Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257850 | KEH38903.1 | 75.248 | 101 | 14 | 1 | 2 | 91 | 19 | 119 | 4.83e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257850 | A0A072VBY3 | 75.248 | 101 | 14 | 1 | 2 | 91 | 19 | 119 | 2.31e-46 | 157 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0257850 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257850 | MtrunA17_Chr2g0320521 | 75.248 | 101 | 14 | 1 | 2 | 91 | 21 | 121 | 4.86e-50 | 157 |
| Msa0257850 | MtrunA17_Chr4g0020811 | 61.386 | 101 | 28 | 1 | 2 | 91 | 21 | 121 | 8.53e-36 | 119 |
| Msa0257850 | MtrunA17_Chr2g0308401 | 61.386 | 101 | 28 | 1 | 2 | 91 | 19 | 119 | 1.17e-35 | 118 |
| Msa0257850 | MtrunA17_Chr2g0320551 | 52.525 | 99 | 36 | 1 | 2 | 89 | 19 | 117 | 2.15e-31 | 108 |
| Msa0257850 | MtrunA17_Chr2g0320561 | 52.632 | 95 | 34 | 1 | 2 | 85 | 19 | 113 | 1.67e-29 | 105 |
| Msa0257850 | MtrunA17_Chr5g0411151 | 42.683 | 82 | 35 | 2 | 1 | 71 | 48 | 128 | 1.06e-15 | 69.3 |
| Msa0257850 | MtrunA17_Chr1g0179781 | 41.176 | 85 | 39 | 1 | 3 | 76 | 22 | 106 | 1.11e-15 | 68.6 |
| Msa0257850 | MtrunA17_Chr5g0395181 | 45.122 | 82 | 33 | 2 | 1 | 71 | 34 | 114 | 1.71e-15 | 68.2 |
| Msa0257850 | MtrunA17_Chr7g0265291 | 42.529 | 87 | 37 | 2 | 3 | 76 | 22 | 108 | 2.03e-14 | 65.1 |
| Msa0257850 | MtrunA17_Chr4g0040071 | 42.683 | 82 | 35 | 2 | 1 | 71 | 28 | 108 | 2.26e-13 | 62.8 |
| Msa0257850 | MtrunA17_Chr8g0366581 | 40.244 | 82 | 37 | 2 | 1 | 71 | 46 | 126 | 1.70e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257850 | AT4G17900.2 | 46.250 | 80 | 31 | 2 | 3 | 71 | 35 | 113 | 2.49e-15 | 68.2 |
| Msa0257850 | AT4G17900.1 | 46.250 | 80 | 31 | 2 | 3 | 71 | 49 | 127 | 2.74e-15 | 68.2 |
| Msa0257850 | AT1G43000.2 | 42.683 | 82 | 35 | 2 | 1 | 71 | 29 | 109 | 5.92e-15 | 67.4 |
| Msa0257850 | AT1G43000.1 | 42.683 | 82 | 35 | 2 | 1 | 71 | 22 | 102 | 6.49e-15 | 67.0 |
| Msa0257850 | AT1G32700.1 | 42.683 | 82 | 35 | 2 | 1 | 71 | 25 | 105 | 6.94e-14 | 64.3 |
| Msa0257850 | AT1G21000.2 | 39.024 | 82 | 38 | 2 | 1 | 71 | 26 | 106 | 3.23e-12 | 60.1 |
| Msa0257850 | AT1G21000.1 | 39.024 | 82 | 38 | 2 | 1 | 71 | 29 | 109 | 3.52e-12 | 60.1 |
| Msa0257850 | AT1G76590.1 | 35.366 | 82 | 41 | 2 | 1 | 71 | 31 | 111 | 7.77e-11 | 56.6 |
Find 11 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATAAGATTGGTATAAT+TGG | 0.240667 | 2_2:-53804136 | Msa0257850:CDS |
| TTTATGCAAGATCCGCAAAA+TGG | 0.319542 | 2_2:+53804490 | None:intergenic |
| CAATCTTATTCCTCATAGAT+TGG | 0.344916 | 2_2:+53804146 | None:intergenic |
| TACAAACATTTGGACATTCT+AGG | 0.347126 | 2_2:-53804229 | Msa0257850:CDS |
| GATTGAGATTTACAAACATT+TGG | 0.367665 | 2_2:-53804239 | Msa0257850:CDS |
| AATCTTATTCCTCATAGATT+GGG | 0.430616 | 2_2:+53804147 | None:intergenic |
| GGCTTTATTCCCAATCTATG+AGG | 0.493751 | 2_2:-53804156 | Msa0257850:CDS |
| CAATCTATGAGGAATAAGAT+TGG | 0.532302 | 2_2:-53804145 | Msa0257850:CDS |
| TCTAGGAATTCAAACGTATG+TGG | 0.541101 | 2_2:-53804212 | Msa0257850:CDS |
| ATTGGTATAATTGGTTGTAG+TGG | 0.583108 | 2_2:-53804127 | Msa0257850:CDS |
| CATTTGTATTCATAAACAAG+AGG | 0.583718 | 2_2:-53804177 | Msa0257850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATATATATATATAA+GGG | - | chr2_2:53804225-53804244 | Msa0257850:CDS | 0.0% |
| !!! | AAATATAATTTATTTTTAAT+AGG | + | chr2_2:53805160-53805179 | None:intergenic | 0.0% |
| !! | TTATATATATATATATATAA+GGG | - | chr2_2:53804225-53804244 | Msa0257850:CDS | 0.0% |
| !!! | AAATATAATTTATTTTTAAT+AGG | + | chr2_2:53805160-53805179 | None:intergenic | 0.0% |
| !!! | CATTTAATTTTATTAAAAGA+TGG | + | chr2_2:53804200-53804219 | None:intergenic | 10.0% |
| !!! | CATCTTTTAATAAAATTAAA+TGG | - | chr2_2:53804198-53804217 | Msa0257850:CDS | 10.0% |
| !!! | TTTTTTTTTTAATTCACATA+CGG | + | chr2_2:53804600-53804619 | None:intergenic | 10.0% |
| !!! | TTGTTTCTTAAAAAAAAAAA+CGG | - | chr2_2:53805202-53805221 | Msa0257850:intron | 10.0% |
| !!! | TTTGTATTTTTTATTTTTTG+AGG | - | chr2_2:53805442-53805461 | Msa0257850:intron | 10.0% |
| !! | CAAAAATAAAAGAATTAAAT+TGG | + | chr2_2:53805829-53805848 | None:intergenic | 10.0% |
| !!! | CATTTAATTTTATTAAAAGA+TGG | + | chr2_2:53804200-53804219 | None:intergenic | 10.0% |
| !!! | CATCTTTTAATAAAATTAAA+TGG | - | chr2_2:53804198-53804217 | Msa0257850:CDS | 10.0% |
| !!! | TTTTTTTTTTAATTCACATA+CGG | + | chr2_2:53804600-53804619 | None:intergenic | 10.0% |
| !!! | TTGTTTCTTAAAAAAAAAAA+CGG | - | chr2_2:53805202-53805221 | Msa0257850:intron | 10.0% |
| !!! | TTTGTATTTTTTATTTTTTG+AGG | - | chr2_2:53805442-53805461 | Msa0257850:intron | 10.0% |
| !! | CAAAAATAAAAGAATTAAAT+TGG | + | chr2_2:53805829-53805848 | None:intergenic | 10.0% |
| !!! | TTATTTTCAAATGAAAAGAT+TGG | + | chr2_2:53805336-53805355 | None:intergenic | 15.0% |
| !!! | TTATTTGATTTTTTTGACTT+TGG | - | chr2_2:53806163-53806182 | Msa0257850:intron | 15.0% |
| !!! | TATTTGATTTTTTTGACTTT+GGG | - | chr2_2:53806164-53806183 | Msa0257850:intron | 15.0% |
| !! | ATTTATAATTGCAAATATCA+AGG | + | chr2_2:53806203-53806222 | None:intergenic | 15.0% |
| !!! | TTATTTTCAAATGAAAAGAT+TGG | + | chr2_2:53805336-53805355 | None:intergenic | 15.0% |
| !!! | TTATTTGATTTTTTTGACTT+TGG | - | chr2_2:53806163-53806182 | Msa0257850:intron | 15.0% |
| !!! | TATTTGATTTTTTTGACTTT+GGG | - | chr2_2:53806164-53806183 | Msa0257850:intron | 15.0% |
| !! | ATTTATAATTGCAAATATCA+AGG | + | chr2_2:53806203-53806222 | None:intergenic | 15.0% |
| !! | CTTGTTAATGATTCAAAAAA+TGG | - | chr2_2:53804274-53804293 | Msa0257850:intron | 20.0% |
| !! | TTTGTTTATTGTAGATCTAA+TGG | - | chr2_2:53804496-53804515 | Msa0257850:CDS | 20.0% |
| !!! | TGAGTAATCTATATTTTCAA+AGG | + | chr2_2:53804540-53804559 | None:intergenic | 20.0% |
| !! | CTTGTTAATGATTCAAAAAA+TGG | - | chr2_2:53804274-53804293 | Msa0257850:intron | 20.0% |
| !! | TTTGTTTATTGTAGATCTAA+TGG | - | chr2_2:53804496-53804515 | Msa0257850:CDS | 20.0% |
| !!! | TGAGTAATCTATATTTTCAA+AGG | + | chr2_2:53804540-53804559 | None:intergenic | 20.0% |
| !!! | AATTTTTTGGAGAAATGGAT+TGG | + | chr2_2:53804347-53804366 | None:intergenic | 25.0% |
| ! | AATCCATTTCTCCAAAAAAT+TGG | - | chr2_2:53804346-53804365 | Msa0257850:intron | 25.0% |
| !! | CTTTTAGTGAAATGAGTATT+GGG | + | chr2_2:53804819-53804838 | None:intergenic | 25.0% |
| !! | ACTTTTAGTGAAATGAGTAT+TGG | + | chr2_2:53804820-53804839 | None:intergenic | 25.0% |
| ! | AAAATACAAAAGAAGATACG+AGG | + | chr2_2:53805432-53805451 | None:intergenic | 25.0% |
| ! | TCTGTCAAATATGTAAATCA+CGG | - | chr2_2:53805554-53805573 | Msa0257850:intron | 25.0% |
| ! | TATGTAAATCACGGTTTATT+CGG | - | chr2_2:53805563-53805582 | Msa0257850:intron | 25.0% |
| ! | AACTTTCAACGCTATTATAA+TGG | - | chr2_2:53805776-53805795 | Msa0257850:intron | 25.0% |
| !! | ATTGGCATTGAAATTTAAGT+GGG | + | chr2_2:53805811-53805830 | None:intergenic | 25.0% |
| !! | AATTGGCATTGAAATTTAAG+TGG | + | chr2_2:53805812-53805831 | None:intergenic | 25.0% |
| !!! | TTGCAAGAAAATTTTTCAGT+CGG | + | chr2_2:53805903-53805922 | None:intergenic | 25.0% |
| ! | TTGCAATTATAAATCATGTG+AGG | - | chr2_2:53806209-53806228 | Msa0257850:intron | 25.0% |
| ! | GATTGAGATTTACAAACATT+TGG | - | chr2_2:53806261-53806280 | Msa0257850:intron | 25.0% |
| ! | CATTTGTATTCATAAACAAG+AGG | - | chr2_2:53806323-53806342 | Msa0257850:intron | 25.0% |
| ! | AATCTTATTCCTCATAGATT+GGG | + | chr2_2:53806356-53806375 | None:intergenic | 25.0% |
| ! | AGGAATAAGATTGGTATAAT+TGG | - | chr2_2:53806364-53806383 | Msa0257850:intron | 25.0% |
| !!! | AATTTTTTGGAGAAATGGAT+TGG | + | chr2_2:53804347-53804366 | None:intergenic | 25.0% |
| ! | AATCCATTTCTCCAAAAAAT+TGG | - | chr2_2:53804346-53804365 | Msa0257850:intron | 25.0% |
| !! | CTTTTAGTGAAATGAGTATT+GGG | + | chr2_2:53804819-53804838 | None:intergenic | 25.0% |
| !! | ACTTTTAGTGAAATGAGTAT+TGG | + | chr2_2:53804820-53804839 | None:intergenic | 25.0% |
| ! | AAAATACAAAAGAAGATACG+AGG | + | chr2_2:53805432-53805451 | None:intergenic | 25.0% |
| ! | TCTGTCAAATATGTAAATCA+CGG | - | chr2_2:53805554-53805573 | Msa0257850:intron | 25.0% |
| ! | TATGTAAATCACGGTTTATT+CGG | - | chr2_2:53805563-53805582 | Msa0257850:intron | 25.0% |
| ! | AACTTTCAACGCTATTATAA+TGG | - | chr2_2:53805776-53805795 | Msa0257850:intron | 25.0% |
| !! | ATTGGCATTGAAATTTAAGT+GGG | + | chr2_2:53805811-53805830 | None:intergenic | 25.0% |
| !! | AATTGGCATTGAAATTTAAG+TGG | + | chr2_2:53805812-53805831 | None:intergenic | 25.0% |
| !!! | TTGCAAGAAAATTTTTCAGT+CGG | + | chr2_2:53805903-53805922 | None:intergenic | 25.0% |
| ! | TTGCAATTATAAATCATGTG+AGG | - | chr2_2:53806209-53806228 | Msa0257850:intron | 25.0% |
| ! | GATTGAGATTTACAAACATT+TGG | - | chr2_2:53806261-53806280 | Msa0257850:intron | 25.0% |
| ! | CATTTGTATTCATAAACAAG+AGG | - | chr2_2:53806323-53806342 | Msa0257850:intron | 25.0% |
| ! | AATCTTATTCCTCATAGATT+GGG | + | chr2_2:53806356-53806375 | None:intergenic | 25.0% |
| ! | AGGAATAAGATTGGTATAAT+TGG | - | chr2_2:53806364-53806383 | Msa0257850:intron | 25.0% |
| AATCATTAACAAGTGTCCTT+AGG | + | chr2_2:53804267-53804286 | None:intergenic | 30.0% | |
| !! | AAGTGAAAAGTACCATCATA+GGG | - | chr2_2:53804317-53804336 | Msa0257850:intron | 30.0% |
| !!! | AGTCCAATTTTTTGGAGAAA+TGG | + | chr2_2:53804352-53804371 | None:intergenic | 30.0% |
| !!! | CTTCTAGAAGTCCAATTTTT+TGG | + | chr2_2:53804360-53804379 | None:intergenic | 30.0% |
| ! | ACTTCTAGAAGCAATAATAC+TGG | - | chr2_2:53804369-53804388 | Msa0257850:intron | 30.0% |
| TTTATTGTAGATCTAATGGC+TGG | - | chr2_2:53804500-53804519 | Msa0257850:CDS | 30.0% | |
| AAGACTCTATATAGTGACAA+TGG | + | chr2_2:53804784-53804803 | None:intergenic | 30.0% | |
| ! | GAGAAAATTGGTTCTTTGTT+CGG | + | chr2_2:53804930-53804949 | None:intergenic | 30.0% |
| ! | ACAAAGAACCAATTTTCTCT+TGG | - | chr2_2:53804931-53804950 | Msa0257850:intron | 30.0% |
| ! | CAAAGAACCAATTTTCTCTT+GGG | - | chr2_2:53804932-53804951 | Msa0257850:intron | 30.0% |
| AACTATTACCAGTTAAACCT+CGG | + | chr2_2:53804989-53805008 | None:intergenic | 30.0% | |
| AACCTAGCAAAAGAATGAAA+TGG | - | chr2_2:53805285-53805304 | Msa0257850:intron | 30.0% | |
| ACCTAGCAAAAGAATGAAAT+GGG | - | chr2_2:53805286-53805305 | Msa0257850:intron | 30.0% | |
| ATGGGCTTCAATAGTATAAT+AGG | - | chr2_2:53805304-53805323 | Msa0257850:intron | 30.0% | |
| TCAAATGAAAAGATTGGACT+GGG | + | chr2_2:53805330-53805349 | None:intergenic | 30.0% | |
| TTCAAATGAAAAGATTGGAC+TGG | + | chr2_2:53805331-53805350 | None:intergenic | 30.0% | |
| !! | TACACATTGTTGATGGATTA+GGG | + | chr2_2:53805365-53805384 | None:intergenic | 30.0% |
| ACATATTTGACAGAAGAAAG+AGG | + | chr2_2:53805548-53805567 | None:intergenic | 30.0% | |
| TGAAGCAAGGTAATCAAAAT+CGG | + | chr2_2:53805739-53805758 | None:intergenic | 30.0% | |
| ! | ATAGCGTTGAAAGTTGATTT+CGG | + | chr2_2:53805771-53805790 | None:intergenic | 30.0% |
| !!! | AATTGTTGTTTTTGTCGCTT+AGG | - | chr2_2:53805860-53805879 | Msa0257850:intron | 30.0% |
| !! | TGCAAGAAAATTTTTCAGTC+GGG | + | chr2_2:53805902-53805921 | None:intergenic | 30.0% |
| !! | TGAGTGTTGTTTAAAGTGAT+AGG | - | chr2_2:53806065-53806084 | Msa0257850:intron | 30.0% |
| GGTAGATCTATACAATATCT+TGG | - | chr2_2:53806086-53806105 | Msa0257850:intron | 30.0% | |
| TACAAACATTTGGACATTCT+AGG | - | chr2_2:53806271-53806290 | Msa0257850:intron | 30.0% | |
| CAATCTTATTCCTCATAGAT+TGG | + | chr2_2:53806357-53806376 | None:intergenic | 30.0% | |
| CAATCTATGAGGAATAAGAT+TGG | - | chr2_2:53806355-53806374 | Msa0257850:intron | 30.0% | |
| ATTGGTATAATTGGTTGTAG+TGG | - | chr2_2:53806373-53806392 | Msa0257850:intron | 30.0% | |
| AATCATTAACAAGTGTCCTT+AGG | + | chr2_2:53804267-53804286 | None:intergenic | 30.0% | |
| !! | AAGTGAAAAGTACCATCATA+GGG | - | chr2_2:53804317-53804336 | Msa0257850:intron | 30.0% |
| !!! | AGTCCAATTTTTTGGAGAAA+TGG | + | chr2_2:53804352-53804371 | None:intergenic | 30.0% |
| !!! | CTTCTAGAAGTCCAATTTTT+TGG | + | chr2_2:53804360-53804379 | None:intergenic | 30.0% |
| ! | ACTTCTAGAAGCAATAATAC+TGG | - | chr2_2:53804369-53804388 | Msa0257850:intron | 30.0% |
| TTTATTGTAGATCTAATGGC+TGG | - | chr2_2:53804500-53804519 | Msa0257850:CDS | 30.0% | |
| AAGACTCTATATAGTGACAA+TGG | + | chr2_2:53804784-53804803 | None:intergenic | 30.0% | |
| ! | GAGAAAATTGGTTCTTTGTT+CGG | + | chr2_2:53804930-53804949 | None:intergenic | 30.0% |
| ! | ACAAAGAACCAATTTTCTCT+TGG | - | chr2_2:53804931-53804950 | Msa0257850:intron | 30.0% |
| ! | CAAAGAACCAATTTTCTCTT+GGG | - | chr2_2:53804932-53804951 | Msa0257850:intron | 30.0% |
| AACTATTACCAGTTAAACCT+CGG | + | chr2_2:53804989-53805008 | None:intergenic | 30.0% | |
| AACCTAGCAAAAGAATGAAA+TGG | - | chr2_2:53805285-53805304 | Msa0257850:intron | 30.0% | |
| ACCTAGCAAAAGAATGAAAT+GGG | - | chr2_2:53805286-53805305 | Msa0257850:intron | 30.0% | |
| ATGGGCTTCAATAGTATAAT+AGG | - | chr2_2:53805304-53805323 | Msa0257850:intron | 30.0% | |
| TCAAATGAAAAGATTGGACT+GGG | + | chr2_2:53805330-53805349 | None:intergenic | 30.0% | |
| TTCAAATGAAAAGATTGGAC+TGG | + | chr2_2:53805331-53805350 | None:intergenic | 30.0% | |
| !! | TACACATTGTTGATGGATTA+GGG | + | chr2_2:53805365-53805384 | None:intergenic | 30.0% |
| ACATATTTGACAGAAGAAAG+AGG | + | chr2_2:53805548-53805567 | None:intergenic | 30.0% | |
| TGAAGCAAGGTAATCAAAAT+CGG | + | chr2_2:53805739-53805758 | None:intergenic | 30.0% | |
| ! | ATAGCGTTGAAAGTTGATTT+CGG | + | chr2_2:53805771-53805790 | None:intergenic | 30.0% |
| !!! | AATTGTTGTTTTTGTCGCTT+AGG | - | chr2_2:53805860-53805879 | Msa0257850:intron | 30.0% |
| !! | TGCAAGAAAATTTTTCAGTC+GGG | + | chr2_2:53805902-53805921 | None:intergenic | 30.0% |
| !! | TGAGTGTTGTTTAAAGTGAT+AGG | - | chr2_2:53806065-53806084 | Msa0257850:intron | 30.0% |
| GGTAGATCTATACAATATCT+TGG | - | chr2_2:53806086-53806105 | Msa0257850:intron | 30.0% | |
| TACAAACATTTGGACATTCT+AGG | - | chr2_2:53806271-53806290 | Msa0257850:intron | 30.0% | |
| CAATCTTATTCCTCATAGAT+TGG | + | chr2_2:53806357-53806376 | None:intergenic | 30.0% | |
| CAATCTATGAGGAATAAGAT+TGG | - | chr2_2:53806355-53806374 | Msa0257850:intron | 30.0% | |
| ATTGGTATAATTGGTTGTAG+TGG | - | chr2_2:53806373-53806392 | Msa0257850:intron | 30.0% | |
| !! | CAAGTGAAAAGTACCATCAT+AGG | - | chr2_2:53804316-53804335 | Msa0257850:intron | 35.0% |
| TCTAGAAGCAATAATACTGG+TGG | - | chr2_2:53804372-53804391 | Msa0257850:intron | 35.0% | |
| GATTACTCAAGCAATCTAGA+TGG | - | chr2_2:53804551-53804570 | Msa0257850:CDS | 35.0% | |
| ! | ATGGTTCTATATCCATCACA+TGG | - | chr2_2:53804570-53804589 | Msa0257850:intron | 35.0% |
| TAGAAGATCCAAGTCCTTAT+TGG | - | chr2_2:53804724-53804743 | Msa0257850:intron | 35.0% | |
| AGTCATAGAAGATTAGTGGT+GGG | + | chr2_2:53804750-53804769 | None:intergenic | 35.0% | |
| AAGTCATAGAAGATTAGTGG+TGG | + | chr2_2:53804751-53804770 | None:intergenic | 35.0% | |
| !! | TATAGTGACAATGGTTCTAG+AGG | + | chr2_2:53804775-53804794 | None:intergenic | 35.0% |
| !! | GTGAAATGAGTATTGGGAAT+CGG | + | chr2_2:53804813-53804832 | None:intergenic | 35.0% |
| CAAACCAAGGTAATTAGAAC+CGG | - | chr2_2:53804903-53804922 | Msa0257850:intron | 35.0% | |
| !! | GTACACATTGTTGATGGATT+AGG | + | chr2_2:53805366-53805385 | None:intergenic | 35.0% |
| CATCAAGTACACATTGTTGA+TGG | + | chr2_2:53805372-53805391 | None:intergenic | 35.0% | |
| CATCAACAATGTGTACTTGA+TGG | - | chr2_2:53805370-53805389 | Msa0257850:intron | 35.0% | |
| ATCTGAGAGAAGATAAACCA+TGG | - | chr2_2:53805488-53805507 | Msa0257850:intron | 35.0% | |
| CTGAAAAAACTGGGGAAAAT+CGG | + | chr2_2:53805606-53805625 | None:intergenic | 35.0% | |
| CCAAAAACCTGAAAAAACTG+GGG | + | chr2_2:53805614-53805633 | None:intergenic | 35.0% | |
| GCCAAAAACCTGAAAAAACT+GGG | + | chr2_2:53805615-53805634 | None:intergenic | 35.0% | |
| TGTGATTCAAACCGGAAAAT+TGG | + | chr2_2:53805637-53805656 | None:intergenic | 35.0% | |
| !! | TTTTGTCGCTTAGGATATGA+TGG | - | chr2_2:53805869-53805888 | Msa0257850:intron | 35.0% |
| !! | GCAAGAAAATTTTTCAGTCG+GGG | + | chr2_2:53805901-53805920 | None:intergenic | 35.0% |
| !!! | GCTCATTTTTTGACTCGTTT+GGG | + | chr2_2:53805958-53805977 | None:intergenic | 35.0% |
| ! | TGCAATGACAATCCATTTTG+CGG | - | chr2_2:53805998-53806017 | Msa0257850:intron | 35.0% |
| TTTATGCAAGATCCGCAAAA+TGG | + | chr2_2:53806013-53806032 | None:intergenic | 35.0% | |
| CACTTTAAACAACACTCACT+AGG | + | chr2_2:53806063-53806082 | None:intergenic | 35.0% | |
| TCTAGGAATTCAAACGTATG+TGG | - | chr2_2:53806288-53806307 | Msa0257850:intron | 35.0% | |
| !! | CAAGTGAAAAGTACCATCAT+AGG | - | chr2_2:53804316-53804335 | Msa0257850:intron | 35.0% |
| TCTAGAAGCAATAATACTGG+TGG | - | chr2_2:53804372-53804391 | Msa0257850:intron | 35.0% | |
| GATTACTCAAGCAATCTAGA+TGG | - | chr2_2:53804551-53804570 | Msa0257850:CDS | 35.0% | |
| ! | ATGGTTCTATATCCATCACA+TGG | - | chr2_2:53804570-53804589 | Msa0257850:intron | 35.0% |
| TAGAAGATCCAAGTCCTTAT+TGG | - | chr2_2:53804724-53804743 | Msa0257850:intron | 35.0% | |
| AGTCATAGAAGATTAGTGGT+GGG | + | chr2_2:53804750-53804769 | None:intergenic | 35.0% | |
| AAGTCATAGAAGATTAGTGG+TGG | + | chr2_2:53804751-53804770 | None:intergenic | 35.0% | |
| !! | TATAGTGACAATGGTTCTAG+AGG | + | chr2_2:53804775-53804794 | None:intergenic | 35.0% |
| !! | GTGAAATGAGTATTGGGAAT+CGG | + | chr2_2:53804813-53804832 | None:intergenic | 35.0% |
| CAAACCAAGGTAATTAGAAC+CGG | - | chr2_2:53804903-53804922 | Msa0257850:intron | 35.0% | |
| !! | GTACACATTGTTGATGGATT+AGG | + | chr2_2:53805366-53805385 | None:intergenic | 35.0% |
| CATCAAGTACACATTGTTGA+TGG | + | chr2_2:53805372-53805391 | None:intergenic | 35.0% | |
| CATCAACAATGTGTACTTGA+TGG | - | chr2_2:53805370-53805389 | Msa0257850:intron | 35.0% | |
| ATCTGAGAGAAGATAAACCA+TGG | - | chr2_2:53805488-53805507 | Msa0257850:intron | 35.0% | |
| CTGAAAAAACTGGGGAAAAT+CGG | + | chr2_2:53805606-53805625 | None:intergenic | 35.0% | |
| CCAAAAACCTGAAAAAACTG+GGG | + | chr2_2:53805614-53805633 | None:intergenic | 35.0% | |
| GCCAAAAACCTGAAAAAACT+GGG | + | chr2_2:53805615-53805634 | None:intergenic | 35.0% | |
| TGTGATTCAAACCGGAAAAT+TGG | + | chr2_2:53805637-53805656 | None:intergenic | 35.0% | |
| !! | TTTTGTCGCTTAGGATATGA+TGG | - | chr2_2:53805869-53805888 | Msa0257850:intron | 35.0% |
| !! | GCAAGAAAATTTTTCAGTCG+GGG | + | chr2_2:53805901-53805920 | None:intergenic | 35.0% |
| !!! | GCTCATTTTTTGACTCGTTT+GGG | + | chr2_2:53805958-53805977 | None:intergenic | 35.0% |
| ! | TGCAATGACAATCCATTTTG+CGG | - | chr2_2:53805998-53806017 | Msa0257850:intron | 35.0% |
| TTTATGCAAGATCCGCAAAA+TGG | + | chr2_2:53806013-53806032 | None:intergenic | 35.0% | |
| CACTTTAAACAACACTCACT+AGG | + | chr2_2:53806063-53806082 | None:intergenic | 35.0% | |
| TCTAGGAATTCAAACGTATG+TGG | - | chr2_2:53806288-53806307 | Msa0257850:intron | 35.0% | |
| TCTTGCTAACAAGTGTCCTA+AGG | - | chr2_2:53804248-53804267 | Msa0257850:intron | 40.0% | |
| GACTTGGATCTTCTATATGC+AGG | + | chr2_2:53804719-53804738 | None:intergenic | 40.0% | |
| GGCAAGTCATAGAAGATTAG+TGG | + | chr2_2:53804754-53804773 | None:intergenic | 40.0% | |
| ! | AATTGGTTCTTTGTTCGGTC+CGG | + | chr2_2:53804925-53804944 | None:intergenic | 40.0% |
| ! | ACCAATTTTCTCTTGGGTTC+AGG | - | chr2_2:53804938-53804957 | Msa0257850:intron | 40.0% |
| ! | CCAATTTTCTCTTGGGTTCA+GGG | - | chr2_2:53804939-53804958 | Msa0257850:intron | 40.0% |
| ! | GCCCATTTCATTCTTTTGCT+AGG | + | chr2_2:53805290-53805309 | None:intergenic | 40.0% |
| ATCTACTTCCTGCACTTATG+TGG | - | chr2_2:53805465-53805484 | Msa0257850:intron | 40.0% | |
| ACAAGCATGAAAGAGATCCA+TGG | + | chr2_2:53805508-53805527 | None:intergenic | 40.0% | |
| GACAGAAGAAAGAGGAAAAG+TGG | + | chr2_2:53805540-53805559 | None:intergenic | 40.0% | |
| AAAAAACTGGGGAAAATCGG+CGG | + | chr2_2:53805603-53805622 | None:intergenic | 40.0% | |
| !! | CGATTTTCCCCAGTTTTTTC+AGG | - | chr2_2:53805604-53805623 | Msa0257850:intron | 40.0% |
| !!! | CCCCAGTTTTTTCAGGTTTT+TGG | - | chr2_2:53805611-53805630 | Msa0257850:intron | 40.0% |
| GGCCAAAAACCTGAAAAAAC+TGG | + | chr2_2:53805616-53805635 | None:intergenic | 40.0% | |
| !!! | CAGGTTTTTGGCCAATTTTC+CGG | - | chr2_2:53805623-53805642 | Msa0257850:intron | 40.0% |
| CCAAGAACTGTGATTCAAAC+CGG | + | chr2_2:53805645-53805664 | None:intergenic | 40.0% | |
| TGAATCACAGTTCTTGGACT+AGG | - | chr2_2:53805648-53805667 | Msa0257850:intron | 40.0% | |
| TAATCAAAATCGGACAGGAC+CGG | + | chr2_2:53805729-53805748 | None:intergenic | 40.0% | |
| CAAGGTAATCAAAATCGGAC+AGG | + | chr2_2:53805734-53805753 | None:intergenic | 40.0% | |
| ! | TCGGAGAATAGTTTGAAGCA+AGG | + | chr2_2:53805752-53805771 | None:intergenic | 40.0% |
| !!! | CGCTCATTTTTTGACTCGTT+TGG | + | chr2_2:53805959-53805978 | None:intergenic | 40.0% |
| !! | GGCTTTATTCCCAATCTATG+AGG | - | chr2_2:53806344-53806363 | Msa0257850:intron | 40.0% |
| TCTTGCTAACAAGTGTCCTA+AGG | - | chr2_2:53804248-53804267 | Msa0257850:intron | 40.0% | |
| GACTTGGATCTTCTATATGC+AGG | + | chr2_2:53804719-53804738 | None:intergenic | 40.0% | |
| GGCAAGTCATAGAAGATTAG+TGG | + | chr2_2:53804754-53804773 | None:intergenic | 40.0% | |
| ! | AATTGGTTCTTTGTTCGGTC+CGG | + | chr2_2:53804925-53804944 | None:intergenic | 40.0% |
| ! | ACCAATTTTCTCTTGGGTTC+AGG | - | chr2_2:53804938-53804957 | Msa0257850:intron | 40.0% |
| ! | CCAATTTTCTCTTGGGTTCA+GGG | - | chr2_2:53804939-53804958 | Msa0257850:intron | 40.0% |
| ! | GCCCATTTCATTCTTTTGCT+AGG | + | chr2_2:53805290-53805309 | None:intergenic | 40.0% |
| ATCTACTTCCTGCACTTATG+TGG | - | chr2_2:53805465-53805484 | Msa0257850:intron | 40.0% | |
| ACAAGCATGAAAGAGATCCA+TGG | + | chr2_2:53805508-53805527 | None:intergenic | 40.0% | |
| GACAGAAGAAAGAGGAAAAG+TGG | + | chr2_2:53805540-53805559 | None:intergenic | 40.0% | |
| AAAAAACTGGGGAAAATCGG+CGG | + | chr2_2:53805603-53805622 | None:intergenic | 40.0% | |
| !! | CGATTTTCCCCAGTTTTTTC+AGG | - | chr2_2:53805604-53805623 | Msa0257850:intron | 40.0% |
| !!! | CCCCAGTTTTTTCAGGTTTT+TGG | - | chr2_2:53805611-53805630 | Msa0257850:intron | 40.0% |
| GGCCAAAAACCTGAAAAAAC+TGG | + | chr2_2:53805616-53805635 | None:intergenic | 40.0% | |
| !!! | CAGGTTTTTGGCCAATTTTC+CGG | - | chr2_2:53805623-53805642 | Msa0257850:intron | 40.0% |
| CCAAGAACTGTGATTCAAAC+CGG | + | chr2_2:53805645-53805664 | None:intergenic | 40.0% | |
| TGAATCACAGTTCTTGGACT+AGG | - | chr2_2:53805648-53805667 | Msa0257850:intron | 40.0% | |
| TAATCAAAATCGGACAGGAC+CGG | + | chr2_2:53805729-53805748 | None:intergenic | 40.0% | |
| CAAGGTAATCAAAATCGGAC+AGG | + | chr2_2:53805734-53805753 | None:intergenic | 40.0% | |
| ! | TCGGAGAATAGTTTGAAGCA+AGG | + | chr2_2:53805752-53805771 | None:intergenic | 40.0% |
| !!! | CGCTCATTTTTTGACTCGTT+TGG | + | chr2_2:53805959-53805978 | None:intergenic | 40.0% |
| !! | GGCTTTATTCCCAATCTATG+AGG | - | chr2_2:53806344-53806363 | Msa0257850:intron | 40.0% |
| !! | AGATTAGTGGTGGGCCAATA+AGG | + | chr2_2:53804741-53804760 | None:intergenic | 45.0% |
| CTCTCTCTCTCTTCAAACCA+AGG | - | chr2_2:53804890-53804909 | Msa0257850:intron | 45.0% | |
| CCCTGAACCCAAGAGAAAAT+TGG | + | chr2_2:53804942-53804961 | None:intergenic | 45.0% | |
| AGATACGAGGAAGCAGAGAT+GGG | + | chr2_2:53805419-53805438 | None:intergenic | 45.0% | |
| AAGATACGAGGAAGCAGAGA+TGG | + | chr2_2:53805420-53805439 | None:intergenic | 45.0% | |
| TCTCAGATCCACATAAGTGC+AGG | + | chr2_2:53805476-53805495 | None:intergenic | 45.0% | |
| ! | CCGGTTTGAATCACAGTTCT+TGG | - | chr2_2:53805642-53805661 | Msa0257850:intron | 45.0% |
| ! | ATCACAGTTCTTGGACTAGG+CGG | - | chr2_2:53805651-53805670 | Msa0257850:intron | 45.0% |
| ! | CCGATTTGACCAGTTCAACT+GGG | + | chr2_2:53805706-53805725 | None:intergenic | 45.0% |
| CCCAGTTGAACTGGTCAAAT+CGG | - | chr2_2:53805703-53805722 | Msa0257850:intron | 45.0% | |
| !! | AGATTAGTGGTGGGCCAATA+AGG | + | chr2_2:53804741-53804760 | None:intergenic | 45.0% |
| CTCTCTCTCTCTTCAAACCA+AGG | - | chr2_2:53804890-53804909 | Msa0257850:intron | 45.0% | |
| CCCTGAACCCAAGAGAAAAT+TGG | + | chr2_2:53804942-53804961 | None:intergenic | 45.0% | |
| AGATACGAGGAAGCAGAGAT+GGG | + | chr2_2:53805419-53805438 | None:intergenic | 45.0% | |
| AAGATACGAGGAAGCAGAGA+TGG | + | chr2_2:53805420-53805439 | None:intergenic | 45.0% | |
| TCTCAGATCCACATAAGTGC+AGG | + | chr2_2:53805476-53805495 | None:intergenic | 45.0% | |
| ! | CCGGTTTGAATCACAGTTCT+TGG | - | chr2_2:53805642-53805661 | Msa0257850:intron | 45.0% |
| ! | ATCACAGTTCTTGGACTAGG+CGG | - | chr2_2:53805651-53805670 | Msa0257850:intron | 45.0% |
| ! | CCGATTTGACCAGTTCAACT+GGG | + | chr2_2:53805706-53805725 | None:intergenic | 45.0% |
| CCCAGTTGAACTGGTCAAAT+CGG | - | chr2_2:53805703-53805722 | Msa0257850:intron | 45.0% | |
| !!! | ATCTTTTAATAAAATTAAAT+GGG | - | chr2_2:53804199-53804218 | Msa0257850:CDS | 5.0% |
| !! | CTTATATATATATATATATA+AGG | - | chr2_2:53804224-53804243 | Msa0257850:CDS | 5.0% |
| !!! | ATCTTTTAATAAAATTAAAT+GGG | - | chr2_2:53804199-53804218 | Msa0257850:CDS | 5.0% |
| !! | CTTATATATATATATATATA+AGG | - | chr2_2:53804224-53804243 | Msa0257850:CDS | 5.0% |
| ! | TGGATTGGAGCACCCTATGA+TGG | + | chr2_2:53804332-53804351 | None:intergenic | 50.0% |
| ACATACGGTGAGCCATGTGA+TGG | + | chr2_2:53804585-53804604 | None:intergenic | 50.0% | |
| ! | CGGTCCGGTTCTAATTACCT+TGG | + | chr2_2:53804910-53804929 | None:intergenic | 50.0% |
| CTCTTGGGTTCAGGGTTCAA+AGG | - | chr2_2:53804947-53804966 | Msa0257850:intron | 50.0% | |
| TGGGTTCAGGGTTCAAAGGT+TGG | - | chr2_2:53804951-53804970 | Msa0257850:intron | 50.0% | |
| TCAGGGTTCAAAGGTTGGAC+TGG | - | chr2_2:53804956-53804975 | Msa0257850:intron | 50.0% | |
| GAGCTCAACCGAGGTTTAAC+TGG | - | chr2_2:53804978-53804997 | Msa0257850:intron | 50.0% | |
| !! | TCTTGGACTAGGCGGTTTTC+AGG | - | chr2_2:53805659-53805678 | Msa0257850:intron | 50.0% |
| !! | CTTGGACTAGGCGGTTTTCA+GGG | - | chr2_2:53805660-53805679 | Msa0257850:intron | 50.0% |
| !! | AGGCGGTTTTCAGGGCTAAT+CGG | - | chr2_2:53805668-53805687 | Msa0257850:intron | 50.0% |
| !! | GTTTTCAGGGCTAATCGGAC+CGG | - | chr2_2:53805673-53805692 | Msa0257850:intron | 50.0% |
| AGTTCAACTGGGAACGTGAC+CGG | + | chr2_2:53805695-53805714 | None:intergenic | 50.0% | |
| !! | GCCGATTTGACCAGTTCAAC+TGG | + | chr2_2:53805707-53805726 | None:intergenic | 50.0% |
| GTTGAACTGGTCAAATCGGC+CGG | - | chr2_2:53805707-53805726 | Msa0257850:intron | 50.0% | |
| ! | TGGATTGGAGCACCCTATGA+TGG | + | chr2_2:53804332-53804351 | None:intergenic | 50.0% |
| ACATACGGTGAGCCATGTGA+TGG | + | chr2_2:53804585-53804604 | None:intergenic | 50.0% | |
| ! | CGGTCCGGTTCTAATTACCT+TGG | + | chr2_2:53804910-53804929 | None:intergenic | 50.0% |
| CTCTTGGGTTCAGGGTTCAA+AGG | - | chr2_2:53804947-53804966 | Msa0257850:intron | 50.0% | |
| TGGGTTCAGGGTTCAAAGGT+TGG | - | chr2_2:53804951-53804970 | Msa0257850:intron | 50.0% | |
| TCAGGGTTCAAAGGTTGGAC+TGG | - | chr2_2:53804956-53804975 | Msa0257850:intron | 50.0% | |
| GAGCTCAACCGAGGTTTAAC+TGG | - | chr2_2:53804978-53804997 | Msa0257850:intron | 50.0% | |
| !! | TCTTGGACTAGGCGGTTTTC+AGG | - | chr2_2:53805659-53805678 | Msa0257850:intron | 50.0% |
| !! | CTTGGACTAGGCGGTTTTCA+GGG | - | chr2_2:53805660-53805679 | Msa0257850:intron | 50.0% |
| !! | AGGCGGTTTTCAGGGCTAAT+CGG | - | chr2_2:53805668-53805687 | Msa0257850:intron | 50.0% |
| !! | GTTTTCAGGGCTAATCGGAC+CGG | - | chr2_2:53805673-53805692 | Msa0257850:intron | 50.0% |
| AGTTCAACTGGGAACGTGAC+CGG | + | chr2_2:53805695-53805714 | None:intergenic | 50.0% | |
| !! | GCCGATTTGACCAGTTCAAC+TGG | + | chr2_2:53805707-53805726 | None:intergenic | 50.0% |
| GTTGAACTGGTCAAATCGGC+CGG | - | chr2_2:53805707-53805726 | Msa0257850:intron | 50.0% | |
| !! | GTGGTGGGCCAATAAGGACT+TGG | + | chr2_2:53804735-53804754 | None:intergenic | 55.0% |
| TACGAGGAAGCAGAGATGGG+TGG | + | chr2_2:53805416-53805435 | None:intergenic | 55.0% | |
| !! | GGGAAAATCGGCGGTTTGGT+CGG | + | chr2_2:53805594-53805613 | None:intergenic | 55.0% |
| ACTGGGGAAAATCGGCGGTT+TGG | + | chr2_2:53805598-53805617 | None:intergenic | 55.0% | |
| GGTCACGTTCCCAGTTGAAC+TGG | - | chr2_2:53805694-53805713 | Msa0257850:intron | 55.0% | |
| !! | GTGGTGGGCCAATAAGGACT+TGG | + | chr2_2:53804735-53804754 | None:intergenic | 55.0% |
| TACGAGGAAGCAGAGATGGG+TGG | + | chr2_2:53805416-53805435 | None:intergenic | 55.0% | |
| !! | GGGAAAATCGGCGGTTTGGT+CGG | + | chr2_2:53805594-53805613 | None:intergenic | 55.0% |
| ACTGGGGAAAATCGGCGGTT+TGG | + | chr2_2:53805598-53805617 | None:intergenic | 55.0% | |
| GGTCACGTTCCCAGTTGAAC+TGG | - | chr2_2:53805694-53805713 | Msa0257850:intron | 55.0% | |
| ! | GTTGGACTGGAGCTCAACCG+AGG | - | chr2_2:53804969-53804988 | Msa0257850:intron | 60.0% |
| GAGGAAGCAGAGATGGGTGG+CGG | + | chr2_2:53805413-53805432 | None:intergenic | 60.0% | |
| ! | GTTGGACTGGAGCTCAACCG+AGG | - | chr2_2:53804969-53804988 | Msa0257850:intron | 60.0% |
| GAGGAAGCAGAGATGGGTGG+CGG | + | chr2_2:53805413-53805432 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 53804114 | 53806408 | 53804114 | ID=Msa0257850;Name=Msa0257850 |
| chr2_2 | mRNA | 53804114 | 53806408 | 53804114 | ID=Msa0257850-mRNA-1;Parent=Msa0257850;Name=Msa0257850-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.66|0|0|3|0|91 |
| chr2_2 | exon | 53806405 | 53806408 | 53806405 | ID=Msa0257850-mRNA-1:exon:16233;Parent=Msa0257850-mRNA-1 |
| chr2_2 | exon | 53804459 | 53804580 | 53804459 | ID=Msa0257850-mRNA-1:exon:16232;Parent=Msa0257850-mRNA-1 |
| chr2_2 | exon | 53804114 | 53804263 | 53804114 | ID=Msa0257850-mRNA-1:exon:16231;Parent=Msa0257850-mRNA-1 |
| chr2_2 | CDS | 53806405 | 53806408 | 53806405 | ID=Msa0257850-mRNA-1:cds;Parent=Msa0257850-mRNA-1 |
| chr2_2 | CDS | 53804459 | 53804580 | 53804459 | ID=Msa0257850-mRNA-1:cds;Parent=Msa0257850-mRNA-1 |
| chr2_2 | CDS | 53804114 | 53804263 | 53804114 | ID=Msa0257850-mRNA-1:cds;Parent=Msa0257850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
