Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256890 | XP_039686096.1 | 84.277 | 318 | 20 | 11 | 1 | 307 | 1 | 299 | 6.09e-154 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256890 | Q2HVP9 | 84.277 | 318 | 20 | 11 | 1 | 307 | 1 | 299 | 2.91e-154 | 442 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0256890 | TF | NOZZLE |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256890 | MtrunA17_Chr2g0318721 | 84.277 | 318 | 20 | 11 | 1 | 307 | 1 | 299 | 5.60e-158 | 442 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCACTGTTTCAGCTTA+TGG | 0.159665 | 2_2:+51988150 | Msa0256890:CDS |
| CACCAATTGTGGGAAATTTC+AGG | 0.195712 | 2_2:-51988107 | None:intergenic |
| TTATTCTGATTCTGATTGTT+AGG | 0.266258 | 2_2:-51986630 | None:intergenic |
| TGTGGGAAATTTCAGGTTCT+TGG | 0.268740 | 2_2:-51988100 | None:intergenic |
| CAACAACAATAACACTGTTT+TGG | 0.271846 | 2_2:+51986545 | Msa0256890:CDS |
| AGTGTTATTGTTGTTGTTGT+TGG | 0.323696 | 2_2:-51986538 | None:intergenic |
| GGTTGAGAGTGATGAAGATT+TGG | 0.342640 | 2_2:-51986753 | None:intergenic |
| AGCTCTTTAGAAGGCTCAAA+AGG | 0.358727 | 2_2:-51986720 | None:intergenic |
| AACCTGAAATTTCCCACAAT+TGG | 0.372059 | 2_2:+51988105 | Msa0256890:CDS |
| GGTGGTGGTAACTATGGATA+TGG | 0.380084 | 2_2:+51986666 | Msa0256890:CDS |
| TCAACTCCTACACCTCTTAG+TGG | 0.420541 | 2_2:-51986333 | None:intergenic |
| ATCAGAATCAGAATAACAAC+AGG | 0.420921 | 2_2:+51986637 | Msa0256890:CDS |
| GTCGTTGGTGGTGGTAACTA+TGG | 0.424677 | 2_2:+51986660 | Msa0256890:CDS |
| ATTGAAGAGAGCTCTTTAGA+AGG | 0.427011 | 2_2:-51986729 | None:intergenic |
| GCTTGTTCCAACGTTGGTGC+TGG | 0.445647 | 2_2:+51986597 | Msa0256890:CDS |
| AGAAGCAGCTTCACCAATTG+TGG | 0.451010 | 2_2:-51988118 | None:intergenic |
| TCATGAACATGATGATGATT+AGG | 0.458805 | 2_2:-51987524 | None:intergenic |
| GAGAGGAGCTAGAAACCCTT+TGG | 0.463191 | 2_2:+51987493 | Msa0256890:CDS |
| AGGTTGTTGCTGTGCATAGG+AGG | 0.469491 | 2_2:+51987995 | Msa0256890:CDS |
| ACCTTGAGGCAAAGATCAAA+AGG | 0.476163 | 2_2:-51986774 | None:intergenic |
| GTTAGAGAAGCAGAGGATAG+AGG | 0.478278 | 2_2:+51986359 | Msa0256890:CDS |
| GAAGCAGAGGATAGAGGCAT+TGG | 0.478285 | 2_2:+51986365 | Msa0256890:CDS |
| GGTAACTATGGATATGGATC+TGG | 0.489747 | 2_2:+51986672 | Msa0256890:CDS |
| TCAGAAAACACGTTTGAATG+AGG | 0.499550 | 2_2:+51987457 | Msa0256890:intron |
| AGGAGGGGAAGTTCTTCATC+AGG | 0.500625 | 2_2:+51988012 | Msa0256890:CDS |
| TTGGAACAAGCTCCAACAAA+AGG | 0.504592 | 2_2:-51986585 | None:intergenic |
| TCATCAAGATTGTGATGAGT+TGG | 0.506524 | 2_2:-51987593 | None:intergenic |
| CTAGAAACCCTTTGGAGGCA+TGG | 0.527762 | 2_2:+51987501 | Msa0256890:CDS |
| GAGGAGAGTAATGTAATGAG+AGG | 0.529842 | 2_2:+51987476 | Msa0256890:CDS |
| AACAACAGGGTCGTTGGTGG+TGG | 0.531578 | 2_2:+51986651 | Msa0256890:CDS |
| CAGAATAACAACAGGGTCGT+TGG | 0.533700 | 2_2:+51986645 | Msa0256890:CDS |
| GTTCCAACGTTGGTGCTGGA+TGG | 0.535707 | 2_2:+51986601 | Msa0256890:CDS |
| TGATGTTGAGGAAACTGAAA+TGG | 0.535711 | 2_2:-51986486 | None:intergenic |
| CTCACTGTTTCAGCTTATGG+TGG | 0.545279 | 2_2:+51988153 | Msa0256890:CDS |
| AAGTTCTTCATCAGGAGGGA+AGG | 0.555848 | 2_2:+51988020 | Msa0256890:CDS |
| TTGAACAGTTAGAGAAGCAG+AGG | 0.558284 | 2_2:+51986352 | Msa0256890:CDS |
| GATTAGGCCATGCCTCCAAA+GGG | 0.558465 | 2_2:-51987508 | None:intergenic |
| GGATAAGCAGAAAGAACAGA+AGG | 0.566886 | 2_2:-51987572 | None:intergenic |
| GCTCTTTAGAAGGCTCAAAA+GGG | 0.569253 | 2_2:-51986719 | None:intergenic |
| TGATTAGGCCATGCCTCCAA+AGG | 0.575637 | 2_2:-51987509 | None:intergenic |
| GGTTGTTGCTGTGCATAGGA+GGG | 0.577962 | 2_2:+51987996 | Msa0256890:CDS |
| AATAACAACAGGGTCGTTGG+TGG | 0.579550 | 2_2:+51986648 | Msa0256890:CDS |
| GTTGGAGCTTGTTCCAACGT+TGG | 0.579969 | 2_2:+51986591 | Msa0256890:CDS |
| ATTTGCTGTTGATGATGTTG+AGG | 0.585953 | 2_2:-51986498 | None:intergenic |
| TTGGTGAGAAAAGCTGAAGC+TGG | 0.589265 | 2_2:+51986384 | Msa0256890:CDS |
| GTTGTTGATGAGGATGATCA+AGG | 0.590020 | 2_2:-51986419 | None:intergenic |
| TTGTGTTGTAAAGTGTGTGG+AGG | 0.590206 | 2_2:+51987975 | Msa0256890:intron |
| AGGAGCTAGAAACCCTTTGG+AGG | 0.592534 | 2_2:+51987496 | Msa0256890:CDS |
| TGGAGGTTGTTGCTGTGCAT+AGG | 0.593913 | 2_2:+51987992 | Msa0256890:CDS |
| GCAGAAAGAACAGAAGGTTG+AGG | 0.608248 | 2_2:-51987566 | None:intergenic |
| GTTGTTGCTGTGCATAGGAG+GGG | 0.608997 | 2_2:+51987997 | Msa0256890:CDS |
| GAAGCAGCTTCACCAATTGT+GGG | 0.613866 | 2_2:-51988117 | None:intergenic |
| GGAAACTGAAATGGCCCAGT+TGG | 0.639292 | 2_2:-51986477 | None:intergenic |
| AACTCATCACAATCTTGATG+AGG | 0.642648 | 2_2:+51987595 | Msa0256890:CDS |
| AGGGGAAGTTCTTCATCAGG+AGG | 0.645014 | 2_2:+51988015 | Msa0256890:CDS |
| AATCCATCCAGCACCAACGT+TGG | 0.649199 | 2_2:-51986604 | None:intergenic |
| GGGGAAGTTCTTCATCAGGA+GGG | 0.656793 | 2_2:+51988016 | Msa0256890:CDS |
| TCAGAATCAGAATAACAACA+GGG | 0.760807 | 2_2:+51986638 | Msa0256890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGATTAAATAATTAGATA+TGG | - | chr2_2:51987783-51987802 | None:intergenic | 10.0% |
| !! | ATTAAATTAAACATTGTATA+TGG | - | chr2_2:51987859-51987878 | None:intergenic | 10.0% |
| !! | TTAGATTAAATAATTAGATA+TGG | - | chr2_2:51987783-51987802 | None:intergenic | 10.0% |
| !! | ATTAAATTAAACATTGTATA+TGG | - | chr2_2:51987859-51987878 | None:intergenic | 10.0% |
| !! | ATAAAATATATTATACCTTG+AGG | - | chr2_2:51986791-51986810 | None:intergenic | 15.0% |
| !!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_2:51987120-51987139 | Msa0256890:intron | 15.0% |
| !!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_2:51987719-51987738 | Msa0256890:intron | 15.0% |
| !!! | TTTTCAATTTTTCTAAGTTT+AGG | + | chr2_2:51987901-51987920 | Msa0256890:intron | 15.0% |
| !!! | TTTCAATTTTTCTAAGTTTA+GGG | + | chr2_2:51987902-51987921 | Msa0256890:intron | 15.0% |
| !! | TTTCTGAATTAAAAAATTGA+TGG | + | chr2_2:51987935-51987954 | Msa0256890:intron | 15.0% |
| !! | ATAAAATATATTATACCTTG+AGG | - | chr2_2:51986791-51986810 | None:intergenic | 15.0% |
| !!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_2:51987120-51987139 | Msa0256890:intron | 15.0% |
| !!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_2:51987719-51987738 | Msa0256890:intron | 15.0% |
| !!! | TTTTCAATTTTTCTAAGTTT+AGG | + | chr2_2:51987901-51987920 | Msa0256890:intron | 15.0% |
| !!! | TTTCAATTTTTCTAAGTTTA+GGG | + | chr2_2:51987902-51987921 | Msa0256890:intron | 15.0% |
| !! | TTTCTGAATTAAAAAATTGA+TGG | + | chr2_2:51987935-51987954 | Msa0256890:intron | 15.0% |
| !! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_2:51987092-51987111 | None:intergenic | 20.0% |
| !! | TTAACATTAATACCAACAAA+AGG | - | chr2_2:51987229-51987248 | None:intergenic | 20.0% |
| !! | TTAACACTAATATCAACAAA+AGG | - | chr2_2:51987358-51987377 | None:intergenic | 20.0% |
| !! | TTAGAAAAATTGAAAACACT+TGG | - | chr2_2:51987897-51987916 | None:intergenic | 20.0% |
| !!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_2:51988063-51988082 | Msa0256890:CDS | 20.0% |
| !! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_2:51987092-51987111 | None:intergenic | 20.0% |
| !! | TTAACATTAATACCAACAAA+AGG | - | chr2_2:51987229-51987248 | None:intergenic | 20.0% |
| !! | TTAACACTAATATCAACAAA+AGG | - | chr2_2:51987358-51987377 | None:intergenic | 20.0% |
| !! | TTAGAAAAATTGAAAACACT+TGG | - | chr2_2:51987897-51987916 | None:intergenic | 20.0% |
| !!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_2:51988063-51988082 | Msa0256890:CDS | 20.0% |
| ! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_2:51986283-51986302 | Msa0256890:CDS | 25.0% |
| ! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_2:51986294-51986313 | Msa0256890:CDS | 25.0% |
| ! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_2:51986633-51986652 | None:intergenic | 25.0% |
| ! | ACATTGATATGATTAGATGA+TGG | + | chr2_2:51986871-51986890 | Msa0256890:intron | 25.0% |
| !! | AATGTTCTTATACCTTTTGT+TGG | + | chr2_2:51987214-51987233 | Msa0256890:intron | 25.0% |
| ! | GTCAAAAAAAAATCCACAAA+AGG | - | chr2_2:51987328-51987347 | None:intergenic | 25.0% |
| ! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_2:51986283-51986302 | Msa0256890:CDS | 25.0% |
| ! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_2:51986294-51986313 | Msa0256890:CDS | 25.0% |
| ! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_2:51986633-51986652 | None:intergenic | 25.0% |
| ! | ACATTGATATGATTAGATGA+TGG | + | chr2_2:51986871-51986890 | Msa0256890:intron | 25.0% |
| !! | AATGTTCTTATACCTTTTGT+TGG | + | chr2_2:51987214-51987233 | Msa0256890:intron | 25.0% |
| ! | GTCAAAAAAAAATCCACAAA+AGG | - | chr2_2:51987328-51987347 | None:intergenic | 25.0% |
| GAAAACCAAGCAAAAAACAA+AGG | + | chr2_2:51986282-51986301 | Msa0256890:CDS | 30.0% | |
| ! | AGTGTTATTGTTGTTGTTGT+TGG | - | chr2_2:51986541-51986560 | None:intergenic | 30.0% |
| ! | CAACAACAATAACACTGTTT+TGG | + | chr2_2:51986545-51986564 | Msa0256890:CDS | 30.0% |
| !!! | AACAATAACACTGTTTTGGT+TGG | + | chr2_2:51986549-51986568 | Msa0256890:CDS | 30.0% |
| ATCAGAATCAGAATAACAAC+AGG | + | chr2_2:51986637-51986656 | Msa0256890:CDS | 30.0% | |
| TCAGAATCAGAATAACAACA+GGG | + | chr2_2:51986638-51986657 | Msa0256890:CDS | 30.0% | |
| AAAAAATCCACAAAAGGTAG+AGG | - | chr2_2:51987322-51987341 | None:intergenic | 30.0% | |
| ! | TCATGAACATGATGATGATT+AGG | - | chr2_2:51987527-51987546 | None:intergenic | 30.0% |
| ! | CATCATGTTCATGATTTTCT+TGG | + | chr2_2:51987533-51987552 | Msa0256890:CDS | 30.0% |
| ! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_2:51987972-51987991 | Msa0256890:intron | 30.0% |
| GAAAACCAAGCAAAAAACAA+AGG | + | chr2_2:51986282-51986301 | Msa0256890:CDS | 30.0% | |
| ! | AGTGTTATTGTTGTTGTTGT+TGG | - | chr2_2:51986541-51986560 | None:intergenic | 30.0% |
| ! | CAACAACAATAACACTGTTT+TGG | + | chr2_2:51986545-51986564 | Msa0256890:CDS | 30.0% |
| !!! | AACAATAACACTGTTTTGGT+TGG | + | chr2_2:51986549-51986568 | Msa0256890:CDS | 30.0% |
| ATCAGAATCAGAATAACAAC+AGG | + | chr2_2:51986637-51986656 | Msa0256890:CDS | 30.0% | |
| TCAGAATCAGAATAACAACA+GGG | + | chr2_2:51986638-51986657 | Msa0256890:CDS | 30.0% | |
| AAAAAATCCACAAAAGGTAG+AGG | - | chr2_2:51987322-51987341 | None:intergenic | 30.0% | |
| ! | TCATGAACATGATGATGATT+AGG | - | chr2_2:51987527-51987546 | None:intergenic | 30.0% |
| ! | CATCATGTTCATGATTTTCT+TGG | + | chr2_2:51987533-51987552 | Msa0256890:CDS | 30.0% |
| ! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_2:51987972-51987991 | Msa0256890:intron | 30.0% |
| !!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_2:51986280-51986299 | None:intergenic | 35.0% |
| !!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_2:51986290-51986309 | None:intergenic | 35.0% |
| !!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_2:51986327-51986346 | None:intergenic | 35.0% |
| ! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_2:51986327-51986346 | Msa0256890:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGTTGATG+AGG | - | chr2_2:51986432-51986451 | None:intergenic | 35.0% |
| !!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_2:51986444-51986463 | Msa0256890:CDS | 35.0% |
| TGATGTTGAGGAAACTGAAA+TGG | - | chr2_2:51986489-51986508 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_2:51986501-51986520 | None:intergenic | 35.0% |
| ! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_2:51986573-51986592 | Msa0256890:CDS | 35.0% |
| ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_2:51986732-51986751 | None:intergenic | 35.0% | |
| ! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_2:51987312-51987331 | Msa0256890:intron | 35.0% |
| TCAGAAAACACGTTTGAATG+AGG | + | chr2_2:51987457-51987476 | Msa0256890:intron | 35.0% | |
| ! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_2:51987536-51987555 | Msa0256890:CDS | 35.0% |
| TCATCAAGATTGTGATGAGT+TGG | - | chr2_2:51987596-51987615 | None:intergenic | 35.0% | |
| AACTCATCACAATCTTGATG+AGG | + | chr2_2:51987595-51987614 | Msa0256890:CDS | 35.0% | |
| AACCTGAAATTTCCCACAAT+TGG | + | chr2_2:51988105-51988124 | Msa0256890:CDS | 35.0% | |
| !!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_2:51986280-51986299 | None:intergenic | 35.0% |
| !!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_2:51986290-51986309 | None:intergenic | 35.0% |
| !!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_2:51986327-51986346 | None:intergenic | 35.0% |
| ! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_2:51986327-51986346 | Msa0256890:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGTTGATG+AGG | - | chr2_2:51986432-51986451 | None:intergenic | 35.0% |
| !!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_2:51986444-51986463 | Msa0256890:CDS | 35.0% |
| TGATGTTGAGGAAACTGAAA+TGG | - | chr2_2:51986489-51986508 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_2:51986501-51986520 | None:intergenic | 35.0% |
| ! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_2:51986573-51986592 | Msa0256890:CDS | 35.0% |
| ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_2:51986732-51986751 | None:intergenic | 35.0% | |
| ! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_2:51987312-51987331 | Msa0256890:intron | 35.0% |
| TCAGAAAACACGTTTGAATG+AGG | + | chr2_2:51987457-51987476 | Msa0256890:intron | 35.0% | |
| ! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_2:51987536-51987555 | Msa0256890:CDS | 35.0% |
| TCATCAAGATTGTGATGAGT+TGG | - | chr2_2:51987596-51987615 | None:intergenic | 35.0% | |
| AACTCATCACAATCTTGATG+AGG | + | chr2_2:51987595-51987614 | Msa0256890:CDS | 35.0% | |
| AACCTGAAATTTCCCACAAT+TGG | + | chr2_2:51988105-51988124 | Msa0256890:CDS | 35.0% | |
| GCACCAAAAAAACCACTAAG+AGG | + | chr2_2:51986321-51986340 | Msa0256890:CDS | 40.0% | |
| TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_2:51986352-51986371 | Msa0256890:CDS | 40.0% | |
| ! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_2:51986422-51986441 | None:intergenic | 40.0% |
| ! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_2:51986462-51986481 | Msa0256890:CDS | 40.0% |
| ! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_2:51986463-51986482 | Msa0256890:CDS | 40.0% |
| !!! | AACACTGTTTTGGTTGGTTC+TGG | + | chr2_2:51986555-51986574 | Msa0256890:CDS | 40.0% |
| TTGGAACAAGCTCCAACAAA+AGG | - | chr2_2:51986588-51986607 | None:intergenic | 40.0% | |
| GGTAACTATGGATATGGATC+TGG | + | chr2_2:51986672-51986691 | Msa0256890:CDS | 40.0% | |
| ! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_2:51986722-51986741 | None:intergenic | 40.0% |
| ! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_2:51986723-51986742 | None:intergenic | 40.0% |
| GGTTGAGAGTGATGAAGATT+TGG | - | chr2_2:51986756-51986775 | None:intergenic | 40.0% | |
| ! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_2:51986773-51986792 | Msa0256890:CDS | 40.0% |
| ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_2:51986777-51986796 | None:intergenic | 40.0% | |
| GAGGAGAGTAATGTAATGAG+AGG | + | chr2_2:51987476-51987495 | Msa0256890:CDS | 40.0% | |
| GGATAAGCAGAAAGAACAGA+AGG | - | chr2_2:51987575-51987594 | None:intergenic | 40.0% | |
| TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_2:51987975-51987994 | Msa0256890:intron | 40.0% | |
| ! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_2:51988035-51988054 | Msa0256890:CDS | 40.0% |
| !! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_2:51988103-51988122 | None:intergenic | 40.0% |
| CACCAATTGTGGGAAATTTC+AGG | - | chr2_2:51988110-51988129 | None:intergenic | 40.0% | |
| TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_2:51988150-51988169 | Msa0256890:CDS | 40.0% | |
| GCACCAAAAAAACCACTAAG+AGG | + | chr2_2:51986321-51986340 | Msa0256890:CDS | 40.0% | |
| TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_2:51986352-51986371 | Msa0256890:CDS | 40.0% | |
| ! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_2:51986422-51986441 | None:intergenic | 40.0% |
| ! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_2:51986462-51986481 | Msa0256890:CDS | 40.0% |
| ! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_2:51986463-51986482 | Msa0256890:CDS | 40.0% |
| !!! | AACACTGTTTTGGTTGGTTC+TGG | + | chr2_2:51986555-51986574 | Msa0256890:CDS | 40.0% |
| TTGGAACAAGCTCCAACAAA+AGG | - | chr2_2:51986588-51986607 | None:intergenic | 40.0% | |
| GGTAACTATGGATATGGATC+TGG | + | chr2_2:51986672-51986691 | Msa0256890:CDS | 40.0% | |
| ! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_2:51986722-51986741 | None:intergenic | 40.0% |
| ! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_2:51986723-51986742 | None:intergenic | 40.0% |
| GGTTGAGAGTGATGAAGATT+TGG | - | chr2_2:51986756-51986775 | None:intergenic | 40.0% | |
| ! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_2:51986773-51986792 | Msa0256890:CDS | 40.0% |
| ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_2:51986777-51986796 | None:intergenic | 40.0% | |
| GAGGAGAGTAATGTAATGAG+AGG | + | chr2_2:51987476-51987495 | Msa0256890:CDS | 40.0% | |
| GGATAAGCAGAAAGAACAGA+AGG | - | chr2_2:51987575-51987594 | None:intergenic | 40.0% | |
| TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_2:51987975-51987994 | Msa0256890:intron | 40.0% | |
| ! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_2:51988035-51988054 | Msa0256890:CDS | 40.0% |
| !! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_2:51988103-51988122 | None:intergenic | 40.0% |
| CACCAATTGTGGGAAATTTC+AGG | - | chr2_2:51988110-51988129 | None:intergenic | 40.0% | |
| TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_2:51988150-51988169 | Msa0256890:CDS | 40.0% | |
| TCAACTCCTACACCTCTTAG+TGG | - | chr2_2:51986336-51986355 | None:intergenic | 45.0% | |
| GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_2:51986359-51986378 | Msa0256890:CDS | 45.0% | |
| TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_2:51986384-51986403 | Msa0256890:CDS | 45.0% | |
| CAGAATAACAACAGGGTCGT+TGG | + | chr2_2:51986645-51986664 | Msa0256890:CDS | 45.0% | |
| AATAACAACAGGGTCGTTGG+TGG | + | chr2_2:51986648-51986667 | Msa0256890:CDS | 45.0% | |
| ! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_2:51986666-51986685 | Msa0256890:CDS | 45.0% |
| GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_2:51987569-51987588 | None:intergenic | 45.0% | |
| AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_2:51988020-51988039 | Msa0256890:CDS | 45.0% | |
| GAAGCAGCTTCACCAATTGT+GGG | - | chr2_2:51988120-51988139 | None:intergenic | 45.0% | |
| AGAAGCAGCTTCACCAATTG+TGG | - | chr2_2:51988121-51988140 | None:intergenic | 45.0% | |
| CTCACTGTTTCAGCTTATGG+TGG | + | chr2_2:51988153-51988172 | Msa0256890:CDS | 45.0% | |
| TCAACTCCTACACCTCTTAG+TGG | - | chr2_2:51986336-51986355 | None:intergenic | 45.0% | |
| GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_2:51986359-51986378 | Msa0256890:CDS | 45.0% | |
| TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_2:51986384-51986403 | Msa0256890:CDS | 45.0% | |
| CAGAATAACAACAGGGTCGT+TGG | + | chr2_2:51986645-51986664 | Msa0256890:CDS | 45.0% | |
| AATAACAACAGGGTCGTTGG+TGG | + | chr2_2:51986648-51986667 | Msa0256890:CDS | 45.0% | |
| ! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_2:51986666-51986685 | Msa0256890:CDS | 45.0% |
| GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_2:51987569-51987588 | None:intergenic | 45.0% | |
| AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_2:51988020-51988039 | Msa0256890:CDS | 45.0% | |
| GAAGCAGCTTCACCAATTGT+GGG | - | chr2_2:51988120-51988139 | None:intergenic | 45.0% | |
| AGAAGCAGCTTCACCAATTG+TGG | - | chr2_2:51988121-51988140 | None:intergenic | 45.0% | |
| CTCACTGTTTCAGCTTATGG+TGG | + | chr2_2:51988153-51988172 | Msa0256890:CDS | 45.0% | |
| !! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_2:51986274-51986293 | None:intergenic | 50.0% |
| ! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_2:51986365-51986384 | Msa0256890:CDS | 50.0% |
| GGAAACTGAAATGGCCCAGT+TGG | - | chr2_2:51986480-51986499 | None:intergenic | 50.0% | |
| ! | GTTGGAGCTTGTTCCAACGT+TGG | + | chr2_2:51986591-51986610 | Msa0256890:CDS | 50.0% |
| AATCCATCCAGCACCAACGT+TGG | - | chr2_2:51986607-51986626 | None:intergenic | 50.0% | |
| !! | GTCGTTGGTGGTGGTAACTA+TGG | + | chr2_2:51986660-51986679 | Msa0256890:CDS | 50.0% |
| GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_2:51987493-51987512 | Msa0256890:CDS | 50.0% | |
| AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_2:51987496-51987515 | Msa0256890:CDS | 50.0% | |
| ! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_2:51987501-51987520 | Msa0256890:CDS | 50.0% |
| GATTAGGCCATGCCTCCAAA+GGG | - | chr2_2:51987511-51987530 | None:intergenic | 50.0% | |
| TGATTAGGCCATGCCTCCAA+AGG | - | chr2_2:51987512-51987531 | None:intergenic | 50.0% | |
| TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_2:51987992-51988011 | Msa0256890:CDS | 50.0% | |
| AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_2:51987995-51988014 | Msa0256890:CDS | 50.0% | |
| GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_2:51987996-51988015 | Msa0256890:CDS | 50.0% | |
| GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_2:51987997-51988016 | Msa0256890:CDS | 50.0% | |
| AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_2:51988012-51988031 | Msa0256890:CDS | 50.0% | |
| AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_2:51988015-51988034 | Msa0256890:CDS | 50.0% | |
| GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_2:51988016-51988035 | Msa0256890:CDS | 50.0% | |
| !! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_2:51986274-51986293 | None:intergenic | 50.0% |
| ! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_2:51986365-51986384 | Msa0256890:CDS | 50.0% |
| GGAAACTGAAATGGCCCAGT+TGG | - | chr2_2:51986480-51986499 | None:intergenic | 50.0% | |
| ! | GTTGGAGCTTGTTCCAACGT+TGG | + | chr2_2:51986591-51986610 | Msa0256890:CDS | 50.0% |
| AATCCATCCAGCACCAACGT+TGG | - | chr2_2:51986607-51986626 | None:intergenic | 50.0% | |
| !! | GTCGTTGGTGGTGGTAACTA+TGG | + | chr2_2:51986660-51986679 | Msa0256890:CDS | 50.0% |
| GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_2:51987493-51987512 | Msa0256890:CDS | 50.0% | |
| AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_2:51987496-51987515 | Msa0256890:CDS | 50.0% | |
| ! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_2:51987501-51987520 | Msa0256890:CDS | 50.0% |
| GATTAGGCCATGCCTCCAAA+GGG | - | chr2_2:51987511-51987530 | None:intergenic | 50.0% | |
| TGATTAGGCCATGCCTCCAA+AGG | - | chr2_2:51987512-51987531 | None:intergenic | 50.0% | |
| TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_2:51987992-51988011 | Msa0256890:CDS | 50.0% | |
| AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_2:51987995-51988014 | Msa0256890:CDS | 50.0% | |
| GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_2:51987996-51988015 | Msa0256890:CDS | 50.0% | |
| GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_2:51987997-51988016 | Msa0256890:CDS | 50.0% | |
| AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_2:51988012-51988031 | Msa0256890:CDS | 50.0% | |
| AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_2:51988015-51988034 | Msa0256890:CDS | 50.0% | |
| GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_2:51988016-51988035 | Msa0256890:CDS | 50.0% | |
| GCTTGTTCCAACGTTGGTGC+TGG | + | chr2_2:51986597-51986616 | Msa0256890:CDS | 55.0% | |
| !! | GTTCCAACGTTGGTGCTGGA+TGG | + | chr2_2:51986601-51986620 | Msa0256890:CDS | 55.0% |
| ! | AACAACAGGGTCGTTGGTGG+TGG | + | chr2_2:51986651-51986670 | Msa0256890:CDS | 55.0% |
| GCTTGTTCCAACGTTGGTGC+TGG | + | chr2_2:51986597-51986616 | Msa0256890:CDS | 55.0% | |
| !! | GTTCCAACGTTGGTGCTGGA+TGG | + | chr2_2:51986601-51986620 | Msa0256890:CDS | 55.0% |
| ! | AACAACAGGGTCGTTGGTGG+TGG | + | chr2_2:51986651-51986670 | Msa0256890:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 51986267 | 51988227 | 51986267 | ID=Msa0256890;Name=Msa0256890 |
| chr2_2 | mRNA | 51986267 | 51988227 | 51986267 | ID=Msa0256890-mRNA-1;Parent=Msa0256890;Name=Msa0256890-mRNA-1;_AED=0.00;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|307 |
| chr2_2 | exon | 51986267 | 51986794 | 51986267 | ID=Msa0256890-mRNA-1:exon:15684;Parent=Msa0256890-mRNA-1 |
| chr2_2 | exon | 51987461 | 51987616 | 51987461 | ID=Msa0256890-mRNA-1:exon:15685;Parent=Msa0256890-mRNA-1 |
| chr2_2 | exon | 51987988 | 51988227 | 51987988 | ID=Msa0256890-mRNA-1:exon:15686;Parent=Msa0256890-mRNA-1 |
| chr2_2 | CDS | 51986267 | 51986794 | 51986267 | ID=Msa0256890-mRNA-1:cds;Parent=Msa0256890-mRNA-1 |
| chr2_2 | CDS | 51987461 | 51987616 | 51987461 | ID=Msa0256890-mRNA-1:cds;Parent=Msa0256890-mRNA-1 |
| chr2_2 | CDS | 51987988 | 51988227 | 51987988 | ID=Msa0256890-mRNA-1:cds;Parent=Msa0256890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
