Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0258750 | XP_003596811.1 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 1.11e-165 | 470 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0258750 | sp|Q8RYD6|AI5L1_ARATH | 41.958 | 286 | 119 | 10 | 18 | 265 | 43 | 319 | 2.17e-47 | 163 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0258750 | G7ITS3 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 5.30e-166 | 470 |
Gene ID | Type | Classification |
---|---|---|
Msa0258750 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0258750 | MtrunA17_Chr2g0321411 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 1.02e-169 | 470 |
Msa0258750 | MtrunA17_Chr2g0321381 | 63.542 | 288 | 56 | 7 | 1 | 240 | 1 | 287 | 9.82e-108 | 314 |
Msa0258750 | MtrunA17_Chr3g0080341 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 4.27e-26 | 104 |
Msa0258750 | MtrunA17_Chr8g0355121 | 35.581 | 267 | 112 | 12 | 18 | 237 | 32 | 285 | 7.27e-26 | 103 |
Msa0258750 | MtrunA17_Chr7g0254991 | 33.216 | 283 | 112 | 10 | 19 | 238 | 25 | 293 | 3.57e-24 | 99.4 |
Msa0258750 | MtrunA17_Chr7g0266211 | 41.481 | 135 | 62 | 3 | 18 | 135 | 47 | 181 | 8.67e-23 | 96.7 |
Msa0258750 | MtrunA17_Chr7g0266211 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 9.86e-21 | 90.9 |
Msa0258750 | MtrunA17_Chr6g0460301 | 32.609 | 276 | 122 | 9 | 19 | 237 | 25 | 293 | 1.18e-17 | 81.3 |
Msa0258750 | MtrunA17_Chr5g0440841 | 30.568 | 229 | 133 | 6 | 18 | 237 | 30 | 241 | 2.17e-17 | 79.7 |
Msa0258750 | MtrunA17_Chr3g0133971 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 3.06e-15 | 75.1 |
Msa0258750 | MtrunA17_Chr3g0133971 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 1.49e-13 | 70.1 |
Msa0258750 | MtrunA17_Chr4g0044771 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 4.44e-13 | 68.6 |
Msa0258750 | MtrunA17_Chr4g0051101 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.45e-12 | 65.1 |
Msa0258750 | MtrunA17_Chr1g0201751 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 3.96e-11 | 61.6 |
Msa0258750 | MtrunA17_Chr5g0405951 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 5.15e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0258750 | AT3G44460.1 | 41.958 | 286 | 119 | 10 | 18 | 265 | 43 | 319 | 2.20e-48 | 163 |
Msa0258750 | AT3G56850.1 | 34.615 | 260 | 116 | 11 | 18 | 237 | 24 | 269 | 7.19e-28 | 108 |
Msa0258750 | AT2G36270.3 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.69e-27 | 110 |
Msa0258750 | AT2G36270.3 | 45.333 | 75 | 28 | 2 | 71 | 132 | 145 | 219 | 1.41e-11 | 64.7 |
Msa0258750 | AT2G36270.1 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.15e-27 | 110 |
Msa0258750 | AT2G36270.1 | 31.638 | 177 | 57 | 6 | 18 | 132 | 45 | 219 | 7.43e-15 | 74.3 |
Msa0258750 | AT2G36270.2 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.15e-27 | 110 |
Msa0258750 | AT2G36270.2 | 31.638 | 177 | 57 | 6 | 18 | 132 | 45 | 219 | 7.43e-15 | 74.3 |
Msa0258750 | AT2G41070.5 | 32.127 | 221 | 115 | 4 | 27 | 238 | 41 | 235 | 4.90e-25 | 100 |
Msa0258750 | AT2G41070.3 | 32.127 | 221 | 115 | 4 | 27 | 238 | 41 | 235 | 1.00e-24 | 99.8 |
Msa0258750 | AT2G41070.1 | 32.127 | 221 | 115 | 4 | 27 | 238 | 41 | 235 | 1.00e-24 | 99.8 |
Msa0258750 | AT2G41070.2 | 32.127 | 221 | 115 | 4 | 27 | 238 | 41 | 235 | 1.00e-24 | 99.8 |
Msa0258750 | AT2G41070.4 | 32.127 | 221 | 115 | 4 | 27 | 238 | 50 | 244 | 1.20e-24 | 99.8 |
Msa0258750 | AT5G44080.1 | 29.787 | 188 | 99 | 5 | 81 | 252 | 120 | 290 | 1.17e-15 | 75.9 |
Msa0258750 | AT1G45249.1 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 8.78e-15 | 73.9 |
Msa0258750 | AT1G45249.7 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.06e-14 | 73.9 |
Msa0258750 | AT1G45249.6 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.06e-14 | 73.9 |
Msa0258750 | AT1G03970.1 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 3.22e-14 | 71.2 |
Msa0258750 | AT4G34000.1 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 6.74e-14 | 71.6 |
Msa0258750 | AT4G34000.4 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 6.74e-14 | 71.6 |
Msa0258750 | AT4G34000.2 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 6.74e-14 | 71.6 |
Msa0258750 | AT3G19290.1 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.55e-13 | 70.5 |
Msa0258750 | AT3G19290.5 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.55e-13 | 70.5 |
Msa0258750 | AT3G19290.4 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.67e-13 | 70.5 |
Msa0258750 | AT3G19290.3 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.10e-13 | 69.7 |
Msa0258750 | AT1G49720.1 | 34.351 | 131 | 71 | 4 | 26 | 148 | 47 | 170 | 2.26e-12 | 67.0 |
Msa0258750 | AT1G49720.1 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.19e-12 | 65.5 |
Msa0258750 | AT1G49720.3 | 34.351 | 131 | 71 | 4 | 26 | 148 | 47 | 170 | 2.26e-12 | 67.0 |
Msa0258750 | AT1G49720.3 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.19e-12 | 65.5 |
Msa0258750 | AT2G17770.2 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 2.42e-12 | 64.7 |
Msa0258750 | AT1G49720.2 | 34.351 | 131 | 71 | 4 | 26 | 148 | 47 | 170 | 2.58e-12 | 66.6 |
Msa0258750 | AT1G49720.2 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 8.65e-12 | 65.1 |
Msa0258750 | AT4G34000.3 | 49.333 | 75 | 28 | 2 | 163 | 237 | 352 | 416 | 3.16e-12 | 66.6 |
Msa0258750 | AT1G45249.3 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 6.69e-12 | 65.5 |
Msa0258750 | AT4G35900.1 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 6.05e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2_2:+55371089 | None:intergenic |
ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2_2:-55371530 | Msa0258750:CDS |
TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2_2:-55370563 | Msa0258750:intron |
CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2_2:+55371138 | None:intergenic |
TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2_2:+55371063 | None:intergenic |
CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2_2:-55371177 | Msa0258750:CDS |
ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2_2:+55371127 | None:intergenic |
AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2_2:-55371389 | Msa0258750:CDS |
CAAAGTTGTTGAAATCATCT+AGG | 0.405368 | 2_2:+55371568 | None:intergenic |
GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2_2:-55370312 | Msa0258750:CDS |
GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2_2:+55371434 | None:intergenic |
ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2_2:+55371518 | None:intergenic |
TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2_2:+55371349 | None:intergenic |
GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2_2:-55371267 | Msa0258750:CDS |
GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2_2:+55370262 | None:intergenic |
AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2_2:+55371433 | None:intergenic |
ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2_2:+55371440 | None:intergenic |
CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2_2:-55371444 | Msa0258750:CDS |
TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2_2:+55371285 | None:intergenic |
CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2_2:-55370311 | Msa0258750:CDS |
TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2_2:+55371064 | None:intergenic |
TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2_2:+55371542 | None:intergenic |
TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2_2:+55371503 | None:intergenic |
ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2_2:-55371004 | Msa0258750:intron |
ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2_2:-55371090 | Msa0258750:CDS |
TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2_2:-55371400 | Msa0258750:CDS |
AAAGTTGTTGAAATCATCTA+GGG | 0.545896 | 2_2:+55371569 | None:intergenic |
GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2_2:-55370321 | Msa0258750:CDS |
TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2_2:-55371222 | Msa0258750:CDS |
CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2_2:+55371066 | None:intergenic |
CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2_2:+55371541 | None:intergenic |
CAACTTTGACTCCCTCAACA+TGG | 0.568231 | 2_2:-55371553 | Msa0258750:CDS |
CTCAAGAAGCAAGAAACACC+TGG | 0.571531 | 2_2:-55371303 | Msa0258750:CDS |
AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2_2:-55370443 | Msa0258750:CDS |
TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2_2:+55371523 | None:intergenic |
TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2_2:-55371622 | Msa0258750:CDS |
AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2_2:-55370280 | Msa0258750:CDS |
GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2_2:-55371101 | Msa0258750:CDS |
GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2_2:-55370614 | Msa0258750:CDS |
GCAACATACCAAATGACAAG+TGG | 0.610150 | 2_2:-55371135 | Msa0258750:CDS |
ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2_2:-55371120 | Msa0258750:CDS |
CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2_2:+55371177 | None:intergenic |
TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2_2:+55371065 | None:intergenic |
TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2_2:-55370433 | Msa0258750:intron |
AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2_2:-55370310 | Msa0258750:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2_2:55370562-55370581 | None:intergenic | 20.0% |
!! | TACTTATTAATCACATAACT+TGG | - | chr2_2:55370968-55370987 | Msa0258750:intron | 20.0% |
!!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2_2:55371255-55371274 | None:intergenic | 20.0% |
!!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2_2:55371441-55371460 | Msa0258750:CDS | 20.0% |
!!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2_2:55370562-55370581 | None:intergenic | 20.0% |
!! | TACTTATTAATCACATAACT+TGG | - | chr2_2:55370968-55370987 | Msa0258750:intron | 20.0% |
!!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2_2:55371255-55371274 | None:intergenic | 20.0% |
!!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2_2:55371441-55371460 | Msa0258750:CDS | 20.0% |
! | AAAGTTGTTGAAATCATCTA+GGG | + | chr2_2:55370338-55370357 | None:intergenic | 25.0% |
! | AATGATGAAAAATCGAGAAT+CGG | - | chr2_2:55370873-55370892 | Msa0258750:intron | 25.0% |
!! | AGATTTTAAATAACAGTCTG+TGG | - | chr2_2:55371150-55371169 | Msa0258750:CDS | 25.0% |
!!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2_2:55371204-55371223 | Msa0258750:CDS | 25.0% |
!!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2_2:55371205-55371224 | Msa0258750:CDS | 25.0% |
! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2_2:55371269-55371288 | Msa0258750:CDS | 25.0% |
! | TAAAATGCTGAAACAATTTC+TGG | - | chr2_2:55371341-55371360 | Msa0258750:CDS | 25.0% |
! | CAATACTGAAACTGAATATA+CGG | - | chr2_2:55371368-55371387 | Msa0258750:CDS | 25.0% |
! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2_2:55371446-55371465 | None:intergenic | 25.0% |
! | AAAGTTGTTGAAATCATCTA+GGG | + | chr2_2:55370338-55370357 | None:intergenic | 25.0% |
! | AATGATGAAAAATCGAGAAT+CGG | - | chr2_2:55370873-55370892 | Msa0258750:intron | 25.0% |
!! | AGATTTTAAATAACAGTCTG+TGG | - | chr2_2:55371150-55371169 | Msa0258750:CDS | 25.0% |
!!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2_2:55371204-55371223 | Msa0258750:CDS | 25.0% |
!!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2_2:55371205-55371224 | Msa0258750:CDS | 25.0% |
! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2_2:55371269-55371288 | Msa0258750:CDS | 25.0% |
! | TAAAATGCTGAAACAATTTC+TGG | - | chr2_2:55371341-55371360 | Msa0258750:CDS | 25.0% |
! | CAATACTGAAACTGAATATA+CGG | - | chr2_2:55371368-55371387 | Msa0258750:CDS | 25.0% |
! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2_2:55371446-55371465 | None:intergenic | 25.0% |
TCTACAACAATTAGATCAAG+AGG | - | chr2_2:55370282-55370301 | Msa0258750:CDS | 30.0% | |
CAAAGTTGTTGAAATCATCT+AGG | + | chr2_2:55370339-55370358 | None:intergenic | 30.0% | |
!!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2_2:55370542-55370561 | None:intergenic | 30.0% |
TTTCTTCTTTGAATTGTGGT+TGG | + | chr2_2:55370558-55370577 | None:intergenic | 30.0% | |
! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2_2:55370585-55370604 | None:intergenic | 30.0% |
!! | AATGACTTTTGAGGATTTCT+TGG | - | chr2_2:55370627-55370646 | Msa0258750:intron | 30.0% |
TAAAATCGTGTTTACCTTTG+CGG | - | chr2_2:55371012-55371031 | Msa0258750:CDS | 30.0% | |
TCTACAACAATTAGATCAAG+AGG | - | chr2_2:55370282-55370301 | Msa0258750:CDS | 30.0% | |
CAAAGTTGTTGAAATCATCT+AGG | + | chr2_2:55370339-55370358 | None:intergenic | 30.0% | |
!!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2_2:55370542-55370561 | None:intergenic | 30.0% |
TTTCTTCTTTGAATTGTGGT+TGG | + | chr2_2:55370558-55370577 | None:intergenic | 30.0% | |
! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2_2:55370585-55370604 | None:intergenic | 30.0% |
!! | AATGACTTTTGAGGATTTCT+TGG | - | chr2_2:55370627-55370646 | Msa0258750:intron | 30.0% |
TAAAATCGTGTTTACCTTTG+CGG | - | chr2_2:55371012-55371031 | Msa0258750:CDS | 30.0% | |
TCCAGTTTGCAAGAAAACTT+CGG | - | chr2_2:55370504-55370523 | Msa0258750:intron | 35.0% | |
AGAAAACTTCGGATGAAGTT+TGG | - | chr2_2:55370515-55370534 | Msa0258750:intron | 35.0% | |
! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2_2:55370682-55370701 | Msa0258750:intron | 35.0% |
ACCAGAAAGAGGATAATTGA+TGG | - | chr2_2:55370814-55370833 | Msa0258750:intron | 35.0% | |
ACCATCAATTATCCTCTTTC+TGG | + | chr2_2:55370818-55370837 | None:intergenic | 35.0% | |
TTGGATTTATCGCGAAATCA+AGG | + | chr2_2:55371050-55371069 | None:intergenic | 35.0% | |
AAATCCAACACAAATGTGAC+AGG | - | chr2_2:55371062-55371081 | Msa0258750:CDS | 35.0% | |
TTATGTCACAGCCTAAATCA+CGG | + | chr2_2:55371176-55371195 | None:intergenic | 35.0% | |
!! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2_2:55371209-55371228 | Msa0258750:CDS | 35.0% |
CAATCAGCAAAGGTTCAAAA+GGG | - | chr2_2:55371593-55371612 | Msa0258750:CDS | 35.0% | |
AATCAGCAAAGGTTCAAAAG+GGG | - | chr2_2:55371594-55371613 | Msa0258750:CDS | 35.0% | |
TCCAGTTTGCAAGAAAACTT+CGG | - | chr2_2:55370504-55370523 | Msa0258750:intron | 35.0% | |
AGAAAACTTCGGATGAAGTT+TGG | - | chr2_2:55370515-55370534 | Msa0258750:intron | 35.0% | |
! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2_2:55370682-55370701 | Msa0258750:intron | 35.0% |
ACCAGAAAGAGGATAATTGA+TGG | - | chr2_2:55370814-55370833 | Msa0258750:intron | 35.0% | |
ACCATCAATTATCCTCTTTC+TGG | + | chr2_2:55370818-55370837 | None:intergenic | 35.0% | |
TTGGATTTATCGCGAAATCA+AGG | + | chr2_2:55371050-55371069 | None:intergenic | 35.0% | |
AAATCCAACACAAATGTGAC+AGG | - | chr2_2:55371062-55371081 | Msa0258750:CDS | 35.0% | |
TTATGTCACAGCCTAAATCA+CGG | + | chr2_2:55371176-55371195 | None:intergenic | 35.0% | |
!! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2_2:55371209-55371228 | Msa0258750:CDS | 35.0% |
CAATCAGCAAAGGTTCAAAA+GGG | - | chr2_2:55371593-55371612 | Msa0258750:CDS | 35.0% | |
AATCAGCAAAGGTTCAAAAG+GGG | - | chr2_2:55371594-55371613 | Msa0258750:CDS | 35.0% | |
!!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2_2:55370316-55370335 | None:intergenic | 40.0% |
TAGGAACTCATCCATGTTGA+GGG | + | chr2_2:55370365-55370384 | None:intergenic | 40.0% | |
ATGAGTTCCTAGCCAGTATT+TGG | - | chr2_2:55370374-55370393 | Msa0258750:intron | 40.0% | |
ATCACTGGAACTCCAAATAC+TGG | + | chr2_2:55370389-55370408 | None:intergenic | 40.0% | |
TTGTGTAGTAGCTTCATCAC+TGG | + | chr2_2:55370404-55370423 | None:intergenic | 40.0% | |
GACTGAATCACCAAGTTGTT+GGG | + | chr2_2:55370473-55370492 | None:intergenic | 40.0% | |
AGACTGAATCACCAAGTTGT+TGG | + | chr2_2:55370474-55370493 | None:intergenic | 40.0% | |
! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2_2:55370501-55370520 | None:intergenic | 40.0% |
! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2_2:55370505-55370524 | None:intergenic | 40.0% |
! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2_2:55370508-55370527 | None:intergenic | 40.0% |
! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2_2:55370618-55370637 | Msa0258750:intron | 40.0% |
TCCTCAAAAGTCATTTCTCC+AGG | + | chr2_2:55370622-55370641 | None:intergenic | 40.0% | |
GAGGATTTCTTGGTAAAAGC+TGG | - | chr2_2:55370637-55370656 | Msa0258750:intron | 40.0% | |
CCAGAACTTGCAATATTCAG+TGG | + | chr2_2:55370730-55370749 | None:intergenic | 40.0% | |
CCACTGAATATTGCAAGTTC+TGG | - | chr2_2:55370727-55370746 | Msa0258750:intron | 40.0% | |
! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2_2:55370769-55370788 | None:intergenic | 40.0% |
GCAACATACCAAATGACAAG+TGG | - | chr2_2:55370769-55370788 | Msa0258750:intron | 40.0% | |
TTCGCTCCAATAGAACTTCA+GGG | + | chr2_2:55370843-55370862 | None:intergenic | 40.0% | |
TTTCGCTCCAATAGAACTTC+AGG | + | chr2_2:55370844-55370863 | None:intergenic | 40.0% | |
TGAACCTGTCACATTTGTGT+TGG | + | chr2_2:55371069-55371088 | None:intergenic | 40.0% | |
GTGATTTAGGCTGTGACATA+AGG | - | chr2_2:55371175-55371194 | Msa0258750:CDS | 40.0% | |
GGCTTATACAATAGAGCTAG+AGG | - | chr2_2:55371290-55371309 | Msa0258750:CDS | 40.0% | |
TGAGAACAAGAGGAAACAAG+AGG | - | chr2_2:55371471-55371490 | Msa0258750:CDS | 40.0% | |
GCAAAGAAAGCAATCAGCAA+AGG | - | chr2_2:55371583-55371602 | Msa0258750:CDS | 40.0% | |
GCAATCAGCAAAGGTTCAAA+AGG | - | chr2_2:55371592-55371611 | Msa0258750:CDS | 40.0% | |
!!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2_2:55370316-55370335 | None:intergenic | 40.0% |
TAGGAACTCATCCATGTTGA+GGG | + | chr2_2:55370365-55370384 | None:intergenic | 40.0% | |
ATGAGTTCCTAGCCAGTATT+TGG | - | chr2_2:55370374-55370393 | Msa0258750:intron | 40.0% | |
ATCACTGGAACTCCAAATAC+TGG | + | chr2_2:55370389-55370408 | None:intergenic | 40.0% | |
TTGTGTAGTAGCTTCATCAC+TGG | + | chr2_2:55370404-55370423 | None:intergenic | 40.0% | |
GACTGAATCACCAAGTTGTT+GGG | + | chr2_2:55370473-55370492 | None:intergenic | 40.0% | |
AGACTGAATCACCAAGTTGT+TGG | + | chr2_2:55370474-55370493 | None:intergenic | 40.0% | |
! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2_2:55370501-55370520 | None:intergenic | 40.0% |
! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2_2:55370505-55370524 | None:intergenic | 40.0% |
! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2_2:55370508-55370527 | None:intergenic | 40.0% |
! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2_2:55370618-55370637 | Msa0258750:intron | 40.0% |
TCCTCAAAAGTCATTTCTCC+AGG | + | chr2_2:55370622-55370641 | None:intergenic | 40.0% | |
GAGGATTTCTTGGTAAAAGC+TGG | - | chr2_2:55370637-55370656 | Msa0258750:intron | 40.0% | |
CCAGAACTTGCAATATTCAG+TGG | + | chr2_2:55370730-55370749 | None:intergenic | 40.0% | |
CCACTGAATATTGCAAGTTC+TGG | - | chr2_2:55370727-55370746 | Msa0258750:intron | 40.0% | |
! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2_2:55370769-55370788 | None:intergenic | 40.0% |
GCAACATACCAAATGACAAG+TGG | - | chr2_2:55370769-55370788 | Msa0258750:intron | 40.0% | |
TTCGCTCCAATAGAACTTCA+GGG | + | chr2_2:55370843-55370862 | None:intergenic | 40.0% | |
TTTCGCTCCAATAGAACTTC+AGG | + | chr2_2:55370844-55370863 | None:intergenic | 40.0% | |
TGAACCTGTCACATTTGTGT+TGG | + | chr2_2:55371069-55371088 | None:intergenic | 40.0% | |
GTGATTTAGGCTGTGACATA+AGG | - | chr2_2:55371175-55371194 | Msa0258750:CDS | 40.0% | |
GGCTTATACAATAGAGCTAG+AGG | - | chr2_2:55371290-55371309 | Msa0258750:CDS | 40.0% | |
TGAGAACAAGAGGAAACAAG+AGG | - | chr2_2:55371471-55371490 | Msa0258750:CDS | 40.0% | |
GCAAAGAAAGCAATCAGCAA+AGG | - | chr2_2:55371583-55371602 | Msa0258750:CDS | 40.0% | |
GCAATCAGCAAAGGTTCAAA+AGG | - | chr2_2:55371592-55371611 | Msa0258750:CDS | 40.0% | |
CAACTTTGACTCCCTCAACA+TGG | - | chr2_2:55370351-55370370 | Msa0258750:intron | 45.0% | |
CTAGGAACTCATCCATGTTG+AGG | + | chr2_2:55370366-55370385 | None:intergenic | 45.0% | |
! | TGGAACTCCAAATACTGGCT+AGG | + | chr2_2:55370384-55370403 | None:intergenic | 45.0% |
ATCACCAAGTTGTTGGGAAC+TGG | + | chr2_2:55370467-55370486 | None:intergenic | 45.0% | |
! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2_2:55370502-55370521 | None:intergenic | 45.0% |
CTCAAGAAGCAAGAAACACC+TGG | - | chr2_2:55370601-55370620 | Msa0258750:CDS | 45.0% | |
ACTCAGCTCCACTTGTCATT+TGG | + | chr2_2:55370780-55370799 | None:intergenic | 45.0% | |
TCGCTCCAATAGAACTTCAG+GGG | + | chr2_2:55370842-55370861 | None:intergenic | 45.0% | |
! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2_2:55370987-55371006 | Msa0258750:intron | 45.0% |
AAAGTCTGTGACCGTGATTG+AGG | + | chr2_2:55371093-55371112 | None:intergenic | 45.0% | |
! | GCAAACGTTACGGACTATCA+CGG | + | chr2_2:55371245-55371264 | None:intergenic | 45.0% |
AATCAAGCTCAAGCACAACC+TGG | - | chr2_2:55371624-55371643 | Msa0258750:CDS | 45.0% | |
CAACTTTGACTCCCTCAACA+TGG | - | chr2_2:55370351-55370370 | Msa0258750:intron | 45.0% | |
CTAGGAACTCATCCATGTTG+AGG | + | chr2_2:55370366-55370385 | None:intergenic | 45.0% | |
! | TGGAACTCCAAATACTGGCT+AGG | + | chr2_2:55370384-55370403 | None:intergenic | 45.0% |
ATCACCAAGTTGTTGGGAAC+TGG | + | chr2_2:55370467-55370486 | None:intergenic | 45.0% | |
! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2_2:55370502-55370521 | None:intergenic | 45.0% |
CTCAAGAAGCAAGAAACACC+TGG | - | chr2_2:55370601-55370620 | Msa0258750:CDS | 45.0% | |
ACTCAGCTCCACTTGTCATT+TGG | + | chr2_2:55370780-55370799 | None:intergenic | 45.0% | |
TCGCTCCAATAGAACTTCAG+GGG | + | chr2_2:55370842-55370861 | None:intergenic | 45.0% | |
! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2_2:55370987-55371006 | Msa0258750:intron | 45.0% |
AAAGTCTGTGACCGTGATTG+AGG | + | chr2_2:55371093-55371112 | None:intergenic | 45.0% | |
! | GCAAACGTTACGGACTATCA+CGG | + | chr2_2:55371245-55371264 | None:intergenic | 45.0% |
AATCAAGCTCAAGCACAACC+TGG | - | chr2_2:55371624-55371643 | Msa0258750:CDS | 45.0% | |
CACACCAGTTCCCAACAACT+TGG | - | chr2_2:55370460-55370479 | Msa0258750:intron | 50.0% | |
ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2_2:55370784-55370803 | Msa0258750:intron | 50.0% | |
TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2_2:55370834-55370853 | Msa0258750:intron | 50.0% | |
CGCTCCAATAGAACTTCAGG+GGG | + | chr2_2:55370841-55370860 | None:intergenic | 50.0% | |
GACAGGTTCAGCCTCAATCA+CGG | - | chr2_2:55371079-55371098 | Msa0258750:CDS | 50.0% | |
ACAGTCTGTGGCCGTGATTT+AGG | - | chr2_2:55371162-55371181 | Msa0258750:CDS | 50.0% | |
AGGCTGAAGCTGAGAACAAG+AGG | - | chr2_2:55371461-55371480 | Msa0258750:CDS | 50.0% | |
CACACCAGTTCCCAACAACT+TGG | - | chr2_2:55370460-55370479 | Msa0258750:intron | 50.0% | |
ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2_2:55370784-55370803 | Msa0258750:intron | 50.0% | |
TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2_2:55370834-55370853 | Msa0258750:intron | 50.0% | |
CGCTCCAATAGAACTTCAGG+GGG | + | chr2_2:55370841-55370860 | None:intergenic | 50.0% | |
GACAGGTTCAGCCTCAATCA+CGG | - | chr2_2:55371079-55371098 | Msa0258750:CDS | 50.0% | |
ACAGTCTGTGGCCGTGATTT+AGG | - | chr2_2:55371162-55371181 | Msa0258750:CDS | 50.0% | |
AGGCTGAAGCTGAGAACAAG+AGG | - | chr2_2:55371461-55371480 | Msa0258750:CDS | 50.0% | |
GTGGAGCTGCTACCAGAAAG+AGG | - | chr2_2:55370803-55370822 | Msa0258750:intron | 55.0% | |
ACGTTCTCGAGCAAGACGTC+AGG | - | chr2_2:55370900-55370919 | Msa0258750:intron | 55.0% | |
GGATTGTGAAGCGACCGCAA+AGG | + | chr2_2:55371029-55371048 | None:intergenic | 55.0% | |
GTGGAGCTGCTACCAGAAAG+AGG | - | chr2_2:55370803-55370822 | Msa0258750:intron | 55.0% | |
ACGTTCTCGAGCAAGACGTC+AGG | - | chr2_2:55370900-55370919 | Msa0258750:intron | 55.0% | |
GGATTGTGAAGCGACCGCAA+AGG | + | chr2_2:55371029-55371048 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 55370277 | 55371649 | 55370277 | ID=Msa0258750;Name=Msa0258750 |
chr2_2 | mRNA | 55370277 | 55371649 | 55370277 | ID=Msa0258750-mRNA-1;Parent=Msa0258750;Name=Msa0258750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|1|1|4|0|272 |
chr2_2 | exon | 55371005 | 55371649 | 55371005 | ID=Msa0258750-mRNA-1:exon:16730;Parent=Msa0258750-mRNA-1 |
chr2_2 | exon | 55370564 | 55370635 | 55370564 | ID=Msa0258750-mRNA-1:exon:16729;Parent=Msa0258750-mRNA-1 |
chr2_2 | exon | 55370434 | 55370463 | 55370434 | ID=Msa0258750-mRNA-1:exon:16728;Parent=Msa0258750-mRNA-1 |
chr2_2 | exon | 55370277 | 55370348 | 55370277 | ID=Msa0258750-mRNA-1:exon:16727;Parent=Msa0258750-mRNA-1 |
chr2_2 | CDS | 55371005 | 55371649 | 55371005 | ID=Msa0258750-mRNA-1:cds;Parent=Msa0258750-mRNA-1 |
chr2_2 | CDS | 55370564 | 55370635 | 55370564 | ID=Msa0258750-mRNA-1:cds;Parent=Msa0258750-mRNA-1 |
chr2_2 | CDS | 55370434 | 55370463 | 55370434 | ID=Msa0258750-mRNA-1:cds;Parent=Msa0258750-mRNA-1 |
chr2_2 | CDS | 55370277 | 55370348 | 55370277 | ID=Msa0258750-mRNA-1:cds;Parent=Msa0258750-mRNA-1 |
Gene Sequence |
Protein sequence |