Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259780 | XP_039686862.1 | 85.663 | 279 | 34 | 2 | 1 | 277 | 15 | 289 | 4.23e-156 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259780 | sp|Q9T072|BH025_ARATH | 36.530 | 219 | 130 | 4 | 55 | 266 | 105 | 321 | 1.94e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259780 | G7IMC5 | 86.182 | 275 | 32 | 2 | 1 | 273 | 1 | 271 | 1.50e-155 | 444 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0259780 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259780 | MtrunA17_Chr2g0333541 | 86.182 | 275 | 32 | 2 | 1 | 273 | 1 | 271 | 2.89e-159 | 444 |
| Msa0259780 | MtrunA17_Chr8g0368371 | 76.761 | 142 | 17 | 2 | 1 | 127 | 1 | 141 | 3.57e-68 | 208 |
| Msa0259780 | MtrunA17_Chr2g0333621 | 40.940 | 298 | 138 | 10 | 1 | 268 | 20 | 309 | 1.25e-48 | 164 |
| Msa0259780 | MtrunA17_Chr2g0333641 | 38.676 | 287 | 150 | 8 | 4 | 268 | 23 | 305 | 5.29e-46 | 157 |
| Msa0259780 | MtrunA17_Chr8g0336681 | 48.404 | 188 | 88 | 4 | 87 | 266 | 145 | 331 | 8.23e-46 | 157 |
| Msa0259780 | MtrunA17_Chr4g0002801 | 42.273 | 220 | 116 | 4 | 60 | 268 | 109 | 328 | 5.65e-44 | 152 |
| Msa0259780 | MtrunA17_Chr5g0400621 | 46.111 | 180 | 95 | 2 | 91 | 269 | 150 | 328 | 1.32e-42 | 148 |
| Msa0259780 | MtrunA17_Chr4g0054581 | 38.496 | 226 | 127 | 3 | 54 | 269 | 150 | 373 | 2.37e-40 | 144 |
| Msa0259780 | MtrunA17_Chr4g0002781 | 44.444 | 198 | 95 | 5 | 80 | 268 | 156 | 347 | 5.61e-40 | 142 |
| Msa0259780 | MtrunA17_Chr5g0400661 | 38.683 | 243 | 121 | 6 | 54 | 268 | 90 | 332 | 1.04e-39 | 141 |
| Msa0259780 | MtrunA17_Chr4g0033291 | 37.849 | 251 | 126 | 8 | 40 | 268 | 80 | 322 | 1.50e-39 | 140 |
| Msa0259780 | MtrunA17_Chr4g0033391 | 38.710 | 217 | 118 | 5 | 53 | 268 | 112 | 314 | 8.90e-39 | 138 |
| Msa0259780 | MtrunA17_Chr2g0333611 | 42.029 | 207 | 107 | 6 | 65 | 266 | 13 | 211 | 1.09e-38 | 135 |
| Msa0259780 | MtrunA17_Chr2g0307131 | 43.085 | 188 | 92 | 5 | 87 | 266 | 167 | 347 | 4.53e-38 | 137 |
| Msa0259780 | MtrunA17_Chr4g0054561 | 39.891 | 183 | 98 | 4 | 91 | 268 | 148 | 323 | 1.00e-37 | 135 |
| Msa0259780 | MtrunA17_Chr2g0280161 | 41.111 | 180 | 103 | 3 | 89 | 266 | 168 | 346 | 1.70e-37 | 135 |
| Msa0259780 | MtrunA17_Chr7g0249811 | 34.084 | 311 | 143 | 9 | 8 | 266 | 24 | 324 | 2.16e-37 | 135 |
| Msa0259780 | MtrunA17_Chr4g0033281 | 39.394 | 231 | 125 | 5 | 55 | 278 | 106 | 328 | 7.64e-37 | 133 |
| Msa0259780 | MtrunA17_Chr2g0307141 | 42.353 | 170 | 96 | 2 | 98 | 266 | 183 | 351 | 1.39e-36 | 133 |
| Msa0259780 | MtrunA17_Chr4g0054551 | 40.984 | 183 | 96 | 5 | 91 | 268 | 148 | 323 | 2.56e-36 | 132 |
| Msa0259780 | MtrunA17_Chr6g0468491 | 36.596 | 235 | 134 | 5 | 49 | 269 | 75 | 308 | 2.54e-34 | 126 |
| Msa0259780 | MtrunA17_Chr4g0054621 | 32.103 | 271 | 166 | 7 | 9 | 269 | 74 | 336 | 3.96e-33 | 124 |
| Msa0259780 | MtrunA17_Chr7g0225901 | 39.344 | 183 | 95 | 4 | 76 | 250 | 66 | 240 | 1.16e-32 | 120 |
| Msa0259780 | MtrunA17_Chr5g0400641 | 40.120 | 167 | 78 | 3 | 101 | 256 | 1 | 156 | 1.40e-32 | 117 |
| Msa0259780 | MtrunA17_Chr5g0400671 | 37.563 | 197 | 113 | 4 | 78 | 272 | 137 | 325 | 2.18e-32 | 121 |
| Msa0259780 | MtrunA17_Chr4g0049331 | 39.080 | 174 | 104 | 2 | 98 | 270 | 135 | 307 | 2.98e-32 | 120 |
| Msa0259780 | MtrunA17_Chr4g0002831 | 41.143 | 175 | 88 | 8 | 100 | 272 | 45 | 206 | 1.08e-26 | 103 |
| Msa0259780 | MtrunA17_Chr7g0233441 | 36.571 | 175 | 86 | 6 | 103 | 272 | 44 | 198 | 1.82e-25 | 100 |
| Msa0259780 | MtrunA17_Chr4g0002851 | 37.791 | 172 | 86 | 5 | 102 | 272 | 47 | 198 | 5.57e-25 | 99.0 |
| Msa0259780 | MtrunA17_Chr4g0054571 | 37.374 | 198 | 112 | 4 | 82 | 267 | 129 | 326 | 8.09e-25 | 101 |
| Msa0259780 | MtrunA17_Chr6g0468461 | 33.333 | 228 | 123 | 5 | 49 | 262 | 111 | 323 | 9.48e-23 | 95.9 |
| Msa0259780 | MtrunA17_Chr8g0365711 | 26.794 | 209 | 129 | 8 | 58 | 247 | 195 | 398 | 3.30e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259780 | AT4G37850.2 | 36.530 | 219 | 130 | 4 | 55 | 266 | 105 | 321 | 1.97e-35 | 130 |
| Msa0259780 | AT4G37850.1 | 36.530 | 219 | 130 | 4 | 55 | 266 | 105 | 321 | 1.97e-35 | 130 |
| Msa0259780 | AT2G22750.2 | 41.899 | 179 | 100 | 1 | 91 | 265 | 119 | 297 | 1.62e-32 | 122 |
| Msa0259780 | AT2G22750.3 | 41.899 | 179 | 100 | 1 | 91 | 265 | 147 | 325 | 2.60e-32 | 122 |
| Msa0259780 | AT2G22750.5 | 41.899 | 179 | 100 | 1 | 91 | 265 | 143 | 321 | 2.76e-32 | 121 |
| Msa0259780 | AT2G22750.1 | 41.899 | 179 | 99 | 2 | 91 | 265 | 119 | 296 | 5.27e-31 | 117 |
| Msa0259780 | AT2G22750.4 | 41.899 | 179 | 99 | 2 | 91 | 265 | 147 | 324 | 8.11e-31 | 117 |
| Msa0259780 | AT2G22770.1 | 35.484 | 186 | 105 | 3 | 98 | 268 | 132 | 317 | 5.18e-27 | 107 |
| Msa0259780 | AT2G22760.1 | 33.516 | 182 | 117 | 4 | 91 | 268 | 112 | 293 | 1.77e-26 | 105 |
| Msa0259780 | AT2G22760.2 | 34.356 | 163 | 104 | 3 | 91 | 250 | 112 | 274 | 7.13e-24 | 98.2 |
| Msa0259780 | AT4G17880.1 | 25.882 | 170 | 97 | 5 | 84 | 236 | 401 | 558 | 5.78e-14 | 72.0 |
| Msa0259780 | AT5G46760.1 | 25.146 | 171 | 101 | 5 | 84 | 236 | 400 | 561 | 3.01e-13 | 70.1 |
| Msa0259780 | AT4G29930.5 | 26.455 | 189 | 120 | 5 | 68 | 250 | 22 | 197 | 6.06e-13 | 67.4 |
| Msa0259780 | AT4G29930.6 | 25.926 | 189 | 130 | 3 | 68 | 253 | 22 | 203 | 6.93e-13 | 67.0 |
| Msa0259780 | AT4G29930.2 | 26.042 | 192 | 123 | 5 | 68 | 253 | 22 | 200 | 7.70e-13 | 67.0 |
| Msa0259780 | AT5G57150.5 | 24.211 | 190 | 135 | 4 | 70 | 250 | 25 | 214 | 1.38e-11 | 63.2 |
| Msa0259780 | AT4G29930.3 | 24.519 | 208 | 129 | 5 | 68 | 250 | 22 | 226 | 1.66e-11 | 63.5 |
| Msa0259780 | AT4G29930.7 | 24.519 | 208 | 129 | 5 | 68 | 250 | 22 | 226 | 1.66e-11 | 63.5 |
| Msa0259780 | AT4G29930.1 | 24.171 | 211 | 132 | 5 | 68 | 253 | 22 | 229 | 2.35e-11 | 63.2 |
| Msa0259780 | AT5G57150.1 | 25.668 | 187 | 130 | 5 | 70 | 247 | 25 | 211 | 2.73e-11 | 62.8 |
| Msa0259780 | AT4G09820.1 | 30.464 | 151 | 80 | 4 | 86 | 235 | 351 | 477 | 4.15e-11 | 63.5 |
| Msa0259780 | AT5G41315.3 | 27.329 | 161 | 95 | 3 | 90 | 228 | 438 | 598 | 7.50e-11 | 62.8 |
| Msa0259780 | AT5G41315.2 | 27.329 | 161 | 95 | 3 | 90 | 228 | 441 | 601 | 8.23e-11 | 62.8 |
| Msa0259780 | AT5G41315.1 | 27.329 | 161 | 95 | 3 | 90 | 228 | 433 | 593 | 8.27e-11 | 62.8 |
| Msa0259780 | AT1G63650.3 | 28.205 | 156 | 95 | 3 | 90 | 228 | 397 | 552 | 9.07e-11 | 62.4 |
| Msa0259780 | AT1G63650.1 | 28.205 | 156 | 95 | 3 | 90 | 228 | 397 | 552 | 9.07e-11 | 62.4 |
| Msa0259780 | AT1G63650.2 | 28.205 | 156 | 95 | 3 | 90 | 228 | 397 | 552 | 9.07e-11 | 62.4 |
Find 52 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTTGAAGCTAGGGTTCT+TGG | 0.268478 | 2_2:+57130966 | Msa0259780:CDS |
| CAAGACATTGGTACTTGTTA+TGG | 0.311267 | 2_2:-57131075 | None:intergenic |
| ACTAGGCCAGTTGTGGCAAT+AGG | 0.327076 | 2_2:-57130372 | None:intergenic |
| ATTACTTGCCTGGGCAATAA+TGG | 0.348494 | 2_2:-57131123 | None:intergenic |
| AGTACCAATGTCTTGCCATT+TGG | 0.350019 | 2_2:+57131083 | Msa0259780:CDS |
| AAGAGTAGTGGCTACGTTGC+AGG | 0.356620 | 2_2:+57131302 | Msa0259780:CDS |
| CTTCTTCAATCCAGGTATAA+AGG | 0.361311 | 2_2:-57130634 | None:intergenic |
| AAGTAAGATCATAGAACTTT+CGG | 0.375512 | 2_2:+57130611 | Msa0259780:CDS |
| ACATAATGTCGGAGAGGAAT+AGG | 0.390434 | 2_2:+57130574 | Msa0259780:CDS |
| AGGTTGAAGCTAGGGTTCTT+GGG | 0.420139 | 2_2:+57130967 | Msa0259780:CDS |
| ACGACTTGAAGAACGTTTGA+AGG | 0.420593 | 2_2:+57130812 | Msa0259780:CDS |
| GCTTCTTTGAATTCGACCTT+TGG | 0.427412 | 2_2:-57130524 | None:intergenic |
| GAACTTTCGGCCTTTATACC+TGG | 0.434477 | 2_2:+57130624 | Msa0259780:CDS |
| CTAGGCCAGTTGTGGCAATA+GGG | 0.443059 | 2_2:-57130371 | None:intergenic |
| GATCTTGTGGAGTCTGATAC+AGG | 0.452617 | 2_2:-57130338 | None:intergenic |
| CTTTATACCTGGATTGAAGA+AGG | 0.465281 | 2_2:+57130635 | Msa0259780:CDS |
| AGATGGATGAGTTGTTTACT+AGG | 0.471822 | 2_2:-57130389 | None:intergenic |
| ATACTAACCTTCTTCAATCC+AGG | 0.486683 | 2_2:-57130642 | None:intergenic |
| AGTGTCCCTATTGCCACAAC+TGG | 0.491296 | 2_2:+57130366 | Msa0259780:CDS |
| TCATGGTGTTGTTCAATTGT+TGG | 0.495507 | 2_2:-57130471 | None:intergenic |
| TAGAACACGAGATCTTGTTA+TGG | 0.495583 | 2_2:-57130880 | None:intergenic |
| CACTTCTAGAGGTTGAAGCT+AGG | 0.500066 | 2_2:+57130958 | Msa0259780:CDS |
| GACGTTAAGAAGAAAGATGC+AGG | 0.502121 | 2_2:+57130846 | Msa0259780:CDS |
| AATGTCTCAGAAGCGCTTCG+AGG | 0.506140 | 2_2:-57130546 | None:intergenic |
| TGAATAATGTGACACATAGA+TGG | 0.509083 | 2_2:-57130406 | None:intergenic |
| ACTTCTAGAGGTTGAAGCTA+GGG | 0.520330 | 2_2:+57130959 | Msa0259780:CDS |
| ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2_2:-57130488 | None:intergenic |
| AATGGCTGTGTAGATTGATA+AGG | 0.531973 | 2_2:+57130755 | Msa0259780:intron |
| TGACATCACCATTATTGCCC+AGG | 0.532981 | 2_2:+57131115 | Msa0259780:CDS |
| GGTATTGATAATGAGTTGGT+TGG | 0.541397 | 2_2:-57130450 | None:intergenic |
| GTGAAATGAACACTGAAGAA+TGG | 0.542671 | 2_2:+57130925 | Msa0259780:CDS |
| TTTGCCTTTGTCATCATCAA+CGG | 0.545210 | 2_2:+57130497 | Msa0259780:CDS |
| ATTAACAAAGACACTGCAAT+CGG | 0.547823 | 2_2:+57130903 | Msa0259780:CDS |
| ATGTCAAGAGTATTTCCAAA+TGG | 0.548099 | 2_2:-57131098 | None:intergenic |
| TGTTAATCAAGATTCATTGT+GGG | 0.549660 | 2_2:+57130997 | Msa0259780:CDS |
| TGAAGCTAGGGTTCTTGGGA+AGG | 0.552443 | 2_2:+57130971 | Msa0259780:CDS |
| TGTTGGTATTGATAATGAGT+TGG | 0.562767 | 2_2:-57130454 | None:intergenic |
| ATTTCCAAATGGCAAGACAT+TGG | 0.571967 | 2_2:-57131087 | None:intergenic |
| TGATAAGGTTCATGTGGTAA+CGG | 0.571985 | 2_2:+57130770 | Msa0259780:CDS |
| GTGTTAATCAAGATTCATTG+TGG | 0.578908 | 2_2:+57130996 | Msa0259780:CDS |
| GACATTAGATCACATAATGT+CGG | 0.591474 | 2_2:+57130563 | Msa0259780:CDS |
| GCGAAATGAATCACTTCTAG+AGG | 0.597091 | 2_2:+57130947 | Msa0259780:CDS |
| GGGACACTGAATTGATCTTG+TGG | 0.603401 | 2_2:-57130351 | None:intergenic |
| GTTGTTTACTAGGCCAGTTG+TGG | 0.626590 | 2_2:-57130379 | None:intergenic |
| GTGGCTACGTTGCAGGCATG+TGG | 0.637942 | 2_2:+57131309 | Msa0259780:CDS |
| TAAATACAAGTTGACCGTGA+AGG | 0.652018 | 2_2:+57131263 | Msa0259780:CDS |
| CATCATCAACGGATAACCAA+AGG | 0.659236 | 2_2:+57130508 | Msa0259780:CDS |
| TTATCCGTTGATGATGACAA+AGG | 0.681037 | 2_2:-57130501 | None:intergenic |
| TAGATCACATAATGTCGGAG+AGG | 0.685140 | 2_2:+57130568 | Msa0259780:CDS |
| TGGGATGCAAGAAGAGATTG+TGG | 0.685234 | 2_2:+57131016 | Msa0259780:CDS |
| GTAGATTGATAAGGTTCATG+TGG | 0.700450 | 2_2:+57130764 | Msa0259780:intron |
| TCTGATACAGGATATCTCTG+AGG | 0.706562 | 2_2:-57130326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATAAATT+TGG | - | chr2_2:57131228-57131247 | None:intergenic | 0.0% |
| !! | TATATATATATATATAAATT+TGG | - | chr2_2:57131228-57131247 | None:intergenic | 0.0% |
| !! | AATATATATTATATTAAACC+TGG | + | chr2_2:57130667-57130686 | Msa0259780:intron | 10.0% |
| !! | AATATATATTATATTAAACC+TGG | + | chr2_2:57130667-57130686 | Msa0259780:intron | 10.0% |
| !!! | ATTTTTATAGTAGTTATCAT+TGG | + | chr2_2:57130702-57130721 | Msa0259780:intron | 15.0% |
| !! | CTACAATAAAAATTATCTAA+TGG | + | chr2_2:57130737-57130756 | Msa0259780:intron | 15.0% |
| !! | TATATATATATATACACAGA+TGG | + | chr2_2:57131236-57131255 | Msa0259780:intron | 15.0% |
| !! | ATATATATATATACACAGAT+GGG | + | chr2_2:57131237-57131256 | Msa0259780:intron | 15.0% |
| !!! | ATTTTTATAGTAGTTATCAT+TGG | + | chr2_2:57130702-57130721 | Msa0259780:intron | 15.0% |
| !! | CTACAATAAAAATTATCTAA+TGG | + | chr2_2:57130737-57130756 | Msa0259780:intron | 15.0% |
| !! | TATATATATATATACACAGA+TGG | + | chr2_2:57131236-57131255 | Msa0259780:intron | 15.0% |
| !! | ATATATATATATACACAGAT+GGG | + | chr2_2:57131237-57131256 | Msa0259780:intron | 15.0% |
| ! | AAGTAAGATCATAGAACTTT+CGG | + | chr2_2:57130611-57130630 | Msa0259780:CDS | 25.0% |
| ! | AAAAATTTACTCATTCATCC+AGG | - | chr2_2:57130688-57130707 | None:intergenic | 25.0% |
| ! | TGTTAATCAAGATTCATTGT+GGG | + | chr2_2:57130997-57131016 | Msa0259780:CDS | 25.0% |
| ! | AAATCCAAATTGATTAGCAA+TGG | - | chr2_2:57131394-57131413 | None:intergenic | 25.0% |
| !! | TGCTAATCAATTTGGATTTT+TGG | + | chr2_2:57131395-57131414 | Msa0259780:intron | 25.0% |
| ! | AAGTAAGATCATAGAACTTT+CGG | + | chr2_2:57130611-57130630 | Msa0259780:CDS | 25.0% |
| ! | AAAAATTTACTCATTCATCC+AGG | - | chr2_2:57130688-57130707 | None:intergenic | 25.0% |
| ! | TGTTAATCAAGATTCATTGT+GGG | + | chr2_2:57130997-57131016 | Msa0259780:CDS | 25.0% |
| ! | AAATCCAAATTGATTAGCAA+TGG | - | chr2_2:57131394-57131413 | None:intergenic | 25.0% |
| !! | TGCTAATCAATTTGGATTTT+TGG | + | chr2_2:57131395-57131414 | Msa0259780:intron | 25.0% |
| TGAATAATGTGACACATAGA+TGG | - | chr2_2:57130409-57130428 | None:intergenic | 30.0% | |
| !! | TGTTGGTATTGATAATGAGT+TGG | - | chr2_2:57130457-57130476 | None:intergenic | 30.0% |
| GACATTAGATCACATAATGT+CGG | + | chr2_2:57130563-57130582 | Msa0259780:CDS | 30.0% | |
| ATTAACAAAGACACTGCAAT+CGG | + | chr2_2:57130903-57130922 | Msa0259780:CDS | 30.0% | |
| GTGTTAATCAAGATTCATTG+TGG | + | chr2_2:57130996-57131015 | Msa0259780:CDS | 30.0% | |
| !! | ATGTCAAGAGTATTTCCAAA+TGG | - | chr2_2:57131101-57131120 | None:intergenic | 30.0% |
| !! | TTTTTGGTAATTACTTGCCT+GGG | - | chr2_2:57131135-57131154 | None:intergenic | 30.0% |
| !!! | TTTTTTGGTAATTACTTGCC+TGG | - | chr2_2:57131136-57131155 | None:intergenic | 30.0% |
| TGGAAGAAATTTAAGAAGCA+TGG | + | chr2_2:57131178-57131197 | Msa0259780:intron | 30.0% | |
| !!! | ACTACTCTTAGTTTTTTCAC+TGG | - | chr2_2:57131291-57131310 | None:intergenic | 30.0% |
| AGTGAAAAAACTAAGAGTAG+TGG | + | chr2_2:57131290-57131309 | Msa0259780:CDS | 30.0% | |
| TGAAGTGTGCATTTAGTATT+TGG | + | chr2_2:57131345-57131364 | Msa0259780:intron | 30.0% | |
| GAAGTGTGCATTTAGTATTT+GGG | + | chr2_2:57131346-57131365 | Msa0259780:intron | 30.0% | |
| ! | TTAGTATTTGGGATTTGAGA+AGG | + | chr2_2:57131357-57131376 | Msa0259780:intron | 30.0% |
| AAAGCCATTGCTAATCAATT+TGG | + | chr2_2:57131387-57131406 | Msa0259780:intron | 30.0% | |
| TGAATAATGTGACACATAGA+TGG | - | chr2_2:57130409-57130428 | None:intergenic | 30.0% | |
| !! | TGTTGGTATTGATAATGAGT+TGG | - | chr2_2:57130457-57130476 | None:intergenic | 30.0% |
| GACATTAGATCACATAATGT+CGG | + | chr2_2:57130563-57130582 | Msa0259780:CDS | 30.0% | |
| ATTAACAAAGACACTGCAAT+CGG | + | chr2_2:57130903-57130922 | Msa0259780:CDS | 30.0% | |
| GTGTTAATCAAGATTCATTG+TGG | + | chr2_2:57130996-57131015 | Msa0259780:CDS | 30.0% | |
| !! | ATGTCAAGAGTATTTCCAAA+TGG | - | chr2_2:57131101-57131120 | None:intergenic | 30.0% |
| !! | TTTTTGGTAATTACTTGCCT+GGG | - | chr2_2:57131135-57131154 | None:intergenic | 30.0% |
| !!! | TTTTTTGGTAATTACTTGCC+TGG | - | chr2_2:57131136-57131155 | None:intergenic | 30.0% |
| TGGAAGAAATTTAAGAAGCA+TGG | + | chr2_2:57131178-57131197 | Msa0259780:intron | 30.0% | |
| !!! | ACTACTCTTAGTTTTTTCAC+TGG | - | chr2_2:57131291-57131310 | None:intergenic | 30.0% |
| AGTGAAAAAACTAAGAGTAG+TGG | + | chr2_2:57131290-57131309 | Msa0259780:CDS | 30.0% | |
| TGAAGTGTGCATTTAGTATT+TGG | + | chr2_2:57131345-57131364 | Msa0259780:intron | 30.0% | |
| GAAGTGTGCATTTAGTATTT+GGG | + | chr2_2:57131346-57131365 | Msa0259780:intron | 30.0% | |
| ! | TTAGTATTTGGGATTTGAGA+AGG | + | chr2_2:57131357-57131376 | Msa0259780:intron | 30.0% |
| AAAGCCATTGCTAATCAATT+TGG | + | chr2_2:57131387-57131406 | Msa0259780:intron | 30.0% | |
| AGATGGATGAGTTGTTTACT+AGG | - | chr2_2:57130392-57130411 | None:intergenic | 35.0% | |
| !! | GGTATTGATAATGAGTTGGT+TGG | - | chr2_2:57130453-57130472 | None:intergenic | 35.0% |
| !! | TCATGGTGTTGTTCAATTGT+TGG | - | chr2_2:57130474-57130493 | None:intergenic | 35.0% |
| ATGACAAAGGCAAAGAATCA+TGG | - | chr2_2:57130491-57130510 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+CGG | + | chr2_2:57130497-57130516 | Msa0259780:CDS | 35.0% | |
| !! | TTATCCGTTGATGATGACAA+AGG | - | chr2_2:57130504-57130523 | None:intergenic | 35.0% |
| CTTCTTCAATCCAGGTATAA+AGG | - | chr2_2:57130637-57130656 | None:intergenic | 35.0% | |
| CTTTATACCTGGATTGAAGA+AGG | + | chr2_2:57130635-57130654 | Msa0259780:CDS | 35.0% | |
| ATACTAACCTTCTTCAATCC+AGG | - | chr2_2:57130645-57130664 | None:intergenic | 35.0% | |
| AATGGCTGTGTAGATTGATA+AGG | + | chr2_2:57130755-57130774 | Msa0259780:intron | 35.0% | |
| GTAGATTGATAAGGTTCATG+TGG | + | chr2_2:57130764-57130783 | Msa0259780:intron | 35.0% | |
| TGATAAGGTTCATGTGGTAA+CGG | + | chr2_2:57130770-57130789 | Msa0259780:CDS | 35.0% | |
| TAGAACACGAGATCTTGTTA+TGG | - | chr2_2:57130883-57130902 | None:intergenic | 35.0% | |
| GTGAAATGAACACTGAAGAA+TGG | + | chr2_2:57130925-57130944 | Msa0259780:CDS | 35.0% | |
| ! | CAAGACATTGGTACTTGTTA+TGG | - | chr2_2:57131078-57131097 | None:intergenic | 35.0% |
| ATTTCCAAATGGCAAGACAT+TGG | - | chr2_2:57131090-57131109 | None:intergenic | 35.0% | |
| ! | TAAATACAAGTTGACCGTGA+AGG | + | chr2_2:57131263-57131282 | Msa0259780:CDS | 35.0% |
| !!! | TTTTTTCACTGGTTCCTTCA+CGG | - | chr2_2:57131280-57131299 | None:intergenic | 35.0% |
| !!! | AATTTGGATTTTTGGTGTGC+AGG | + | chr2_2:57131403-57131422 | Msa0259780:intron | 35.0% |
| AGATGGATGAGTTGTTTACT+AGG | - | chr2_2:57130392-57130411 | None:intergenic | 35.0% | |
| !! | GGTATTGATAATGAGTTGGT+TGG | - | chr2_2:57130453-57130472 | None:intergenic | 35.0% |
| !! | TCATGGTGTTGTTCAATTGT+TGG | - | chr2_2:57130474-57130493 | None:intergenic | 35.0% |
| ATGACAAAGGCAAAGAATCA+TGG | - | chr2_2:57130491-57130510 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+CGG | + | chr2_2:57130497-57130516 | Msa0259780:CDS | 35.0% | |
| !! | TTATCCGTTGATGATGACAA+AGG | - | chr2_2:57130504-57130523 | None:intergenic | 35.0% |
| CTTCTTCAATCCAGGTATAA+AGG | - | chr2_2:57130637-57130656 | None:intergenic | 35.0% | |
| CTTTATACCTGGATTGAAGA+AGG | + | chr2_2:57130635-57130654 | Msa0259780:CDS | 35.0% | |
| ATACTAACCTTCTTCAATCC+AGG | - | chr2_2:57130645-57130664 | None:intergenic | 35.0% | |
| AATGGCTGTGTAGATTGATA+AGG | + | chr2_2:57130755-57130774 | Msa0259780:intron | 35.0% | |
| GTAGATTGATAAGGTTCATG+TGG | + | chr2_2:57130764-57130783 | Msa0259780:intron | 35.0% | |
| TGATAAGGTTCATGTGGTAA+CGG | + | chr2_2:57130770-57130789 | Msa0259780:CDS | 35.0% | |
| TAGAACACGAGATCTTGTTA+TGG | - | chr2_2:57130883-57130902 | None:intergenic | 35.0% | |
| GTGAAATGAACACTGAAGAA+TGG | + | chr2_2:57130925-57130944 | Msa0259780:CDS | 35.0% | |
| ! | CAAGACATTGGTACTTGTTA+TGG | - | chr2_2:57131078-57131097 | None:intergenic | 35.0% |
| ATTTCCAAATGGCAAGACAT+TGG | - | chr2_2:57131090-57131109 | None:intergenic | 35.0% | |
| ! | TAAATACAAGTTGACCGTGA+AGG | + | chr2_2:57131263-57131282 | Msa0259780:CDS | 35.0% |
| !!! | TTTTTTCACTGGTTCCTTCA+CGG | - | chr2_2:57131280-57131299 | None:intergenic | 35.0% |
| !!! | AATTTGGATTTTTGGTGTGC+AGG | + | chr2_2:57131403-57131422 | Msa0259780:intron | 35.0% |
| TCTGATACAGGATATCTCTG+AGG | - | chr2_2:57130329-57130348 | None:intergenic | 40.0% | |
| CATCATCAACGGATAACCAA+AGG | + | chr2_2:57130508-57130527 | Msa0259780:CDS | 40.0% | |
| GCTTCTTTGAATTCGACCTT+TGG | - | chr2_2:57130527-57130546 | None:intergenic | 40.0% | |
| TAGATCACATAATGTCGGAG+AGG | + | chr2_2:57130568-57130587 | Msa0259780:CDS | 40.0% | |
| ACATAATGTCGGAGAGGAAT+AGG | + | chr2_2:57130574-57130593 | Msa0259780:CDS | 40.0% | |
| ACGACTTGAAGAACGTTTGA+AGG | + | chr2_2:57130812-57130831 | Msa0259780:CDS | 40.0% | |
| GACGTTAAGAAGAAAGATGC+AGG | + | chr2_2:57130846-57130865 | Msa0259780:CDS | 40.0% | |
| GCGAAATGAATCACTTCTAG+AGG | + | chr2_2:57130947-57130966 | Msa0259780:CDS | 40.0% | |
| ! | ACTTCTAGAGGTTGAAGCTA+GGG | + | chr2_2:57130959-57130978 | Msa0259780:CDS | 40.0% |
| AGTACCAATGTCTTGCCATT+TGG | + | chr2_2:57131083-57131102 | Msa0259780:CDS | 40.0% | |
| ATTACTTGCCTGGGCAATAA+TGG | - | chr2_2:57131126-57131145 | None:intergenic | 40.0% | |
| !!! | GATTTTTGGTGTGCAGGTTT+AGG | + | chr2_2:57131409-57131428 | Msa0259780:intron | 40.0% |
| TCTGATACAGGATATCTCTG+AGG | - | chr2_2:57130329-57130348 | None:intergenic | 40.0% | |
| CATCATCAACGGATAACCAA+AGG | + | chr2_2:57130508-57130527 | Msa0259780:CDS | 40.0% | |
| GCTTCTTTGAATTCGACCTT+TGG | - | chr2_2:57130527-57130546 | None:intergenic | 40.0% | |
| TAGATCACATAATGTCGGAG+AGG | + | chr2_2:57130568-57130587 | Msa0259780:CDS | 40.0% | |
| ACATAATGTCGGAGAGGAAT+AGG | + | chr2_2:57130574-57130593 | Msa0259780:CDS | 40.0% | |
| ACGACTTGAAGAACGTTTGA+AGG | + | chr2_2:57130812-57130831 | Msa0259780:CDS | 40.0% | |
| GACGTTAAGAAGAAAGATGC+AGG | + | chr2_2:57130846-57130865 | Msa0259780:CDS | 40.0% | |
| GCGAAATGAATCACTTCTAG+AGG | + | chr2_2:57130947-57130966 | Msa0259780:CDS | 40.0% | |
| ! | ACTTCTAGAGGTTGAAGCTA+GGG | + | chr2_2:57130959-57130978 | Msa0259780:CDS | 40.0% |
| AGTACCAATGTCTTGCCATT+TGG | + | chr2_2:57131083-57131102 | Msa0259780:CDS | 40.0% | |
| ATTACTTGCCTGGGCAATAA+TGG | - | chr2_2:57131126-57131145 | None:intergenic | 40.0% | |
| !!! | GATTTTTGGTGTGCAGGTTT+AGG | + | chr2_2:57131409-57131428 | Msa0259780:intron | 40.0% |
| GATCTTGTGGAGTCTGATAC+AGG | - | chr2_2:57130341-57130360 | None:intergenic | 45.0% | |
| GGGACACTGAATTGATCTTG+TGG | - | chr2_2:57130354-57130373 | None:intergenic | 45.0% | |
| GTTGTTTACTAGGCCAGTTG+TGG | - | chr2_2:57130382-57130401 | None:intergenic | 45.0% | |
| GAACTTTCGGCCTTTATACC+TGG | + | chr2_2:57130624-57130643 | Msa0259780:CDS | 45.0% | |
| ! | CACTTCTAGAGGTTGAAGCT+AGG | + | chr2_2:57130958-57130977 | Msa0259780:CDS | 45.0% |
| AGGTTGAAGCTAGGGTTCTT+GGG | + | chr2_2:57130967-57130986 | Msa0259780:CDS | 45.0% | |
| TGGGATGCAAGAAGAGATTG+TGG | + | chr2_2:57131016-57131035 | Msa0259780:CDS | 45.0% | |
| TGACATCACCATTATTGCCC+AGG | + | chr2_2:57131115-57131134 | Msa0259780:CDS | 45.0% | |
| GATCTTGTGGAGTCTGATAC+AGG | - | chr2_2:57130341-57130360 | None:intergenic | 45.0% | |
| GGGACACTGAATTGATCTTG+TGG | - | chr2_2:57130354-57130373 | None:intergenic | 45.0% | |
| GTTGTTTACTAGGCCAGTTG+TGG | - | chr2_2:57130382-57130401 | None:intergenic | 45.0% | |
| GAACTTTCGGCCTTTATACC+TGG | + | chr2_2:57130624-57130643 | Msa0259780:CDS | 45.0% | |
| ! | CACTTCTAGAGGTTGAAGCT+AGG | + | chr2_2:57130958-57130977 | Msa0259780:CDS | 45.0% |
| AGGTTGAAGCTAGGGTTCTT+GGG | + | chr2_2:57130967-57130986 | Msa0259780:CDS | 45.0% | |
| TGGGATGCAAGAAGAGATTG+TGG | + | chr2_2:57131016-57131035 | Msa0259780:CDS | 45.0% | |
| TGACATCACCATTATTGCCC+AGG | + | chr2_2:57131115-57131134 | Msa0259780:CDS | 45.0% | |
| !!! | ATATATATATTATAGTTTTT+TGG | - | chr2_2:57131151-57131170 | None:intergenic | 5.0% |
| !! | ATAATATATATATAATTTCA+TGG | + | chr2_2:57131158-57131177 | Msa0259780:intron | 5.0% |
| !!! | ATATATATATTATAGTTTTT+TGG | - | chr2_2:57131151-57131170 | None:intergenic | 5.0% |
| !! | ATAATATATATATAATTTCA+TGG | + | chr2_2:57131158-57131177 | Msa0259780:intron | 5.0% |
| AGTGTCCCTATTGCCACAAC+TGG | + | chr2_2:57130366-57130385 | Msa0259780:CDS | 50.0% | |
| CTAGGCCAGTTGTGGCAATA+GGG | - | chr2_2:57130374-57130393 | None:intergenic | 50.0% | |
| ACTAGGCCAGTTGTGGCAAT+AGG | - | chr2_2:57130375-57130394 | None:intergenic | 50.0% | |
| !! | AATGTCTCAGAAGCGCTTCG+AGG | - | chr2_2:57130549-57130568 | None:intergenic | 50.0% |
| GAGGTTGAAGCTAGGGTTCT+TGG | + | chr2_2:57130966-57130985 | Msa0259780:CDS | 50.0% | |
| TGAAGCTAGGGTTCTTGGGA+AGG | + | chr2_2:57130971-57130990 | Msa0259780:CDS | 50.0% | |
| AAGAGTAGTGGCTACGTTGC+AGG | + | chr2_2:57131302-57131321 | Msa0259780:CDS | 50.0% | |
| AGTGTCCCTATTGCCACAAC+TGG | + | chr2_2:57130366-57130385 | Msa0259780:CDS | 50.0% | |
| CTAGGCCAGTTGTGGCAATA+GGG | - | chr2_2:57130374-57130393 | None:intergenic | 50.0% | |
| ACTAGGCCAGTTGTGGCAAT+AGG | - | chr2_2:57130375-57130394 | None:intergenic | 50.0% | |
| !! | AATGTCTCAGAAGCGCTTCG+AGG | - | chr2_2:57130549-57130568 | None:intergenic | 50.0% |
| GAGGTTGAAGCTAGGGTTCT+TGG | + | chr2_2:57130966-57130985 | Msa0259780:CDS | 50.0% | |
| TGAAGCTAGGGTTCTTGGGA+AGG | + | chr2_2:57130971-57130990 | Msa0259780:CDS | 50.0% | |
| AAGAGTAGTGGCTACGTTGC+AGG | + | chr2_2:57131302-57131321 | Msa0259780:CDS | 50.0% | |
| GTGGCTACGTTGCAGGCATG+TGG | + | chr2_2:57131309-57131328 | Msa0259780:CDS | 60.0% | |
| GTGGCTACGTTGCAGGCATG+TGG | + | chr2_2:57131309-57131328 | Msa0259780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57130279 | 57131447 | 57130279 | ID=Msa0259780;Name=Msa0259780 |
| chr2_2 | mRNA | 57130279 | 57131447 | 57130279 | ID=Msa0259780-mRNA-1;Parent=Msa0259780;Name=Msa0259780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|1|1|4|0|281 |
| chr2_2 | exon | 57130279 | 57130656 | 57130279 | ID=Msa0259780-mRNA-1:exon:17309;Parent=Msa0259780-mRNA-1 |
| chr2_2 | exon | 57130768 | 57131136 | 57130768 | ID=Msa0259780-mRNA-1:exon:17310;Parent=Msa0259780-mRNA-1 |
| chr2_2 | exon | 57131255 | 57131330 | 57131255 | ID=Msa0259780-mRNA-1:exon:17311;Parent=Msa0259780-mRNA-1 |
| chr2_2 | exon | 57131425 | 57131447 | 57131425 | ID=Msa0259780-mRNA-1:exon:17312;Parent=Msa0259780-mRNA-1 |
| chr2_2 | CDS | 57130279 | 57130656 | 57130279 | ID=Msa0259780-mRNA-1:cds;Parent=Msa0259780-mRNA-1 |
| chr2_2 | CDS | 57130768 | 57131136 | 57130768 | ID=Msa0259780-mRNA-1:cds;Parent=Msa0259780-mRNA-1 |
| chr2_2 | CDS | 57131255 | 57131330 | 57131255 | ID=Msa0259780-mRNA-1:cds;Parent=Msa0259780-mRNA-1 |
| chr2_2 | CDS | 57131425 | 57131447 | 57131425 | ID=Msa0259780-mRNA-1:cds;Parent=Msa0259780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
