGAGGCTGTCATTGAAGCTA+AGG | - | chr2_2:48315095-48315114 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 48314661 | 48315385 | 48314661 | ID=Msa0254730;Name=Msa0254730 |
chr2_2 | mRNA | 48314661 | 48315385 | 48314661 | ID=Msa0254730-mRNA-1;Parent=Msa0254730;Name=Msa0254730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|50|184 |
chr2_2 | exon | 48314661 | 48314791 | 48314661 | ID=Msa0254730-mRNA-1:exon:14572;Parent=Msa0254730-mRNA-1 |
chr2_2 | exon | 48314912 | 48315385 | 48314912 | ID=Msa0254730-mRNA-1:exon:14573;Parent=Msa0254730-mRNA-1 |
chr2_2 | CDS | 48314661 | 48314791 | 48314661 | ID=Msa0254730-mRNA-1:cds;Parent=Msa0254730-mRNA-1 |
chr2_2 | CDS | 48314912 | 48315335 | 48314912 | ID=Msa0254730-mRNA-1:cds;Parent=Msa0254730-mRNA-1 |
chr2_2 | three_prime_UTR | 48315336 | 48315385 | 48315336 | ID=Msa0254730-mRNA-1:three_prime_utr;Parent=Msa0254730-mRNA-1 |
Gene Sequence |
Protein sequence |