Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258170 | RHN75377.1 | 64.609 | 243 | 74 | 2 | 6 | 248 | 2 | 232 | 3.25e-102 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258170 | sp|Q1G3Q4|RITF1_ARATH | 37.681 | 138 | 75 | 5 | 12 | 149 | 8 | 134 | 1.48e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258170 | A0A396JJY5 | 64.609 | 243 | 74 | 2 | 6 | 248 | 2 | 232 | 1.55e-102 | 306 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258170 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258170 | MtrunA17_Chr2g0320521 | 64.609 | 243 | 74 | 2 | 6 | 248 | 2 | 232 | 2.99e-106 | 306 |
| Msa0258170 | MtrunA17_Chr2g0320561 | 60.643 | 249 | 85 | 2 | 7 | 248 | 1 | 243 | 1.45e-98 | 287 |
| Msa0258170 | MtrunA17_Chr4g0020811 | 74.834 | 151 | 38 | 0 | 6 | 156 | 2 | 152 | 1.45e-81 | 241 |
| Msa0258170 | MtrunA17_Chr2g0308401 | 74.000 | 150 | 39 | 0 | 7 | 156 | 1 | 150 | 4.87e-80 | 237 |
| Msa0258170 | MtrunA17_Chr2g0320551 | 63.816 | 152 | 55 | 0 | 7 | 158 | 1 | 152 | 4.32e-68 | 207 |
| Msa0258170 | MtrunA17_Chr1g0179781 | 40.650 | 246 | 96 | 9 | 6 | 247 | 2 | 201 | 9.83e-49 | 159 |
| Msa0258170 | MtrunA17_Chr7g0265291 | 41.152 | 243 | 97 | 8 | 7 | 247 | 4 | 202 | 3.72e-45 | 150 |
| Msa0258170 | MtrunA17_Chr5g0395181 | 37.131 | 237 | 98 | 6 | 11 | 247 | 22 | 207 | 1.01e-41 | 141 |
| Msa0258170 | MtrunA17_Chr4g0040071 | 37.238 | 239 | 98 | 7 | 11 | 245 | 16 | 206 | 1.11e-41 | 141 |
| Msa0258170 | MtrunA17_Chr5g0411151 | 37.143 | 245 | 96 | 8 | 11 | 247 | 36 | 230 | 2.93e-41 | 141 |
| Msa0258170 | MtrunA17_Chr8g0366581 | 47.445 | 137 | 62 | 3 | 11 | 147 | 34 | 160 | 1.20e-37 | 132 |
| Msa0258170 | MtrunA17_Chr7g0230511 | 40.136 | 147 | 75 | 6 | 9 | 154 | 7 | 141 | 9.53e-26 | 101 |
| Msa0258170 | MtrunA17_Chr2g0297251 | 30.315 | 254 | 124 | 9 | 12 | 247 | 39 | 257 | 4.62e-23 | 94.4 |
| Msa0258170 | MtrunA17_Chr4g0065041 | 29.119 | 261 | 141 | 9 | 12 | 247 | 10 | 251 | 3.99e-22 | 91.7 |
| Msa0258170 | MtrunA17_Chr8g0392151 | 27.174 | 184 | 115 | 6 | 12 | 182 | 15 | 192 | 2.64e-15 | 73.2 |
| Msa0258170 | MtrunA17_Chr4g0052451 | 38.372 | 86 | 51 | 1 | 63 | 148 | 10 | 93 | 1.13e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258170 | AT1G43000.2 | 39.344 | 244 | 114 | 10 | 6 | 247 | 12 | 223 | 2.06e-45 | 152 |
| Msa0258170 | AT1G43000.1 | 39.344 | 244 | 114 | 10 | 6 | 247 | 5 | 216 | 2.16e-45 | 151 |
| Msa0258170 | AT1G21000.2 | 38.400 | 250 | 131 | 11 | 6 | 247 | 9 | 243 | 2.61e-43 | 147 |
| Msa0258170 | AT1G21000.1 | 38.400 | 250 | 131 | 11 | 6 | 247 | 12 | 246 | 2.69e-43 | 147 |
| Msa0258170 | AT4G17900.1 | 50.000 | 138 | 58 | 4 | 11 | 147 | 35 | 162 | 3.87e-40 | 138 |
| Msa0258170 | AT1G76590.1 | 36.515 | 241 | 135 | 10 | 11 | 247 | 19 | 245 | 9.82e-40 | 138 |
| Msa0258170 | AT4G17900.2 | 50.000 | 138 | 58 | 4 | 11 | 147 | 21 | 148 | 1.73e-39 | 136 |
| Msa0258170 | AT1G32700.1 | 48.571 | 140 | 62 | 3 | 12 | 151 | 14 | 143 | 4.72e-38 | 132 |
| Msa0258170 | AT2G27930.3 | 45.455 | 154 | 74 | 4 | 12 | 162 | 6 | 152 | 8.61e-36 | 125 |
| Msa0258170 | AT2G27930.2 | 45.455 | 154 | 74 | 4 | 12 | 162 | 6 | 152 | 8.61e-36 | 125 |
| Msa0258170 | AT2G27930.1 | 48.175 | 137 | 65 | 3 | 12 | 145 | 6 | 139 | 1.48e-35 | 125 |
| Msa0258170 | AT2G27930.4 | 48.175 | 137 | 65 | 3 | 12 | 145 | 6 | 139 | 1.48e-35 | 125 |
| Msa0258170 | AT1G32700.2 | 50.000 | 112 | 47 | 2 | 40 | 151 | 2 | 104 | 3.17e-29 | 108 |
| Msa0258170 | AT5G46710.1 | 31.092 | 238 | 120 | 8 | 12 | 247 | 30 | 225 | 1.98e-26 | 102 |
| Msa0258170 | AT5G46710.3 | 31.092 | 238 | 120 | 8 | 12 | 247 | 14 | 209 | 2.04e-26 | 102 |
| Msa0258170 | AT5G46710.2 | 39.259 | 135 | 71 | 4 | 12 | 145 | 30 | 154 | 2.55e-25 | 98.2 |
| Msa0258170 | AT1G31040.1 | 31.174 | 247 | 134 | 9 | 12 | 247 | 21 | 242 | 2.74e-25 | 100 |
| Msa0258170 | AT2G12646.3 | 37.681 | 138 | 75 | 5 | 12 | 149 | 5 | 131 | 1.40e-20 | 87.8 |
| Msa0258170 | AT2G12646.1 | 37.681 | 138 | 75 | 5 | 12 | 149 | 8 | 134 | 1.50e-20 | 87.8 |
| Msa0258170 | AT2G12646.2 | 37.681 | 138 | 75 | 5 | 12 | 149 | 8 | 134 | 1.50e-20 | 87.8 |
| Msa0258170 | AT3G60670.1 | 37.681 | 138 | 75 | 4 | 12 | 149 | 9 | 135 | 1.83e-19 | 84.7 |
| Msa0258170 | AT2G27930.5 | 50.000 | 84 | 37 | 2 | 65 | 145 | 61 | 142 | 7.70e-17 | 76.6 |
| Msa0258170 | AT2G27930.6 | 50.000 | 84 | 37 | 2 | 65 | 145 | 61 | 142 | 7.70e-17 | 76.6 |
| Msa0258170 | AT2G01818.1 | 34.641 | 153 | 91 | 6 | 12 | 160 | 13 | 160 | 3.30e-15 | 72.8 |
Find 33 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCAATCTTCATTCTCTT+AGG | 0.283981 | 2_2:+54355576 | None:intergenic |
| CTTGAATTTGAACGATTAAC+AGG | 0.305058 | 2_2:+54354509 | None:intergenic |
| AAGTGGAATCTACGAGATTT+CGG | 0.409787 | 2_2:+54355514 | None:intergenic |
| TATTGTTTCTTAGGATATGA+TGG | 0.415503 | 2_2:-54356074 | Msa0258170:intron |
| ATGGATTGCCATTGCAATCA+AGG | 0.427353 | 2_2:+54355954 | None:intergenic |
| TACAAGCATCTTGACATCCT+TGG | 0.432167 | 2_2:-54355663 | Msa0258170:CDS |
| CAATCTTCATTCTCTTAGGT+TGG | 0.437011 | 2_2:+54355580 | None:intergenic |
| TGTCAGCAACTTCTCGAGCC+AGG | 0.456881 | 2_2:+54356045 | None:intergenic |
| CGTTCAAATTCAAGAAGAAA+AGG | 0.468206 | 2_2:-54354500 | Msa0258170:CDS |
| GGAGGAGAAAGAGAAGAAGA+CGG | 0.474743 | 2_2:-54354551 | Msa0258170:CDS |
| AAGAAAAGGAATACCTCATC+GGG | 0.477547 | 2_2:-54354486 | Msa0258170:CDS |
| AGGATATGATGGTGGTGCCC+TGG | 0.480086 | 2_2:-54356063 | Msa0258170:CDS |
| GGTATTAACACCAAAAGAAA+AGG | 0.486429 | 2_2:-54354675 | Msa0258170:CDS |
| TTTGCATATATAAAAGAGAA+TGG | 0.499337 | 2_2:-54354761 | Msa0258170:CDS |
| GAGGACGAGGATGATGAAGA+AGG | 0.511025 | 2_2:-54354575 | Msa0258170:CDS |
| CAACCTAAGAGAATGAAGAT+TGG | 0.511036 | 2_2:-54355579 | Msa0258170:CDS |
| TGCCAAAGAGCAAAAGTAAG+TGG | 0.517393 | 2_2:+54355497 | None:intergenic |
| AGAAAATGAAGAGAATGTAG+AGG | 0.531800 | 2_2:-54354594 | Msa0258170:CDS |
| GAGGATGATGAAGAAGGAGG+AGG | 0.533469 | 2_2:-54354569 | Msa0258170:CDS |
| TGAAGAGAATGTAGAGGACG+AGG | 0.536207 | 2_2:-54354588 | Msa0258170:CDS |
| ATTACTAGAGAAATCGATCA+AGG | 0.546263 | 2_2:-54354696 | Msa0258170:CDS |
| CAACACTGACTTGGATCACT+CGG | 0.554708 | 2_2:+54355894 | None:intergenic |
| GACGAGGATGATGAAGAAGG+AGG | 0.563743 | 2_2:-54354572 | Msa0258170:CDS |
| GTCAGCAACTTCTCGAGCCA+GGG | 0.568625 | 2_2:+54356046 | None:intergenic |
| TTTGACAATGACAATTGGAA+CGG | 0.571111 | 2_2:-54356172 | None:intergenic |
| TCCATTGTGTGGATCTTGCA+CGG | 0.580157 | 2_2:-54355936 | Msa0258170:CDS |
| TCACATAAGTTTGAACTCCA+AGG | 0.580665 | 2_2:+54355646 | None:intergenic |
| GAAGAAAAGGAATACCTCAT+CGG | 0.584504 | 2_2:-54354487 | Msa0258170:CDS |
| GCATATATAAAAGAGAATGG+AGG | 0.604209 | 2_2:-54354758 | Msa0258170:CDS |
| TGCAATGGCAATCCATTGTG+TGG | 0.634353 | 2_2:-54355947 | Msa0258170:CDS |
| TGTTTCTTAGGATATGATGG+TGG | 0.652828 | 2_2:-54356071 | Msa0258170:intron |
| CACTGACTTGGATCACTCGG+TGG | 0.654344 | 2_2:+54355897 | None:intergenic |
| TCCGTGCAAGATCCACACAA+TGG | 0.691156 | 2_2:+54355935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAATAAATAAT+TGG | - | chr2_2:54355438-54355457 | Msa0258170:intron | 0.0% |
| !! | AAATAAATAAATAAATAATT+GGG | - | chr2_2:54355439-54355458 | Msa0258170:intron | 0.0% |
| !! | AAAATAAATAAATAAATAAT+TGG | - | chr2_2:54355438-54355457 | Msa0258170:intron | 0.0% |
| !! | AAATAAATAAATAAATAATT+GGG | - | chr2_2:54355439-54355458 | Msa0258170:intron | 0.0% |
| !! | AAAAATAAAATGAATAGAAA+CGG | + | chr2_2:54354829-54354848 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTTTTTGAATT+TGG | - | chr2_2:54354866-54354885 | Msa0258170:intron | 10.0% |
| !! | AAAAATAAAATGAATAGAAA+CGG | + | chr2_2:54354829-54354848 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTTTTTGAATT+TGG | - | chr2_2:54354866-54354885 | Msa0258170:intron | 10.0% |
| !! | AAAATAAAATGAATAGAAAC+GGG | + | chr2_2:54354828-54354847 | None:intergenic | 15.0% |
| !!! | TGATATTTAAATGAGTATTT+TGG | - | chr2_2:54355410-54355429 | Msa0258170:intron | 15.0% |
| !!! | ACTTTTTTTGTTTTTGTTTT+TGG | + | chr2_2:54355648-54355667 | None:intergenic | 15.0% |
| !!! | TGTTTGTTACAAAATAAAAA+AGG | + | chr2_2:54355681-54355700 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTTGAAAATAA+TGG | - | chr2_2:54355748-54355767 | Msa0258170:intron | 15.0% |
| !! | AAAATAAAATGAATAGAAAC+GGG | + | chr2_2:54354828-54354847 | None:intergenic | 15.0% |
| !!! | TGATATTTAAATGAGTATTT+TGG | - | chr2_2:54355410-54355429 | Msa0258170:intron | 15.0% |
| !!! | ACTTTTTTTGTTTTTGTTTT+TGG | + | chr2_2:54355648-54355667 | None:intergenic | 15.0% |
| !!! | TGTTTGTTACAAAATAAAAA+AGG | + | chr2_2:54355681-54355700 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTTGAAAATAA+TGG | - | chr2_2:54355748-54355767 | Msa0258170:intron | 15.0% |
| !! | CTTGAATTATAAATCAGATA+AGG | - | chr2_2:54354912-54354931 | Msa0258170:intron | 20.0% |
| !!! | ACTTAATTTAAAACAGTGTT+AGG | - | chr2_2:54355346-54355365 | Msa0258170:intron | 20.0% |
| !! | TTTGCATATATAAAAGAGAA+TGG | - | chr2_2:54355876-54355895 | Msa0258170:intron | 20.0% |
| !! | CTTGAATTATAAATCAGATA+AGG | - | chr2_2:54354912-54354931 | Msa0258170:intron | 20.0% |
| !!! | ACTTAATTTAAAACAGTGTT+AGG | - | chr2_2:54355346-54355365 | Msa0258170:intron | 20.0% |
| !! | TTTGCATATATAAAAGAGAA+TGG | - | chr2_2:54355876-54355895 | Msa0258170:intron | 20.0% |
| !!! | GTTGAGTTTTATTGTTTCTT+AGG | - | chr2_2:54354554-54354573 | Msa0258170:CDS | 25.0% |
| !! | TATTGTTTCTTAGGATATGA+TGG | - | chr2_2:54354563-54354582 | Msa0258170:CDS | 25.0% |
| ! | TATAGATCTAGCTAACAAAT+TGG | + | chr2_2:54354770-54354789 | None:intergenic | 25.0% |
| ! | CAAAATCAGTGATATGATAA+AGG | + | chr2_2:54355292-54355311 | None:intergenic | 25.0% |
| ! | CTCTTGAATATGAATAAGTA+CGG | + | chr2_2:54355597-54355616 | None:intergenic | 25.0% |
| !!! | AACTTTTTAGCCTTTTCTTT+TGG | + | chr2_2:54355975-54355994 | None:intergenic | 25.0% |
| !!! | GTTGAGTTTTATTGTTTCTT+AGG | - | chr2_2:54354554-54354573 | Msa0258170:CDS | 25.0% |
| !! | TATTGTTTCTTAGGATATGA+TGG | - | chr2_2:54354563-54354582 | Msa0258170:CDS | 25.0% |
| ! | TATAGATCTAGCTAACAAAT+TGG | + | chr2_2:54354770-54354789 | None:intergenic | 25.0% |
| ! | CAAAATCAGTGATATGATAA+AGG | + | chr2_2:54355292-54355311 | None:intergenic | 25.0% |
| ! | CTCTTGAATATGAATAAGTA+CGG | + | chr2_2:54355597-54355616 | None:intergenic | 25.0% |
| !!! | AACTTTTTAGCCTTTTCTTT+TGG | + | chr2_2:54355975-54355994 | None:intergenic | 25.0% |
| ! | GACAATCACAACATTTTTCA+TGG | - | chr2_2:54354611-54354630 | Msa0258170:CDS | 30.0% |
| TTACCAATCTTCATTCTCTT+AGG | + | chr2_2:54355064-54355083 | None:intergenic | 30.0% | |
| GAAGTCACTTGATTGAAAAT+TGG | + | chr2_2:54355249-54355268 | None:intergenic | 30.0% | |
| ACATCATTATTCCTACCAAT+TGG | + | chr2_2:54355546-54355565 | None:intergenic | 30.0% | |
| TATGAATAAGTACGGTGTAT+GGG | + | chr2_2:54355589-54355608 | None:intergenic | 30.0% | |
| ATATGAATAAGTACGGTGTA+TGG | + | chr2_2:54355590-54355609 | None:intergenic | 30.0% | |
| GCATATATAAAAGAGAATGG+AGG | - | chr2_2:54355879-54355898 | Msa0258170:intron | 30.0% | |
| TTTCTTGAACGAAAAAGAGA+TGG | - | chr2_2:54355905-54355924 | Msa0258170:CDS | 30.0% | |
| ATTACTAGAGAAATCGATCA+AGG | - | chr2_2:54355941-54355960 | Msa0258170:CDS | 30.0% | |
| GGTATTAACACCAAAAGAAA+AGG | - | chr2_2:54355962-54355981 | Msa0258170:CDS | 30.0% | |
| AGAAAATGAAGAGAATGTAG+AGG | - | chr2_2:54356043-54356062 | Msa0258170:CDS | 30.0% | |
| CTTGAATTTGAACGATTAAC+AGG | + | chr2_2:54356131-54356150 | None:intergenic | 30.0% | |
| CGTTCAAATTCAAGAAGAAA+AGG | - | chr2_2:54356137-54356156 | Msa0258170:intron | 30.0% | |
| ! | GACAATCACAACATTTTTCA+TGG | - | chr2_2:54354611-54354630 | Msa0258170:CDS | 30.0% |
| TTACCAATCTTCATTCTCTT+AGG | + | chr2_2:54355064-54355083 | None:intergenic | 30.0% | |
| GAAGTCACTTGATTGAAAAT+TGG | + | chr2_2:54355249-54355268 | None:intergenic | 30.0% | |
| ACATCATTATTCCTACCAAT+TGG | + | chr2_2:54355546-54355565 | None:intergenic | 30.0% | |
| TATGAATAAGTACGGTGTAT+GGG | + | chr2_2:54355589-54355608 | None:intergenic | 30.0% | |
| ATATGAATAAGTACGGTGTA+TGG | + | chr2_2:54355590-54355609 | None:intergenic | 30.0% | |
| GCATATATAAAAGAGAATGG+AGG | - | chr2_2:54355879-54355898 | Msa0258170:intron | 30.0% | |
| TTTCTTGAACGAAAAAGAGA+TGG | - | chr2_2:54355905-54355924 | Msa0258170:CDS | 30.0% | |
| ATTACTAGAGAAATCGATCA+AGG | - | chr2_2:54355941-54355960 | Msa0258170:CDS | 30.0% | |
| GGTATTAACACCAAAAGAAA+AGG | - | chr2_2:54355962-54355981 | Msa0258170:CDS | 30.0% | |
| AGAAAATGAAGAGAATGTAG+AGG | - | chr2_2:54356043-54356062 | Msa0258170:CDS | 30.0% | |
| CTTGAATTTGAACGATTAAC+AGG | + | chr2_2:54356131-54356150 | None:intergenic | 30.0% | |
| CGTTCAAATTCAAGAAGAAA+AGG | - | chr2_2:54356137-54356156 | Msa0258170:intron | 30.0% | |
| TGTTTCTTAGGATATGATGG+TGG | - | chr2_2:54354566-54354585 | Msa0258170:CDS | 35.0% | |
| !! | ACTCATTTTTCGCTTCGTTT+TGG | + | chr2_2:54354650-54354669 | None:intergenic | 35.0% |
| ! | AAGTTTTGCCTTGATTGCAA+TGG | - | chr2_2:54354675-54354694 | Msa0258170:CDS | 35.0% |
| TCACATAAGTTTGAACTCCA+AGG | + | chr2_2:54354994-54355013 | None:intergenic | 35.0% | |
| CAATCTTCATTCTCTTAGGT+TGG | + | chr2_2:54355060-54355079 | None:intergenic | 35.0% | |
| CAACCTAAGAGAATGAAGAT+TGG | - | chr2_2:54355058-54355077 | Msa0258170:intron | 35.0% | |
| AAGTGGAATCTACGAGATTT+CGG | + | chr2_2:54355126-54355145 | None:intergenic | 35.0% | |
| !! | TTCCACTTACTTTTGCTCTT+TGG | - | chr2_2:54355138-54355157 | Msa0258170:intron | 35.0% |
| AAGGGAAAAAAATGAGATCG+AGG | + | chr2_2:54355184-54355203 | None:intergenic | 35.0% | |
| !!! | TCGATCTCATTTTTTTCCCT+TGG | - | chr2_2:54355183-54355202 | Msa0258170:intron | 35.0% |
| !!! | CGATCTCATTTTTTTCCCTT+GGG | - | chr2_2:54355184-54355203 | Msa0258170:intron | 35.0% |
| !!! | GATCTCATTTTTTTCCCTTG+GGG | - | chr2_2:54355185-54355204 | Msa0258170:intron | 35.0% |
| TGGTAGGAATAATGATGTGT+AGG | - | chr2_2:54355548-54355567 | Msa0258170:CDS | 35.0% | |
| GGTAGGAATAATGATGTGTA+GGG | - | chr2_2:54355549-54355568 | Msa0258170:CDS | 35.0% | |
| GTAGGAATAATGATGTGTAG+GGG | - | chr2_2:54355550-54355569 | Msa0258170:CDS | 35.0% | |
| ATGAATAAGTACGGTGTATG+GGG | + | chr2_2:54355588-54355607 | None:intergenic | 35.0% | |
| GAAGAAAAGGAATACCTCAT+CGG | - | chr2_2:54356150-54356169 | Msa0258170:intron | 35.0% | |
| AAGAAAAGGAATACCTCATC+GGG | - | chr2_2:54356151-54356170 | Msa0258170:intron | 35.0% | |
| TAAAAAAAAGTTGCCCGATG+AGG | + | chr2_2:54356167-54356186 | None:intergenic | 35.0% | |
| TGTTTCTTAGGATATGATGG+TGG | - | chr2_2:54354566-54354585 | Msa0258170:CDS | 35.0% | |
| !! | ACTCATTTTTCGCTTCGTTT+TGG | + | chr2_2:54354650-54354669 | None:intergenic | 35.0% |
| ! | AAGTTTTGCCTTGATTGCAA+TGG | - | chr2_2:54354675-54354694 | Msa0258170:CDS | 35.0% |
| TCACATAAGTTTGAACTCCA+AGG | + | chr2_2:54354994-54355013 | None:intergenic | 35.0% | |
| CAATCTTCATTCTCTTAGGT+TGG | + | chr2_2:54355060-54355079 | None:intergenic | 35.0% | |
| CAACCTAAGAGAATGAAGAT+TGG | - | chr2_2:54355058-54355077 | Msa0258170:intron | 35.0% | |
| AAGTGGAATCTACGAGATTT+CGG | + | chr2_2:54355126-54355145 | None:intergenic | 35.0% | |
| !! | TTCCACTTACTTTTGCTCTT+TGG | - | chr2_2:54355138-54355157 | Msa0258170:intron | 35.0% |
| AAGGGAAAAAAATGAGATCG+AGG | + | chr2_2:54355184-54355203 | None:intergenic | 35.0% | |
| !!! | TCGATCTCATTTTTTTCCCT+TGG | - | chr2_2:54355183-54355202 | Msa0258170:intron | 35.0% |
| !!! | CGATCTCATTTTTTTCCCTT+GGG | - | chr2_2:54355184-54355203 | Msa0258170:intron | 35.0% |
| !!! | GATCTCATTTTTTTCCCTTG+GGG | - | chr2_2:54355185-54355204 | Msa0258170:intron | 35.0% |
| TGGTAGGAATAATGATGTGT+AGG | - | chr2_2:54355548-54355567 | Msa0258170:CDS | 35.0% | |
| GGTAGGAATAATGATGTGTA+GGG | - | chr2_2:54355549-54355568 | Msa0258170:CDS | 35.0% | |
| GTAGGAATAATGATGTGTAG+GGG | - | chr2_2:54355550-54355569 | Msa0258170:CDS | 35.0% | |
| ATGAATAAGTACGGTGTATG+GGG | + | chr2_2:54355588-54355607 | None:intergenic | 35.0% | |
| GAAGAAAAGGAATACCTCAT+CGG | - | chr2_2:54356150-54356169 | Msa0258170:intron | 35.0% | |
| AAGAAAAGGAATACCTCATC+GGG | - | chr2_2:54356151-54356170 | Msa0258170:intron | 35.0% | |
| TAAAAAAAAGTTGCCCGATG+AGG | + | chr2_2:54356167-54356186 | None:intergenic | 35.0% | |
| ! | CATTTTTCGCTTCGTTTTGG+TGG | + | chr2_2:54354647-54354666 | None:intergenic | 40.0% |
| ! | ATGGATTGCCATTGCAATCA+AGG | + | chr2_2:54354686-54354705 | None:intergenic | 40.0% |
| TACAAGCATCTTGACATCCT+TGG | - | chr2_2:54354974-54354993 | Msa0258170:intron | 40.0% | |
| TGCCAAAGAGCAAAAGTAAG+TGG | + | chr2_2:54355143-54355162 | None:intergenic | 40.0% | |
| ! | CTTTTCAACCTTAGTGATCC+GGG | + | chr2_2:54355226-54355245 | None:intergenic | 40.0% |
| ! | GCTTTTCAACCTTAGTGATC+CGG | + | chr2_2:54355227-54355246 | None:intergenic | 40.0% |
| ! | TATTCCTACCAATTGGCTCA+CGG | + | chr2_2:54355539-54355558 | None:intergenic | 40.0% |
| ! | CATTTTTCGCTTCGTTTTGG+TGG | + | chr2_2:54354647-54354666 | None:intergenic | 40.0% |
| ! | ATGGATTGCCATTGCAATCA+AGG | + | chr2_2:54354686-54354705 | None:intergenic | 40.0% |
| TACAAGCATCTTGACATCCT+TGG | - | chr2_2:54354974-54354993 | Msa0258170:intron | 40.0% | |
| TGCCAAAGAGCAAAAGTAAG+TGG | + | chr2_2:54355143-54355162 | None:intergenic | 40.0% | |
| ! | CTTTTCAACCTTAGTGATCC+GGG | + | chr2_2:54355226-54355245 | None:intergenic | 40.0% |
| ! | GCTTTTCAACCTTAGTGATC+CGG | + | chr2_2:54355227-54355246 | None:intergenic | 40.0% |
| ! | TATTCCTACCAATTGGCTCA+CGG | + | chr2_2:54355539-54355558 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTGTG+TGG | - | chr2_2:54354690-54354709 | Msa0258170:CDS | 45.0% | |
| TCCATTGTGTGGATCTTGCA+CGG | - | chr2_2:54354701-54354720 | Msa0258170:CDS | 45.0% | |
| !! | CAACACTGACTTGGATCACT+CGG | + | chr2_2:54354746-54354765 | None:intergenic | 45.0% |
| ! | CAAATTGGCCAACACTGACT+TGG | + | chr2_2:54354755-54354774 | None:intergenic | 45.0% |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | chr2_2:54355147-54355166 | Msa0258170:intron | 45.0% |
| TGAAGAGAATGTAGAGGACG+AGG | - | chr2_2:54356049-54356068 | Msa0258170:CDS | 45.0% | |
| GGAGGAGAAAGAGAAGAAGA+CGG | - | chr2_2:54356086-54356105 | Msa0258170:intron | 45.0% | |
| TGCAATGGCAATCCATTGTG+TGG | - | chr2_2:54354690-54354709 | Msa0258170:CDS | 45.0% | |
| TCCATTGTGTGGATCTTGCA+CGG | - | chr2_2:54354701-54354720 | Msa0258170:CDS | 45.0% | |
| !! | CAACACTGACTTGGATCACT+CGG | + | chr2_2:54354746-54354765 | None:intergenic | 45.0% |
| ! | CAAATTGGCCAACACTGACT+TGG | + | chr2_2:54354755-54354774 | None:intergenic | 45.0% |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | chr2_2:54355147-54355166 | Msa0258170:intron | 45.0% |
| TGAAGAGAATGTAGAGGACG+AGG | - | chr2_2:54356049-54356068 | Msa0258170:CDS | 45.0% | |
| GGAGGAGAAAGAGAAGAAGA+CGG | - | chr2_2:54356086-54356105 | Msa0258170:intron | 45.0% | |
| TCCGTGCAAGATCCACACAA+TGG | + | chr2_2:54354705-54354724 | None:intergenic | 50.0% | |
| CGAGTGATCCAAGTCAGTGT+TGG | - | chr2_2:54354744-54354763 | Msa0258170:CDS | 50.0% | |
| TCGAGACTATCACACCCCAA+GGG | + | chr2_2:54355202-54355221 | None:intergenic | 50.0% | |
| TTCGAGACTATCACACCCCA+AGG | + | chr2_2:54355203-54355222 | None:intergenic | 50.0% | |
| ATGTGTCTCCGTGAGCCAAT+TGG | - | chr2_2:54355528-54355547 | Msa0258170:CDS | 50.0% | |
| GAGGACGAGGATGATGAAGA+AGG | - | chr2_2:54356062-54356081 | Msa0258170:CDS | 50.0% | |
| GACGAGGATGATGAAGAAGG+AGG | - | chr2_2:54356065-54356084 | Msa0258170:intron | 50.0% | |
| GAGGATGATGAAGAAGGAGG+AGG | - | chr2_2:54356068-54356087 | Msa0258170:intron | 50.0% | |
| TCCGTGCAAGATCCACACAA+TGG | + | chr2_2:54354705-54354724 | None:intergenic | 50.0% | |
| CGAGTGATCCAAGTCAGTGT+TGG | - | chr2_2:54354744-54354763 | Msa0258170:CDS | 50.0% | |
| TCGAGACTATCACACCCCAA+GGG | + | chr2_2:54355202-54355221 | None:intergenic | 50.0% | |
| TTCGAGACTATCACACCCCA+AGG | + | chr2_2:54355203-54355222 | None:intergenic | 50.0% | |
| ATGTGTCTCCGTGAGCCAAT+TGG | - | chr2_2:54355528-54355547 | Msa0258170:CDS | 50.0% | |
| GAGGACGAGGATGATGAAGA+AGG | - | chr2_2:54356062-54356081 | Msa0258170:CDS | 50.0% | |
| GACGAGGATGATGAAGAAGG+AGG | - | chr2_2:54356065-54356084 | Msa0258170:intron | 50.0% | |
| GAGGATGATGAAGAAGGAGG+AGG | - | chr2_2:54356068-54356087 | Msa0258170:intron | 50.0% | |
| !! | AGGATATGATGGTGGTGCCC+TGG | - | chr2_2:54354574-54354593 | Msa0258170:CDS | 55.0% |
| GTCAGCAACTTCTCGAGCCA+GGG | + | chr2_2:54354594-54354613 | None:intergenic | 55.0% | |
| TGTCAGCAACTTCTCGAGCC+AGG | + | chr2_2:54354595-54354614 | None:intergenic | 55.0% | |
| !! | CACTGACTTGGATCACTCGG+TGG | + | chr2_2:54354743-54354762 | None:intergenic | 55.0% |
| GGGTGTGATAGTCTCGAACC+CGG | - | chr2_2:54355205-54355224 | Msa0258170:intron | 55.0% | |
| GTCTCGAACCCGGATCACTA+AGG | - | chr2_2:54355215-54355234 | Msa0258170:intron | 55.0% | |
| GTCTCCGTGAGCCAATTGGT+AGG | - | chr2_2:54355532-54355551 | Msa0258170:CDS | 55.0% | |
| !! | AGGATATGATGGTGGTGCCC+TGG | - | chr2_2:54354574-54354593 | Msa0258170:CDS | 55.0% |
| GTCAGCAACTTCTCGAGCCA+GGG | + | chr2_2:54354594-54354613 | None:intergenic | 55.0% | |
| TGTCAGCAACTTCTCGAGCC+AGG | + | chr2_2:54354595-54354614 | None:intergenic | 55.0% | |
| !! | CACTGACTTGGATCACTCGG+TGG | + | chr2_2:54354743-54354762 | None:intergenic | 55.0% |
| GGGTGTGATAGTCTCGAACC+CGG | - | chr2_2:54355205-54355224 | Msa0258170:intron | 55.0% | |
| GTCTCGAACCCGGATCACTA+AGG | - | chr2_2:54355215-54355234 | Msa0258170:intron | 55.0% | |
| GTCTCCGTGAGCCAATTGGT+AGG | - | chr2_2:54355532-54355551 | Msa0258170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54354472 | 54356187 | 54354472 | ID=Msa0258170;Name=Msa0258170 |
| chr2_2 | mRNA | 54354472 | 54356187 | 54354472 | ID=Msa0258170-mRNA-1;Parent=Msa0258170;Name=Msa0258170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|1|1|4|0|248 |
| chr2_2 | exon | 54356173 | 54356187 | 54356173 | ID=Msa0258170-mRNA-1:exon:16320;Parent=Msa0258170-mRNA-1 |
| chr2_2 | exon | 54355904 | 54356083 | 54355904 | ID=Msa0258170-mRNA-1:exon:16319;Parent=Msa0258170-mRNA-1 |
| chr2_2 | exon | 54355491 | 54355730 | 54355491 | ID=Msa0258170-mRNA-1:exon:16318;Parent=Msa0258170-mRNA-1 |
| chr2_2 | exon | 54354472 | 54354783 | 54354472 | ID=Msa0258170-mRNA-1:exon:16317;Parent=Msa0258170-mRNA-1 |
| chr2_2 | CDS | 54356173 | 54356187 | 54356173 | ID=Msa0258170-mRNA-1:cds;Parent=Msa0258170-mRNA-1 |
| chr2_2 | CDS | 54355904 | 54356083 | 54355904 | ID=Msa0258170-mRNA-1:cds;Parent=Msa0258170-mRNA-1 |
| chr2_2 | CDS | 54355491 | 54355730 | 54355491 | ID=Msa0258170-mRNA-1:cds;Parent=Msa0258170-mRNA-1 |
| chr2_2 | CDS | 54354472 | 54354783 | 54354472 | ID=Msa0258170-mRNA-1:cds;Parent=Msa0258170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
