Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258150 | KEH38903.1 | 91.949 | 236 | 13 | 1 | 1 | 236 | 1 | 230 | 7.74e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258150 | sp|Q1G3Q4|RITF1_ARATH | 38.571 | 140 | 75 | 5 | 6 | 145 | 8 | 136 | 2.45e-20 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258150 | A0A072VBY3 | 91.949 | 236 | 13 | 1 | 1 | 236 | 1 | 230 | 3.70e-145 | 414 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258150 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258150 | MtrunA17_Chr2g0320521 | 91.949 | 236 | 13 | 1 | 1 | 236 | 3 | 232 | 7.48e-149 | 414 |
| Msa0258150 | MtrunA17_Chr2g0320561 | 60.408 | 245 | 86 | 3 | 1 | 236 | 1 | 243 | 4.04e-91 | 268 |
| Msa0258150 | MtrunA17_Chr4g0020811 | 66.667 | 150 | 50 | 0 | 1 | 150 | 3 | 152 | 2.06e-67 | 205 |
| Msa0258150 | MtrunA17_Chr2g0308401 | 66.000 | 150 | 51 | 0 | 1 | 150 | 1 | 150 | 8.08e-67 | 203 |
| Msa0258150 | MtrunA17_Chr2g0320551 | 58.278 | 151 | 62 | 1 | 1 | 151 | 1 | 150 | 1.31e-58 | 182 |
| Msa0258150 | MtrunA17_Chr1g0179781 | 38.934 | 244 | 94 | 7 | 1 | 235 | 4 | 201 | 8.07e-47 | 154 |
| Msa0258150 | MtrunA17_Chr7g0265291 | 39.574 | 235 | 98 | 8 | 5 | 235 | 8 | 202 | 1.83e-42 | 143 |
| Msa0258150 | MtrunA17_Chr5g0411151 | 47.794 | 136 | 61 | 3 | 5 | 140 | 36 | 161 | 3.81e-40 | 138 |
| Msa0258150 | MtrunA17_Chr5g0395181 | 35.931 | 231 | 103 | 5 | 5 | 235 | 22 | 207 | 4.67e-40 | 137 |
| Msa0258150 | MtrunA17_Chr4g0040071 | 34.199 | 231 | 114 | 6 | 5 | 235 | 16 | 208 | 1.59e-37 | 130 |
| Msa0258150 | MtrunA17_Chr8g0366581 | 45.588 | 136 | 64 | 3 | 5 | 140 | 34 | 159 | 4.26e-36 | 127 |
| Msa0258150 | MtrunA17_Chr2g0297251 | 31.915 | 235 | 139 | 8 | 6 | 235 | 39 | 257 | 1.66e-27 | 105 |
| Msa0258150 | MtrunA17_Chr7g0230511 | 31.452 | 248 | 140 | 10 | 6 | 235 | 11 | 246 | 2.95e-27 | 104 |
| Msa0258150 | MtrunA17_Chr4g0065041 | 38.571 | 140 | 75 | 5 | 6 | 145 | 10 | 138 | 3.64e-20 | 86.3 |
| Msa0258150 | MtrunA17_Chr8g0392151 | 34.737 | 95 | 58 | 3 | 6 | 100 | 15 | 105 | 1.04e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258150 | AT1G43000.2 | 37.238 | 239 | 118 | 7 | 1 | 235 | 13 | 223 | 3.31e-46 | 153 |
| Msa0258150 | AT1G43000.1 | 37.238 | 239 | 118 | 7 | 1 | 235 | 6 | 216 | 3.51e-46 | 153 |
| Msa0258150 | AT1G21000.1 | 35.391 | 243 | 136 | 8 | 3 | 235 | 15 | 246 | 1.93e-40 | 139 |
| Msa0258150 | AT1G21000.2 | 35.391 | 243 | 136 | 8 | 3 | 235 | 12 | 243 | 2.14e-40 | 139 |
| Msa0258150 | AT1G76590.1 | 35.565 | 239 | 134 | 7 | 5 | 235 | 19 | 245 | 5.82e-39 | 135 |
| Msa0258150 | AT4G17900.1 | 49.635 | 137 | 58 | 4 | 5 | 140 | 35 | 161 | 6.36e-38 | 132 |
| Msa0258150 | AT1G32700.1 | 47.857 | 140 | 63 | 3 | 6 | 145 | 14 | 143 | 1.17e-37 | 131 |
| Msa0258150 | AT4G17900.2 | 49.635 | 137 | 58 | 4 | 5 | 140 | 21 | 147 | 1.92e-37 | 130 |
| Msa0258150 | AT2G27930.1 | 46.043 | 139 | 69 | 3 | 6 | 141 | 6 | 141 | 9.35e-35 | 123 |
| Msa0258150 | AT2G27930.4 | 46.043 | 139 | 69 | 3 | 6 | 141 | 6 | 141 | 9.35e-35 | 123 |
| Msa0258150 | AT2G27930.3 | 45.985 | 137 | 68 | 3 | 6 | 139 | 6 | 139 | 1.07e-33 | 119 |
| Msa0258150 | AT2G27930.2 | 45.985 | 137 | 68 | 3 | 6 | 139 | 6 | 139 | 1.07e-33 | 119 |
| Msa0258150 | AT1G32700.2 | 48.673 | 113 | 49 | 2 | 33 | 145 | 1 | 104 | 3.56e-30 | 110 |
| Msa0258150 | AT5G46710.3 | 34.483 | 232 | 114 | 8 | 6 | 235 | 14 | 209 | 2.43e-29 | 109 |
| Msa0258150 | AT5G46710.1 | 34.483 | 232 | 114 | 8 | 6 | 235 | 30 | 225 | 6.15e-29 | 108 |
| Msa0258150 | AT5G46710.2 | 43.704 | 135 | 65 | 4 | 6 | 139 | 30 | 154 | 1.29e-27 | 103 |
| Msa0258150 | AT1G31040.1 | 29.583 | 240 | 141 | 9 | 6 | 235 | 21 | 242 | 2.66e-23 | 94.7 |
| Msa0258150 | AT2G12646.3 | 38.194 | 144 | 78 | 5 | 2 | 145 | 1 | 133 | 1.23e-21 | 90.5 |
| Msa0258150 | AT2G12646.1 | 38.571 | 140 | 75 | 5 | 6 | 145 | 8 | 136 | 2.49e-21 | 89.7 |
| Msa0258150 | AT2G12646.2 | 38.571 | 140 | 75 | 5 | 6 | 145 | 8 | 136 | 2.49e-21 | 89.7 |
| Msa0258150 | AT3G60670.1 | 37.037 | 135 | 74 | 4 | 6 | 140 | 9 | 132 | 1.89e-20 | 87.0 |
| Msa0258150 | AT2G01818.1 | 29.060 | 234 | 139 | 8 | 6 | 236 | 13 | 222 | 3.35e-17 | 77.8 |
| Msa0258150 | AT2G27930.5 | 45.349 | 86 | 42 | 2 | 59 | 141 | 61 | 144 | 5.81e-17 | 76.6 |
| Msa0258150 | AT2G27930.6 | 45.349 | 86 | 42 | 2 | 59 | 141 | 61 | 144 | 5.81e-17 | 76.6 |
Find 35 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCTTTCTTCTTGAATT+TGG | 0.126179 | 2_2:+54321340 | None:intergenic |
| TTCTTAGTAGGTTGGGAATA+AGG | 0.275954 | 2_2:+54322011 | None:intergenic |
| TTTATGCAAGATCCACAAAA+TGG | 0.291003 | 2_2:+54322358 | None:intergenic |
| AATCGAAATTTACAAGCATT+TGG | 0.312437 | 2_2:-54322096 | Msa0258150:CDS |
| TACAAGCATTTGGATATTCT+AGG | 0.347196 | 2_2:-54322086 | Msa0258150:CDS |
| AAGAAGACGATAGGTATAAT+TGG | 0.364201 | 2_2:-54321993 | Msa0258150:CDS |
| AGTTGCTAATCACATAGGTT+TGG | 0.394909 | 2_2:+54322060 | None:intergenic |
| ATACCTATCGTCTTCTTAGT+AGG | 0.403093 | 2_2:+54321999 | None:intergenic |
| TGCAAAGGAGACAGAAGAAA+TGG | 0.410636 | 2_2:-54321548 | Msa0258150:CDS |
| AGAAGAAATGGAAAGATTGT+TGG | 0.417250 | 2_2:-54321536 | Msa0258150:CDS |
| GCCAGAGAGCAAAAGTAATA+AGG | 0.422528 | 2_2:+54321921 | None:intergenic |
| TATCGTCTTCTTAGTAGGTT+GGG | 0.425885 | 2_2:+54322004 | None:intergenic |
| CTTCTGTCTCCTTTGCACTT+AGG | 0.432332 | 2_2:+54321554 | None:intergenic |
| AAAGCCAAATTCAAGAAGAA+AGG | 0.446839 | 2_2:-54321344 | Msa0258150:CDS |
| CTATCGTCTTCTTAGTAGGT+TGG | 0.480968 | 2_2:+54322003 | None:intergenic |
| ATATGTCAAAGGAATCTTGT+AGG | 0.494888 | 2_2:-54321945 | Msa0258150:CDS |
| AAGCCAAATTCAAGAAGAAA+GGG | 0.497702 | 2_2:-54321343 | Msa0258150:CDS |
| TTTGAATGCATAAAGAAGGA+TGG | 0.531033 | 2_2:-54321586 | Msa0258150:CDS |
| TGTAAAGTTGCTAATCACAT+AGG | 0.533475 | 2_2:+54322055 | None:intergenic |
| AGAAATGGAAAGATTGTTGG+AGG | 0.534953 | 2_2:-54321533 | Msa0258150:CDS |
| CAAGTTTGAATGCATAAAGA+AGG | 0.541080 | 2_2:-54321590 | Msa0258150:intron |
| AACTTCACATGATGTGAAGA+AGG | 0.546693 | 2_2:+54322438 | None:intergenic |
| AGGATATGATGTCCATGCCC+TGG | 0.549335 | 2_2:-54322486 | None:intergenic |
| TTGAATGCATAAAGAAGGAT+GGG | 0.549402 | 2_2:-54321585 | Msa0258150:CDS |
| AAGAAAGGGAATACCTCGTA+GGG | 0.554824 | 2_2:-54321329 | Msa0258150:CDS |
| ATTGTTGGAGGAATCAATCA+AGG | 0.555066 | 2_2:-54321521 | Msa0258150:CDS |
| AAACGAAAAGTAAATGAAGC+GGG | 0.558672 | 2_2:-54321457 | Msa0258150:CDS |
| CAGTTGTATTCATAAACAAG+AGG | 0.585618 | 2_2:-54322034 | Msa0258150:CDS |
| AAACAATGAAGAAAACGAAG+AGG | 0.596883 | 2_2:-54321431 | Msa0258150:CDS |
| CAACCTACTAAGAAGACGAT+AGG | 0.603325 | 2_2:-54322002 | Msa0258150:CDS |
| AAAACGAAAAGTAAATGAAG+CGG | 0.609354 | 2_2:-54321458 | Msa0258150:CDS |
| GAAGAAAGGGAATACCTCGT+AGG | 0.613671 | 2_2:-54321330 | Msa0258150:CDS |
| ATCTTTGTAAGATATGTCAA+AGG | 0.646257 | 2_2:-54321956 | Msa0258150:CDS |
| TGAATGCATAAAGAAGGATG+GGG | 0.648201 | 2_2:-54321584 | Msa0258150:CDS |
| GAATGCATAAAGAAGGATGG+GGG | 0.668084 | 2_2:-54321583 | Msa0258150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATTAAAGAAAAG+TGG | + | chr2_2:54321565-54321584 | None:intergenic | 10.0% |
| !! | ACAAAATAAATTAAAAAAAG+AGG | + | chr2_2:54321967-54321986 | None:intergenic | 10.0% |
| !! | AAAAATTAATTAAAGAAAAG+TGG | + | chr2_2:54321565-54321584 | None:intergenic | 10.0% |
| !! | ACAAAATAAATTAAAAAAAG+AGG | + | chr2_2:54321967-54321986 | None:intergenic | 10.0% |
| !!! | TTGTATAATTTTTTTGACTT+TGG | - | chr2_2:54321602-54321621 | Msa0258150:intron | 15.0% |
| !!! | TGTATAATTTTTTTGACTTT+GGG | - | chr2_2:54321603-54321622 | Msa0258150:intron | 15.0% |
| !!! | AATCGCTTAATTTTTTTTAT+TGG | - | chr2_2:54322072-54322091 | Msa0258150:CDS | 15.0% |
| !!! | TTGTATAATTTTTTTGACTT+TGG | - | chr2_2:54321602-54321621 | Msa0258150:intron | 15.0% |
| !!! | TGTATAATTTTTTTGACTTT+GGG | - | chr2_2:54321603-54321622 | Msa0258150:intron | 15.0% |
| !!! | AATCGCTTAATTTTTTTTAT+TGG | - | chr2_2:54322072-54322091 | Msa0258150:CDS | 15.0% |
| !! | AAAAAGAGGATCTATAAAAA+AGG | + | chr2_2:54321953-54321972 | None:intergenic | 20.0% |
| !!! | TTTTTTATTGGTGTAAAGAA+TGG | - | chr2_2:54322084-54322103 | Msa0258150:CDS | 20.0% |
| !!! | TTTTTATTGGTGTAAAGAAT+GGG | - | chr2_2:54322085-54322104 | Msa0258150:CDS | 20.0% |
| !! | AAAAAGAGGATCTATAAAAA+AGG | + | chr2_2:54321953-54321972 | None:intergenic | 20.0% |
| !!! | TTTTTTATTGGTGTAAAGAA+TGG | - | chr2_2:54322084-54322103 | Msa0258150:CDS | 20.0% |
| !!! | TTTTTATTGGTGTAAAGAAT+GGG | - | chr2_2:54322085-54322104 | Msa0258150:CDS | 20.0% |
| ! | TATACTTGCAATTACAAATC+AGG | - | chr2_2:54321643-54321662 | Msa0258150:intron | 25.0% |
| ! | AATCGAAATTTACAAGCATT+TGG | - | chr2_2:54321700-54321719 | Msa0258150:intron | 25.0% |
| ! | ATCTTTGTAAGATATGTCAA+AGG | - | chr2_2:54321840-54321859 | Msa0258150:intron | 25.0% |
| ! | ATAAAAAAGGAGACATGATA+AGG | + | chr2_2:54321940-54321959 | None:intergenic | 25.0% |
| !!! | GATTTTTTGGCTTTTTGTTT+TGG | + | chr2_2:54322303-54322322 | None:intergenic | 25.0% |
| ! | AAAACGAAAAGTAAATGAAG+CGG | - | chr2_2:54322338-54322357 | Msa0258150:CDS | 25.0% |
| ! | TATACTTGCAATTACAAATC+AGG | - | chr2_2:54321643-54321662 | Msa0258150:intron | 25.0% |
| ! | AATCGAAATTTACAAGCATT+TGG | - | chr2_2:54321700-54321719 | Msa0258150:intron | 25.0% |
| ! | ATCTTTGTAAGATATGTCAA+AGG | - | chr2_2:54321840-54321859 | Msa0258150:intron | 25.0% |
| ! | ATAAAAAAGGAGACATGATA+AGG | + | chr2_2:54321940-54321959 | None:intergenic | 25.0% |
| !!! | GATTTTTTGGCTTTTTGTTT+TGG | + | chr2_2:54322303-54322322 | None:intergenic | 25.0% |
| ! | AAAACGAAAAGTAAATGAAG+CGG | - | chr2_2:54322338-54322357 | Msa0258150:CDS | 25.0% |
| ! | CAAAAATTTGCTTGCAATCA+CGG | - | chr2_2:54321335-54321354 | Msa0258150:CDS | 30.0% |
| TTTATGCAAGATCCACAAAA+TGG | + | chr2_2:54321441-54321460 | None:intergenic | 30.0% | |
| TACAAGCATTTGGATATTCT+AGG | - | chr2_2:54321710-54321729 | Msa0258150:intron | 30.0% | |
| TGTAAAGTTGCTAATCACAT+AGG | + | chr2_2:54321744-54321763 | None:intergenic | 30.0% | |
| CAGTTGTATTCATAAACAAG+AGG | - | chr2_2:54321762-54321781 | Msa0258150:intron | 30.0% | |
| AAGAAGACGATAGGTATAAT+TGG | - | chr2_2:54321803-54321822 | Msa0258150:intron | 30.0% | |
| ATATGTCAAAGGAATCTTGT+AGG | - | chr2_2:54321851-54321870 | Msa0258150:intron | 30.0% | |
| CAAGTTTGAATGCATAAAGA+AGG | - | chr2_2:54322206-54322225 | Msa0258150:intron | 30.0% | |
| TTTGAATGCATAAAGAAGGA+TGG | - | chr2_2:54322210-54322229 | Msa0258150:intron | 30.0% | |
| TTGAATGCATAAAGAAGGAT+GGG | - | chr2_2:54322211-54322230 | Msa0258150:intron | 30.0% | |
| AGAAGAAATGGAAAGATTGT+TGG | - | chr2_2:54322260-54322279 | Msa0258150:intron | 30.0% | |
| ! | ATTTTGTTCACGCGATTTTT+TGG | + | chr2_2:54322316-54322335 | None:intergenic | 30.0% |
| AAACGAAAAGTAAATGAAGC+GGG | - | chr2_2:54322339-54322358 | Msa0258150:CDS | 30.0% | |
| AAACAATGAAGAAAACGAAG+AGG | - | chr2_2:54322365-54322384 | Msa0258150:CDS | 30.0% | |
| !!! | CTTGAATTTGGCTTTTTGAT+AGG | + | chr2_2:54322447-54322466 | None:intergenic | 30.0% |
| AAAGCCAAATTCAAGAAGAA+AGG | - | chr2_2:54322452-54322471 | Msa0258150:CDS | 30.0% | |
| AAGCCAAATTCAAGAAGAAA+GGG | - | chr2_2:54322453-54322472 | Msa0258150:CDS | 30.0% | |
| ATTCCCTTTCTTCTTGAATT+TGG | + | chr2_2:54322459-54322478 | None:intergenic | 30.0% | |
| ! | CAAAAATTTGCTTGCAATCA+CGG | - | chr2_2:54321335-54321354 | Msa0258150:CDS | 30.0% |
| TTTATGCAAGATCCACAAAA+TGG | + | chr2_2:54321441-54321460 | None:intergenic | 30.0% | |
| TACAAGCATTTGGATATTCT+AGG | - | chr2_2:54321710-54321729 | Msa0258150:intron | 30.0% | |
| TGTAAAGTTGCTAATCACAT+AGG | + | chr2_2:54321744-54321763 | None:intergenic | 30.0% | |
| CAGTTGTATTCATAAACAAG+AGG | - | chr2_2:54321762-54321781 | Msa0258150:intron | 30.0% | |
| AAGAAGACGATAGGTATAAT+TGG | - | chr2_2:54321803-54321822 | Msa0258150:intron | 30.0% | |
| ATATGTCAAAGGAATCTTGT+AGG | - | chr2_2:54321851-54321870 | Msa0258150:intron | 30.0% | |
| CAAGTTTGAATGCATAAAGA+AGG | - | chr2_2:54322206-54322225 | Msa0258150:intron | 30.0% | |
| TTTGAATGCATAAAGAAGGA+TGG | - | chr2_2:54322210-54322229 | Msa0258150:intron | 30.0% | |
| TTGAATGCATAAAGAAGGAT+GGG | - | chr2_2:54322211-54322230 | Msa0258150:intron | 30.0% | |
| AGAAGAAATGGAAAGATTGT+TGG | - | chr2_2:54322260-54322279 | Msa0258150:intron | 30.0% | |
| ! | ATTTTGTTCACGCGATTTTT+TGG | + | chr2_2:54322316-54322335 | None:intergenic | 30.0% |
| AAACGAAAAGTAAATGAAGC+GGG | - | chr2_2:54322339-54322358 | Msa0258150:CDS | 30.0% | |
| AAACAATGAAGAAAACGAAG+AGG | - | chr2_2:54322365-54322384 | Msa0258150:CDS | 30.0% | |
| !!! | CTTGAATTTGGCTTTTTGAT+AGG | + | chr2_2:54322447-54322466 | None:intergenic | 30.0% |
| AAAGCCAAATTCAAGAAGAA+AGG | - | chr2_2:54322452-54322471 | Msa0258150:CDS | 30.0% | |
| AAGCCAAATTCAAGAAGAAA+GGG | - | chr2_2:54322453-54322472 | Msa0258150:CDS | 30.0% | |
| ATTCCCTTTCTTCTTGAATT+TGG | + | chr2_2:54322459-54322478 | None:intergenic | 30.0% | |
| AACTTCACATGATGTGAAGA+AGG | + | chr2_2:54321361-54321380 | None:intergenic | 35.0% | |
| ! | TGCAATGACAATCCATTTTG+TGG | - | chr2_2:54321426-54321445 | Msa0258150:CDS | 35.0% |
| TCCAAGTGAGTGTTCTTTAA+AGG | - | chr2_2:54321487-54321506 | Msa0258150:CDS | 35.0% | |
| CCAAGTGAGTGTTCTTTAAA+GGG | - | chr2_2:54321488-54321507 | Msa0258150:CDS | 35.0% | |
| TTGCAATTACAAATCAGGTG+AGG | - | chr2_2:54321648-54321667 | Msa0258150:intron | 35.0% | |
| AGTTGCTAATCACATAGGTT+TGG | + | chr2_2:54321739-54321758 | None:intergenic | 35.0% | |
| ! | TTCTTAGTAGGTTGGGAATA+AGG | + | chr2_2:54321788-54321807 | None:intergenic | 35.0% |
| TATCGTCTTCTTAGTAGGTT+GGG | + | chr2_2:54321795-54321814 | None:intergenic | 35.0% | |
| ATACCTATCGTCTTCTTAGT+AGG | + | chr2_2:54321800-54321819 | None:intergenic | 35.0% | |
| !! | ACCTTATTACTTTTGCTCTC+TGG | - | chr2_2:54321874-54321893 | Msa0258150:intron | 35.0% |
| TGAATGCATAAAGAAGGATG+GGG | - | chr2_2:54322212-54322231 | Msa0258150:intron | 35.0% | |
| AGAAATGGAAAGATTGTTGG+AGG | - | chr2_2:54322263-54322282 | Msa0258150:intron | 35.0% | |
| ATTGTTGGAGGAATCAATCA+AGG | - | chr2_2:54322275-54322294 | Msa0258150:intron | 35.0% | |
| ACGAAGAGGATGAAGAAAAA+AGG | - | chr2_2:54322379-54322398 | Msa0258150:CDS | 35.0% | |
| CGAAGAGGATGAAGAAAAAA+GGG | - | chr2_2:54322380-54322399 | Msa0258150:CDS | 35.0% | |
| AACTTCACATGATGTGAAGA+AGG | + | chr2_2:54321361-54321380 | None:intergenic | 35.0% | |
| ! | TGCAATGACAATCCATTTTG+TGG | - | chr2_2:54321426-54321445 | Msa0258150:CDS | 35.0% |
| TCCAAGTGAGTGTTCTTTAA+AGG | - | chr2_2:54321487-54321506 | Msa0258150:CDS | 35.0% | |
| CCAAGTGAGTGTTCTTTAAA+GGG | - | chr2_2:54321488-54321507 | Msa0258150:CDS | 35.0% | |
| TTGCAATTACAAATCAGGTG+AGG | - | chr2_2:54321648-54321667 | Msa0258150:intron | 35.0% | |
| AGTTGCTAATCACATAGGTT+TGG | + | chr2_2:54321739-54321758 | None:intergenic | 35.0% | |
| ! | TTCTTAGTAGGTTGGGAATA+AGG | + | chr2_2:54321788-54321807 | None:intergenic | 35.0% |
| TATCGTCTTCTTAGTAGGTT+GGG | + | chr2_2:54321795-54321814 | None:intergenic | 35.0% | |
| ATACCTATCGTCTTCTTAGT+AGG | + | chr2_2:54321800-54321819 | None:intergenic | 35.0% | |
| !! | ACCTTATTACTTTTGCTCTC+TGG | - | chr2_2:54321874-54321893 | Msa0258150:intron | 35.0% |
| TGAATGCATAAAGAAGGATG+GGG | - | chr2_2:54322212-54322231 | Msa0258150:intron | 35.0% | |
| AGAAATGGAAAGATTGTTGG+AGG | - | chr2_2:54322263-54322282 | Msa0258150:intron | 35.0% | |
| ATTGTTGGAGGAATCAATCA+AGG | - | chr2_2:54322275-54322294 | Msa0258150:intron | 35.0% | |
| ACGAAGAGGATGAAGAAAAA+AGG | - | chr2_2:54322379-54322398 | Msa0258150:CDS | 35.0% | |
| CGAAGAGGATGAAGAAAAAA+GGG | - | chr2_2:54322380-54322399 | Msa0258150:CDS | 35.0% | |
| !! | GCAAGCAAATTTTTGAGCCA+GGG | + | chr2_2:54321330-54321349 | None:intergenic | 40.0% |
| !! | TGCAAGCAAATTTTTGAGCC+AGG | + | chr2_2:54321331-54321350 | None:intergenic | 40.0% |
| ! | CCCTTTAAAGAACACTCACT+TGG | + | chr2_2:54321491-54321510 | None:intergenic | 40.0% |
| CTATCGTCTTCTTAGTAGGT+TGG | + | chr2_2:54321796-54321815 | None:intergenic | 40.0% | |
| CAACCTACTAAGAAGACGAT+AGG | - | chr2_2:54321794-54321813 | Msa0258150:intron | 40.0% | |
| GCCAGAGAGCAAAAGTAATA+AGG | + | chr2_2:54321878-54321897 | None:intergenic | 40.0% | |
| GAATGCATAAAGAAGGATGG+GGG | - | chr2_2:54322213-54322232 | Msa0258150:intron | 40.0% | |
| TGCAAAGGAGACAGAAGAAA+TGG | - | chr2_2:54322248-54322267 | Msa0258150:intron | 40.0% | |
| AGAGGATGAAGAAAAAAGGG+AGG | - | chr2_2:54322383-54322402 | Msa0258150:CDS | 40.0% | |
| AAGAAAGGGAATACCTCGTA+GGG | - | chr2_2:54322467-54322486 | Msa0258150:CDS | 40.0% | |
| !! | GCAAGCAAATTTTTGAGCCA+GGG | + | chr2_2:54321330-54321349 | None:intergenic | 40.0% |
| !! | TGCAAGCAAATTTTTGAGCC+AGG | + | chr2_2:54321331-54321350 | None:intergenic | 40.0% |
| ! | CCCTTTAAAGAACACTCACT+TGG | + | chr2_2:54321491-54321510 | None:intergenic | 40.0% |
| CTATCGTCTTCTTAGTAGGT+TGG | + | chr2_2:54321796-54321815 | None:intergenic | 40.0% | |
| CAACCTACTAAGAAGACGAT+AGG | - | chr2_2:54321794-54321813 | Msa0258150:intron | 40.0% | |
| GCCAGAGAGCAAAAGTAATA+AGG | + | chr2_2:54321878-54321897 | None:intergenic | 40.0% | |
| GAATGCATAAAGAAGGATGG+GGG | - | chr2_2:54322213-54322232 | Msa0258150:intron | 40.0% | |
| TGCAAAGGAGACAGAAGAAA+TGG | - | chr2_2:54322248-54322267 | Msa0258150:intron | 40.0% | |
| AGAGGATGAAGAAAAAAGGG+AGG | - | chr2_2:54322383-54322402 | Msa0258150:CDS | 40.0% | |
| AAGAAAGGGAATACCTCGTA+GGG | - | chr2_2:54322467-54322486 | Msa0258150:CDS | 40.0% | |
| !! | CAAATTTTTGAGCCAGGGCA+TGG | + | chr2_2:54321325-54321344 | None:intergenic | 45.0% |
| !! | GGGCTTTTTCCTAAGTGCAA+AGG | - | chr2_2:54322233-54322252 | Msa0258150:intron | 45.0% |
| CTTCTGTCTCCTTTGCACTT+AGG | + | chr2_2:54322245-54322264 | None:intergenic | 45.0% | |
| GAAGAAAGGGAATACCTCGT+AGG | - | chr2_2:54322466-54322485 | Msa0258150:CDS | 45.0% | |
| !! | TAAAAAAAGGGTGCCCTACG+AGG | + | chr2_2:54322483-54322502 | None:intergenic | 45.0% |
| !! | CAAATTTTTGAGCCAGGGCA+TGG | + | chr2_2:54321325-54321344 | None:intergenic | 45.0% |
| !! | GGGCTTTTTCCTAAGTGCAA+AGG | - | chr2_2:54322233-54322252 | Msa0258150:intron | 45.0% |
| CTTCTGTCTCCTTTGCACTT+AGG | + | chr2_2:54322245-54322264 | None:intergenic | 45.0% | |
| GAAGAAAGGGAATACCTCGT+AGG | - | chr2_2:54322466-54322485 | Msa0258150:CDS | 45.0% | |
| !! | TAAAAAAAGGGTGCCCTACG+AGG | + | chr2_2:54322483-54322502 | None:intergenic | 45.0% |
| !!! | TTATGTTTATTAATTTTTAT+TGG | - | chr2_2:54322043-54322062 | Msa0258150:CDS | 5.0% |
| !!! | TTATGTTTATTAATTTTTAT+TGG | - | chr2_2:54322043-54322062 | Msa0258150:CDS | 5.0% |
| ! | CTTTTGCTCTCTGGCATGCA+AGG | - | chr2_2:54321883-54321902 | Msa0258150:intron | 50.0% |
| ! | CTTTTGCTCTCTGGCATGCA+AGG | - | chr2_2:54321883-54321902 | Msa0258150:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54321315 | 54322503 | 54321315 | ID=Msa0258150;Name=Msa0258150 |
| chr2_2 | mRNA | 54321315 | 54322503 | 54321315 | ID=Msa0258150-mRNA-1;Parent=Msa0258150;Name=Msa0258150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|236 |
| chr2_2 | exon | 54322327 | 54322503 | 54322327 | ID=Msa0258150-mRNA-1:exon:16316;Parent=Msa0258150-mRNA-1 |
| chr2_2 | exon | 54321914 | 54322153 | 54321914 | ID=Msa0258150-mRNA-1:exon:16315;Parent=Msa0258150-mRNA-1 |
| chr2_2 | exon | 54321315 | 54321608 | 54321315 | ID=Msa0258150-mRNA-1:exon:16314;Parent=Msa0258150-mRNA-1 |
| chr2_2 | CDS | 54322327 | 54322503 | 54322327 | ID=Msa0258150-mRNA-1:cds;Parent=Msa0258150-mRNA-1 |
| chr2_2 | CDS | 54321914 | 54322153 | 54321914 | ID=Msa0258150-mRNA-1:cds;Parent=Msa0258150-mRNA-1 |
| chr2_2 | CDS | 54321315 | 54321608 | 54321315 | ID=Msa0258150-mRNA-1:cds;Parent=Msa0258150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
