Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258130 | XP_013464830.1 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.02e-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258130 | sp|Q9LXT3|MBF1B_ARATH | 81.159 | 138 | 26 | 0 | 3 | 140 | 5 | 142 | 7.43e-81 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258130 | I3SZT9 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 4.89e-94 | 277 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258130 | TR | MBF1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258130 | MtrunA17_Chr2g0320211 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 9.42e-98 | 277 |
| Msa0258130 | MtrunA17_Chr4g0041301 | 92.754 | 138 | 10 | 0 | 3 | 140 | 5 | 142 | 2.10e-84 | 243 |
| Msa0258130 | MtrunA17_Chr6g0485281 | 50.000 | 114 | 57 | 0 | 3 | 116 | 10 | 123 | 3.53e-33 | 113 |
| Msa0258130 | MtrunA17_Chr6g0457491 | 90.909 | 55 | 5 | 0 | 86 | 140 | 1 | 55 | 3.81e-29 | 100 |
| Msa0258130 | MtrunA17_Chr7g0275831 | 95.000 | 40 | 2 | 0 | 90 | 129 | 1 | 40 | 1.54e-20 | 79.3 |
| Msa0258130 | MtrunA17_Chr4g0057871 | 55.844 | 77 | 21 | 1 | 30 | 93 | 9 | 85 | 1.94e-18 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258130 | AT3G58680.1 | 81.159 | 138 | 26 | 0 | 3 | 140 | 5 | 142 | 7.55e-82 | 237 |
| Msa0258130 | AT2G42680.1 | 82.609 | 138 | 24 | 0 | 3 | 140 | 5 | 142 | 2.07e-81 | 236 |
| Msa0258130 | AT3G24500.1 | 51.799 | 139 | 65 | 1 | 3 | 139 | 7 | 145 | 2.42e-44 | 142 |
| Msa0258130 | AT3G24500.2 | 44.944 | 89 | 47 | 1 | 3 | 89 | 7 | 95 | 3.52e-17 | 72.0 |
Find 59 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGCTTTGTCATCCTTTC+TGG | 0.124654 | 2_2:+54226077 | None:intergenic |
| TTGCCAATGATCTGCTGATT+TGG | 0.246748 | 2_2:+54222744 | None:intergenic |
| TTTCTTCATGGTTTCGATAT+CGG | 0.259177 | 2_2:+54226032 | None:intergenic |
| ATCCTTTCTGGCAGCGGCGG+TGG | 0.284116 | 2_2:+54226089 | None:intergenic |
| TTGTTGCGTTGAGTCGGTAT+AGG | 0.295025 | 2_2:+54226197 | None:intergenic |
| ATGGTTGAATGGTTTGAATT+TGG | 0.300458 | 2_2:+54226165 | None:intergenic |
| TTTGAACAGGTGAAAGCTTC+AGG | 0.336840 | 2_2:+54222549 | None:intergenic |
| TCATTTCTTCCCACGAAGTT+TGG | 0.355915 | 2_2:+54222701 | None:intergenic |
| TCTGATAGAATCTTGAAATC+TGG | 0.358683 | 2_2:-54222384 | Msa0258130:three_prime_UTR |
| CAGGACCCGTTTCACAAGAT+TGG | 0.366530 | 2_2:-54226140 | Msa0258130:CDS |
| TGTTGCGTTGAGTCGGTATA+GGG | 0.383171 | 2_2:+54226198 | None:intergenic |
| GACTTGTTTGCGCAGATGAT+CGG | 0.384244 | 2_2:-54222989 | Msa0258130:intron |
| GTGATCCAGGAGTACGAGTC+AGG | 0.396136 | 2_2:-54222777 | Msa0258130:CDS |
| TCCTTTCTGGCAGCGGCGGT+GGG | 0.400262 | 2_2:+54226090 | None:intergenic |
| CGGGTCCTGCCATGGTTGAA+TGG | 0.418153 | 2_2:+54226154 | None:intergenic |
| GGCTCCCAATCTTGTGAAAC+GGG | 0.430225 | 2_2:+54226135 | None:intergenic |
| AGAAGCTCAACGTTTCTTCA+TGG | 0.430879 | 2_2:+54226020 | None:intergenic |
| AAATGAGAAAGCTAATTTGA+TGG | 0.438169 | 2_2:-54222684 | Msa0258130:exon |
| GCACTTCATTGAACACTAAG+AGG | 0.438741 | 2_2:-54224531 | Msa0258130:CDS |
| GGCAAGTTGGAGAGAGCTCT+TGG | 0.442294 | 2_2:-54222726 | Msa0258130:CDS |
| AGGACCCGTTTCACAAGATT+GGG | 0.445033 | 2_2:-54226139 | Msa0258130:CDS |
| GTCAACGCCGCTCGTCGTGC+CGG | 0.452741 | 2_2:-54226057 | Msa0258130:CDS |
| AGTAAGCTTCTTGTCCATCC+TGG | 0.456590 | 2_2:+54222932 | None:intergenic |
| GCTTTCTTGCGGAGGACGAC+GGG | 0.457580 | 2_2:+54226114 | None:intergenic |
| ACTTGTTTGCGCAGATGATC+GGG | 0.459972 | 2_2:-54222988 | Msa0258130:intron |
| CTTTCCCTGACTCGTACTCC+TGG | 0.461120 | 2_2:+54222772 | None:intergenic |
| TTGATGGCTGTGTATGTAGT+TGG | 0.462014 | 2_2:-54222668 | Msa0258130:three_prime_UTR |
| ATTCCAAATCAGCAGATCAT+TGG | 0.464427 | 2_2:-54222747 | Msa0258130:CDS |
| TCCCACCGCCGCTGCCAGAA+AGG | 0.472501 | 2_2:-54226091 | Msa0258130:CDS |
| TGAACAGATGATGATAAAAG+TGG | 0.478868 | 2_2:+54226253 | None:intergenic |
| ATAGCTTTCTTGAGTTCAGT+TGG | 0.482895 | 2_2:+54222963 | None:intergenic |
| TAGCTTTCTTGAGTTCAGTT+GGG | 0.492776 | 2_2:+54222964 | None:intergenic |
| GCTCTTGGTGCCAAACTTCG+TGG | 0.495414 | 2_2:-54222711 | Msa0258130:CDS |
| TGAGAAGCCTCAAGTGATCC+AGG | 0.497642 | 2_2:-54222790 | Msa0258130:CDS |
| TCAGCAGATCATTGGCAAGT+TGG | 0.510535 | 2_2:-54222739 | Msa0258130:CDS |
| GGGCTCCCAATCTTGTGAAA+CGG | 0.514365 | 2_2:+54226134 | None:intergenic |
| TTGGGGTTGTTGCGTTGAGT+CGG | 0.518287 | 2_2:+54226191 | None:intergenic |
| AGCTTTCTTGCGGAGGACGA+CGG | 0.519594 | 2_2:+54226113 | None:intergenic |
| GTCATCCTTTCTGGCAGCGG+CGG | 0.526641 | 2_2:+54226086 | None:intergenic |
| CTCTTGGTGCCAAACTTCGT+GGG | 0.530633 | 2_2:-54222710 | Msa0258130:CDS |
| AGAAAGCTATAATGCAAGCC+AGG | 0.541759 | 2_2:-54222950 | Msa0258130:CDS |
| TTTGTCATCCTTTCTGGCAG+CGG | 0.548705 | 2_2:+54226083 | None:intergenic |
| CACTGTTGAAGCTAATCTGA+CGG | 0.550465 | 2_2:-54222635 | Msa0258130:three_prime_UTR |
| AATGATCTGCTGATTTGGAA+TGG | 0.551980 | 2_2:+54222749 | None:intergenic |
| AGCTATAATGCAAGCCAGGA+TGG | 0.555000 | 2_2:-54222946 | Msa0258130:CDS |
| CGGCGGTGGGAGCTTTCTTG+CGG | 0.555292 | 2_2:+54226103 | None:intergenic |
| CATGGTTTCGATATCGGCAC+CGG | 0.557535 | 2_2:+54226038 | None:intergenic |
| TCAAACCATTCAACCATGGC+AGG | 0.558509 | 2_2:-54226159 | Msa0258130:exon |
| GCATGTCCAATCCCTTGTCA+CGG | 0.566045 | 2_2:+54222469 | None:intergenic |
| ATCTGACGGCTGTTATGTAG+TGG | 0.575710 | 2_2:-54222621 | Msa0258130:three_prime_UTR |
| CGGTGGGAGCTTTCTTGCGG+AGG | 0.580235 | 2_2:+54226106 | None:intergenic |
| TTGTGAAACGGGTCCTGCCA+TGG | 0.588651 | 2_2:+54226146 | None:intergenic |
| ATCGGCACCGGCACGACGAG+CGG | 0.589916 | 2_2:+54226050 | None:intergenic |
| TGATCCAGGAGTACGAGTCA+GGG | 0.620671 | 2_2:-54222776 | Msa0258130:CDS |
| TCGTACTCCTGGATCACTTG+AGG | 0.629262 | 2_2:+54222783 | None:intergenic |
| GAACACTAAGAGGCTTGATG+AGG | 0.646364 | 2_2:-54224521 | Msa0258130:CDS |
| CATGCAAAAGCAACCAACCA+AGG | 0.651424 | 2_2:+54222580 | None:intergenic |
| GATGGACAAGAAGCTTACTC+AGG | 0.656852 | 2_2:-54222928 | Msa0258130:CDS |
| AAATTCAAACCATTCAACCA+TGG | 0.668938 | 2_2:-54226163 | Msa0258130:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATTTTAATAAACGA+AGG | + | chr2_2:54222697-54222716 | None:intergenic | 10.0% |
| !!! | AAATAATAAATGTTTTTTCT+TGG | - | chr2_2:54222856-54222875 | Msa0258130:intron | 10.0% |
| !!! | TTTTCTTTTCAAATTATTAT+CGG | + | chr2_2:54223033-54223052 | None:intergenic | 10.0% |
| !! | TTGTTTCAATATTATAAAAT+GGG | + | chr2_2:54224178-54224197 | None:intergenic | 10.0% |
| !! | ATTGTTGATATTTCTTATTA+GGG | - | chr2_2:54222772-54222791 | Msa0258130:CDS | 15.0% |
| !!! | GTTGTTTCAATATTATAAAA+TGG | + | chr2_2:54224179-54224198 | None:intergenic | 15.0% |
| !! | AAAATTCATATTCTTTATCT+GGG | - | chr2_2:54224781-54224800 | Msa0258130:intron | 15.0% |
| !! | TTGTAGAAAAATATTTGATT+AGG | + | chr2_2:54225243-54225262 | None:intergenic | 15.0% |
| !! | TTCTATTATAAATTATGAAG+AGG | - | chr2_2:54225296-54225315 | Msa0258130:intron | 15.0% |
| !! | GATTAAAGAAATGAAAGAAA+AGG | + | chr2_2:54222629-54222648 | None:intergenic | 20.0% |
| !!! | TAATTTGTTAAATCACTGTT+TGG | - | chr2_2:54222749-54222768 | Msa0258130:CDS | 20.0% |
| !! | GATTGTTGATATTTCTTATT+AGG | - | chr2_2:54222771-54222790 | Msa0258130:CDS | 20.0% |
| !! | CTATTAATATGATGTGTTTA+AGG | - | chr2_2:54222919-54222938 | Msa0258130:CDS | 20.0% |
| !!! | TATGTTTTCATATGTTATCT+TGG | - | chr2_2:54223215-54223234 | Msa0258130:intron | 20.0% |
| !! | GAAAAAAATAATAGAGTAAC+CGG | + | chr2_2:54224152-54224171 | None:intergenic | 20.0% |
| !! | TTCAATATTATAAAATGGGA+AGG | + | chr2_2:54224174-54224193 | None:intergenic | 20.0% |
| !! | ATATCTTCCATAATTAATTG+TGG | - | chr2_2:54224603-54224622 | Msa0258130:intron | 20.0% |
| !! | ATGAATTCCACAATTAATTA+TGG | + | chr2_2:54224613-54224632 | None:intergenic | 20.0% |
| !!! | ACAATATTTTTTTATTAGCC+TGG | - | chr2_2:54224681-54224700 | Msa0258130:intron | 20.0% |
| !! | GAAAATTCATATTCTTTATC+TGG | - | chr2_2:54224780-54224799 | Msa0258130:intron | 20.0% |
| !! | AAAAATATTTGATTAGGATG+GGG | + | chr2_2:54225237-54225256 | None:intergenic | 20.0% |
| !! | GAAAAATATTTGATTAGGAT+GGG | + | chr2_2:54225238-54225257 | None:intergenic | 20.0% |
| !! | AGAAAAATATTTGATTAGGA+TGG | + | chr2_2:54225239-54225258 | None:intergenic | 20.0% |
| !!! | TTTATATATTTTACTGTCCT+TGG | - | chr2_2:54226024-54226043 | Msa0258130:intron | 20.0% |
| !!! | ATGGTTTGAATTTGGTTTTT+GGG | + | chr2_2:54222451-54222470 | None:intergenic | 25.0% |
| !!! | AATGGTTTGAATTTGGTTTT+TGG | + | chr2_2:54222452-54222471 | None:intergenic | 25.0% |
| ! | TTTCAATAATCCAGAGTTTA+GGG | + | chr2_2:54223366-54223385 | None:intergenic | 25.0% |
| !! | TTTTCAATAATCCAGAGTTT+AGG | + | chr2_2:54223367-54223386 | None:intergenic | 25.0% |
| ! | TATAACACGAGATAAAAGAA+AGG | - | chr2_2:54223503-54223522 | Msa0258130:intron | 25.0% |
| ! | TTTATCTCGTGTTATAGAAA+TGG | + | chr2_2:54223168-54223187 | None:intergenic | 25.0% |
| ! | TTACCTATAGATGTATTACT+AGG | - | chr2_2:54224525-54224544 | Msa0258130:CDS | 25.0% |
| !! | TTCATATTCTTTTACTAGCT+TGG | - | chr2_2:54224628-54224647 | Msa0258130:intron | 25.0% |
| ! | TATAATAGAATTGCATTTGC+AGG | + | chr2_2:54225286-54225305 | None:intergenic | 25.0% |
| !! | ATGCATTTTTATAATTGCTG+TGG | + | chr2_2:54225337-54225356 | None:intergenic | 25.0% |
| ! | ACTTATGTATTTACAAAGAG+AGG | - | chr2_2:54225445-54225464 | Msa0258130:intron | 25.0% |
| ! | CTTATGTATTTACAAAGAGA+GGG | - | chr2_2:54225446-54225465 | Msa0258130:intron | 25.0% |
| ! | TTATGTATTTACAAAGAGAG+GGG | - | chr2_2:54225447-54225466 | Msa0258130:intron | 25.0% |
| ! | TCAAGACAAAAAAACATATG+TGG | + | chr2_2:54225755-54225774 | None:intergenic | 25.0% |
| ! | AAATGAGAAAGCTAATTTGA+TGG | - | chr2_2:54225937-54225956 | Msa0258130:intron | 25.0% |
| !! | TAGTTAGTAATTTTCATCTG+TGG | - | chr2_2:54226195-54226214 | Msa0258130:five_prime_UTR | 25.0% |
| TGAACAGATGATGATAAAAG+TGG | + | chr2_2:54222371-54222390 | None:intergenic | 30.0% | |
| !!! | TGGTTTGAATTTGGTTTTTG+GGG | + | chr2_2:54222450-54222469 | None:intergenic | 30.0% |
| ATGGTTGAATGGTTTGAATT+TGG | + | chr2_2:54222459-54222478 | None:intergenic | 30.0% | |
| AAATTCAAACCATTCAACCA+TGG | - | chr2_2:54222458-54222477 | Msa0258130:three_prime_UTR | 30.0% | |
| TTTCTTCATGGTTTCGATAT+CGG | + | chr2_2:54222592-54222611 | None:intergenic | 30.0% | |
| ! | TTCTTGGTGATAATCTTTCA+TGG | - | chr2_2:54222872-54222891 | Msa0258130:intron | 30.0% |
| ! | AATATGATGTGTTTAAGGCA+CGG | - | chr2_2:54222924-54222943 | Msa0258130:CDS | 30.0% |
| TTGAATGTAATCACATACGA+CGG | - | chr2_2:54223071-54223090 | Msa0258130:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCAATCT+TGG | - | chr2_2:54223688-54223707 | Msa0258130:intron | 30.0% |
| AAAGTCCTACGTCAAATTTA+GGG | + | chr2_2:54223840-54223859 | None:intergenic | 30.0% | |
| ! | AAACAACATTTTGCAACTCT+TGG | - | chr2_2:54224192-54224211 | Msa0258130:intron | 30.0% |
| ! | AACAACATTTTGCAACTCTT+GGG | - | chr2_2:54224193-54224212 | Msa0258130:intron | 30.0% |
| ACCAACAAGATATATACACA+GGG | + | chr2_2:54224269-54224288 | None:intergenic | 30.0% | |
| AACCAACAAGATATATACAC+AGG | + | chr2_2:54224270-54224289 | None:intergenic | 30.0% | |
| ! | TTCTAAGTGTTGTCAAATAG+TGG | - | chr2_2:54224406-54224425 | Msa0258130:intron | 30.0% |
| ! | ATAAAGTTTTACTTCCACCA+AGG | + | chr2_2:54224494-54224513 | None:intergenic | 30.0% |
| ACATCTATAGGTAACTTCTA+TGG | + | chr2_2:54224519-54224538 | None:intergenic | 30.0% | |
| ! | TATTACTAGGTGCTAACTTT+TGG | - | chr2_2:54224538-54224557 | Msa0258130:CDS | 30.0% |
| TGGAATATCATAAGACTGTT+TGG | - | chr2_2:54224565-54224584 | Msa0258130:CDS | 30.0% | |
| CTTAATGTGGATATAACATG+TGG | - | chr2_2:54224652-54224671 | Msa0258130:intron | 30.0% | |
| AAATTGAGCAAAGTAAATCC+AGG | + | chr2_2:54224702-54224721 | None:intergenic | 30.0% | |
| ! | GGATTTACTTTGCTCAATTT+TGG | - | chr2_2:54224702-54224721 | Msa0258130:intron | 30.0% |
| GAATATCGTATGAAAGTTCA+TGG | - | chr2_2:54224724-54224743 | Msa0258130:intron | 30.0% | |
| ATATTCTTTATCTGGGCTTT+GGG | - | chr2_2:54224788-54224807 | Msa0258130:intron | 30.0% | |
| ! | CCAAACTATGAAGACATTTT+TGG | + | chr2_2:54224915-54224934 | None:intergenic | 30.0% |
| CCAAAAATGTCTTCATAGTT+TGG | - | chr2_2:54224912-54224931 | Msa0258130:intron | 30.0% | |
| AATGTCCACCAATTATCAAA+GGG | + | chr2_2:54224984-54225003 | None:intergenic | 30.0% | |
| TAATGTCCACCAATTATCAA+AGG | + | chr2_2:54224985-54225004 | None:intergenic | 30.0% | |
| TGTTGTTAAAGGGAATACAT+GGG | + | chr2_2:54225150-54225169 | None:intergenic | 30.0% | |
| ! | TCTGAATCAGTGTTGTTAAA+GGG | + | chr2_2:54225160-54225179 | None:intergenic | 30.0% |
| !! | ATCCTGACTAGAATTTTTAG+TGG | - | chr2_2:54225543-54225562 | Msa0258130:intron | 30.0% |
| TTCCACTAAAAATTCTAGTC+AGG | + | chr2_2:54225548-54225567 | None:intergenic | 30.0% | |
| GGTATGGCTCTTATATAAAA+GGG | + | chr2_2:54225579-54225598 | None:intergenic | 30.0% | |
| AGGTATGGCTCTTATATAAA+AGG | + | chr2_2:54225580-54225599 | None:intergenic | 30.0% | |
| !! | ATAAGCATTCAAGTTGAAAG+AGG | + | chr2_2:54225600-54225619 | None:intergenic | 30.0% |
| GAATGCTTATACATAGTAAC+TGG | - | chr2_2:54225610-54225629 | Msa0258130:intron | 30.0% | |
| ! | TATATTTTACTGTCCTTGGT+TGG | - | chr2_2:54226028-54226047 | Msa0258130:intron | 30.0% |
| TCTGATAGAATCTTGAAATC+TGG | - | chr2_2:54226237-54226256 | Msa0258130:five_prime_UTR | 30.0% | |
| ! | TTCTAAGTATCGTTAACCCT+AGG | - | chr2_2:54222656-54222675 | Msa0258130:three_prime_UTR | 35.0% |
| GAACGAATTTCGAAATCCTA+GGG | + | chr2_2:54222675-54222694 | None:intergenic | 35.0% | |
| ! | AAGCACTAGTCTGACTATTA+AGG | + | chr2_2:54223304-54223323 | None:intergenic | 35.0% |
| TTGAATGTAACCACATGTGT+TGG | - | chr2_2:54223397-54223416 | Msa0258130:intron | 35.0% | |
| !!! | GCTGTTTTTGTAAGCTATCT+TGG | - | chr2_2:54223552-54223571 | Msa0258130:intron | 35.0% |
| AAGCACTTGTATGACTATGA+AGG | + | chr2_2:54223778-54223797 | None:intergenic | 35.0% | |
| ! | AATTTAGGGCATGTTTGGAT+TGG | + | chr2_2:54223826-54223845 | None:intergenic | 35.0% |
| CAAAGTCCTACGTCAAATTT+AGG | + | chr2_2:54223841-54223860 | None:intergenic | 35.0% | |
| CTAAATTTGACGTAGGACTT+TGG | - | chr2_2:54223839-54223858 | Msa0258130:intron | 35.0% | |
| ! | ACAACATTTTGCAACTCTTG+GGG | - | chr2_2:54224194-54224213 | Msa0258130:intron | 35.0% |
| TGTATGTATTCCTAATGTCC+TGG | - | chr2_2:54224238-54224257 | Msa0258130:intron | 35.0% | |
| TCCCTGTGTATATATCTTGT+TGG | - | chr2_2:54224265-54224284 | Msa0258130:intron | 35.0% | |
| ! | AGGTTAGTGCTGTTAAATAG+CGG | - | chr2_2:54224311-54224330 | Msa0258130:intron | 35.0% |
| !!! | TGTTGTCGTTTTGTGATACA+TGG | - | chr2_2:54224378-54224397 | Msa0258130:intron | 35.0% |
| ! | CTACTATTTTCTGCAATCCT+TGG | - | chr2_2:54224474-54224493 | Msa0258130:intron | 35.0% |
| GCACCTAGTAATACATCTAT+AGG | + | chr2_2:54224531-54224550 | None:intergenic | 35.0% | |
| !!! | AGGTGCTAACTTTTGGAATT+TGG | - | chr2_2:54224545-54224564 | Msa0258130:CDS | 35.0% |
| ! | TTACTAGCTTGGACTTAATG+TGG | - | chr2_2:54224639-54224658 | Msa0258130:intron | 35.0% |
| CATATTCTTTATCTGGGCTT+TGG | - | chr2_2:54224787-54224806 | Msa0258130:intron | 35.0% | |
| ATGTCCACCAATTATCAAAG+GGG | + | chr2_2:54224983-54225002 | None:intergenic | 35.0% | |
| GTTGTTAAAGGGAATACATG+GGG | + | chr2_2:54225149-54225168 | None:intergenic | 35.0% | |
| ! | GTGTTGTTAAAGGGAATACA+TGG | + | chr2_2:54225151-54225170 | None:intergenic | 35.0% |
| ! | CTCTGAATCAGTGTTGTTAA+AGG | + | chr2_2:54225161-54225180 | None:intergenic | 35.0% |
| ATTATGAAGAGGTAGTAGTG+TGG | - | chr2_2:54225307-54225326 | Msa0258130:intron | 35.0% | |
| ! | TCTGCTGTTATACCAGTTTT+AGG | - | chr2_2:54225502-54225521 | Msa0258130:intron | 35.0% |
| AATGGATCACAACCTAAAAC+TGG | + | chr2_2:54225517-54225536 | None:intergenic | 35.0% | |
| TCTAGTCAGGATAGAGAAAA+TGG | + | chr2_2:54225535-54225554 | None:intergenic | 35.0% | |
| !! | CATTCAAGTTGAAAGAGGTA+TGG | + | chr2_2:54225595-54225614 | None:intergenic | 35.0% |
| TAGCTTTCTTGAGTTCAGTT+GGG | + | chr2_2:54225660-54225679 | None:intergenic | 35.0% | |
| ATAGCTTTCTTGAGTTCAGT+TGG | + | chr2_2:54225661-54225680 | None:intergenic | 35.0% | |
| !! | AATGATCTGCTGATTTGGAA+TGG | + | chr2_2:54225875-54225894 | None:intergenic | 35.0% |
| ATTCCAAATCAGCAGATCAT+TGG | - | chr2_2:54225874-54225893 | Msa0258130:intron | 35.0% | |
| !!! | TGCAGCATTAAGTTTTGAAC+AGG | + | chr2_2:54226088-54226107 | None:intergenic | 35.0% |
| !! | CTTACTTTTAACCGTGACAA+GGG | - | chr2_2:54226141-54226160 | Msa0258130:CDS | 35.0% |
| AGAAGCTCAACGTTTCTTCA+TGG | + | chr2_2:54222604-54222623 | None:intergenic | 40.0% | |
| GGAACGAATTTCGAAATCCT+AGG | + | chr2_2:54222676-54222695 | None:intergenic | 40.0% | |
| ! | AGTTTAGGGCATGATTGGAT+TGG | + | chr2_2:54223352-54223371 | None:intergenic | 40.0% |
| GTGTCAGTGCTAGAAAATGT+CGG | - | chr2_2:54223423-54223442 | Msa0258130:intron | 40.0% | |
| ! | TTATGATCGAAGGCATGTCT+GGG | + | chr2_2:54223451-54223470 | None:intergenic | 40.0% |
| ATGCCTTCGATCATAAGTGT+TGG | - | chr2_2:54223455-54223474 | Msa0258130:intron | 40.0% | |
| ! | ATGCCTTCGATTAGAAGTGT+TGG | - | chr2_2:54223592-54223611 | Msa0258130:intron | 40.0% |
| ACTCCAACACTTCTAATCGA+AGG | + | chr2_2:54223598-54223617 | None:intergenic | 40.0% | |
| ! | CGTCAAATTTAGGGCATGTT+TGG | + | chr2_2:54223831-54223850 | None:intergenic | 40.0% |
| ACATGCCCTAAATTTGACGT+AGG | - | chr2_2:54223832-54223851 | Msa0258130:intron | 40.0% | |
| GACGTAGGACTTTGGATTAT+TGG | - | chr2_2:54223847-54223866 | Msa0258130:intron | 40.0% | |
| GCACTTCATTGAACACTAAG+AGG | - | chr2_2:54224090-54224109 | Msa0258130:intron | 40.0% | |
| ! | CAACATTTTGCAACTCTTGG+GGG | - | chr2_2:54224195-54224214 | Msa0258130:intron | 40.0% |
| ! | AACATTTTGCAACTCTTGGG+GGG | - | chr2_2:54224196-54224215 | Msa0258130:intron | 40.0% |
| !! | TGGGGGGTTTAACTTTTACA+AGG | - | chr2_2:54224212-54224231 | Msa0258130:intron | 40.0% |
| TATATACACAGGGAAACACC+AGG | + | chr2_2:54224259-54224278 | None:intergenic | 40.0% | |
| ATTTAACAGCACTAACCTCC+AGG | + | chr2_2:54224309-54224328 | None:intergenic | 40.0% | |
| GCCATAGCACTATAGTATAG+CGG | - | chr2_2:54224343-54224362 | Msa0258130:intron | 40.0% | |
| TCCGCTATACTATAGTGCTA+TGG | + | chr2_2:54224347-54224366 | None:intergenic | 40.0% | |
| ! | CTATTTTCTGCAATCCTTGG+TGG | - | chr2_2:54224477-54224496 | Msa0258130:intron | 40.0% |
| ! | CCAATTATCAAAGGGGGTAT+TGG | + | chr2_2:54224976-54224995 | None:intergenic | 40.0% |
| ! | CCAATACCCCCTTTGATAAT+TGG | - | chr2_2:54224973-54224992 | Msa0258130:intron | 40.0% |
| ! | ATACCCCCTTTGATAATTGG+TGG | - | chr2_2:54224976-54224995 | Msa0258130:intron | 40.0% |
| TGTCCACCAATTATCAAAGG+GGG | + | chr2_2:54224982-54225001 | None:intergenic | 40.0% | |
| GTCTAGATTAAGAGCAGTGT+TGG | - | chr2_2:54225005-54225024 | Msa0258130:intron | 40.0% | |
| !! | ATTAAGAGCAGTGTTGGCAA+TGG | - | chr2_2:54225011-54225030 | Msa0258130:intron | 40.0% |
| !!! | GCAAATTTTTTGACAGCCTC+CGG | + | chr2_2:54225116-54225135 | None:intergenic | 40.0% |
| AAAGGGAATACATGGGGAAA+TGG | + | chr2_2:54225143-54225162 | None:intergenic | 40.0% | |
| AGAAAGCTATAATGCAAGCC+AGG | - | chr2_2:54225671-54225690 | Msa0258130:intron | 40.0% | |
| ACATATGTGGTGAGTGAAGT+CGG | + | chr2_2:54225742-54225761 | None:intergenic | 40.0% | |
| ! | TTGCCAATGATCTGCTGATT+TGG | + | chr2_2:54225880-54225899 | None:intergenic | 40.0% |
| TCATTTCTTCCCACGAAGTT+TGG | + | chr2_2:54225923-54225942 | None:intergenic | 40.0% | |
| ! | TTGATGGCTGTGTATGTAGT+TGG | - | chr2_2:54225953-54225972 | Msa0258130:intron | 40.0% |
| CACTGTTGAAGCTAATCTGA+CGG | - | chr2_2:54225986-54226005 | Msa0258130:intron | 40.0% | |
| TTTGAACAGGTGAAAGCTTC+AGG | + | chr2_2:54226075-54226094 | None:intergenic | 40.0% | |
| !! | GCTTACTTTTAACCGTGACA+AGG | - | chr2_2:54226140-54226159 | Msa0258130:CDS | 40.0% |
| ! | TTTTAACCGTGACAAGGGAT+TGG | - | chr2_2:54226146-54226165 | Msa0258130:CDS | 40.0% |
| TGTTGCGTTGAGTCGGTATA+GGG | + | chr2_2:54222426-54222445 | None:intergenic | 45.0% | |
| TTGTTGCGTTGAGTCGGTAT+AGG | + | chr2_2:54222427-54222446 | None:intergenic | 45.0% | |
| TCAAACCATTCAACCATGGC+AGG | - | chr2_2:54222462-54222481 | Msa0258130:three_prime_UTR | 45.0% | |
| AGGACCCGTTTCACAAGATT+GGG | - | chr2_2:54222482-54222501 | Msa0258130:three_prime_UTR | 45.0% | |
| ! | TTTGTCATCCTTTCTGGCAG+CGG | + | chr2_2:54222541-54222560 | None:intergenic | 45.0% |
| ! | GACAGCTTTGTCATCCTTTC+TGG | + | chr2_2:54222547-54222566 | None:intergenic | 45.0% |
| ! | GATGTGTTTAAGGCACGGTA+TGG | - | chr2_2:54222929-54222948 | Msa0258130:CDS | 45.0% |
| TCCAATCATGCCCTAAACTC+TGG | - | chr2_2:54223353-54223372 | Msa0258130:intron | 45.0% | |
| ! | TCCAGAGTTTAGGGCATGAT+TGG | + | chr2_2:54223357-54223376 | None:intergenic | 45.0% |
| ! | TATGATCGAAGGCATGTCTG+GGG | + | chr2_2:54223450-54223469 | None:intergenic | 45.0% |
| ! | CTTATGATCGAAGGCATGTC+TGG | + | chr2_2:54223452-54223471 | None:intergenic | 45.0% |
| GCACCAACACTTATGATCGA+AGG | + | chr2_2:54223461-54223480 | None:intergenic | 45.0% | |
| !!! | CGTTGATTCGCTCCATTTTC+TGG | - | chr2_2:54223994-54224013 | Msa0258130:intron | 45.0% |
| TCAGCACTCTGACCAGAAAA+TGG | + | chr2_2:54224009-54224028 | None:intergenic | 45.0% | |
| !! | GTCAGAGTGCTGATTGTGTT+GGG | - | chr2_2:54224016-54224035 | Msa0258130:intron | 45.0% |
| GAACACTAAGAGGCTTGATG+AGG | - | chr2_2:54224100-54224119 | Msa0258130:intron | 45.0% | |
| ! | GAATTTAGCTCGTGAGTCTC+CGG | - | chr2_2:54224130-54224149 | Msa0258130:intron | 45.0% |
| !! | GTGTTCATATGGCGGAGTTT+TGG | + | chr2_2:54225044-54225063 | None:intergenic | 45.0% |
| GGCATTCCTTCTCAAATTGC+CGG | - | chr2_2:54225094-54225113 | Msa0258130:intron | 45.0% | |
| ATTCCTTCTCAAATTGCCGG+AGG | - | chr2_2:54225097-54225116 | Msa0258130:intron | 45.0% | |
| GCATTTGCAGGCAACAAGAT+AGG | + | chr2_2:54225274-54225293 | None:intergenic | 45.0% | |
| ! | GACTTGTTTGCGCAGATGAT+CGG | - | chr2_2:54225632-54225651 | Msa0258130:intron | 45.0% |
| ACTTGTTTGCGCAGATGATC+GGG | - | chr2_2:54225633-54225652 | Msa0258130:intron | 45.0% | |
| AGCTATAATGCAAGCCAGGA+TGG | - | chr2_2:54225675-54225694 | Msa0258130:intron | 45.0% | |
| AGTAAGCTTCTTGTCCATCC+TGG | + | chr2_2:54225692-54225711 | None:intergenic | 45.0% | |
| GATGGACAAGAAGCTTACTC+AGG | - | chr2_2:54225693-54225712 | Msa0258130:intron | 45.0% | |
| TCAGCAGATCATTGGCAAGT+TGG | - | chr2_2:54225882-54225901 | Msa0258130:intron | 45.0% | |
| ATCTGACGGCTGTTATGTAG+TGG | - | chr2_2:54226000-54226019 | Msa0258130:intron | 45.0% | |
| CATGCAAAAGCAACCAACCA+AGG | + | chr2_2:54226044-54226063 | None:intergenic | 45.0% | |
| TTGGGGTTGTTGCGTTGAGT+CGG | + | chr2_2:54222433-54222452 | None:intergenic | 50.0% | |
| CAGGACCCGTTTCACAAGAT+TGG | - | chr2_2:54222481-54222500 | Msa0258130:three_prime_UTR | 50.0% | |
| GGCTCCCAATCTTGTGAAAC+GGG | + | chr2_2:54222489-54222508 | None:intergenic | 50.0% | |
| GGGCTCCCAATCTTGTGAAA+CGG | + | chr2_2:54222490-54222509 | None:intergenic | 50.0% | |
| CATGGTTTCGATATCGGCAC+CGG | + | chr2_2:54222586-54222605 | None:intergenic | 50.0% | |
| ! | ACGCCTTCGATCAGAAGTGT+CGG | - | chr2_2:54223124-54223143 | Msa0258130:intron | 50.0% |
| CTGACACACACCAACACATG+TGG | + | chr2_2:54223410-54223429 | None:intergenic | 50.0% | |
| !! | GGTCAGAGTGCTGATTGTGT+TGG | - | chr2_2:54224015-54224034 | Msa0258130:intron | 50.0% |
| CAGGGAAACACCAGGACATT+AGG | + | chr2_2:54224251-54224270 | None:intergenic | 50.0% | |
| ! | TTGAAGCATGCGAGTTGACC+TGG | - | chr2_2:54224288-54224307 | Msa0258130:intron | 50.0% |
| !! | TCTGGGCTTTGGGATTACTG+TGG | - | chr2_2:54224798-54224817 | Msa0258130:intron | 50.0% |
| !! | AAGAGCAGTGTTGGCAATGG+TGG | - | chr2_2:54225014-54225033 | Msa0258130:intron | 50.0% |
| TTGAGAAGGAATGCCCACCA+TGG | + | chr2_2:54225089-54225108 | None:intergenic | 50.0% | |
| TGAGAAGCCTCAAGTGATCC+AGG | - | chr2_2:54225831-54225850 | Msa0258130:intron | 50.0% | |
| TCGTACTCCTGGATCACTTG+AGG | + | chr2_2:54225841-54225860 | None:intergenic | 50.0% | |
| ! | TGATCCAGGAGTACGAGTCA+GGG | - | chr2_2:54225845-54225864 | Msa0258130:intron | 50.0% |
| !! | CTCTTGGTGCCAAACTTCGT+GGG | - | chr2_2:54225911-54225930 | Msa0258130:intron | 50.0% |
| GCATGTCCAATCCCTTGTCA+CGG | + | chr2_2:54226155-54226174 | None:intergenic | 50.0% | |
| TTGTGAAACGGGTCCTGCCA+TGG | + | chr2_2:54222478-54222497 | None:intergenic | 55.0% | |
| AGCTTTCTTGCGGAGGACGA+CGG | + | chr2_2:54222511-54222530 | None:intergenic | 55.0% | |
| ! | CTTCTGATCGAAGGCGTGTC+TGG | + | chr2_2:54223121-54223140 | None:intergenic | 55.0% |
| ! | GCACCGACACTTCTGATCGA+AGG | + | chr2_2:54223130-54223149 | None:intergenic | 55.0% |
| ! | AAGCATGCGAGTTGACCTGG+AGG | - | chr2_2:54224291-54224310 | Msa0258130:intron | 55.0% |
| !! | GCAGTGTTGGCAATGGTGGA+AGG | - | chr2_2:54225018-54225037 | Msa0258130:intron | 55.0% |
| TCCGCCATATGAACACGCCA+TGG | - | chr2_2:54225048-54225067 | Msa0258130:intron | 55.0% | |
| GCCATGGCGTGTTCATATGG+CGG | + | chr2_2:54225052-54225071 | None:intergenic | 55.0% | |
| GCCATATGAACACGCCATGG+CGG | - | chr2_2:54225051-54225070 | Msa0258130:intron | 55.0% | |
| CAGCCTCCGGCAATTTGAGA+AGG | + | chr2_2:54225103-54225122 | None:intergenic | 55.0% | |
| ! | GTGATCCAGGAGTACGAGTC+AGG | - | chr2_2:54225844-54225863 | Msa0258130:intron | 55.0% |
| ! | CTTTCCCTGACTCGTACTCC+TGG | + | chr2_2:54225852-54225871 | None:intergenic | 55.0% |
| ! | GGCAAGTTGGAGAGAGCTCT+TGG | - | chr2_2:54225895-54225914 | Msa0258130:intron | 55.0% |
| !! | GCTCTTGGTGCCAAACTTCG+TGG | - | chr2_2:54225910-54225929 | Msa0258130:intron | 55.0% |
| CGGGTCCTGCCATGGTTGAA+TGG | + | chr2_2:54222470-54222489 | None:intergenic | 60.0% | |
| GCTTTCTTGCGGAGGACGAC+GGG | + | chr2_2:54222510-54222529 | None:intergenic | 60.0% | |
| ! | GTCATCCTTTCTGGCAGCGG+CGG | + | chr2_2:54222538-54222557 | None:intergenic | 60.0% |
| GCCGCCATGGCGTGTTCATA+TGG | + | chr2_2:54225055-54225074 | None:intergenic | 60.0% | |
| !! | GCCTATGGTGCTGCCATGGT+GGG | - | chr2_2:54225073-54225092 | Msa0258130:intron | 60.0% |
| CGGTGGGAGCTTTCTTGCGG+AGG | + | chr2_2:54222518-54222537 | None:intergenic | 65.0% | |
| CGGCGGTGGGAGCTTTCTTG+CGG | + | chr2_2:54222521-54222540 | None:intergenic | 65.0% | |
| ! | TCCTTTCTGGCAGCGGCGGT+GGG | + | chr2_2:54222534-54222553 | None:intergenic | 65.0% |
| ! | ATCCTTTCTGGCAGCGGCGG+TGG | + | chr2_2:54222535-54222554 | None:intergenic | 65.0% |
| GAACACGCCATGGCGGCCTA+TGG | - | chr2_2:54225058-54225077 | Msa0258130:intron | 65.0% | |
| !! | GGCCTATGGTGCTGCCATGG+TGG | - | chr2_2:54225072-54225091 | Msa0258130:intron | 65.0% |
| GCCCACCATGGCAGCACCAT+AGG | + | chr2_2:54225077-54225096 | None:intergenic | 65.0% | |
| TCCCACCGCCGCTGCCAGAA+AGG | - | chr2_2:54222530-54222549 | Msa0258130:three_prime_UTR | 70.0% | |
| GTCAACGCCGCTCGTCGTGC+CGG | - | chr2_2:54222564-54222583 | Msa0258130:three_prime_UTR | 70.0% | |
| !! | ATCGGCACCGGCACGACGAG+CGG | + | chr2_2:54222574-54222593 | None:intergenic | 70.0% |
| GGCAGCACCATAGGCCGCCA+TGG | + | chr2_2:54225068-54225087 | None:intergenic | 70.0% | |
| !! | GGCGGCCTATGGTGCTGCCA+TGG | - | chr2_2:54225069-54225088 | Msa0258130:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54222357 | 54226286 | 54222357 | ID=Msa0258130;Name=Msa0258130 |
| chr2_2 | mRNA | 54222357 | 54226286 | 54222357 | ID=Msa0258130-mRNA-1;Parent=Msa0258130;Name=Msa0258130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|1|1|1|1|1|4|344|140 |
| chr2_2 | exon | 54222357 | 54222820 | 54222357 | ID=Msa0258130-mRNA-1:exon:16298;Parent=Msa0258130-mRNA-1 |
| chr2_2 | exon | 54222914 | 54222996 | 54222914 | ID=Msa0258130-mRNA-1:exon:16297;Parent=Msa0258130-mRNA-1 |
| chr2_2 | exon | 54224503 | 54224586 | 54224503 | ID=Msa0258130-mRNA-1:exon:16296;Parent=Msa0258130-mRNA-1 |
| chr2_2 | exon | 54226031 | 54226286 | 54226031 | ID=Msa0258130-mRNA-1:exon:16295;Parent=Msa0258130-mRNA-1 |
| chr2_2 | five_prime_UTR | 54226167 | 54226286 | 54226167 | ID=Msa0258130-mRNA-1:five_prime_utr;Parent=Msa0258130-mRNA-1 |
| chr2_2 | CDS | 54226031 | 54226166 | 54226031 | ID=Msa0258130-mRNA-1:cds;Parent=Msa0258130-mRNA-1 |
| chr2_2 | CDS | 54224503 | 54224586 | 54224503 | ID=Msa0258130-mRNA-1:cds;Parent=Msa0258130-mRNA-1 |
| chr2_2 | CDS | 54222914 | 54222996 | 54222914 | ID=Msa0258130-mRNA-1:cds;Parent=Msa0258130-mRNA-1 |
| chr2_2 | CDS | 54222701 | 54222820 | 54222701 | ID=Msa0258130-mRNA-1:cds;Parent=Msa0258130-mRNA-1 |
| chr2_2 | three_prime_UTR | 54222357 | 54222700 | 54222357 | ID=Msa0258130-mRNA-1:three_prime_utr;Parent=Msa0258130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
