Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259790 | XP_039685450.1 | 71.704 | 311 | 66 | 5 | 1 | 291 | 1 | 309 | 6.64e-148 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259790 | sp|Q9T072|BH025_ARATH | 38.144 | 194 | 100 | 5 | 104 | 278 | 129 | 321 | 1.76e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259790 | G7IMB7 | 69.153 | 295 | 11 | 6 | 14 | 291 | 1 | 232 | 1.07e-124 | 364 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0259790 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259790 | MtrunA17_Chr2g0333541 | 62.799 | 293 | 75 | 5 | 15 | 290 | 1 | 276 | 2.41e-106 | 310 |
| Msa0259790 | MtrunA17_Chr8g0368371 | 80.282 | 142 | 23 | 3 | 15 | 153 | 1 | 140 | 2.97e-72 | 219 |
| Msa0259790 | MtrunA17_Chr2g0333621 | 37.460 | 315 | 153 | 9 | 3 | 280 | 2 | 309 | 4.24e-48 | 162 |
| Msa0259790 | MtrunA17_Chr4g0002801 | 34.731 | 334 | 158 | 13 | 1 | 280 | 1 | 328 | 6.23e-43 | 149 |
| Msa0259790 | MtrunA17_Chr2g0333641 | 36.709 | 316 | 150 | 13 | 3 | 280 | 2 | 305 | 1.71e-41 | 145 |
| Msa0259790 | MtrunA17_Chr8g0336681 | 39.316 | 234 | 111 | 5 | 76 | 278 | 98 | 331 | 7.90e-40 | 142 |
| Msa0259790 | MtrunA17_Chr4g0002781 | 37.021 | 235 | 116 | 6 | 76 | 280 | 115 | 347 | 7.35e-36 | 131 |
| Msa0259790 | MtrunA17_Chr5g0400621 | 37.447 | 235 | 106 | 7 | 80 | 281 | 102 | 328 | 8.32e-34 | 125 |
| Msa0259790 | MtrunA17_Chr5g0400661 | 38.071 | 197 | 91 | 5 | 114 | 280 | 137 | 332 | 7.02e-33 | 123 |
| Msa0259790 | MtrunA17_Chr7g0249811 | 32.335 | 334 | 157 | 10 | 3 | 278 | 2 | 324 | 1.36e-29 | 114 |
| Msa0259790 | MtrunA17_Chr5g0400641 | 38.608 | 158 | 89 | 3 | 128 | 284 | 1 | 151 | 1.52e-29 | 110 |
| Msa0259790 | MtrunA17_Chr4g0054561 | 36.216 | 185 | 87 | 5 | 118 | 280 | 148 | 323 | 2.03e-29 | 114 |
| Msa0259790 | MtrunA17_Chr2g0280161 | 35.795 | 176 | 93 | 3 | 121 | 278 | 173 | 346 | 2.65e-29 | 114 |
| Msa0259790 | MtrunA17_Chr5g0400671 | 35.714 | 196 | 100 | 3 | 108 | 284 | 137 | 325 | 3.08e-29 | 113 |
| Msa0259790 | MtrunA17_Chr4g0049331 | 37.500 | 176 | 89 | 4 | 125 | 282 | 135 | 307 | 8.05e-29 | 112 |
| Msa0259790 | MtrunA17_Chr4g0054571 | 28.165 | 316 | 174 | 9 | 1 | 279 | 27 | 326 | 8.92e-29 | 112 |
| Msa0259790 | MtrunA17_Chr2g0333611 | 36.869 | 198 | 86 | 6 | 107 | 278 | 27 | 211 | 1.16e-28 | 109 |
| Msa0259790 | MtrunA17_Chr4g0054581 | 35.821 | 201 | 109 | 6 | 101 | 281 | 173 | 373 | 2.65e-27 | 109 |
| Msa0259790 | MtrunA17_Chr4g0033391 | 32.218 | 239 | 128 | 7 | 58 | 280 | 94 | 314 | 1.67e-26 | 106 |
| Msa0259790 | MtrunA17_Chr4g0033291 | 30.375 | 293 | 169 | 8 | 4 | 280 | 49 | 322 | 5.85e-26 | 104 |
| Msa0259790 | MtrunA17_Chr4g0033281 | 27.439 | 328 | 175 | 8 | 1 | 281 | 9 | 320 | 7.36e-26 | 104 |
| Msa0259790 | MtrunA17_Chr2g0307131 | 33.690 | 187 | 102 | 4 | 110 | 278 | 165 | 347 | 1.34e-25 | 104 |
| Msa0259790 | MtrunA17_Chr2g0307141 | 34.884 | 172 | 91 | 3 | 125 | 278 | 183 | 351 | 2.38e-25 | 103 |
| Msa0259790 | MtrunA17_Chr4g0054551 | 33.514 | 185 | 92 | 5 | 118 | 280 | 148 | 323 | 2.35e-24 | 100 |
| Msa0259790 | MtrunA17_Chr6g0468491 | 30.872 | 298 | 162 | 14 | 17 | 281 | 22 | 308 | 1.02e-23 | 98.2 |
| Msa0259790 | MtrunA17_Chr7g0225901 | 36.242 | 149 | 88 | 3 | 113 | 258 | 76 | 220 | 1.36e-23 | 96.7 |
| Msa0259790 | MtrunA17_Chr4g0054621 | 29.493 | 217 | 115 | 6 | 90 | 281 | 133 | 336 | 8.05e-20 | 87.8 |
| Msa0259790 | MtrunA17_Chr4g0002831 | 35.057 | 174 | 84 | 6 | 128 | 284 | 45 | 206 | 1.01e-18 | 82.4 |
| Msa0259790 | MtrunA17_Chr4g0002851 | 33.140 | 172 | 79 | 4 | 129 | 284 | 47 | 198 | 1.65e-17 | 79.0 |
| Msa0259790 | MtrunA17_Chr7g0233441 | 30.233 | 172 | 89 | 4 | 129 | 284 | 42 | 198 | 3.75e-17 | 78.2 |
| Msa0259790 | MtrunA17_Chr6g0468461 | 34.375 | 160 | 85 | 4 | 101 | 257 | 148 | 290 | 8.32e-17 | 79.7 |
| Msa0259790 | MtrunA17_Chr5g0411341 | 23.952 | 167 | 112 | 2 | 110 | 261 | 478 | 644 | 6.88e-13 | 68.9 |
| Msa0259790 | MtrunA17_Chr8g0346161 | 22.564 | 195 | 137 | 4 | 89 | 277 | 257 | 443 | 2.31e-12 | 67.0 |
| Msa0259790 | MtrunA17_Chr8g0365711 | 26.923 | 234 | 133 | 9 | 56 | 262 | 163 | 385 | 1.53e-11 | 64.3 |
| Msa0259790 | MtrunA17_Chr7g0275821 | 26.761 | 142 | 95 | 3 | 122 | 263 | 249 | 381 | 3.05e-11 | 63.5 |
| Msa0259790 | MtrunA17_Chr8g0366751 | 25.595 | 168 | 84 | 6 | 122 | 261 | 459 | 613 | 9.82e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259790 | AT4G37850.2 | 38.144 | 194 | 100 | 5 | 104 | 278 | 129 | 321 | 1.79e-30 | 117 |
| Msa0259790 | AT4G37850.1 | 38.144 | 194 | 100 | 5 | 104 | 278 | 129 | 321 | 1.79e-30 | 117 |
| Msa0259790 | AT2G22750.1 | 41.899 | 179 | 86 | 4 | 117 | 277 | 118 | 296 | 1.54e-26 | 106 |
| Msa0259790 | AT2G22750.2 | 47.333 | 150 | 75 | 3 | 117 | 262 | 118 | 267 | 1.69e-26 | 106 |
| Msa0259790 | AT2G22750.4 | 40.782 | 179 | 88 | 3 | 117 | 277 | 146 | 324 | 2.05e-26 | 106 |
| Msa0259790 | AT2G22750.3 | 46.000 | 150 | 77 | 2 | 117 | 262 | 146 | 295 | 2.55e-26 | 106 |
| Msa0259790 | AT2G22750.5 | 46.000 | 150 | 77 | 2 | 117 | 262 | 142 | 291 | 2.63e-26 | 105 |
| Msa0259790 | AT2G22760.1 | 28.959 | 221 | 136 | 6 | 80 | 280 | 74 | 293 | 1.39e-21 | 92.4 |
| Msa0259790 | AT2G22770.1 | 32.432 | 185 | 95 | 4 | 125 | 279 | 132 | 316 | 9.03e-21 | 90.9 |
| Msa0259790 | AT2G22760.2 | 28.729 | 181 | 125 | 2 | 80 | 257 | 74 | 253 | 2.61e-20 | 89.0 |
| Msa0259790 | AT4G09820.1 | 32.886 | 149 | 75 | 4 | 113 | 260 | 351 | 475 | 1.84e-14 | 73.9 |
| Msa0259790 | AT4G17880.1 | 26.471 | 204 | 118 | 7 | 80 | 261 | 363 | 556 | 2.25e-14 | 73.6 |
| Msa0259790 | AT5G57150.5 | 25.397 | 189 | 131 | 4 | 83 | 262 | 12 | 199 | 3.52e-14 | 70.9 |
| Msa0259790 | AT5G57150.1 | 25.397 | 189 | 131 | 4 | 83 | 262 | 12 | 199 | 6.07e-14 | 70.5 |
| Msa0259790 | AT5G46760.1 | 26.250 | 160 | 110 | 2 | 110 | 261 | 400 | 559 | 6.41e-14 | 72.4 |
| Msa0259790 | AT4G29930.6 | 27.807 | 187 | 118 | 6 | 83 | 263 | 11 | 186 | 6.89e-14 | 70.1 |
| Msa0259790 | AT1G32640.1 | 28.105 | 153 | 103 | 3 | 115 | 261 | 442 | 593 | 7.00e-14 | 72.0 |
| Msa0259790 | AT4G29930.2 | 27.273 | 187 | 116 | 5 | 83 | 263 | 11 | 183 | 3.00e-13 | 68.2 |
| Msa0259790 | AT4G29930.1 | 25.000 | 204 | 128 | 7 | 83 | 263 | 11 | 212 | 3.38e-13 | 68.6 |
| Msa0259790 | AT4G29930.3 | 25.000 | 204 | 128 | 7 | 83 | 263 | 11 | 212 | 4.81e-13 | 68.2 |
| Msa0259790 | AT4G29930.7 | 25.000 | 204 | 128 | 7 | 83 | 263 | 11 | 212 | 4.81e-13 | 68.2 |
| Msa0259790 | AT4G29930.5 | 27.273 | 187 | 116 | 5 | 83 | 263 | 11 | 183 | 4.89e-13 | 67.8 |
| Msa0259790 | AT5G57150.3 | 25.424 | 177 | 122 | 4 | 95 | 262 | 25 | 200 | 8.32e-13 | 66.6 |
| Msa0259790 | AT5G57150.2 | 25.424 | 177 | 122 | 4 | 95 | 262 | 25 | 200 | 9.95e-13 | 66.6 |
| Msa0259790 | AT5G57150.4 | 25.424 | 177 | 122 | 4 | 95 | 262 | 25 | 200 | 1.82e-12 | 66.6 |
| Msa0259790 | AT1G63650.3 | 29.139 | 151 | 90 | 2 | 122 | 255 | 402 | 552 | 2.08e-11 | 64.7 |
| Msa0259790 | AT1G63650.1 | 29.139 | 151 | 90 | 2 | 122 | 255 | 402 | 552 | 2.08e-11 | 64.7 |
| Msa0259790 | AT1G63650.2 | 29.139 | 151 | 90 | 2 | 122 | 255 | 402 | 552 | 2.08e-11 | 64.7 |
| Msa0259790 | AT2G46510.1 | 28.800 | 125 | 70 | 3 | 110 | 234 | 380 | 485 | 2.53e-11 | 64.3 |
| Msa0259790 | AT5G41315.3 | 28.025 | 157 | 89 | 5 | 122 | 255 | 443 | 598 | 7.19e-11 | 63.2 |
| Msa0259790 | AT5G41315.1 | 28.025 | 157 | 89 | 5 | 122 | 255 | 438 | 593 | 7.44e-11 | 63.2 |
| Msa0259790 | AT5G41315.2 | 28.025 | 157 | 89 | 5 | 122 | 255 | 446 | 601 | 7.89e-11 | 63.2 |
Find 53 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTGAAGTGAGGGTTCT+AGG | 0.256835 | 2_2:+57144350 | Msa0259790:CDS |
| ACTAGGCCAGTTGTGAAAAT+AGG | 0.274393 | 2_2:-57143683 | None:intergenic |
| TGGCACTGTCATTGTAATTA+AGG | 0.295958 | 2_2:-57144277 | None:intergenic |
| CAAGACATTGGTAGTTGTTA+TGG | 0.303801 | 2_2:-57144459 | None:intergenic |
| AAGAGTAGTGGCTACGTTGC+AGG | 0.356620 | 2_2:+57144731 | Msa0259790:CDS |
| AGTATATAAGTTGTTGGTAT+TGG | 0.379293 | 2_2:-57143776 | None:intergenic |
| GGGGAATTGGTCTTATGAAT+TGG | 0.385058 | 2_2:+57143394 | Msa0259790:CDS |
| ACATAATAACAGAGAGGAAC+AGG | 0.423437 | 2_2:+57143933 | Msa0259790:CDS |
| CTCTTCATCAAATATGTTGT+TGG | 0.428970 | 2_2:-57143612 | None:intergenic |
| CTAGGCCAGTTGTGAAAATA+GGG | 0.436339 | 2_2:-57143682 | None:intergenic |
| TAAGACAGTATATAAGTTGT+TGG | 0.443854 | 2_2:-57143782 | None:intergenic |
| ATGAACACTAAAGAATGTTA+TGG | 0.445823 | 2_2:+57144308 | Msa0259790:CDS |
| AGCTTGAAGTGAGGGTTCTA+GGG | 0.452434 | 2_2:+57144351 | Msa0259790:CDS |
| TCTGATTCATGATATCTTTG+AGG | 0.462411 | 2_2:-57143637 | None:intergenic |
| ATTTATACCTGGATTGAAGA+AGG | 0.472752 | 2_2:+57143994 | Msa0259790:CDS |
| AAATAATGGAGGAGAATTCA+TGG | 0.475963 | 2_2:+57143372 | None:intergenic |
| AAGGAGATGAGATCTTGTTA+TGG | 0.492453 | 2_2:-57144258 | None:intergenic |
| AGAACCCTCACTTCAAGCTC+TGG | 0.495246 | 2_2:-57144347 | None:intergenic |
| GAAGAAGACATCAAGAAGAA+AGG | 0.507699 | 2_2:+57144218 | Msa0259790:CDS |
| TTTGCCTTTGTCATCATCAA+AGG | 0.512672 | 2_2:+57143853 | Msa0259790:CDS |
| TGTTGAATGAGAGACATTGA+TGG | 0.516688 | 2_2:-57143720 | None:intergenic |
| GATTCGCTGTGGGAAGCAAA+AGG | 0.520238 | 2_2:+57144391 | Msa0259790:CDS |
| AGACTAACCTTCTTCAATCC+AGG | 0.524279 | 2_2:-57144001 | None:intergenic |
| ATTTCCAGAGCTTGAAGTGA+GGG | 0.525230 | 2_2:+57144343 | Msa0259790:CDS |
| ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2_2:-57143844 | None:intergenic |
| GAACTTTCAGCATTTATACC+TGG | 0.532111 | 2_2:+57143983 | Msa0259790:CDS |
| TTTAGTGTTCATTTCACCCA+TGG | 0.540015 | 2_2:-57144297 | None:intergenic |
| TCTTCTTTGAATTCGACCCT+CGG | 0.540602 | 2_2:-57143883 | None:intergenic |
| ACGGACAAGGTTCATGTACT+AGG | 0.549231 | 2_2:+57144146 | Msa0259790:CDS |
| TGGACGAGTTGTTGTTGACT+AGG | 0.551791 | 2_2:-57143700 | None:intergenic |
| AATAATGGAGGAGAATTCAT+GGG | 0.555334 | 2_2:+57143373 | None:intergenic |
| GAATCATGGTGTTGTTCAGT+TGG | 0.556807 | 2_2:-57143830 | None:intergenic |
| AATTACAATGACAGTGCCAT+GGG | 0.574092 | 2_2:+57144281 | Msa0259790:CDS |
| AGTTGGTGGTAACAATGTAG+TGG | 0.574871 | 2_2:-57143813 | None:intergenic |
| TGAAGTGAGGGTTCTAGGGA+AGG | 0.581565 | 2_2:+57144355 | Msa0259790:CDS |
| TAATTACAATGACAGTGCCA+TGG | 0.581993 | 2_2:+57144280 | Msa0259790:CDS |
| CATTTCCAGAGCTTGAAGTG+AGG | 0.591406 | 2_2:+57144342 | Msa0259790:CDS |
| AGTTGTGAAAATAGGGACAC+TGG | 0.603100 | 2_2:-57143675 | None:intergenic |
| TCATGGTGTTGTTCAGTTGG+TGG | 0.611030 | 2_2:-57143827 | None:intergenic |
| TTAGCCTTTGATGATGACAA+AGG | 0.628673 | 2_2:-57143857 | None:intergenic |
| AATGGCTGTGTAGACGGACA+AGG | 0.629049 | 2_2:+57144133 | Msa0259790:intron |
| TGTTAATCAAGATTCGCTGT+GGG | 0.635001 | 2_2:+57144381 | Msa0259790:CDS |
| GTGTTAATCAAGATTCGCTG+TGG | 0.639073 | 2_2:+57144380 | Msa0259790:CDS |
| TCATCAAAGGCTAACAACCG+AGG | 0.644886 | 2_2:+57143866 | Msa0259790:CDS |
| TAAATACAAGTTGACCGTGA+AGG | 0.646419 | 2_2:+57144692 | Msa0259790:CDS |
| ATAATGGAGGAGAATTCATG+GGG | 0.647254 | 2_2:+57143374 | None:intergenic |
| TGGGAAGCAAAAGGAAATTG+TGG | 0.650519 | 2_2:+57144400 | Msa0259790:CDS |
| GGGACACTGGACTGATCTTG+TGG | 0.651566 | 2_2:-57143662 | None:intergenic |
| GCTCTGGAAATGTTTCATTG+TGG | 0.678911 | 2_2:-57144331 | None:intergenic |
| CATCAAAGGCTAACAACCGA+GGG | 0.679164 | 2_2:+57143867 | Msa0259790:CDS |
| AGGAGAAGCTGTCAAGTACG+TGG | 0.701643 | 2_2:+57144166 | Msa0259790:CDS |
| TAGATCACATAATAACAGAG+AGG | 0.731708 | 2_2:+57143927 | Msa0259790:CDS |
| TAATGGAGGAGAATTCATGG+GGG | 0.808663 | 2_2:+57143375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACAATAATTAATCAAG+TGG | - | chr2_2:57143549-57143568 | None:intergenic | 15.0% |
| !! | AAAAAAATTAAGAAAGGAAT+TGG | - | chr2_2:57144052-57144071 | None:intergenic | 15.0% |
| !! | TAAAACAATAATTAATCAAG+TGG | - | chr2_2:57143549-57143568 | None:intergenic | 15.0% |
| !! | AAAAAAATTAAGAAAGGAAT+TGG | - | chr2_2:57144052-57144071 | None:intergenic | 15.0% |
| !! | TTTACAAATTATTCGTTCTT+AGG | + | chr2_2:57143565-57143584 | Msa0259790:intron | 20.0% |
| !!! | TCCTTTCTTAATTTTTTTTC+TGG | + | chr2_2:57144054-57144073 | Msa0259790:intron | 20.0% |
| !! | TCCAGAAAAAAAATTAAGAA+AGG | - | chr2_2:57144058-57144077 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTAGTTATCAT+TGG | + | chr2_2:57144085-57144104 | Msa0259790:intron | 20.0% |
| !! | CTATAAAATGACTTATCTAA+TGG | + | chr2_2:57144115-57144134 | Msa0259790:intron | 20.0% |
| !!! | TGAATTGTTTTTCTTTTTTG+TGG | - | chr2_2:57144535-57144554 | None:intergenic | 20.0% |
| !! | GAAACTTACATTGTAATATA+TGG | - | chr2_2:57144629-57144648 | None:intergenic | 20.0% |
| !! | TTTACAAATTATTCGTTCTT+AGG | + | chr2_2:57143565-57143584 | Msa0259790:intron | 20.0% |
| !!! | TCCTTTCTTAATTTTTTTTC+TGG | + | chr2_2:57144054-57144073 | Msa0259790:intron | 20.0% |
| !! | TCCAGAAAAAAAATTAAGAA+AGG | - | chr2_2:57144058-57144077 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTAGTTATCAT+TGG | + | chr2_2:57144085-57144104 | Msa0259790:intron | 20.0% |
| !! | CTATAAAATGACTTATCTAA+TGG | + | chr2_2:57144115-57144134 | Msa0259790:intron | 20.0% |
| !!! | TGAATTGTTTTTCTTTTTTG+TGG | - | chr2_2:57144535-57144554 | None:intergenic | 20.0% |
| !! | GAAACTTACATTGTAATATA+TGG | - | chr2_2:57144629-57144648 | None:intergenic | 20.0% |
| ! | AATTATTCGTTCTTAGGAAA+TGG | + | chr2_2:57143571-57143590 | Msa0259790:intron | 25.0% |
| ! | AGTATATAAGTTGTTGGTAT+TGG | - | chr2_2:57143779-57143798 | None:intergenic | 25.0% |
| ! | TAAGACAGTATATAAGTTGT+TGG | - | chr2_2:57143785-57143804 | None:intergenic | 25.0% |
| ! | ATGAACACTAAAGAATGTTA+TGG | + | chr2_2:57144308-57144327 | Msa0259790:CDS | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | + | chr2_2:57144665-57144684 | Msa0259790:intron | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | + | chr2_2:57144666-57144685 | Msa0259790:intron | 25.0% |
| ! | AATTATTCGTTCTTAGGAAA+TGG | + | chr2_2:57143571-57143590 | Msa0259790:intron | 25.0% |
| ! | AGTATATAAGTTGTTGGTAT+TGG | - | chr2_2:57143779-57143798 | None:intergenic | 25.0% |
| ! | TAAGACAGTATATAAGTTGT+TGG | - | chr2_2:57143785-57143804 | None:intergenic | 25.0% |
| ! | ATGAACACTAAAGAATGTTA+TGG | + | chr2_2:57144308-57144327 | Msa0259790:CDS | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | + | chr2_2:57144665-57144684 | Msa0259790:intron | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | + | chr2_2:57144666-57144685 | Msa0259790:intron | 25.0% |
| ! | GTAGTTTTTATAGTTAGTGG+AGG | - | chr2_2:57143527-57143546 | None:intergenic | 30.0% |
| ! | GTGGTAGTTTTTATAGTTAG+TGG | - | chr2_2:57143530-57143549 | None:intergenic | 30.0% |
| CTCTTCATCAAATATGTTGT+TGG | - | chr2_2:57143615-57143634 | None:intergenic | 30.0% | |
| TCTGATTCATGATATCTTTG+AGG | - | chr2_2:57143640-57143659 | None:intergenic | 30.0% | |
| TAGATCACATAATAACAGAG+AGG | + | chr2_2:57143927-57143946 | Msa0259790:CDS | 30.0% | |
| ATTTATACCTGGATTGAAGA+AGG | + | chr2_2:57143994-57144013 | Msa0259790:CDS | 30.0% | |
| !! | ATGTTAAGAGTGTTTCCAAA+TGG | - | chr2_2:57144485-57144504 | None:intergenic | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | - | chr2_2:57144583-57144602 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACTAGATCCTTCA+CGG | - | chr2_2:57144709-57144728 | None:intergenic | 30.0% |
| AGTGAAAAAACTAAGAGTAG+TGG | + | chr2_2:57144719-57144738 | Msa0259790:CDS | 30.0% | |
| ! | GTAGTTTTTATAGTTAGTGG+AGG | - | chr2_2:57143527-57143546 | None:intergenic | 30.0% |
| ! | GTGGTAGTTTTTATAGTTAG+TGG | - | chr2_2:57143530-57143549 | None:intergenic | 30.0% |
| CTCTTCATCAAATATGTTGT+TGG | - | chr2_2:57143615-57143634 | None:intergenic | 30.0% | |
| TCTGATTCATGATATCTTTG+AGG | - | chr2_2:57143640-57143659 | None:intergenic | 30.0% | |
| TAGATCACATAATAACAGAG+AGG | + | chr2_2:57143927-57143946 | Msa0259790:CDS | 30.0% | |
| ATTTATACCTGGATTGAAGA+AGG | + | chr2_2:57143994-57144013 | Msa0259790:CDS | 30.0% | |
| !! | ATGTTAAGAGTGTTTCCAAA+TGG | - | chr2_2:57144485-57144504 | None:intergenic | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | - | chr2_2:57144583-57144602 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACTAGATCCTTCA+CGG | - | chr2_2:57144709-57144728 | None:intergenic | 30.0% |
| AGTGAAAAAACTAAGAGTAG+TGG | + | chr2_2:57144719-57144738 | Msa0259790:CDS | 30.0% | |
| TGTTGAATGAGAGACATTGA+TGG | - | chr2_2:57143723-57143742 | None:intergenic | 35.0% | |
| ATGACAAAGGCAAAGAATCA+TGG | - | chr2_2:57143847-57143866 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+AGG | + | chr2_2:57143853-57143872 | Msa0259790:CDS | 35.0% | |
| !! | TTAGCCTTTGATGATGACAA+AGG | - | chr2_2:57143860-57143879 | None:intergenic | 35.0% |
| ACATAATAACAGAGAGGAAC+AGG | + | chr2_2:57143933-57143952 | Msa0259790:CDS | 35.0% | |
| GAACTTTCAGCATTTATACC+TGG | + | chr2_2:57143983-57144002 | Msa0259790:CDS | 35.0% | |
| TTATCTAATGGCTGTGTAGA+CGG | + | chr2_2:57144127-57144146 | Msa0259790:intron | 35.0% | |
| GAAGAAGACATCAAGAAGAA+AGG | + | chr2_2:57144218-57144237 | Msa0259790:CDS | 35.0% | |
| AAGGAGATGAGATCTTGTTA+TGG | - | chr2_2:57144261-57144280 | None:intergenic | 35.0% | |
| TGGCACTGTCATTGTAATTA+AGG | - | chr2_2:57144280-57144299 | None:intergenic | 35.0% | |
| TAATTACAATGACAGTGCCA+TGG | + | chr2_2:57144280-57144299 | Msa0259790:CDS | 35.0% | |
| AATTACAATGACAGTGCCAT+GGG | + | chr2_2:57144281-57144300 | Msa0259790:CDS | 35.0% | |
| TTTAGTGTTCATTTCACCCA+TGG | - | chr2_2:57144300-57144319 | None:intergenic | 35.0% | |
| TGTTAATCAAGATTCGCTGT+GGG | + | chr2_2:57144381-57144400 | Msa0259790:CDS | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | - | chr2_2:57144462-57144481 | None:intergenic | 35.0% |
| TAACATCACCATTATTGCTC+AGG | + | chr2_2:57144499-57144518 | Msa0259790:intron | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | - | chr2_2:57144510-57144529 | None:intergenic | 35.0% | |
| ! | TAAATACAAGTTGACCGTGA+AGG | + | chr2_2:57144692-57144711 | Msa0259790:CDS | 35.0% |
| TGTTGAATGAGAGACATTGA+TGG | - | chr2_2:57143723-57143742 | None:intergenic | 35.0% | |
| ATGACAAAGGCAAAGAATCA+TGG | - | chr2_2:57143847-57143866 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+AGG | + | chr2_2:57143853-57143872 | Msa0259790:CDS | 35.0% | |
| !! | TTAGCCTTTGATGATGACAA+AGG | - | chr2_2:57143860-57143879 | None:intergenic | 35.0% |
| ACATAATAACAGAGAGGAAC+AGG | + | chr2_2:57143933-57143952 | Msa0259790:CDS | 35.0% | |
| GAACTTTCAGCATTTATACC+TGG | + | chr2_2:57143983-57144002 | Msa0259790:CDS | 35.0% | |
| TTATCTAATGGCTGTGTAGA+CGG | + | chr2_2:57144127-57144146 | Msa0259790:intron | 35.0% | |
| GAAGAAGACATCAAGAAGAA+AGG | + | chr2_2:57144218-57144237 | Msa0259790:CDS | 35.0% | |
| AAGGAGATGAGATCTTGTTA+TGG | - | chr2_2:57144261-57144280 | None:intergenic | 35.0% | |
| TGGCACTGTCATTGTAATTA+AGG | - | chr2_2:57144280-57144299 | None:intergenic | 35.0% | |
| TAATTACAATGACAGTGCCA+TGG | + | chr2_2:57144280-57144299 | Msa0259790:CDS | 35.0% | |
| AATTACAATGACAGTGCCAT+GGG | + | chr2_2:57144281-57144300 | Msa0259790:CDS | 35.0% | |
| TTTAGTGTTCATTTCACCCA+TGG | - | chr2_2:57144300-57144319 | None:intergenic | 35.0% | |
| TGTTAATCAAGATTCGCTGT+GGG | + | chr2_2:57144381-57144400 | Msa0259790:CDS | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | - | chr2_2:57144462-57144481 | None:intergenic | 35.0% |
| TAACATCACCATTATTGCTC+AGG | + | chr2_2:57144499-57144518 | Msa0259790:intron | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | - | chr2_2:57144510-57144529 | None:intergenic | 35.0% | |
| ! | TAAATACAAGTTGACCGTGA+AGG | + | chr2_2:57144692-57144711 | Msa0259790:CDS | 35.0% |
| !! | GGGGAATTGGTCTTATGAAT+TGG | + | chr2_2:57143394-57143413 | Msa0259790:CDS | 40.0% |
| AGTTGTGAAAATAGGGACAC+TGG | - | chr2_2:57143678-57143697 | None:intergenic | 40.0% | |
| ! | AGTGTCCCTATTTTCACAAC+TGG | + | chr2_2:57143677-57143696 | Msa0259790:CDS | 40.0% |
| CTAGGCCAGTTGTGAAAATA+GGG | - | chr2_2:57143685-57143704 | None:intergenic | 40.0% | |
| ACTAGGCCAGTTGTGAAAAT+AGG | - | chr2_2:57143686-57143705 | None:intergenic | 40.0% | |
| !! | TGTTGGTATTGGTAATGAGC+TGG | - | chr2_2:57143768-57143787 | None:intergenic | 40.0% |
| !! | AGTTGGTGGTAACAATGTAG+TGG | - | chr2_2:57143816-57143835 | None:intergenic | 40.0% |
| !! | GAATCATGGTGTTGTTCAGT+TGG | - | chr2_2:57143833-57143852 | None:intergenic | 40.0% |
| TCTTCTTTGAATTCGACCCT+CGG | - | chr2_2:57143886-57143905 | None:intergenic | 40.0% | |
| AGACTAACCTTCTTCAATCC+AGG | - | chr2_2:57144004-57144023 | None:intergenic | 40.0% | |
| !! | GCTCTGGAAATGTTTCATTG+TGG | - | chr2_2:57144334-57144353 | None:intergenic | 40.0% |
| ATTTCCAGAGCTTGAAGTGA+GGG | + | chr2_2:57144343-57144362 | Msa0259790:CDS | 40.0% | |
| GTGTTAATCAAGATTCGCTG+TGG | + | chr2_2:57144380-57144399 | Msa0259790:CDS | 40.0% | |
| TGGGAAGCAAAAGGAAATTG+TGG | + | chr2_2:57144400-57144419 | Msa0259790:CDS | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | + | chr2_2:57144467-57144486 | Msa0259790:intron | 40.0% | |
| GTTTCCAAATGGCAAGACAT+TGG | - | chr2_2:57144474-57144493 | None:intergenic | 40.0% | |
| !! | GGGGAATTGGTCTTATGAAT+TGG | + | chr2_2:57143394-57143413 | Msa0259790:CDS | 40.0% |
| AGTTGTGAAAATAGGGACAC+TGG | - | chr2_2:57143678-57143697 | None:intergenic | 40.0% | |
| ! | AGTGTCCCTATTTTCACAAC+TGG | + | chr2_2:57143677-57143696 | Msa0259790:CDS | 40.0% |
| CTAGGCCAGTTGTGAAAATA+GGG | - | chr2_2:57143685-57143704 | None:intergenic | 40.0% | |
| ACTAGGCCAGTTGTGAAAAT+AGG | - | chr2_2:57143686-57143705 | None:intergenic | 40.0% | |
| !! | TGTTGGTATTGGTAATGAGC+TGG | - | chr2_2:57143768-57143787 | None:intergenic | 40.0% |
| !! | AGTTGGTGGTAACAATGTAG+TGG | - | chr2_2:57143816-57143835 | None:intergenic | 40.0% |
| !! | GAATCATGGTGTTGTTCAGT+TGG | - | chr2_2:57143833-57143852 | None:intergenic | 40.0% |
| TCTTCTTTGAATTCGACCCT+CGG | - | chr2_2:57143886-57143905 | None:intergenic | 40.0% | |
| AGACTAACCTTCTTCAATCC+AGG | - | chr2_2:57144004-57144023 | None:intergenic | 40.0% | |
| !! | GCTCTGGAAATGTTTCATTG+TGG | - | chr2_2:57144334-57144353 | None:intergenic | 40.0% |
| ATTTCCAGAGCTTGAAGTGA+GGG | + | chr2_2:57144343-57144362 | Msa0259790:CDS | 40.0% | |
| GTGTTAATCAAGATTCGCTG+TGG | + | chr2_2:57144380-57144399 | Msa0259790:CDS | 40.0% | |
| TGGGAAGCAAAAGGAAATTG+TGG | + | chr2_2:57144400-57144419 | Msa0259790:CDS | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | + | chr2_2:57144467-57144486 | Msa0259790:intron | 40.0% | |
| GTTTCCAAATGGCAAGACAT+TGG | - | chr2_2:57144474-57144493 | None:intergenic | 40.0% | |
| AGGAGAATTCATGGGGGAAT+TGG | + | chr2_2:57143381-57143400 | Msa0259790:CDS | 45.0% | |
| ! | TGGACGAGTTGTTGTTGACT+AGG | - | chr2_2:57143703-57143722 | None:intergenic | 45.0% |
| !! | TCATGGTGTTGTTCAGTTGG+TGG | - | chr2_2:57143830-57143849 | None:intergenic | 45.0% |
| TCATCAAAGGCTAACAACCG+AGG | + | chr2_2:57143866-57143885 | Msa0259790:CDS | 45.0% | |
| CATCAAAGGCTAACAACCGA+GGG | + | chr2_2:57143867-57143886 | Msa0259790:CDS | 45.0% | |
| ACGGACAAGGTTCATGTACT+AGG | + | chr2_2:57144146-57144165 | Msa0259790:CDS | 45.0% | |
| ! | GACATCAAGAAGAAAGGTGC+AGG | + | chr2_2:57144224-57144243 | Msa0259790:intron | 45.0% |
| CATTTCCAGAGCTTGAAGTG+AGG | + | chr2_2:57144342-57144361 | Msa0259790:CDS | 45.0% | |
| AGCTTGAAGTGAGGGTTCTA+GGG | + | chr2_2:57144351-57144370 | Msa0259790:CDS | 45.0% | |
| AGGAGAATTCATGGGGGAAT+TGG | + | chr2_2:57143381-57143400 | Msa0259790:CDS | 45.0% | |
| ! | TGGACGAGTTGTTGTTGACT+AGG | - | chr2_2:57143703-57143722 | None:intergenic | 45.0% |
| !! | TCATGGTGTTGTTCAGTTGG+TGG | - | chr2_2:57143830-57143849 | None:intergenic | 45.0% |
| TCATCAAAGGCTAACAACCG+AGG | + | chr2_2:57143866-57143885 | Msa0259790:CDS | 45.0% | |
| CATCAAAGGCTAACAACCGA+GGG | + | chr2_2:57143867-57143886 | Msa0259790:CDS | 45.0% | |
| ACGGACAAGGTTCATGTACT+AGG | + | chr2_2:57144146-57144165 | Msa0259790:CDS | 45.0% | |
| ! | GACATCAAGAAGAAAGGTGC+AGG | + | chr2_2:57144224-57144243 | Msa0259790:intron | 45.0% |
| CATTTCCAGAGCTTGAAGTG+AGG | + | chr2_2:57144342-57144361 | Msa0259790:CDS | 45.0% | |
| AGCTTGAAGTGAGGGTTCTA+GGG | + | chr2_2:57144351-57144370 | Msa0259790:CDS | 45.0% | |
| !! | TATATTATACAAATTAAATT+TGG | - | chr2_2:57144605-57144624 | None:intergenic | 5.0% |
| !! | TATATTATACAAATTAAATT+TGG | - | chr2_2:57144605-57144624 | None:intergenic | 5.0% |
| AATGGCTGTGTAGACGGACA+AGG | + | chr2_2:57144133-57144152 | Msa0259790:intron | 50.0% | |
| AGGAGAAGCTGTCAAGTACG+TGG | + | chr2_2:57144166-57144185 | Msa0259790:CDS | 50.0% | |
| AGAACCCTCACTTCAAGCTC+TGG | - | chr2_2:57144350-57144369 | None:intergenic | 50.0% | |
| GAGCTTGAAGTGAGGGTTCT+AGG | + | chr2_2:57144350-57144369 | Msa0259790:CDS | 50.0% | |
| !! | TGAAGTGAGGGTTCTAGGGA+AGG | + | chr2_2:57144355-57144374 | Msa0259790:CDS | 50.0% |
| GATTCGCTGTGGGAAGCAAA+AGG | + | chr2_2:57144391-57144410 | Msa0259790:CDS | 50.0% | |
| AAGAGTAGTGGCTACGTTGC+AGG | + | chr2_2:57144731-57144750 | Msa0259790:CDS | 50.0% | |
| AATGGCTGTGTAGACGGACA+AGG | + | chr2_2:57144133-57144152 | Msa0259790:intron | 50.0% | |
| AGGAGAAGCTGTCAAGTACG+TGG | + | chr2_2:57144166-57144185 | Msa0259790:CDS | 50.0% | |
| AGAACCCTCACTTCAAGCTC+TGG | - | chr2_2:57144350-57144369 | None:intergenic | 50.0% | |
| GAGCTTGAAGTGAGGGTTCT+AGG | + | chr2_2:57144350-57144369 | Msa0259790:CDS | 50.0% | |
| !! | TGAAGTGAGGGTTCTAGGGA+AGG | + | chr2_2:57144355-57144374 | Msa0259790:CDS | 50.0% |
| GATTCGCTGTGGGAAGCAAA+AGG | + | chr2_2:57144391-57144410 | Msa0259790:CDS | 50.0% | |
| AAGAGTAGTGGCTACGTTGC+AGG | + | chr2_2:57144731-57144750 | Msa0259790:CDS | 50.0% | |
| GGGACACTGGACTGATCTTG+TGG | - | chr2_2:57143665-57143684 | None:intergenic | 55.0% | |
| GGGACACTGGACTGATCTTG+TGG | - | chr2_2:57143665-57143684 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57143377 | 57144776 | 57143377 | ID=Msa0259790;Name=Msa0259790 |
| chr2_2 | mRNA | 57143377 | 57144776 | 57143377 | ID=Msa0259790-mRNA-1;Parent=Msa0259790;Name=Msa0259790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.83|0.4|0.16|6|0|291 |
| chr2_2 | exon | 57143377 | 57143415 | 57143377 | ID=Msa0259790-mRNA-1:exon:17303;Parent=Msa0259790-mRNA-1 |
| chr2_2 | exon | 57143587 | 57143759 | 57143587 | ID=Msa0259790-mRNA-1:exon:17304;Parent=Msa0259790-mRNA-1 |
| chr2_2 | exon | 57143769 | 57144015 | 57143769 | ID=Msa0259790-mRNA-1:exon:17305;Parent=Msa0259790-mRNA-1 |
| chr2_2 | exon | 57144146 | 57144239 | 57144146 | ID=Msa0259790-mRNA-1:exon:17306;Parent=Msa0259790-mRNA-1 |
| chr2_2 | exon | 57144246 | 57144475 | 57144246 | ID=Msa0259790-mRNA-1:exon:17307;Parent=Msa0259790-mRNA-1 |
| chr2_2 | exon | 57144684 | 57144776 | 57144684 | ID=Msa0259790-mRNA-1:exon:17308;Parent=Msa0259790-mRNA-1 |
| chr2_2 | CDS | 57143377 | 57143415 | 57143377 | ID=Msa0259790-mRNA-1:cds;Parent=Msa0259790-mRNA-1 |
| chr2_2 | CDS | 57143587 | 57143759 | 57143587 | ID=Msa0259790-mRNA-1:cds;Parent=Msa0259790-mRNA-1 |
| chr2_2 | CDS | 57143769 | 57144015 | 57143769 | ID=Msa0259790-mRNA-1:cds;Parent=Msa0259790-mRNA-1 |
| chr2_2 | CDS | 57144146 | 57144239 | 57144146 | ID=Msa0259790-mRNA-1:cds;Parent=Msa0259790-mRNA-1 |
| chr2_2 | CDS | 57144246 | 57144475 | 57144246 | ID=Msa0259790-mRNA-1:cds;Parent=Msa0259790-mRNA-1 |
| chr2_2 | CDS | 57144684 | 57144776 | 57144684 | ID=Msa0259790-mRNA-1:cds;Parent=Msa0259790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
