AlfalfaGEDB | Msa0261320

M. sativa cultivar zhongmu-4 / Msa0261320

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261320	XP_003597080.1	87.072	789	97	3	1	785	1	788	0.0	1376

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261320	sp\|O64477\|Y2913_ARATH	57.161	789	318	10	10	786	4	784	0.0	882

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261320	G7IRM2	87.072	789	97	3	1	785	1	788	0.0	1376

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261320	MtrunA17_Chr2g0323301	73.752	781	196	4	6	781	3	779	0.0	1165
Msa0261320	MtrunA17_Chr2g0323341	87.264	636	77	2	153	785	62	696	0.0	1119
Msa0261320	MtrunA17_Chr2g0323341	80.000	65	12	1	1	64	1	65	1.47e-21	101
Msa0261320	MtrunA17_Chr4g0023071	66.158	786	254	5	5	785	3	781	0.0	1074
Msa0261320	MtrunA17_Chr8g0348661	38.972	798	415	20	31	786	14	781	8.66e-166	513
Msa0261320	MtrunA17_Chr7g0236121	36.687	815	445	28	2	778	3	784	9.05e-159	494
Msa0261320	MtrunA17_Chr2g0280711	37.948	809	418	23	32	781	30	813	3.60e-158	494
Msa0261320	MtrunA17_Chr2g0280681	37.238	811	448	21	5	781	2	785	2.18e-156	489
Msa0261320	MtrunA17_Chr3g0093161	36.888	797	457	16	11	780	4	781	2.74e-156	488
Msa0261320	MtrunA17_Chr3g0084451	37.168	791	446	16	29	788	29	799	3.61e-155	485

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261320	AT2G19130.1	57.161	789	318	10	10	786	4	784	0.0	882
Msa0261320	AT4G00340.1	40.583	823	421	22	31	822	20	805	8.62e-172	529
Msa0261320	AT4G21380.1	38.348	811	416	23	24	777	25	808	2.92e-169	523
Msa0261320	AT4G00340.2	40.170	824	402	22	31	822	20	784	4.45e-169	521
Msa0261320	AT4G27290.2	38.358	816	426	22	16	782	10	797	5.92e-164	509
Msa0261320	AT4G27290.1	38.083	793	414	19	16	782	10	751	7.84e-159	494
Msa0261320	AT1G65790.1	36.930	834	419	28	24	793	28	818	3.47e-157	491
Msa0261320	AT4G11900.1	36.949	839	446	23	10	786	9	826	2.24e-155	487
Msa0261320	AT1G65800.1	37.562	812	412	26	38	787	38	816	7.38e-153	480
Msa0261320	AT1G61610.1	34.194	813	463	21	20	781	15	806	6.89e-150	472

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Find 287 sgRNAs with CRISPR-Local

Find 538 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTTTGCAATGTGA+GGG	0.569321	2_2:-59629663	Msa0261320:CDS
AAAACAGTAATCGGGCAAAG+GGG	0.700415	2_2:-59629365	Msa0261320:CDS
AAAACTCTGTACTGTTGCTT+GGG	0.461459	2_2:-59625016	Msa0261320:CDS
AAAATAGAAGAGGAGAGAGG+GGG	0.707351	2_2:+59625604	None:intergenic
AAAATTGATATGAAATTGAG+AGG	0.548950	2_2:+59623864	None:intergenic
AAACTATCCATCAGTTTCAA+TGG	0.485427	2_2:-59625675	Msa0261320:CDS
AAACTGGAAGGGATTAGCCA+AGG	0.650057	2_2:-59629096	Msa0261320:CDS
AAACTTGAGAGAAAATCAGG+TGG	0.721954	2_2:-59626849	Msa0261320:intron
AAAGAGAATCGACCCGCTGA+AGG	0.609205	2_2:+59630113	None:intergenic
AAAGAGCCATGTTCAATACA+AGG	0.581244	2_2:-59630682	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAGTTAGAAGAATTACC+TGG	+	chr2_2:59623735-59623754	None:intergenic	30.0%
CTAACTACTACATAGGAATA+TGG	-	chr2_2:59623745-59623764	Msa0261320:intron	30.0%
TCTCTGTACAAACAATTGTT+TGG	-	chr2_2:59623778-59623797	Msa0261320:intron	30.0%
CTCTGTACAAACAATTGTTT+GGG	-	chr2_2:59623779-59623798	Msa0261320:intron	30.0%
ATGAGTATTCAAACCAAGTT+TGG	-	chr2_2:59623880-59623899	Msa0261320:CDS	30.0%
CTAAAAATATGTCCATTCCA+AGG	+	chr2_2:59624221-59624240	None:intergenic	30.0%
ATGTAATTTAACCTCATCTC+AGG	+	chr2_2:59624251-59624270	None:intergenic	30.0%
ATAACACTTCCATTATATCC+CGG	-	chr2_2:59624327-59624346	Msa0261320:intron	30.0%
TAAACATCACATTGTACTCT+TGG	+	chr2_2:59624434-59624453	None:intergenic	30.0%
TGTGATGTTTATGCTTTATG+CGG	-	chr2_2:59624443-59624462	Msa0261320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	59623561	59630696	59623561	ID=Msa0261320;Name=Msa0261320
chr2_2	mRNA	59623561	59630696	59623561	ID=Msa0261320-mRNA-1;Parent=Msa0261320;Name=Msa0261320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|0.33\|1\|1\|6\|0\|1212
chr2_2	exon	59628345	59630696	59628345	ID=Msa0261320-mRNA-1:exon:18378;Parent=Msa0261320-mRNA-1
chr2_2	exon	59627611	59627671	59627611	ID=Msa0261320-mRNA-1:exon:18377;Parent=Msa0261320-mRNA-1
chr2_2	exon	59626850	59626930	59626850	ID=Msa0261320-mRNA-1:exon:18376;Parent=Msa0261320-mRNA-1
chr2_2	exon	59624890	59625699	59624890	ID=Msa0261320-mRNA-1:exon:18375;Parent=Msa0261320-mRNA-1
chr2_2	exon	59623830	59623978	59623830	ID=Msa0261320-mRNA-1:exon:18374;Parent=Msa0261320-mRNA-1
chr2_2	exon	59623561	59623746	59623561	ID=Msa0261320-mRNA-1:exon:18373;Parent=Msa0261320-mRNA-1
chr2_2	CDS	59628345	59630696	59628345	ID=Msa0261320-mRNA-1:cds;Parent=Msa0261320-mRNA-1
chr2_2	CDS	59627611	59627671	59627611	ID=Msa0261320-mRNA-1:cds;Parent=Msa0261320-mRNA-1
chr2_2	CDS	59626850	59626930	59626850	ID=Msa0261320-mRNA-1:cds;Parent=Msa0261320-mRNA-1
chr2_2	CDS	59624890	59625699	59624890	ID=Msa0261320-mRNA-1:cds;Parent=Msa0261320-mRNA-1
chr2_2	CDS	59623830	59623978	59623830	ID=Msa0261320-mRNA-1:cds;Parent=Msa0261320-mRNA-1
chr2_2	CDS	59623561	59623746	59623561	ID=Msa0261320-mRNA-1:cds;Parent=Msa0261320-mRNA-1

Gene Sequence

>Msa0261320

ATGTTCAATACAAGGAAGCCATGGTTCTGGCTTCCTCTTCTTGGCCTCATCTTCTCTTTACACTTCCATCATTCCCTTGCAGCTCTAACTACCATCACTGCAAATCAATTTCTCTCAGGTGATCAAACTCTAGTCTCTGAAGGAGGAATCTTTGAATTGGGTTTCTTTAAACCAGGTAATTCTTCTAACTACTACATAGGAATATGGTACAAAAAGATCTCTGTACAAACAATTGTTTGGGTAGCCAACAGAGACAACCCTGTCTCGAATAAAATCACTGCCACCTTAAAAATTTCAGCTGGTAATTTAGTTCTATTGAATGAGTATTCAAACCAAGTTTGGTCAACAAACATGAGTTCTCCTAAGTCAGATTCTGTTGTAGCTATTCTTCTAGATACTGGAAATCTTGTTTTAAGAAATAGGCCTGATGATGATGCATTAGATCCTCTATGGCAGAGTTTTGATTATCCAACAGATACATTTCTTCCTGGTGGAAAAATTAAGCTGGACAAGAAAACAAAGCAACCTCAGTATCTCACTTCATGGAAGAATAGGGACGATCCTTCAGCGGGTCGATTCTCTTTGGTGCTAGACCCAAAAGGAACAAATTCATATCATATTCTTTGGAATAAGTCTGAAGAGTATTGGACAAGTGGACCTTGGAATGGACATATTTTTAGTCTTGTTCCTGAGATGAGGTTAAATTACATTTACAATTTTTCATATGTGTCGAACGAGAATGAGAGCTATTTTACTTACTCATTGTATAACACTTCCATTATATCCCGGATGGTGATAGATATCTCGGGACAGATCAAGCAATACACGTGGTTGGAAAGTACCCAACAATGGAACCTCTTTTGGTCACAGCCAAGAGTACAATGTGATGTTTATGCTTTATGCGGTGCATTTGCGACCTGTGATGAAAATTATTGTACTTGTTTGCCTGCTTTTGAGCCAAAGTCATTGTCTGAATGGAATCTGGGGGATAACTCAGGTGGGTGTGTAAGGAAAACAAGTTTGCAATGTGAGGGTTCTAATCCTTCTAGTAGGGATAATGACGGGTTCCTTGCAATGACCAACATGGCTTTACCTAAATATGCACAATTTATGGGGTTAGGGAATGCAGATGAATGTCGATTAACTTGCTTGAGATACTGCTCCTGCACTGCTTTTGCATATGATAGTAATGGATGTTCAATTTGGGTCGGAGACCTCATGAATCTGCAAGAATTGTCTTCTGGTGATAGTAGTGGACGAACTTTGTATGTCAAACTTGCATTATCAGAAATTCATGATGATACTAATAAAAACAGTAATCGGGCAAAGGGGATTATTGGTGGTGTTGTGGGCGGGGTTGTTGGCACAGGGATACTCTTGACCCTTCTATTTTTTGTCATGCTTAGGCGAAGAAAGAGAATGCTTGCAACGGGGAAGCTCTTGGAGGGGTTTATGGTGGAATTTGGATACAAGGATTTGCAAAACGCGACTAAGAATTTCTCCGAGAAATTAGGAGGAAGTGGTTTTGGTTCTGTTTTCAAAGGAGCATTAGCTGATTCAAGTATGGTAGCAGTGAAGAAACTGGAAGGGATTAGCCAAGGAGAGAAGCAGTTCAGAACAAAAGTGAGTATAATAGGGACAATGCAACATGTTAATCTTGTTCGGCCCCGTGGATTTTGCTCAGAAGGTACCAAAAGGTTGCTGGTTTATGATTACATGCCAAATCGTTCCTTGGATTTCCATTTGTTTGGGAACAATAATTCCGATGTGTTGGGATGGAAAGCGAGATACCAAATTGCTCTTGGAATTGCTAGAGGACTAATTTACCTACACGAGAAATGCGAAGAATGTATCATACACTGTGATATAAAGCCAGAAAACATTCTCCTTGATGCTGATTTTTGTCCAAAAGTTGCAGACTTTGGTCTAGCTAAGTTAATTGGACGAGATTTCAGAAGAATCCTTACAAACATGAAAGGATCAAGAGGTTATCTTTCCCCAGAGTGGATATCTAGGGCTGCTATCACAGCCAAATCTGATGTTTACAGTTATGGAATGATGCTTTTTGAGGTTGTATCAGGTAGGAGGAACTTTGATCCATCTGTAGATGACCAAAATACTTTCTTTCCAACCTTGGCTGCTACAGTAGTTAACCAAGATGCTAATGTCCTTACCCTTTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAGGAAGTGACTGAAATGATAAAAGTTGCTTCTTGGTGTGTCCAAGAAAATGAAACTCAGAGGCCAACCATGCGTCAAGCAGTTCAAATTCTCGAGGGGACCTTGAATGTGAATTTGCCACCAATTCCAAGATTCAATCAAGCAGTAGGAAATGTTATGTTAGAAAGCAAAGATGATCAGAATGGACCATCAGAAATACAAAAAGAGAGCACATCAGAGGGCGAAAGCGTGAAACAAAAACGAGCGAACGTTAGTATGCGAAAACTTGAGAGAAAATCAGGTGCTAAACTATCCATCAGTTTCAATGGTCAAGCAGTAGGGTTCTTTAGCTGCACTAGAGGAGTGAGACAAGGAGTCCCCCTCTCTCCTCTTCTATTTTGTTTGGCTGAAGAGGTGATCAGTAGGGGCCTTGAGGCTTTGGTTGGTACAGGCAGATTGACTCCTATCAGGGCCACCAGAACTCATTTTCTCTCTAGCCATTGCTTGTATGCTGATGATATTCTCATCTTTTGTCAAGGAACCCTAGTTAATATGAAAAACATCATGAAGCTTTTTGAGAAATATGGTCAATACTCTGGACAAATGGTTAATGCTAATAAAAGTAAATTTTATTCTGGTGCCATCACTCTGTCCAGAATTCACACTATCAGCTCCATCACTGGTTTCAGTCATGGTTCTCTTCCTTTCACATATTTAGGGGTTCCTCTGTTTAAGGGAAAACCTAAGTCTATACATTTTAAACCCATTGTGGACAGAATTATGTTCAAGCTGAGTGCCTGGAAAGGTAGATTGTTAACTATAATGGGAAGAGTTCAGTTAATAAATACTGTCATTAGCAGCATGCTTACTTATTCATTCCATGTGTACAAGTGGCCCCCTAACTTGCTAAATGAGATTGCTAAAGGTATGAGAAATTTCATTTGGAATGGTAATTGGGAACAAAGAAAACTCTGTACTGTTGCTTGGGCCAATATATGCAAACCCAGAGCTGAGGGAGGCCTATCAGTGAGGGATCCCTCCAAAGTTAATCAGGCTTCTCTCATTTTCCTCACTTGGAAATTTTTAACCTCTGAGGAACAATGGGCTCAGCTGTATCAAAACCGTAAAAACCTTCAAGAACAAGATGAAGATTCATCTTCATCTTCAACCCTAACCGAACCAAAATCACCACAAAATCCTCCAAATCCTCTCAATTTCATATCAATTTTCATCAATTCAACCATAACAGATTCATTTCAGCAAAGGCTCTCAGAAGCATCATCATCATCGAGCAAGAATCGCACCAATTCTGCAATTCAAAGTGCGAATTCGTCACGAAGTGTGACAAACTCCAGCACCGATCACAGAGGCGCGTGTAGATCAGAGAAGAAGAGGGATCGAAGCTGGATCGAACCAGAGAAGAAGGAGAGTGAAGCTACGCACGCGTAA

Protein sequence

>Msa0261320

MFNTRKPWFWLPLLGLIFSLHFHHSLAALTTITANQFLSGDQTLVSEGGIFELGFFKPGNSSNYYIGIWYKKISVQTIVWVANRDNPVSNKITATLKISAGNLVLLNEYSNQVWSTNMSSPKSDSVVAILLDTGNLVLRNRPDDDALDPLWQSFDYPTDTFLPGGKIKLDKKTKQPQYLTSWKNRDDPSAGRFSLVLDPKGTNSYHILWNKSEEYWTSGPWNGHIFSLVPEMRLNYIYNFSYVSNENESYFTYSLYNTSIISRMVIDISGQIKQYTWLESTQQWNLFWSQPRVQCDVYALCGAFATCDENYCTCLPAFEPKSLSEWNLGDNSGGCVRKTSLQCEGSNPSSRDNDGFLAMTNMALPKYAQFMGLGNADECRLTCLRYCSCTAFAYDSNGCSIWVGDLMNLQELSSGDSSGRTLYVKLALSEIHDDTNKNSNRAKGIIGGVVGGVVGTGILLTLLFFVMLRRRKRMLATGKLLEGFMVEFGYKDLQNATKNFSEKLGGSGFGSVFKGALADSSMVAVKKLEGISQGEKQFRTKVSIIGTMQHVNLVRPRGFCSEGTKRLLVYDYMPNRSLDFHLFGNNNSDVLGWKARYQIALGIARGLIYLHEKCEECIIHCDIKPENILLDADFCPKVADFGLAKLIGRDFRRILTNMKGSRGYLSPEWISRAAITAKSDVYSYGMMLFEVVSGRRNFDPSVDDQNTFFPTLAATVVNQDANVLTLLDPRLEGNADIEEVTEMIKVASWCVQENETQRPTMRQAVQILEGTLNVNLPPIPRFNQAVGNVMLESKDDQNGPSEIQKESTSEGESVKQKRANVSMRKLERKSGAKLSISFNGQAVGFFSCTRGVRQGVPLSPLLFCLAEEVISRGLEALVGTGRLTPIRATRTHFLSSHCLYADDILIFCQGTLVNMKNIMKLFEKYGQYSGQMVNANKSKFYSGAITLSRIHTISSITGFSHGSLPFTYLGVPLFKGKPKSIHFKPIVDRIMFKLSAWKGRLLTIMGRVQLINTVISSMLTYSFHVYKWPPNLLNEIAKGMRNFIWNGNWEQRKLCTVAWANICKPRAEGGLSVRDPSKVNQASLIFLTWKFLTSEEQWAQLYQNRKNLQEQDEDSSSSSTLTEPKSPQNPPNPLNFISIFINSTITDSFQQRLSEASSSSSKNRTNSAIQSANSSRSVTNSSTDHRGACRSEKKRDRSWIEPEKKESEATHA*