Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255030 | XP_003596346.1 | 97.849 | 372 | 7 | 1 | 1 | 372 | 1 | 371 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255030 | sp|Q93VI8|TLP7_ARATH | 71.504 | 379 | 101 | 3 | 1 | 372 | 1 | 379 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255030 | Q2HSA0 | 97.849 | 372 | 7 | 1 | 1 | 372 | 1 | 371 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0255030 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255030 | MtrunA17_Chr2g0315641 | 97.849 | 372 | 7 | 1 | 1 | 372 | 1 | 371 | 0.0 | 760 |
| Msa0255030 | MtrunA17_Chr2g0315651 | 75.603 | 373 | 81 | 5 | 4 | 372 | 1 | 367 | 0.0 | 564 |
| Msa0255030 | MtrunA17_Chr2g0286441 | 51.316 | 380 | 156 | 5 | 20 | 372 | 16 | 393 | 1.92e-134 | 389 |
| Msa0255030 | MtrunA17_Chr8g0373001 | 50.954 | 367 | 150 | 3 | 36 | 372 | 46 | 412 | 1.20e-127 | 372 |
| Msa0255030 | MtrunA17_Chr5g0404321 | 50.276 | 362 | 148 | 2 | 43 | 372 | 55 | 416 | 9.07e-127 | 370 |
| Msa0255030 | MtrunA17_Chr1g0201891 | 48.564 | 383 | 146 | 6 | 40 | 372 | 50 | 431 | 2.74e-121 | 357 |
| Msa0255030 | MtrunA17_Chr1g0155301 | 50.992 | 353 | 150 | 7 | 43 | 372 | 70 | 422 | 5.45e-121 | 356 |
| Msa0255030 | MtrunA17_Chr1g0196071 | 50.838 | 358 | 143 | 6 | 43 | 372 | 50 | 402 | 2.57e-120 | 353 |
| Msa0255030 | MtrunA17_Chr2g0278511 | 48.404 | 376 | 146 | 8 | 43 | 372 | 54 | 427 | 1.45e-117 | 347 |
| Msa0255030 | MtrunA17_Chr8g0373361 | 40.659 | 364 | 173 | 8 | 36 | 365 | 51 | 405 | 8.88e-79 | 248 |
| Msa0255030 | MtrunA17_Chr8g0373331 | 40.517 | 348 | 141 | 11 | 36 | 363 | 45 | 346 | 1.89e-67 | 216 |
| Msa0255030 | MtrunA17_Chr8g0373341 | 35.920 | 348 | 120 | 8 | 42 | 362 | 49 | 320 | 7.40e-46 | 159 |
| Msa0255030 | MtrunA17_Chr1g0156151 | 48.077 | 156 | 77 | 1 | 58 | 209 | 66 | 221 | 1.65e-44 | 153 |
| Msa0255030 | MtrunA17_Chr8g0373351 | 33.535 | 331 | 138 | 10 | 50 | 364 | 22 | 286 | 2.28e-39 | 141 |
| Msa0255030 | MtrunA17_Chr3g0091401 | 38.372 | 86 | 47 | 1 | 86 | 171 | 9 | 88 | 1.67e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255030 | AT1G53320.1 | 71.504 | 379 | 101 | 3 | 1 | 372 | 1 | 379 | 0.0 | 543 |
| Msa0255030 | AT2G47900.2 | 49.300 | 357 | 152 | 5 | 43 | 372 | 52 | 406 | 2.63e-123 | 362 |
| Msa0255030 | AT2G47900.1 | 49.300 | 357 | 152 | 5 | 43 | 372 | 52 | 406 | 2.63e-123 | 362 |
| Msa0255030 | AT2G47900.3 | 49.162 | 358 | 152 | 5 | 43 | 372 | 52 | 407 | 3.61e-123 | 361 |
| Msa0255030 | AT2G18280.2 | 51.289 | 349 | 148 | 5 | 43 | 372 | 48 | 393 | 8.36e-120 | 352 |
| Msa0255030 | AT2G18280.1 | 51.289 | 349 | 148 | 5 | 43 | 372 | 48 | 393 | 8.36e-120 | 352 |
| Msa0255030 | AT1G76900.2 | 45.297 | 404 | 146 | 7 | 41 | 372 | 55 | 455 | 4.46e-117 | 347 |
| Msa0255030 | AT1G76900.1 | 45.297 | 404 | 146 | 7 | 41 | 372 | 55 | 455 | 4.46e-117 | 347 |
| Msa0255030 | AT1G76900.3 | 45.297 | 404 | 146 | 7 | 41 | 372 | 55 | 455 | 4.46e-117 | 347 |
| Msa0255030 | AT1G25280.1 | 47.680 | 388 | 144 | 8 | 43 | 372 | 59 | 445 | 2.02e-115 | 343 |
| Msa0255030 | AT1G47270.3 | 47.091 | 361 | 158 | 8 | 36 | 372 | 37 | 388 | 8.88e-111 | 329 |
| Msa0255030 | AT1G47270.2 | 47.091 | 361 | 158 | 8 | 36 | 372 | 61 | 412 | 2.06e-110 | 329 |
| Msa0255030 | AT1G47270.1 | 47.091 | 361 | 158 | 8 | 36 | 372 | 62 | 413 | 2.27e-110 | 329 |
| Msa0255030 | AT3G06380.1 | 46.849 | 365 | 158 | 7 | 35 | 372 | 25 | 380 | 4.91e-109 | 324 |
| Msa0255030 | AT1G43640.1 | 46.194 | 381 | 154 | 7 | 40 | 372 | 52 | 429 | 5.72e-109 | 326 |
| Msa0255030 | AT5G18680.1 | 48.442 | 353 | 157 | 7 | 43 | 372 | 39 | 389 | 3.98e-107 | 320 |
| Msa0255030 | AT1G43640.2 | 46.995 | 366 | 143 | 7 | 55 | 372 | 1 | 363 | 4.65e-106 | 316 |
| Msa0255030 | AT5G18680.2 | 49.141 | 291 | 124 | 6 | 104 | 372 | 9 | 297 | 6.54e-87 | 265 |
| Msa0255030 | AT3G06380.2 | 47.099 | 293 | 120 | 6 | 106 | 372 | 5 | 288 | 1.95e-84 | 258 |
| Msa0255030 | AT1G25280.3 | 46.642 | 268 | 85 | 7 | 162 | 372 | 1 | 267 | 4.55e-72 | 226 |
| Msa0255030 | AT1G25280.2 | 46.642 | 268 | 85 | 7 | 162 | 372 | 1 | 267 | 4.55e-72 | 226 |
| Msa0255030 | AT1G61940.2 | 47.126 | 87 | 46 | 0 | 46 | 132 | 1 | 87 | 1.55e-22 | 96.3 |
| Msa0255030 | AT1G61940.1 | 47.541 | 61 | 32 | 0 | 46 | 106 | 1 | 61 | 1.23e-13 | 70.5 |
Find 123 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACAGCTCGGACTTTCT+TGG | 0.231255 | 2_2:+48651359 | Msa0255030:intron |
| ATGATGGTTTGGCACCATTA+TGG | 0.232651 | 2_2:-48651415 | None:intergenic |
| GCAGCCCTTGTCCGCCTTCC+AGG | 0.253322 | 2_2:+48651877 | Msa0255030:CDS |
| GCGATATAACATACTCAGTA+TGG | 0.267086 | 2_2:-48650463 | None:intergenic |
| CTTTCCCTCCCGGTTGGCTT+TGG | 0.300866 | 2_2:-48651787 | None:intergenic |
| CTTCAAAAGGTTGAACTTGT+AGG | 0.307145 | 2_2:-48651519 | None:intergenic |
| CATTATGCTTATTTATTCCT+TGG | 0.313752 | 2_2:+48651963 | Msa0255030:three_prime_UTR |
| GCCATTTGCCTAACTAGCTT+TGG | 0.331794 | 2_2:+48651905 | Msa0255030:CDS |
| TGGCACCATTATGGGGTGGC+TGG | 0.351579 | 2_2:-48651406 | None:intergenic |
| AACTAGCTTTGGCACTAAAC+TGG | 0.354421 | 2_2:+48651916 | Msa0255030:CDS |
| GTTTAGTGCCAAAGCTAGTT+AGG | 0.355030 | 2_2:-48651913 | None:intergenic |
| GGCAAAACGCCGGCTAGCTC+TGG | 0.355300 | 2_2:-48651441 | None:intergenic |
| TTGAGGGCTTATCTGTTTGC+TGG | 0.356555 | 2_2:-48651462 | None:intergenic |
| TCGCCAGCATTCACAGATAA+AGG | 0.367850 | 2_2:+48650401 | Msa0255030:intron |
| AGGCACCGGTGGCGGCGAAT+CGG | 0.369648 | 2_2:+48647636 | Msa0255030:CDS |
| AGCTCTGGCACATGATGGTT+TGG | 0.380769 | 2_2:-48651426 | None:intergenic |
| CGCCGCCACCGGTGCCTCTC+CGG | 0.382924 | 2_2:-48647630 | None:intergenic |
| CAAATTCTCGAAATCCTTCA+AGG | 0.391328 | 2_2:+48647576 | Msa0255030:CDS |
| TGATGGTTTGGCACCATTAT+GGG | 0.393178 | 2_2:-48651414 | None:intergenic |
| AACAGTACTTACATGATGTA+AGG | 0.402699 | 2_2:-48648883 | None:intergenic |
| TGCTGGTGCTTGAACTTTCA+TGG | 0.404252 | 2_2:+48651713 | Msa0255030:CDS |
| TCTTCATCTCCTTTCCCTCC+CGG | 0.407140 | 2_2:-48651797 | None:intergenic |
| GAGTCTATAAATTTGATTGT+AGG | 0.408086 | 2_2:+48652033 | Msa0255030:three_prime_UTR |
| TATTAGCAGCTAGAAGATAT+AGG | 0.409814 | 2_2:+48650432 | Msa0255030:CDS |
| GAAACGGTTCTCCTCCAGTT+TGG | 0.411512 | 2_2:+48651818 | Msa0255030:CDS |
| CGTCCCCTACTTTACCAAAC+TGG | 0.415882 | 2_2:-48651832 | None:intergenic |
| TACTGTGGACCAAAGCCAAC+CGG | 0.423752 | 2_2:+48651778 | Msa0255030:CDS |
| TTGGCCCTCTCGACTTCAAA+AGG | 0.424052 | 2_2:-48651532 | None:intergenic |
| CTTCCATAGTCATATATTTG+TGG | 0.425403 | 2_2:+48652113 | Msa0255030:three_prime_UTR |
| AAAGTTTCCTGTCTCATCAA+TGG | 0.435431 | 2_2:+48651574 | Msa0255030:CDS |
| AGACCACAAATATATGACTA+TGG | 0.437606 | 2_2:-48652116 | None:intergenic |
| GATAGATTGAACTTCCTTGA+AGG | 0.441232 | 2_2:-48647590 | None:intergenic |
| TCCTCCAGTTTGGTAAAGTA+GGG | 0.446113 | 2_2:+48651828 | Msa0255030:CDS |
| ATACCTTCACTATGGACTAT+AGG | 0.448091 | 2_2:+48651855 | Msa0255030:CDS |
| CAAAGCCAACCGGGAGGGAA+AGG | 0.450993 | 2_2:+48651788 | Msa0255030:CDS |
| CTTGTGCCTGCGTGTGTAAA+CGG | 0.451934 | 2_2:+48647764 | Msa0255030:CDS |
| CTCCTCCAGTTTGGTAAAGT+AGG | 0.453347 | 2_2:+48651827 | Msa0255030:CDS |
| GACAGCCAGCCACCCCATAA+TGG | 0.455889 | 2_2:+48651401 | Msa0255030:CDS |
| GACCGGAGAGGCACCGGTGG+CGG | 0.463232 | 2_2:+48647628 | Msa0255030:CDS |
| ACCGGTGCCTCTCCGGTCAT+CGG | 0.463716 | 2_2:-48647623 | None:intergenic |
| GGCATGAGCATTTGCAATGC+TGG | 0.463812 | 2_2:+48651696 | Msa0255030:CDS |
| AAACGCCTGGAAGGCGGACA+AGG | 0.466204 | 2_2:-48651882 | None:intergenic |
| TCCGCTTTATAAGACAATGA+TGG | 0.469186 | 2_2:-48648826 | None:intergenic |
| ATTATCTCTGCAAGGAGATC+CGG | 0.469997 | 2_2:-48647688 | None:intergenic |
| ATCCGCCGATTCGCCGCCAC+CGG | 0.472733 | 2_2:-48647641 | None:intergenic |
| AAGTTTCCTGTCTCATCAAT+GGG | 0.481200 | 2_2:+48651575 | Msa0255030:CDS |
| CCGCTTTATAAGACAATGAT+GGG | 0.481752 | 2_2:-48648825 | None:intergenic |
| CATCTCCTTTCCCTCCCGGT+TGG | 0.483246 | 2_2:-48651793 | None:intergenic |
| GCCTCTCCGGTCATCGGCGA+CGG | 0.483479 | 2_2:-48647617 | None:intergenic |
| AGTGAGCACATCATCCTCCT+TGG | 0.487846 | 2_2:-48651551 | None:intergenic |
| AGGGGACGATACCTTCACTA+TGG | 0.497644 | 2_2:+48651847 | Msa0255030:CDS |
| CCTGCAGGTAACTTCGAGGC+AGG | 0.502070 | 2_2:+48651488 | Msa0255030:CDS |
| TTAGGCAAATGGCAAACGCC+TGG | 0.502545 | 2_2:-48651895 | None:intergenic |
| CTTTCACCCATTGATGAGAC+AGG | 0.505376 | 2_2:-48651581 | None:intergenic |
| CAAGGAAGTAATGCTTATGT+TGG | 0.506103 | 2_2:+48650506 | Msa0255030:CDS |
| ATGATGTAAGGGCGAGATAG+AGG | 0.507033 | 2_2:-48648871 | None:intergenic |
| GCCAAAGCTAGTTAGGCAAA+TGG | 0.507967 | 2_2:-48651906 | None:intergenic |
| ACGGTGCGGCCACTGTTCCT+CGG | 0.508536 | 2_2:-48647728 | None:intergenic |
| GCCGATGACCGGAGAGGCAC+CGG | 0.510578 | 2_2:+48647622 | Msa0255030:CDS |
| AAGTTACCTGCAGGAACTTG+AGG | 0.512337 | 2_2:-48651479 | None:intergenic |
| CTTTCAGCTGGTTGCTACTG+TGG | 0.512635 | 2_2:+48651763 | Msa0255030:CDS |
| TGCAGGTAACTTCGAGGCAG+GGG | 0.515876 | 2_2:+48651490 | Msa0255030:CDS |
| CACCGGTGGCGGCGAATCGG+CGG | 0.517697 | 2_2:+48647639 | Msa0255030:CDS |
| GCTGTCATAAATTGTGAAGT+TGG | 0.519403 | 2_2:-48651384 | None:intergenic |
| ATCAGTGAAGAACTTTCAGC+TGG | 0.522886 | 2_2:+48651751 | Msa0255030:CDS |
| TGCAAATGCTCATGCCACCT+TGG | 0.523848 | 2_2:-48651689 | None:intergenic |
| CCCATCATTGTCTTATAAAG+CGG | 0.524392 | 2_2:+48648825 | Msa0255030:CDS |
| TGGGGAAGATCACGTGGTCC+TGG | 0.524705 | 2_2:-48648806 | None:intergenic |
| ATGCTTATGTTGGCAAGCTA+AGG | 0.535171 | 2_2:+48650516 | Msa0255030:CDS |
| CATCATGTGCCAGAGCTAGC+CGG | 0.536747 | 2_2:+48651432 | Msa0255030:CDS |
| CTCGTTTAATTATCTCTGCA+AGG | 0.537679 | 2_2:-48647696 | None:intergenic |
| TACAGAGAGAAAGAGAAAGA+AGG | 0.538695 | 2_2:-48647465 | None:intergenic |
| AGTTACCTGCAGGAACTTGA+GGG | 0.549506 | 2_2:-48651478 | None:intergenic |
| TCGACACCGTCGCCGATGAC+CGG | 0.551670 | 2_2:+48647611 | Msa0255030:CDS |
| TTAACGAAAGAGTGTGTGAA+AGG | 0.553515 | 2_2:-48647442 | None:intergenic |
| ACTACACATGTCGTTAATGA+AGG | 0.555255 | 2_2:+48647540 | Msa0255030:exon |
| AATCGGCGGATGGAACTGAT+TGG | 0.557522 | 2_2:+48647653 | Msa0255030:CDS |
| CGGCTAGCTCTGGCACATGA+TGG | 0.568143 | 2_2:-48651431 | None:intergenic |
| GGCGAGATAGAGGTAAAATG+TGG | 0.568448 | 2_2:-48648861 | None:intergenic |
| GATGGTTTGGCACCATTATG+GGG | 0.570572 | 2_2:-48651413 | None:intergenic |
| AGTACCTGTTTAAGACAAGA+AGG | 0.570907 | 2_2:-48647847 | None:intergenic |
| TATTCACTTTATAACATCCA+AGG | 0.572080 | 2_2:-48651980 | None:intergenic |
| AGGGAAAGGAGATGAAGAAA+CGG | 0.585294 | 2_2:+48651802 | Msa0255030:CDS |
| AACGCCTGGAAGGCGGACAA+GGG | 0.585668 | 2_2:-48651881 | None:intergenic |
| CTGCAGGTAACTTCGAGGCA+GGG | 0.587745 | 2_2:+48651489 | Msa0255030:CDS |
| CGAAAGAGTGTGTGAAAGGG+TGG | 0.591334 | 2_2:-48647438 | None:intergenic |
| CCTGCCTCGAAGTTACCTGC+AGG | 0.591340 | 2_2:-48651488 | None:intergenic |
| TCTGTTTGCTGGCAAAACGC+CGG | 0.592503 | 2_2:-48651451 | None:intergenic |
| TCGACGTCGCCGAGGAACAG+TGG | 0.595204 | 2_2:+48647719 | Msa0255030:CDS |
| GCAAATGGCAAACGCCTGGA+AGG | 0.600612 | 2_2:-48651891 | None:intergenic |
| TAACGAAAGAGTGTGTGAAA+GGG | 0.600675 | 2_2:-48647441 | None:intergenic |
| TATAGACTCAGCCAAGTGAA+AGG | 0.600860 | 2_2:-48652019 | None:intergenic |
| AGTTCCTGCAGGTAACTTCG+AGG | 0.601824 | 2_2:+48651484 | Msa0255030:CDS |
| TGATTGGTCTACGATGCTAC+CGG | 0.604252 | 2_2:+48647669 | Msa0255030:CDS |
| ACAGTACTTACATGATGTAA+GGG | 0.604759 | 2_2:-48648882 | None:intergenic |
| ATAAGCCCTCAAGTTCCTGC+AGG | 0.609169 | 2_2:+48651473 | Msa0255030:CDS |
| CGATATAACATACTCAGTAT+GGG | 0.610140 | 2_2:-48650462 | None:intergenic |
| GGTGGCGGCGAATCGGCGGA+TGG | 0.611777 | 2_2:+48647643 | Msa0255030:CDS |
| ACTGTGGACCAAAGCCAACC+GGG | 0.622254 | 2_2:+48651779 | Msa0255030:CDS |
| AATGGCAAACGCCTGGAAGG+CGG | 0.622747 | 2_2:-48651888 | None:intergenic |
| GGTTTGGCACCATTATGGGG+TGG | 0.626155 | 2_2:-48651410 | None:intergenic |
| TAAACGAGTCGACGTCGCCG+AGG | 0.631578 | 2_2:+48647711 | Msa0255030:CDS |
| CCTCCAGTTTGGTAAAGTAG+GGG | 0.636441 | 2_2:+48651829 | Msa0255030:CDS |
| TGGACCAAAGCCAACCGGGA+GGG | 0.641249 | 2_2:+48651783 | Msa0255030:CDS |
| CTGCCTATAGTCCATAGTGA+AGG | 0.646889 | 2_2:-48651858 | None:intergenic |
| CAATGATGGGGAAGATCACG+TGG | 0.646996 | 2_2:-48648812 | None:intergenic |
| AAGAGTGTGTGAAAGGGTGG+TGG | 0.649067 | 2_2:-48647435 | None:intergenic |
| GATGACCGGAGAGGCACCGG+TGG | 0.649330 | 2_2:+48647625 | Msa0255030:CDS |
| CTTTCATGGTCGTGTGACAG+TGG | 0.649357 | 2_2:+48651727 | Msa0255030:CDS |
| TCTTGAAGAACAAAGCTCCA+AGG | 0.652245 | 2_2:+48651672 | Msa0255030:CDS |
| GTTAAGTCACCTCAACGTAA+CGG | 0.655976 | 2_2:+48647811 | Msa0255030:CDS |
| CCCCTACTTTACCAAACTGG+AGG | 0.658277 | 2_2:-48651829 | None:intergenic |
| TGAAGTCGAGAGGGCCAAGG+AGG | 0.682719 | 2_2:+48651537 | Msa0255030:CDS |
| CGCTTTATAAGACAATGATG+GGG | 0.686571 | 2_2:-48648824 | None:intergenic |
| GTGATTGTGCCGTTACGTTG+AGG | 0.690998 | 2_2:-48647820 | None:intergenic |
| GCAGCTAGAAGATATAGGTG+TGG | 0.701333 | 2_2:+48650437 | Msa0255030:CDS |
| TGAAGAACAAAGCTCCAAGG+TGG | 0.704573 | 2_2:+48651675 | Msa0255030:CDS |
| TCTCCACCGTTTACACACGC+AGG | 0.710172 | 2_2:-48647770 | None:intergenic |
| TGTCACGAGCTATACACATG+TGG | 0.710803 | 2_2:-48652143 | None:intergenic |
| GATGCTGACGACTTATCACA+AGG | 0.713430 | 2_2:+48650488 | Msa0255030:CDS |
| GTGCCTGCGTGTGTAAACGG+TGG | 0.728961 | 2_2:+48647767 | Msa0255030:CDS |
| GTGGACCAAAGCCAACCGGG+AGG | 0.734579 | 2_2:+48651782 | Msa0255030:CDS |
| ACCGTCGCCGATGACCGGAG+AGG | 0.745569 | 2_2:+48647616 | Msa0255030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAAAAAAAATTAAAAAAA+TGG | - | chr2_2:48647874-48647893 | None:intergenic | 10.0% |
| !!! | CCATTTTTTTAATTTTTTTT+TGG | + | chr2_2:48647871-48647890 | Msa0255030:intron | 10.0% |
| !!! | TTTTTTTTGGTTTATTTTAT+TGG | + | chr2_2:48647884-48647903 | Msa0255030:intron | 10.0% |
| !! | TAATTAGTTAGAATAATTTA+TGG | + | chr2_2:48647917-48647936 | Msa0255030:intron | 10.0% |
| !!! | GAATACTTTTTTTTTTTTTA+TGG | + | chr2_2:48648628-48648647 | Msa0255030:intron | 10.0% |
| !! | AGAAATTTCATTAATATATA+AGG | + | chr2_2:48649543-48649562 | Msa0255030:intron | 10.0% |
| !! | GAAATTTCATTAATATATAA+GGG | + | chr2_2:48649544-48649563 | Msa0255030:intron | 10.0% |
| !! | AAATTTCATTAATATATAAG+GGG | + | chr2_2:48649545-48649564 | Msa0255030:intron | 10.0% |
| !! | CATTTAAAAAAATAAAAATG+AGG | - | chr2_2:48651268-48651287 | None:intergenic | 10.0% |
| !!! | AGTATTGATTTTATGAATTA+GGG | - | chr2_2:48647520-48647539 | None:intergenic | 15.0% |
| !!! | TAGTATTGATTTTATGAATT+AGG | - | chr2_2:48647521-48647540 | None:intergenic | 15.0% |
| !! | ATTGATTATGAGATTAATTA+TGG | + | chr2_2:48648053-48648072 | Msa0255030:intron | 15.0% |
| !! | AATTTCATTAATATATAAGG+GGG | + | chr2_2:48649546-48649565 | Msa0255030:intron | 15.0% |
| !! | TATACTAATTTAGTAATTGT+AGG | + | chr2_2:48649798-48649817 | Msa0255030:intron | 15.0% |
| !! | TTAACTAATTTAGTAATTGT+AGG | + | chr2_2:48649853-48649872 | Msa0255030:intron | 15.0% |
| !! | ATTCACTATAGTTTAATATA+AGG | - | chr2_2:48651066-48651085 | None:intergenic | 15.0% |
| !! | AAAACCATTAATTGAATTTA+TGG | + | chr2_2:48651289-48651308 | Msa0255030:intron | 15.0% |
| !! | AATTAGTGTTAGTAGTAAAA+GGG | + | chr2_2:48648108-48648127 | Msa0255030:intron | 20.0% |
| !!! | TTAATTATGTTTTTGTTCTG+AGG | + | chr2_2:48648146-48648165 | Msa0255030:intron | 20.0% |
| !! | AGTAGTAGTTTAATAGAATT+TGG | + | chr2_2:48648274-48648293 | Msa0255030:intron | 20.0% |
| !!! | TTTAGTTTAATCCAGTAATA+AGG | + | chr2_2:48648300-48648319 | Msa0255030:intron | 20.0% |
| !!! | TAATAAGGTGTTTGTTAAAT+GGG | + | chr2_2:48648315-48648334 | Msa0255030:intron | 20.0% |
| !! | GAGATAAAATGATTTATGTT+TGG | + | chr2_2:48648446-48648465 | Msa0255030:intron | 20.0% |
| !!! | ATTGATTTTGGTATTATTAG+CGG | - | chr2_2:48648601-48648620 | None:intergenic | 20.0% |
| !! | AATAATACCAAAATCAATTC+TGG | + | chr2_2:48648603-48648622 | Msa0255030:intron | 20.0% |
| !!! | TGATTAACATTTTCTTCAAT+TGG | + | chr2_2:48648689-48648708 | Msa0255030:intron | 20.0% |
| !!! | ATTATTTTTGCATTTAAGCA+TGG | + | chr2_2:48649657-48649676 | Msa0255030:intron | 20.0% |
| !!! | TACTTAATTCTATCATCTTT+TGG | + | chr2_2:48649690-48649709 | Msa0255030:intron | 20.0% |
| !! | ACATTCTTATTATGTAAATC+TGG | + | chr2_2:48649771-48649790 | Msa0255030:intron | 20.0% |
| !! | ATTTACTGTAAACATATGTT+TGG | + | chr2_2:48650120-48650139 | Msa0255030:intron | 20.0% |
| !! | AATCAGCAATTTATAATTGT+CGG | - | chr2_2:48650288-48650307 | None:intergenic | 20.0% |
| !!! | TTACATTTTCTTTGATGTTT+TGG | + | chr2_2:48650330-48650349 | Msa0255030:intron | 20.0% |
| !!! | TACATTTTCTTTGATGTTTT+GGG | + | chr2_2:48650331-48650350 | Msa0255030:intron | 20.0% |
| !!! | TTTTTATCCTTTTTGTTGAA+TGG | + | chr2_2:48650617-48650636 | Msa0255030:intron | 20.0% |
| !!! | CTTTGATCTTAGATATTTTT+AGG | - | chr2_2:48650967-48650986 | None:intergenic | 20.0% |
| !!! | CAAGAGTTTTTGTATAAATA+AGG | - | chr2_2:48651158-48651177 | None:intergenic | 20.0% |
| !! | TTGACCATAAATTCAATTAA+TGG | - | chr2_2:48651296-48651315 | None:intergenic | 20.0% |
| !!! | AATTATGGTTTTACTTGTTG+AGG | + | chr2_2:48648068-48648087 | Msa0255030:intron | 25.0% |
| ! | CAATTAGTGTTAGTAGTAAA+AGG | + | chr2_2:48648107-48648126 | Msa0255030:intron | 25.0% |
| ! | TTAGTAGTAAAAGGGTTTAT+TGG | + | chr2_2:48648116-48648135 | Msa0255030:intron | 25.0% |
| ! | TTGTTAGTTAATGAGTGATT+TGG | + | chr2_2:48648170-48648189 | Msa0255030:intron | 25.0% |
| ! | TTTAACAAACACCTTATTAC+TGG | - | chr2_2:48648314-48648333 | None:intergenic | 25.0% |
| !! | GTAATAAGGTGTTTGTTAAA+TGG | + | chr2_2:48648314-48648333 | Msa0255030:intron | 25.0% |
| ! | TGTTAAATGGGTATTAGTAT+TGG | + | chr2_2:48648327-48648346 | Msa0255030:intron | 25.0% |
| !!! | GTAGTTTTATGTGTTTGAAA+TGG | + | chr2_2:48648356-48648375 | Msa0255030:intron | 25.0% |
| ! | TTGAGTGTAAAAATCACATT+AGG | + | chr2_2:48648503-48648522 | Msa0255030:intron | 25.0% |
| !!! | TTGATTTTGGTATTATTAGC+GGG | - | chr2_2:48648600-48648619 | None:intergenic | 25.0% |
| !! | TTAACATTTTCTTCAATTGG+TGG | + | chr2_2:48648692-48648711 | Msa0255030:intron | 25.0% |
| !!! | AATGAGACATAAGTTGATTT+CGG | + | chr2_2:48648739-48648758 | Msa0255030:intron | 25.0% |
| !!! | TTTTTGCCTGTTTTTATAGA+TGG | + | chr2_2:48648921-48648940 | Msa0255030:intron | 25.0% |
| ! | TTTCAACCATCTATAAAAAC+AGG | - | chr2_2:48648930-48648949 | None:intergenic | 25.0% |
| ! | TAAAAGGATATCATACAACT+CGG | - | chr2_2:48648965-48648984 | None:intergenic | 25.0% |
| !! | ATATCCTTTTATCTTCCTAT+GGG | + | chr2_2:48648974-48648993 | Msa0255030:intron | 25.0% |
| ! | AATATATTTGTCAAACCACA+TGG | + | chr2_2:48649170-48649189 | Msa0255030:intron | 25.0% |
| !! | AGCTTATCTTTTCTTATTGT+GGG | - | chr2_2:48649425-48649444 | None:intergenic | 25.0% |
| !! | AAGCTTATCTTTTCTTATTG+TGG | - | chr2_2:48649426-48649445 | None:intergenic | 25.0% |
| ! | ACAAATCATAGTATGCATTT+AGG | - | chr2_2:48649623-48649642 | None:intergenic | 25.0% |
| !! | AAATGCATACTATGATTTGT+TGG | + | chr2_2:48649623-48649642 | Msa0255030:intron | 25.0% |
| ! | ATGATAGAATTAAGTAACCA+TGG | - | chr2_2:48649686-48649705 | None:intergenic | 25.0% |
| ! | TTCTTATTATGTAAATCTGG+AGG | + | chr2_2:48649774-48649793 | Msa0255030:intron | 25.0% |
| ! | AAATGATGATAGTTAGTACA+AGG | + | chr2_2:48650244-48650263 | Msa0255030:intron | 25.0% |
| !!! | GAAACATTTTATTTCTTTCC+TGG | - | chr2_2:48650575-48650594 | None:intergenic | 25.0% |
| ! | TTAATGTAAGATACTGTCAT+TGG | + | chr2_2:48650647-48650666 | Msa0255030:intron | 25.0% |
| !!! | TTTTAGTTTTCTTATGGTTG+AGG | - | chr2_2:48650840-48650859 | None:intergenic | 25.0% |
| ! | CAACCATAAGAAAACTAAAA+AGG | + | chr2_2:48650840-48650859 | Msa0255030:intron | 25.0% |
| !!! | GTTCCTTTTTAGTTTTCTTA+TGG | - | chr2_2:48650846-48650865 | None:intergenic | 25.0% |
| !! | AAAGGAACTTACTCTTTTAA+AGG | + | chr2_2:48650858-48650877 | Msa0255030:intron | 25.0% |
| !!! | GATTTTAAAAATCCAAAGCA+CGG | + | chr2_2:48650994-48651013 | Msa0255030:intron | 25.0% |
| ! | ATGAATACAGATTTCAGAAT+AGG | - | chr2_2:48651221-48651240 | None:intergenic | 25.0% |
| ! | CATTATGCTTATTTATTCCT+TGG | + | chr2_2:48651963-48651982 | Msa0255030:three_prime_UTR | 25.0% |
| ! | TATTCACTTTATAACATCCA+AGG | - | chr2_2:48651983-48652002 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGTCCTTTCACT+TGG | + | chr2_2:48652008-48652027 | Msa0255030:three_prime_UTR | 25.0% |
| ! | GAGTCTATAAATTTGATTGT+AGG | + | chr2_2:48652033-48652052 | Msa0255030:three_prime_UTR | 25.0% |
| ! | TTTTCCTTCTTGTCTTAAAC+AGG | + | chr2_2:48647843-48647862 | Msa0255030:CDS | 30.0% |
| GTAGTGTCTTAATTTCAGAT+TGG | + | chr2_2:48648222-48648241 | Msa0255030:intron | 30.0% | |
| TGTCTTAATTTCAGATTGGT+GGG | + | chr2_2:48648226-48648245 | Msa0255030:intron | 30.0% | |
| ! | TGTGTTTGAAATGGAAAAGA+TGG | + | chr2_2:48648365-48648384 | Msa0255030:intron | 30.0% |
| AGTGTAAAAATCACATTAGG+AGG | + | chr2_2:48648506-48648525 | Msa0255030:intron | 30.0% | |
| ! | CTTCAAGTTAGAATCAATTC+TGG | + | chr2_2:48648549-48648568 | Msa0255030:intron | 30.0% |
| AATACCAAAATCAATTCTGG+AGG | + | chr2_2:48648606-48648625 | Msa0255030:intron | 30.0% | |
| !! | TATTCCTCCAGAATTGATTT+TGG | - | chr2_2:48648613-48648632 | None:intergenic | 30.0% |
| AATACAAACCAGACATTTAC+AGG | - | chr2_2:48648718-48648737 | None:intergenic | 30.0% | |
| !! | ATGAGACATAAGTTGATTTC+GGG | + | chr2_2:48648740-48648759 | Msa0255030:intron | 30.0% |
| ACAGTACTTACATGATGTAA+GGG | - | chr2_2:48648885-48648904 | None:intergenic | 30.0% | |
| AACAGTACTTACATGATGTA+AGG | - | chr2_2:48648886-48648905 | None:intergenic | 30.0% | |
| !! | ACATCATGTAAGTACTGTTT+TGG | + | chr2_2:48648887-48648906 | Msa0255030:intron | 30.0% |
| ! | GATATCCTTTTATCTTCCTA+TGG | + | chr2_2:48648973-48648992 | Msa0255030:intron | 30.0% |
| ! | TATCCTTTTATCTTCCTATG+GGG | + | chr2_2:48648975-48648994 | Msa0255030:intron | 30.0% |
| GTTGATCGTATAAAGTCTAA+TGG | + | chr2_2:48649004-48649023 | Msa0255030:intron | 30.0% | |
| ATGAGTAAATTGAACAAGGT+AGG | - | chr2_2:48649267-48649286 | None:intergenic | 30.0% | |
| TAGGATGAGTAAATTGAACA+AGG | - | chr2_2:48649271-48649290 | None:intergenic | 30.0% | |
| AAACCAAACTAGTTAGGAAT+AGG | - | chr2_2:48649290-48649309 | None:intergenic | 30.0% | |
| AACACTAAACCAAACTAGTT+AGG | - | chr2_2:48649296-48649315 | None:intergenic | 30.0% | |
| GGTTTAGTGTTGTGAAATAT+CGG | + | chr2_2:48649305-48649324 | Msa0255030:intron | 30.0% | |
| ! | AATGTTTTCAGAGATTGAAG+TGG | + | chr2_2:48649489-48649508 | Msa0255030:intron | 30.0% |
| ACTACTACAGGAAAAGAAAA+AGG | - | chr2_2:48650006-48650025 | None:intergenic | 30.0% | |
| AAAGGAATATTCACTACTAC+AGG | - | chr2_2:48650018-48650037 | None:intergenic | 30.0% | |
| ATTCCTTTGTAGTAGTTATG+TGG | + | chr2_2:48650030-48650049 | Msa0255030:intron | 30.0% | |
| TCCAATTCTTGAGCAATTAA+TGG | + | chr2_2:48650087-48650106 | Msa0255030:intron | 30.0% | |
| TCCATTAATTGCTCAAGAAT+TGG | - | chr2_2:48650091-48650110 | None:intergenic | 30.0% | |
| TACTGTAAACATATGTTTGG+TGG | + | chr2_2:48650123-48650142 | Msa0255030:intron | 30.0% | |
| AAACAACTCTCTTTCAATCA+TGG | - | chr2_2:48650168-48650187 | None:intergenic | 30.0% | |
| TATTAGCAGCTAGAAGATAT+AGG | + | chr2_2:48650432-48650451 | Msa0255030:CDS | 30.0% | |
| CGATATAACATACTCAGTAT+GGG | - | chr2_2:48650465-48650484 | None:intergenic | 30.0% | |
| ACAAAAAGTTATTTGCTTCC+AGG | + | chr2_2:48650554-48650573 | Msa0255030:intron | 30.0% | |
| AGAGAATTAGAACTTTGTGT+TGG | + | chr2_2:48650769-48650788 | Msa0255030:intron | 30.0% | |
| CACCAATATTATGTAGCTTT+GGG | - | chr2_2:48651108-48651127 | None:intergenic | 30.0% | |
| TCACCAATATTATGTAGCTT+TGG | - | chr2_2:48651109-48651128 | None:intergenic | 30.0% | |
| AAAACTCTTGATGTGTATGT+TGG | + | chr2_2:48651168-48651187 | Msa0255030:intron | 30.0% | |
| TGAAATCTGTATTCATAGCT+TGG | + | chr2_2:48651225-48651244 | Msa0255030:intron | 30.0% | |
| CTTCCATAGTCATATATTTG+TGG | + | chr2_2:48652113-48652132 | Msa0255030:three_prime_UTR | 30.0% | |
| AGACCACAAATATATGACTA+TGG | - | chr2_2:48652119-48652138 | None:intergenic | 30.0% | |
| ! | TAACGAAAGAGTGTGTGAAA+GGG | - | chr2_2:48647444-48647463 | None:intergenic | 35.0% |
| ! | TTAACGAAAGAGTGTGTGAA+AGG | - | chr2_2:48647445-48647464 | None:intergenic | 35.0% |
| TACAGAGAGAAAGAGAAAGA+AGG | - | chr2_2:48647468-48647487 | None:intergenic | 35.0% | |
| ACTACACATGTCGTTAATGA+AGG | + | chr2_2:48647540-48647559 | Msa0255030:exon | 35.0% | |
| CAAATTCTCGAAATCCTTCA+AGG | + | chr2_2:48647576-48647595 | Msa0255030:CDS | 35.0% | |
| GATAGATTGAACTTCCTTGA+AGG | - | chr2_2:48647593-48647612 | None:intergenic | 35.0% | |
| CTCGTTTAATTATCTCTGCA+AGG | - | chr2_2:48647699-48647718 | None:intergenic | 35.0% | |
| ! | AGTACCTGTTTAAGACAAGA+AGG | - | chr2_2:48647850-48647869 | None:intergenic | 35.0% |
| !! | GATTTAGCCCTTTTGAAAGT+AGG | + | chr2_2:48647979-48647998 | Msa0255030:intron | 35.0% |
| GTGCAAACCTACTTTCAAAA+GGG | - | chr2_2:48647989-48648008 | None:intergenic | 35.0% | |
| AGTGCAAACCTACTTTCAAA+AGG | - | chr2_2:48647990-48648009 | None:intergenic | 35.0% | |
| TTTGAAAGTAGGTTTGCACT+TGG | + | chr2_2:48647990-48648009 | Msa0255030:intron | 35.0% | |
| ! | TTTACTTGTTGAGGATGCAA+TGG | + | chr2_2:48648077-48648096 | Msa0255030:intron | 35.0% |
| TAAAAGGGTTTATTGGTGAG+TGG | + | chr2_2:48648123-48648142 | Msa0255030:intron | 35.0% | |
| TTGGATATTTGCATGAGCAA+TGG | + | chr2_2:48648189-48648208 | Msa0255030:intron | 35.0% | |
| GTGTCTTAATTTCAGATTGG+TGG | + | chr2_2:48648225-48648244 | Msa0255030:intron | 35.0% | |
| AAGATGGAAGAATAGTGTTC+AGG | + | chr2_2:48648381-48648400 | Msa0255030:intron | 35.0% | |
| AGAATAGTGTTCAGGAATCA+AGG | + | chr2_2:48648389-48648408 | Msa0255030:intron | 35.0% | |
| CAAGTTAGAATCAATTCTGG+AGG | + | chr2_2:48648552-48648571 | Msa0255030:intron | 35.0% | |
| !! | TGAGACATAAGTTGATTTCG+GGG | + | chr2_2:48648741-48648760 | Msa0255030:intron | 35.0% |
| CGCTTTATAAGACAATGATG+GGG | - | chr2_2:48648827-48648846 | None:intergenic | 35.0% | |
| CCGCTTTATAAGACAATGAT+GGG | - | chr2_2:48648828-48648847 | None:intergenic | 35.0% | |
| CCCATCATTGTCTTATAAAG+CGG | + | chr2_2:48648825-48648844 | Msa0255030:CDS | 35.0% | |
| TCCGCTTTATAAGACAATGA+TGG | - | chr2_2:48648829-48648848 | None:intergenic | 35.0% | |
| AGATCTGCAAAACATCTCAT+TGG | + | chr2_2:48649043-48649062 | Msa0255030:intron | 35.0% | |
| CATCTCATTGGTCAAATGTA+TGG | + | chr2_2:48649055-48649074 | Msa0255030:intron | 35.0% | |
| TGTATGGCAAACATTACTTG+TGG | + | chr2_2:48649071-48649090 | Msa0255030:intron | 35.0% | |
| GTATGGCAAACATTACTTGT+GGG | + | chr2_2:48649072-48649091 | Msa0255030:intron | 35.0% | |
| TATGGCAAACATTACTTGTG+GGG | + | chr2_2:48649073-48649092 | Msa0255030:intron | 35.0% | |
| !! | ACAAAGAAGAGCTTTGTTGT+TGG | + | chr2_2:48649103-48649122 | Msa0255030:intron | 35.0% |
| CATCCTATTCCTAACTAGTT+TGG | + | chr2_2:48649284-48649303 | Msa0255030:intron | 35.0% | |
| ! | CATTTTGAGCCACCATAAAA+CGG | - | chr2_2:48649347-48649366 | None:intergenic | 35.0% |
| TTTATGGTGGCTCAAAATGA+TGG | + | chr2_2:48649348-48649367 | Msa0255030:intron | 35.0% | |
| TATCAATCGACGAACAGTAA+CGG | - | chr2_2:48649387-48649406 | None:intergenic | 35.0% | |
| ! | GTCGATTGATAACACTAGTT+TGG | + | chr2_2:48649396-48649415 | Msa0255030:intron | 35.0% |
| ! | TTTTCAGAGATTGAAGTGGA+AGG | + | chr2_2:48649493-48649512 | Msa0255030:intron | 35.0% |
| ! | TCAGCAATTTTTCTAGACCT+AGG | - | chr2_2:48649937-48649956 | None:intergenic | 35.0% |
| AAAATTGCTGATCCTGATAC+AGG | + | chr2_2:48649946-48649965 | Msa0255030:intron | 35.0% | |
| CAACCACATAACTACTACAA+AGG | - | chr2_2:48650036-48650055 | None:intergenic | 35.0% | |
| GTTTGTAACTGTGTGATTTG+TGG | + | chr2_2:48650184-48650203 | Msa0255030:intron | 35.0% | |
| TTTCCTTTATCTGTGAATGC+TGG | - | chr2_2:48650407-48650426 | None:intergenic | 35.0% | |
| GCGATATAACATACTCAGTA+TGG | - | chr2_2:48650466-48650485 | None:intergenic | 35.0% | |
| CAAGGAAGTAATGCTTATGT+TGG | + | chr2_2:48650506-48650525 | Msa0255030:CDS | 35.0% | |
| TAATTCTCTGTTTCCTACCA+AGG | - | chr2_2:48650758-48650777 | None:intergenic | 35.0% | |
| !! | TATGTAGCTTTGGGTGTAAA+TGG | - | chr2_2:48651099-48651118 | None:intergenic | 35.0% |
| CACCCAAAGCTACATAATAT+TGG | + | chr2_2:48651103-48651122 | Msa0255030:intron | 35.0% | |
| TGAAGACAATTCAGCAACTA+TGG | - | chr2_2:48651344-48651363 | None:intergenic | 35.0% | |
| GCTGTCATAAATTGTGAAGT+TGG | - | chr2_2:48651387-48651406 | None:intergenic | 35.0% | |
| CTTCAAAAGGTTGAACTTGT+AGG | - | chr2_2:48651522-48651541 | None:intergenic | 35.0% | |
| AAAGTTTCCTGTCTCATCAA+TGG | + | chr2_2:48651574-48651593 | Msa0255030:CDS | 35.0% | |
| AAGTTTCCTGTCTCATCAAT+GGG | + | chr2_2:48651575-48651594 | Msa0255030:CDS | 35.0% | |
| ! | TCAGATAGCAAGTCTTTTGA+TGG | + | chr2_2:48651605-48651624 | Msa0255030:CDS | 35.0% |
| ! | ATACCTTCACTATGGACTAT+AGG | + | chr2_2:48651855-48651874 | Msa0255030:CDS | 35.0% |
| ATTATCTCTGCAAGGAGATC+CGG | - | chr2_2:48647691-48647710 | None:intergenic | 40.0% | |
| GTTAAGTCACCTCAACGTAA+CGG | + | chr2_2:48647811-48647830 | Msa0255030:CDS | 40.0% | |
| TTGTTGAGGATGCAATGGAA+TGG | + | chr2_2:48648082-48648101 | Msa0255030:intron | 40.0% | |
| CATGAGCAATGGAAGCTATT+TGG | + | chr2_2:48648200-48648219 | Msa0255030:intron | 40.0% | |
| !! | TTGGTGGGTTAATACTGCTT+TGG | + | chr2_2:48648241-48648260 | Msa0255030:intron | 40.0% |
| !! | GAGACATAAGTTGATTTCGG+GGG | + | chr2_2:48648742-48648761 | Msa0255030:intron | 40.0% |
| !! | ATAAGTTGATTTCGGGGGTT+TGG | + | chr2_2:48648747-48648766 | Msa0255030:intron | 40.0% |
| !!! | TGTTTTGATGACTTACAGCC+AGG | + | chr2_2:48648788-48648807 | Msa0255030:intron | 40.0% |
| GTACCCCATAGGAAGATAAA+AGG | - | chr2_2:48648981-48649000 | None:intergenic | 40.0% | |
| !! | TTGGAGTATTGGACTAAGTC+TGG | - | chr2_2:48649214-48649233 | None:intergenic | 40.0% |
| AGCAAGTCATCTTGGAGTAT+TGG | - | chr2_2:48649225-48649244 | None:intergenic | 40.0% | |
| TTGACTGAAGCAAGTCATCT+TGG | - | chr2_2:48649233-48649252 | None:intergenic | 40.0% | |
| ! | GACTTGCTTCAGTCAATGTA+TGG | + | chr2_2:48649237-48649256 | Msa0255030:intron | 40.0% |
| GACATAGCTTATGTAGACCT+AGG | + | chr2_2:48649917-48649936 | Msa0255030:intron | 40.0% | |
| GTAGTTATGTGGTTGTCACA+TGG | + | chr2_2:48650041-48650060 | Msa0255030:intron | 40.0% | |
| ATGCTTATGTTGGCAAGCTA+AGG | + | chr2_2:48650516-48650535 | Msa0255030:CDS | 40.0% | |
| TCTTACGTGTTTCTTCTGCT+TGG | + | chr2_2:48650593-48650612 | Msa0255030:intron | 40.0% | |
| ! | ATCCTTTTTGTTGAATGGCG+TGG | + | chr2_2:48650622-48650641 | Msa0255030:intron | 40.0% |
| ! | AACTTTGTGTTGGCACAATC+AGG | + | chr2_2:48650779-48650798 | Msa0255030:intron | 40.0% |
| ! | ACTTTGTGTTGGCACAATCA+GGG | + | chr2_2:48650780-48650799 | Msa0255030:intron | 40.0% |
| ATGTTGGTCAACAAAGTTGC+TGG | + | chr2_2:48651184-48651203 | Msa0255030:intron | 40.0% | |
| ! | TGATGGTTTGGCACCATTAT+GGG | - | chr2_2:48651417-48651436 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGGCACCATTA+TGG | - | chr2_2:48651418-48651437 | None:intergenic | 40.0% |
| !!! | TTCAACCTTTTGAAGTCGAG+AGG | + | chr2_2:48651527-48651546 | Msa0255030:CDS | 40.0% |
| !!! | TCAACCTTTTGAAGTCGAGA+GGG | + | chr2_2:48651528-48651547 | Msa0255030:CDS | 40.0% |
| TCTTGAAGAACAAAGCTCCA+AGG | + | chr2_2:48651672-48651691 | Msa0255030:CDS | 40.0% | |
| ATCAGTGAAGAACTTTCAGC+TGG | + | chr2_2:48651751-48651770 | Msa0255030:CDS | 40.0% | |
| AGGGAAAGGAGATGAAGAAA+CGG | + | chr2_2:48651802-48651821 | Msa0255030:CDS | 40.0% | |
| TCCTCCAGTTTGGTAAAGTA+GGG | + | chr2_2:48651828-48651847 | Msa0255030:CDS | 40.0% | |
| GTTTAGTGCCAAAGCTAGTT+AGG | - | chr2_2:48651916-48651935 | None:intergenic | 40.0% | |
| !! | AACTAGCTTTGGCACTAAAC+TGG | + | chr2_2:48651916-48651935 | Msa0255030:CDS | 40.0% |
| TATAGACTCAGCCAAGTGAA+AGG | - | chr2_2:48652022-48652041 | None:intergenic | 40.0% | |
| !! | TGATTGGTCTACGATGCTAC+CGG | + | chr2_2:48647669-48647688 | Msa0255030:CDS | 45.0% |
| TTGGTTACATTCACGATCGC+AGG | + | chr2_2:48648465-48648484 | Msa0255030:intron | 45.0% | |
| ! | ATTGGTGGCCTGTAAATGTC+TGG | + | chr2_2:48648707-48648726 | Msa0255030:intron | 45.0% |
| GGCGAGATAGAGGTAAAATG+TGG | - | chr2_2:48648864-48648883 | None:intergenic | 45.0% | |
| ATGATGTAAGGGCGAGATAG+AGG | - | chr2_2:48648874-48648893 | None:intergenic | 45.0% | |
| CGATCAACAATGTACCCCAT+AGG | - | chr2_2:48648992-48649011 | None:intergenic | 45.0% | |
| ! | ACTGACTGGTTAGAACCATG+TGG | - | chr2_2:48649188-48649207 | None:intergenic | 45.0% |
| ACTAAGTCTGGTCAACTGAC+TGG | - | chr2_2:48649202-48649221 | None:intergenic | 45.0% | |
| GTGTTGTGAAATATCGGCCA+TGG | + | chr2_2:48649311-48649330 | Msa0255030:intron | 45.0% | |
| TTGTGAAATATCGGCCATGG+TGG | + | chr2_2:48649314-48649333 | Msa0255030:intron | 45.0% | |
| TAAGGGGGAGATTTCATGAG+TGG | + | chr2_2:48649561-48649580 | Msa0255030:intron | 45.0% | |
| GGAGATTTCATGAGTGGCTA+AGG | + | chr2_2:48649567-48649586 | Msa0255030:intron | 45.0% | |
| GCATTTAAGCATGGTGTCCA+TGG | + | chr2_2:48649666-48649685 | Msa0255030:intron | 45.0% | |
| ATGAGCAGAACAGGAAAGAG+GGG | - | chr2_2:48650382-48650401 | None:intergenic | 45.0% | |
| GATGAGCAGAACAGGAAAGA+GGG | - | chr2_2:48650383-48650402 | None:intergenic | 45.0% | |
| TCGCCAGCATTCACAGATAA+AGG | + | chr2_2:48650401-48650420 | Msa0255030:intron | 45.0% | |
| GCAGCTAGAAGATATAGGTG+TGG | + | chr2_2:48650437-48650456 | Msa0255030:CDS | 45.0% | |
| GATGCTGACGACTTATCACA+AGG | + | chr2_2:48650488-48650507 | Msa0255030:CDS | 45.0% | |
| CACCACGCCATTCAACAAAA+AGG | - | chr2_2:48650627-48650646 | None:intergenic | 45.0% | |
| TTTCTCTGTTGTGATCGCCT+TGG | + | chr2_2:48650738-48650757 | Msa0255030:intron | 45.0% | |
| ! | TGAAAACCTTCGCTTGTTGC+AGG | + | chr2_2:48650893-48650912 | Msa0255030:intron | 45.0% |
| ! | GAAAACCTTCGCTTGTTGCA+GGG | + | chr2_2:48650894-48650913 | Msa0255030:intron | 45.0% |
| ! | AAAACCTTCGCTTGTTGCAG+GGG | + | chr2_2:48650895-48650914 | Msa0255030:intron | 45.0% |
| ! | GGTGCAAACAGGATGGATTT+CGG | + | chr2_2:48650916-48650935 | Msa0255030:intron | 45.0% |
| !! | GTAGCTTTGGGTGTAAATGG+AGG | - | chr2_2:48651096-48651115 | None:intergenic | 45.0% |
| AGCAACTATGGTCAGTACTC+AGG | - | chr2_2:48651332-48651351 | None:intergenic | 45.0% | |
| GCTGAATTGTCTTCACAGCT+CGG | + | chr2_2:48651349-48651368 | Msa0255030:intron | 45.0% | |
| ! | GATGGTTTGGCACCATTATG+GGG | - | chr2_2:48651416-48651435 | None:intergenic | 45.0% |
| TTGAGGGCTTATCTGTTTGC+TGG | - | chr2_2:48651465-48651484 | None:intergenic | 45.0% | |
| AGTTACCTGCAGGAACTTGA+GGG | - | chr2_2:48651481-48651500 | None:intergenic | 45.0% | |
| AAGTTACCTGCAGGAACTTG+AGG | - | chr2_2:48651482-48651501 | None:intergenic | 45.0% | |
| CTTTCACCCATTGATGAGAC+AGG | - | chr2_2:48651584-48651603 | None:intergenic | 45.0% | |
| TGAAGAACAAAGCTCCAAGG+TGG | + | chr2_2:48651675-48651694 | Msa0255030:CDS | 45.0% | |
| TGCTGGTGCTTGAACTTTCA+TGG | + | chr2_2:48651713-48651732 | Msa0255030:CDS | 45.0% | |
| CTCCTCCAGTTTGGTAAAGT+AGG | + | chr2_2:48651827-48651846 | Msa0255030:CDS | 45.0% | |
| CCTCCAGTTTGGTAAAGTAG+GGG | + | chr2_2:48651829-48651848 | Msa0255030:CDS | 45.0% | |
| CTGCCTATAGTCCATAGTGA+AGG | - | chr2_2:48651861-48651880 | None:intergenic | 45.0% | |
| ! | GCCATTTGCCTAACTAGCTT+TGG | + | chr2_2:48651905-48651924 | Msa0255030:CDS | 45.0% |
| GCCAAAGCTAGTTAGGCAAA+TGG | - | chr2_2:48651909-48651928 | None:intergenic | 45.0% | |
| ! | AAGAGTGTGTGAAAGGGTGG+TGG | - | chr2_2:48647438-48647457 | None:intergenic | 50.0% |
| ! | CGAAAGAGTGTGTGAAAGGG+TGG | - | chr2_2:48647441-48647460 | None:intergenic | 50.0% |
| AATCGGCGGATGGAACTGAT+TGG | + | chr2_2:48647653-48647672 | Msa0255030:CDS | 50.0% | |
| ! | CACAAGCGACGACGTTTTGA+CGG | - | chr2_2:48647750-48647769 | None:intergenic | 50.0% |
| CTTGTGCCTGCGTGTGTAAA+CGG | + | chr2_2:48647764-48647783 | Msa0255030:CDS | 50.0% | |
| ! | GTGATTGTGCCGTTACGTTG+AGG | - | chr2_2:48647823-48647842 | None:intergenic | 50.0% |
| ! | CAATGATGGGGAAGATCACG+TGG | - | chr2_2:48648815-48648834 | None:intergenic | 50.0% |
| TGAGCCACCATAAAACGGCA+TGG | - | chr2_2:48649342-48649361 | None:intergenic | 50.0% | |
| ACTGACTGCAAGCCTGTATC+AGG | - | chr2_2:48649961-48649980 | None:intergenic | 50.0% | |
| CGATGAGCAGAACAGGAAAG+AGG | - | chr2_2:48650384-48650403 | None:intergenic | 50.0% | |
| TCTGTTGTGATCGCCTTGGT+AGG | + | chr2_2:48650742-48650761 | Msa0255030:intron | 50.0% | |
| CTTCACAGCTCGGACTTTCT+TGG | + | chr2_2:48651359-48651378 | Msa0255030:intron | 50.0% | |
| ! | AGCTCTGGCACATGATGGTT+TGG | - | chr2_2:48651429-48651448 | None:intergenic | 50.0% |
| ! | TCTGTTTGCTGGCAAAACGC+CGG | - | chr2_2:48651454-48651473 | None:intergenic | 50.0% |
| ATAAGCCCTCAAGTTCCTGC+AGG | + | chr2_2:48651473-48651492 | Msa0255030:CDS | 50.0% | |
| AGTTCCTGCAGGTAACTTCG+AGG | + | chr2_2:48651484-48651503 | Msa0255030:CDS | 50.0% | |
| TTGGCCCTCTCGACTTCAAA+AGG | - | chr2_2:48651535-48651554 | None:intergenic | 50.0% | |
| !!! | TTTTGAAGTCGAGAGGGCCA+AGG | + | chr2_2:48651534-48651553 | Msa0255030:CDS | 50.0% |
| AGTGAGCACATCATCCTCCT+TGG | - | chr2_2:48651554-48651573 | None:intergenic | 50.0% | |
| TGCAAATGCTCATGCCACCT+TGG | - | chr2_2:48651692-48651711 | None:intergenic | 50.0% | |
| GGCATGAGCATTTGCAATGC+TGG | + | chr2_2:48651696-48651715 | Msa0255030:CDS | 50.0% | |
| CTTTCATGGTCGTGTGACAG+TGG | + | chr2_2:48651727-48651746 | Msa0255030:CDS | 50.0% | |
| CTTTCAGCTGGTTGCTACTG+TGG | + | chr2_2:48651763-48651782 | Msa0255030:CDS | 50.0% | |
| TACTGTGGACCAAAGCCAAC+CGG | + | chr2_2:48651778-48651797 | Msa0255030:CDS | 50.0% | |
| TCTTCATCTCCTTTCCCTCC+CGG | - | chr2_2:48651800-48651819 | None:intergenic | 50.0% | |
| GAAACGGTTCTCCTCCAGTT+TGG | + | chr2_2:48651818-48651837 | Msa0255030:CDS | 50.0% | |
| CCCCTACTTTACCAAACTGG+AGG | - | chr2_2:48651832-48651851 | None:intergenic | 50.0% | |
| CGTCCCCTACTTTACCAAAC+TGG | - | chr2_2:48651835-48651854 | None:intergenic | 50.0% | |
| AGGGGACGATACCTTCACTA+TGG | + | chr2_2:48651847-48651866 | Msa0255030:CDS | 50.0% | |
| TTAGGCAAATGGCAAACGCC+TGG | - | chr2_2:48651898-48651917 | None:intergenic | 50.0% | |
| GGTTCGAGAGAGAGAGAGAG+AGG | - | chr2_2:48647499-48647518 | None:intergenic | 55.0% | |
| TCTCCACCGTTTACACACGC+AGG | - | chr2_2:48647773-48647792 | None:intergenic | 55.0% | |
| !! | AAAACGGCATGGTGCCACCA+TGG | - | chr2_2:48649331-48649350 | None:intergenic | 55.0% |
| !!! | GGTGGCACCATGCCGTTTTA+TGG | + | chr2_2:48649332-48649351 | Msa0255030:intron | 55.0% |
| !!! | GGCACCATGCCGTTTTATGG+TGG | + | chr2_2:48649335-48649354 | Msa0255030:intron | 55.0% |
| AGAACAGGAAAGAGGGGCAG+GGG | - | chr2_2:48650376-48650395 | None:intergenic | 55.0% | |
| CAGAACAGGAAAGAGGGGCA+GGG | - | chr2_2:48650377-48650396 | None:intergenic | 55.0% | |
| ATGCTGGCGATGAGCAGAAC+AGG | - | chr2_2:48650391-48650410 | None:intergenic | 55.0% | |
| ! | CTTGTTGCAGGGGTGCAAAC+AGG | + | chr2_2:48650905-48650924 | Msa0255030:intron | 55.0% |
| ! | TTGCAGGGGTGCAAACAGGA+TGG | + | chr2_2:48650909-48650928 | Msa0255030:intron | 55.0% |
| GGTTTGGCACCATTATGGGG+TGG | - | chr2_2:48651413-48651432 | None:intergenic | 55.0% | |
| CATCATGTGCCAGAGCTAGC+CGG | + | chr2_2:48651432-48651451 | Msa0255030:CDS | 55.0% | |
| CTGCAGGTAACTTCGAGGCA+GGG | + | chr2_2:48651489-48651508 | Msa0255030:CDS | 55.0% | |
| TGCAGGTAACTTCGAGGCAG+GGG | + | chr2_2:48651490-48651509 | Msa0255030:CDS | 55.0% | |
| ACTGTGGACCAAAGCCAACC+GGG | + | chr2_2:48651779-48651798 | Msa0255030:CDS | 55.0% | |
| AATGGCAAACGCCTGGAAGG+CGG | - | chr2_2:48651891-48651910 | None:intergenic | 55.0% | |
| GCAAATGGCAAACGCCTGGA+AGG | - | chr2_2:48651894-48651913 | None:intergenic | 55.0% | |
| TAAACGAGTCGACGTCGCCG+AGG | + | chr2_2:48647711-48647730 | Msa0255030:CDS | 60.0% | |
| !! | GCGACGACGTTTTGACGGTG+CGG | - | chr2_2:48647745-48647764 | None:intergenic | 60.0% |
| GTGCCTGCGTGTGTAAACGG+TGG | + | chr2_2:48647767-48647786 | Msa0255030:CDS | 60.0% | |
| TGGGGAAGATCACGTGGTCC+TGG | - | chr2_2:48648809-48648828 | None:intergenic | 60.0% | |
| GCAGAACAGGAAAGAGGGGC+AGG | - | chr2_2:48650378-48650397 | None:intergenic | 60.0% | |
| TGCACCCCTGCAACAAGCGA+AGG | - | chr2_2:48650902-48650921 | None:intergenic | 60.0% | |
| TGCAGTGCAGTGCCGTGCTT+TGG | - | chr2_2:48651009-48651028 | None:intergenic | 60.0% | |
| GACAGCCAGCCACCCCATAA+TGG | + | chr2_2:48651401-48651420 | Msa0255030:CDS | 60.0% | |
| TGGCACCATTATGGGGTGGC+TGG | - | chr2_2:48651409-48651428 | None:intergenic | 60.0% | |
| !! | CGGCTAGCTCTGGCACATGA+TGG | - | chr2_2:48651434-48651453 | None:intergenic | 60.0% |
| CCTGCCTCGAAGTTACCTGC+AGG | - | chr2_2:48651491-48651510 | None:intergenic | 60.0% | |
| CCTGCAGGTAACTTCGAGGC+AGG | + | chr2_2:48651488-48651507 | Msa0255030:CDS | 60.0% | |
| TGAAGTCGAGAGGGCCAAGG+AGG | + | chr2_2:48651537-48651556 | Msa0255030:CDS | 60.0% | |
| TGGACCAAAGCCAACCGGGA+GGG | + | chr2_2:48651783-48651802 | Msa0255030:CDS | 60.0% | |
| !! | CTTTCCCTCCCGGTTGGCTT+TGG | - | chr2_2:48651790-48651809 | None:intergenic | 60.0% |
| CAAAGCCAACCGGGAGGGAA+AGG | + | chr2_2:48651788-48651807 | Msa0255030:CDS | 60.0% | |
| CATCTCCTTTCCCTCCCGGT+TGG | - | chr2_2:48651796-48651815 | None:intergenic | 60.0% | |
| AACGCCTGGAAGGCGGACAA+GGG | - | chr2_2:48651884-48651903 | None:intergenic | 60.0% | |
| AAACGCCTGGAAGGCGGACA+AGG | - | chr2_2:48651885-48651904 | None:intergenic | 60.0% | |
| TCGACACCGTCGCCGATGAC+CGG | + | chr2_2:48647611-48647630 | Msa0255030:CDS | 65.0% | |
| ACCGGTGCCTCTCCGGTCAT+CGG | - | chr2_2:48647626-48647645 | None:intergenic | 65.0% | |
| TCGACGTCGCCGAGGAACAG+TGG | + | chr2_2:48647719-48647738 | Msa0255030:CDS | 65.0% | |
| ACGGTGCGGCCACTGTTCCT+CGG | - | chr2_2:48647731-48647750 | None:intergenic | 65.0% | |
| ! | GGCAAAACGCCGGCTAGCTC+TGG | - | chr2_2:48651444-48651463 | None:intergenic | 65.0% |
| GTGGACCAAAGCCAACCGGG+AGG | + | chr2_2:48651782-48651801 | Msa0255030:CDS | 65.0% | |
| ACCGTCGCCGATGACCGGAG+AGG | + | chr2_2:48647616-48647635 | Msa0255030:CDS | 70.0% | |
| GCCTCTCCGGTCATCGGCGA+CGG | - | chr2_2:48647620-48647639 | None:intergenic | 70.0% | |
| ! | GCCGATGACCGGAGAGGCAC+CGG | + | chr2_2:48647622-48647641 | Msa0255030:CDS | 70.0% |
| !! | GATGACCGGAGAGGCACCGG+TGG | + | chr2_2:48647625-48647644 | Msa0255030:CDS | 70.0% |
| !! | AGGCACCGGTGGCGGCGAAT+CGG | + | chr2_2:48647636-48647655 | Msa0255030:CDS | 70.0% |
| !! | ATCCGCCGATTCGCCGCCAC+CGG | - | chr2_2:48647644-48647663 | None:intergenic | 70.0% |
| GCAGCCCTTGTCCGCCTTCC+AGG | + | chr2_2:48651877-48651896 | Msa0255030:CDS | 70.0% | |
| !! | GACCGGAGAGGCACCGGTGG+CGG | + | chr2_2:48647628-48647647 | Msa0255030:CDS | 75.0% |
| ! | CACCGGTGGCGGCGAATCGG+CGG | + | chr2_2:48647639-48647658 | Msa0255030:CDS | 75.0% |
| ! | GGTGGCGGCGAATCGGCGGA+TGG | + | chr2_2:48647643-48647662 | Msa0255030:CDS | 75.0% |
| ! | CGCCGCCACCGGTGCCTCTC+CGG | - | chr2_2:48647633-48647652 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 48647401 | 48652164 | 48647401 | ID=Msa0255030;Name=Msa0255030 |
| chr2_2 | mRNA | 48647401 | 48652164 | 48647401 | ID=Msa0255030-mRNA-1;Parent=Msa0255030;Name=Msa0255030-mRNA-1;_AED=0.35;_eAED=0.35;_QI=146|1|1|1|1|1|4|215|372 |
| chr2_2 | exon | 48647401 | 48647864 | 48647401 | ID=Msa0255030-mRNA-1:exon:14735;Parent=Msa0255030-mRNA-1 |
| chr2_2 | exon | 48648806 | 48648893 | 48648806 | ID=Msa0255030-mRNA-1:exon:14736;Parent=Msa0255030-mRNA-1 |
| chr2_2 | exon | 48650408 | 48650537 | 48650408 | ID=Msa0255030-mRNA-1:exon:14737;Parent=Msa0255030-mRNA-1 |
| chr2_2 | exon | 48651367 | 48652164 | 48651367 | ID=Msa0255030-mRNA-1:exon:14738;Parent=Msa0255030-mRNA-1 |
| chr2_2 | five_prime_UTR | 48647401 | 48647546 | 48647401 | ID=Msa0255030-mRNA-1:five_prime_utr;Parent=Msa0255030-mRNA-1 |
| chr2_2 | CDS | 48647547 | 48647864 | 48647547 | ID=Msa0255030-mRNA-1:cds;Parent=Msa0255030-mRNA-1 |
| chr2_2 | CDS | 48648806 | 48648893 | 48648806 | ID=Msa0255030-mRNA-1:cds;Parent=Msa0255030-mRNA-1 |
| chr2_2 | CDS | 48650408 | 48650537 | 48650408 | ID=Msa0255030-mRNA-1:cds;Parent=Msa0255030-mRNA-1 |
| chr2_2 | CDS | 48651367 | 48651949 | 48651367 | ID=Msa0255030-mRNA-1:cds;Parent=Msa0255030-mRNA-1 |
| chr2_2 | three_prime_UTR | 48651950 | 48652164 | 48651950 | ID=Msa0255030-mRNA-1:three_prime_utr;Parent=Msa0255030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
