Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261610 | XP_013465039.1 | 85.593 | 236 | 6 | 2 | 1 | 208 | 1 | 236 | 8.06e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261610 | sp|Q8GZA8|ULT1_ARATH | 60.851 | 235 | 64 | 2 | 2 | 208 | 3 | 237 | 9.00e-101 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261610 | A0A072VAL1 | 85.593 | 236 | 6 | 2 | 1 | 208 | 1 | 236 | 3.85e-141 | 402 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0261610 | TF | ULT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261610 | MtrunA17_Chr2g0323881 | 85.593 | 236 | 6 | 2 | 1 | 208 | 1 | 236 | 7.41e-145 | 402 |
| Msa0261610 | MtrunA17_Chr4g0022491 | 67.797 | 236 | 48 | 2 | 1 | 208 | 4 | 239 | 5.07e-113 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261610 | AT4G28190.1 | 60.851 | 235 | 64 | 2 | 2 | 208 | 3 | 237 | 9.14e-102 | 294 |
| Msa0261610 | AT4G28190.2 | 53.759 | 266 | 64 | 2 | 2 | 208 | 3 | 268 | 3.31e-97 | 283 |
| Msa0261610 | AT2G20825.1 | 58.798 | 233 | 61 | 4 | 5 | 208 | 1 | 227 | 4.22e-93 | 271 |
Find 46 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCGGAACATTTCCAATT+TGG | 0.206984 | 2_2:+60059668 | None:intergenic |
| TGTTCAGTGATGAAGATTTA+AGG | 0.211470 | 2_2:-60060970 | Msa0261610:CDS |
| GGAAATGGAAGAACAATATC+TGG | 0.261820 | 2_2:-60059907 | Msa0261610:CDS |
| ATGCTTTAGCTGATCCAAAT+TGG | 0.269884 | 2_2:-60059682 | Msa0261610:CDS |
| GTGGCACGCCTGTCCATTAT+TGG | 0.286780 | 2_2:+60059790 | None:intergenic |
| ATTGATGGTGTGAAGAAAAT+TGG | 0.302647 | 2_2:-60060944 | Msa0261610:CDS |
| GCTGCGTTCGAGAAACATTC+TGG | 0.350781 | 2_2:-60059944 | Msa0261610:CDS |
| TGCACTTCTTGTGTGTGCTT+TGG | 0.357522 | 2_2:-60058694 | Msa0261610:CDS |
| GGTTCCCACAAATCCAATAA+TGG | 0.386744 | 2_2:-60059803 | Msa0261610:CDS |
| GTTCAGTGATGAAGATTTAA+GGG | 0.396746 | 2_2:-60060969 | Msa0261610:CDS |
| TTGCACTTGCCAGACTTGTA+TGG | 0.413290 | 2_2:-60058647 | Msa0261610:CDS |
| GAAGAGAAACAGCTAGGAAA+TGG | 0.415093 | 2_2:-60059922 | Msa0261610:CDS |
| GACATTCCTCTTTAGTTCTC+AGG | 0.425086 | 2_2:+60059717 | None:intergenic |
| CTGTCCATTATTGGATTTGT+GGG | 0.429490 | 2_2:+60059799 | None:intergenic |
| GTGATGCTGTTGGAAGGCTT+AGG | 0.446422 | 2_2:-60060877 | Msa0261610:CDS |
| TTTGATAGAAAATGTCAAAC+GGG | 0.447762 | 2_2:-60061018 | None:intergenic |
| TTGTAAAATCCATACAAGTC+TGG | 0.450441 | 2_2:+60058638 | None:intergenic |
| AATATCTGGGTAACAGTTGA+TGG | 0.450966 | 2_2:-60059893 | Msa0261610:CDS |
| CCTGTCCATTATTGGATTTG+TGG | 0.462739 | 2_2:+60059798 | None:intergenic |
| GATTGAACATACTTGTCATA+TGG | 0.463333 | 2_2:+60059644 | None:intergenic |
| CATGATATGAACTCAAGCTT+TGG | 0.464804 | 2_2:+60058609 | None:intergenic |
| TGATGCTGTTGGAAGGCTTA+GGG | 0.470994 | 2_2:-60060876 | Msa0261610:CDS |
| ATTGGATTTGTGGGAACCAT+TGG | 0.483851 | 2_2:+60059808 | None:intergenic |
| GAATGTTTCTCGAACGCAGC+AGG | 0.502251 | 2_2:+60059947 | None:intergenic |
| GAAGATTTAAGGGATATTGA+TGG | 0.527608 | 2_2:-60060959 | Msa0261610:CDS |
| AACGGGTTAGAGAGAGAAAG+TGG | 0.529218 | 2_2:-60061001 | Msa0261610:CDS |
| CATAGATATGGTGATGCTGT+TGG | 0.550066 | 2_2:-60060887 | Msa0261610:CDS |
| CCACAAATCCAATAATGGAC+AGG | 0.550482 | 2_2:-60059798 | Msa0261610:CDS |
| TGTGATGATGAAGAAGAAAG+AGG | 0.552017 | 2_2:-60058766 | Msa0261610:CDS |
| CAGCTAAAGCATCATGGTGA+CGG | 0.575142 | 2_2:+60059693 | None:intergenic |
| GAAATGGAAGAACAATATCT+GGG | 0.577525 | 2_2:-60059906 | Msa0261610:CDS |
| GTTCCGCCTGAGAACTAAAG+AGG | 0.578750 | 2_2:-60059723 | Msa0261610:CDS |
| TTGGATCAGCTAAAGCATCA+TGG | 0.592054 | 2_2:+60059687 | None:intergenic |
| ATACTTGTCATATGGAAGAT+CGG | 0.592135 | 2_2:+60059652 | None:intergenic |
| TAAATCTTCATCACTGAACA+TGG | 0.598934 | 2_2:+60060973 | None:intergenic |
| GGTTGTACTAGTCATAGATA+TGG | 0.606067 | 2_2:-60060899 | Msa0261610:CDS |
| ATTCTGGAAGAGAAACAGCT+AGG | 0.616300 | 2_2:-60059928 | Msa0261610:CDS |
| GGTAACAGTTGATGGCGAGA+AGG | 0.622326 | 2_2:-60059885 | Msa0261610:CDS |
| ACTCATTCTGCAGCATGCAA+AGG | 0.631904 | 2_2:-60058718 | Msa0261610:CDS |
| TACAGCAGATAAACTCGTCA+CGG | 0.635905 | 2_2:+60059768 | None:intergenic |
| ATTCCTCTTTAGTTCTCAGG+CGG | 0.652096 | 2_2:+60059720 | None:intergenic |
| GATATGGTGATGCTGTTGGA+AGG | 0.656454 | 2_2:-60060883 | Msa0261610:CDS |
| GGCAGTCGCAGAGTTTACAG+AGG | 0.678401 | 2_2:-60058745 | Msa0261610:CDS |
| GAATGTATTGAAGTGATGTG+TGG | 0.698821 | 2_2:-60060920 | Msa0261610:CDS |
| ACGGGTTAGAGAGAGAAAGT+GGG | 0.717955 | 2_2:-60061000 | Msa0261610:CDS |
| AGCAGATAAACTCGTCACGG+TGG | 0.722161 | 2_2:+60059771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCTCTTATTATTAAAAA+TGG | - | chr2_2:60058984-60059003 | Msa0261610:intron | 10.0% |
| !! | ATTCTCTTATTATTAAAAAT+GGG | - | chr2_2:60058985-60059004 | Msa0261610:intron | 10.0% |
| !! | TATTCTCTTATTATTAAAAA+TGG | - | chr2_2:60058984-60059003 | Msa0261610:intron | 10.0% |
| !! | ATTCTCTTATTATTAAAAAT+GGG | - | chr2_2:60058985-60059004 | Msa0261610:intron | 10.0% |
| !! | AAAGATATAATAGATAGATA+AGG | + | chr2_2:60058837-60058856 | None:intergenic | 15.0% |
| !! | TTCTCTTATTATTAAAAATG+GGG | - | chr2_2:60058986-60059005 | Msa0261610:intron | 15.0% |
| !!! | TGTTTTGTTTCATTTAATAT+TGG | - | chr2_2:60059080-60059099 | Msa0261610:intron | 15.0% |
| !! | TAAAAAACATAGTGAAAATT+AGG | + | chr2_2:60059642-60059661 | None:intergenic | 15.0% |
| !! | TCTATAAATTTATGTATTGA+AGG | - | chr2_2:60060099-60060118 | Msa0261610:intron | 15.0% |
| !! | AAAGATATAATAGATAGATA+AGG | + | chr2_2:60058837-60058856 | None:intergenic | 15.0% |
| !! | TTCTCTTATTATTAAAAATG+GGG | - | chr2_2:60058986-60059005 | Msa0261610:intron | 15.0% |
| !!! | TGTTTTGTTTCATTTAATAT+TGG | - | chr2_2:60059080-60059099 | Msa0261610:intron | 15.0% |
| !! | TAAAAAACATAGTGAAAATT+AGG | + | chr2_2:60059642-60059661 | None:intergenic | 15.0% |
| !! | TCTATAAATTTATGTATTGA+AGG | - | chr2_2:60060099-60060118 | Msa0261610:intron | 15.0% |
| !! | TTATCAAAAACTTAATGCAT+TGG | + | chr2_2:60059279-60059298 | None:intergenic | 20.0% |
| !! | TGAAGGTAAATAATTAAACT+TGG | + | chr2_2:60059553-60059572 | None:intergenic | 20.0% |
| !! | AAAAATTATCACAAGAAAAG+GGG | + | chr2_2:60060054-60060073 | None:intergenic | 20.0% |
| !! | CAAAAATTATCACAAGAAAA+GGG | + | chr2_2:60060055-60060074 | None:intergenic | 20.0% |
| !! | ACAAAAATTATCACAAGAAA+AGG | + | chr2_2:60060056-60060075 | None:intergenic | 20.0% |
| !! | ATAGATAAACAAAAGTTACT+TGG | + | chr2_2:60060084-60060103 | None:intergenic | 20.0% |
| !! | TAATACTAGAACTAGAATAA+TGG | + | chr2_2:60060181-60060200 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTTGCCATTT+AGG | + | chr2_2:60060659-60060678 | None:intergenic | 20.0% |
| !!! | ACTTTTCAACTTTTTTACAA+TGG | - | chr2_2:60060771-60060790 | Msa0261610:intron | 20.0% |
| !! | TTATCAAAAACTTAATGCAT+TGG | + | chr2_2:60059279-60059298 | None:intergenic | 20.0% |
| !! | TGAAGGTAAATAATTAAACT+TGG | + | chr2_2:60059553-60059572 | None:intergenic | 20.0% |
| !! | AAAAATTATCACAAGAAAAG+GGG | + | chr2_2:60060054-60060073 | None:intergenic | 20.0% |
| !! | CAAAAATTATCACAAGAAAA+GGG | + | chr2_2:60060055-60060074 | None:intergenic | 20.0% |
| !! | ACAAAAATTATCACAAGAAA+AGG | + | chr2_2:60060056-60060075 | None:intergenic | 20.0% |
| !! | ATAGATAAACAAAAGTTACT+TGG | + | chr2_2:60060084-60060103 | None:intergenic | 20.0% |
| !! | TAATACTAGAACTAGAATAA+TGG | + | chr2_2:60060181-60060200 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTTGCCATTT+AGG | + | chr2_2:60060659-60060678 | None:intergenic | 20.0% |
| !!! | ACTTTTCAACTTTTTTACAA+TGG | - | chr2_2:60060771-60060790 | Msa0261610:intron | 20.0% |
| ! | ATTTGTCAAAGTGAAAACTT+TGG | - | chr2_2:60059213-60059232 | Msa0261610:intron | 25.0% |
| !! | AAAGTCAATGAAATCTGTTT+TGG | - | chr2_2:60059331-60059350 | Msa0261610:intron | 25.0% |
| ! | TTATGTAAGGTTCTACTATA+AGG | - | chr2_2:60059358-60059377 | Msa0261610:intron | 25.0% |
| ! | TTGCTTTAATTCTTAGAATG+TGG | - | chr2_2:60059413-60059432 | Msa0261610:intron | 25.0% |
| !! | ACTAGTTTAAAACAGATAGA+GGG | + | chr2_2:60059469-60059488 | None:intergenic | 25.0% |
| !! | AACTAGTTTAAAACAGATAG+AGG | + | chr2_2:60059470-60059489 | None:intergenic | 25.0% |
| !!! | AGCATTTTGATTCAAAATGA+AGG | + | chr2_2:60059570-60059589 | None:intergenic | 25.0% |
| ! | AATTTATGTATTGAAGGCAA+TGG | - | chr2_2:60060105-60060124 | Msa0261610:intron | 25.0% |
| ! | TTGTCAAAACACTAAATTCT+CGG | + | chr2_2:60060271-60060290 | None:intergenic | 25.0% |
| !!! | TGTTTTGACAATGCAAATTT+AGG | - | chr2_2:60060280-60060299 | Msa0261610:intron | 25.0% |
| !!! | GTTTTGACAATGCAAATTTA+GGG | - | chr2_2:60060281-60060300 | Msa0261610:intron | 25.0% |
| !! | ACCTTTAAAAAAGTAGTAGT+TGG | - | chr2_2:60060377-60060396 | Msa0261610:intron | 25.0% |
| !!! | ACCAACTACTACTTTTTTAA+AGG | + | chr2_2:60060381-60060400 | None:intergenic | 25.0% |
| ! | GTGAGACATTTAAACAAATT+CGG | + | chr2_2:60060558-60060577 | None:intergenic | 25.0% |
| !! | ATTGCATTTTGAATCCTAAA+TGG | - | chr2_2:60060642-60060661 | Msa0261610:intron | 25.0% |
| ! | ATTTGTCAAAGTGAAAACTT+TGG | - | chr2_2:60059213-60059232 | Msa0261610:intron | 25.0% |
| !! | AAAGTCAATGAAATCTGTTT+TGG | - | chr2_2:60059331-60059350 | Msa0261610:intron | 25.0% |
| ! | TTATGTAAGGTTCTACTATA+AGG | - | chr2_2:60059358-60059377 | Msa0261610:intron | 25.0% |
| ! | TTGCTTTAATTCTTAGAATG+TGG | - | chr2_2:60059413-60059432 | Msa0261610:intron | 25.0% |
| !! | ACTAGTTTAAAACAGATAGA+GGG | + | chr2_2:60059469-60059488 | None:intergenic | 25.0% |
| !! | AACTAGTTTAAAACAGATAG+AGG | + | chr2_2:60059470-60059489 | None:intergenic | 25.0% |
| !!! | AGCATTTTGATTCAAAATGA+AGG | + | chr2_2:60059570-60059589 | None:intergenic | 25.0% |
| ! | AATTTATGTATTGAAGGCAA+TGG | - | chr2_2:60060105-60060124 | Msa0261610:intron | 25.0% |
| ! | TTGTCAAAACACTAAATTCT+CGG | + | chr2_2:60060271-60060290 | None:intergenic | 25.0% |
| !!! | TGTTTTGACAATGCAAATTT+AGG | - | chr2_2:60060280-60060299 | Msa0261610:intron | 25.0% |
| !!! | GTTTTGACAATGCAAATTTA+GGG | - | chr2_2:60060281-60060300 | Msa0261610:intron | 25.0% |
| !! | ACCTTTAAAAAAGTAGTAGT+TGG | - | chr2_2:60060377-60060396 | Msa0261610:intron | 25.0% |
| !!! | ACCAACTACTACTTTTTTAA+AGG | + | chr2_2:60060381-60060400 | None:intergenic | 25.0% |
| ! | GTGAGACATTTAAACAAATT+CGG | + | chr2_2:60060558-60060577 | None:intergenic | 25.0% |
| !! | ATTGCATTTTGAATCCTAAA+TGG | - | chr2_2:60060642-60060661 | Msa0261610:intron | 25.0% |
| TAAATCTTCATCACTGAACA+TGG | + | chr2_2:60058658-60058677 | None:intergenic | 30.0% | |
| TGTTCAGTGATGAAGATTTA+AGG | - | chr2_2:60058658-60058677 | Msa0261610:CDS | 30.0% | |
| GTTCAGTGATGAAGATTTAA+GGG | - | chr2_2:60058659-60058678 | Msa0261610:CDS | 30.0% | |
| GAAGATTTAAGGGATATTGA+TGG | - | chr2_2:60058669-60058688 | Msa0261610:CDS | 30.0% | |
| !! | ATTGATGGTGTGAAGAAAAT+TGG | - | chr2_2:60058684-60058703 | Msa0261610:CDS | 30.0% |
| ATTACATGATTCTAGACAAG+TGG | - | chr2_2:60059238-60059257 | Msa0261610:intron | 30.0% | |
| !!! | AAGCATGTTATGTTGACTTT+TGG | - | chr2_2:60059301-60059320 | Msa0261610:intron | 30.0% |
| !!! | CTGTTTTGGTTTGTTATGTA+AGG | - | chr2_2:60059345-60059364 | Msa0261610:intron | 30.0% |
| GATAGAGGGAAATATAAACA+TGG | + | chr2_2:60059455-60059474 | None:intergenic | 30.0% | |
| GAAACAAGTTATAATTCGCT+TGG | + | chr2_2:60059531-60059550 | None:intergenic | 30.0% | |
| GTGAAAATTAGGTCAGATTT+AGG | + | chr2_2:60059631-60059650 | None:intergenic | 30.0% | |
| GAAATGGAAGAACAATATCT+GGG | - | chr2_2:60059722-60059741 | Msa0261610:CDS | 30.0% | |
| ! | GCAGAACTGTTTTATACAAT+GGG | + | chr2_2:60059770-60059789 | None:intergenic | 30.0% |
| ! | AGCAGAACTGTTTTATACAA+TGG | + | chr2_2:60059771-60059790 | None:intergenic | 30.0% |
| ATACTTGTCATATGGAAGAT+CGG | + | chr2_2:60059979-60059998 | None:intergenic | 30.0% | |
| GATTGAACATACTTGTCATA+TGG | + | chr2_2:60059987-60060006 | None:intergenic | 30.0% | |
| AAGTATGTTCAATCTGTTGT+AGG | - | chr2_2:60059993-60060012 | Msa0261610:intron | 30.0% | |
| TGAAGATATAACTTGGAAAG+TGG | + | chr2_2:60060137-60060156 | None:intergenic | 30.0% | |
| ATGTGGTTGAAGATATAACT+TGG | + | chr2_2:60060144-60060163 | None:intergenic | 30.0% | |
| TTTAAAGGTAGAACCAAGAT+TGG | + | chr2_2:60060366-60060385 | None:intergenic | 30.0% | |
| GTTACATTACCTATTATGCA+TGG | - | chr2_2:60060460-60060479 | Msa0261610:intron | 30.0% | |
| TTAAATCAGCCATGCATAAT+AGG | + | chr2_2:60060472-60060491 | None:intergenic | 30.0% | |
| ! | ATGGCTGATTTAAATATGCA+TGG | - | chr2_2:60060479-60060498 | Msa0261610:intron | 30.0% |
| CAAATTCGGACAAACATAAA+AGG | + | chr2_2:60060544-60060563 | None:intergenic | 30.0% | |
| TTGTAAAATCCATACAAGTC+TGG | + | chr2_2:60060993-60061012 | None:intergenic | 30.0% | |
| ! | AGACTTGTATGGATTTTACA+AGG | - | chr2_2:60060992-60061011 | Msa0261610:CDS | 30.0% |
| TAAATCTTCATCACTGAACA+TGG | + | chr2_2:60058658-60058677 | None:intergenic | 30.0% | |
| TGTTCAGTGATGAAGATTTA+AGG | - | chr2_2:60058658-60058677 | Msa0261610:CDS | 30.0% | |
| GTTCAGTGATGAAGATTTAA+GGG | - | chr2_2:60058659-60058678 | Msa0261610:CDS | 30.0% | |
| GAAGATTTAAGGGATATTGA+TGG | - | chr2_2:60058669-60058688 | Msa0261610:CDS | 30.0% | |
| !! | ATTGATGGTGTGAAGAAAAT+TGG | - | chr2_2:60058684-60058703 | Msa0261610:CDS | 30.0% |
| ATTACATGATTCTAGACAAG+TGG | - | chr2_2:60059238-60059257 | Msa0261610:intron | 30.0% | |
| !!! | AAGCATGTTATGTTGACTTT+TGG | - | chr2_2:60059301-60059320 | Msa0261610:intron | 30.0% |
| !!! | CTGTTTTGGTTTGTTATGTA+AGG | - | chr2_2:60059345-60059364 | Msa0261610:intron | 30.0% |
| GATAGAGGGAAATATAAACA+TGG | + | chr2_2:60059455-60059474 | None:intergenic | 30.0% | |
| GAAACAAGTTATAATTCGCT+TGG | + | chr2_2:60059531-60059550 | None:intergenic | 30.0% | |
| GTGAAAATTAGGTCAGATTT+AGG | + | chr2_2:60059631-60059650 | None:intergenic | 30.0% | |
| GAAATGGAAGAACAATATCT+GGG | - | chr2_2:60059722-60059741 | Msa0261610:CDS | 30.0% | |
| ! | GCAGAACTGTTTTATACAAT+GGG | + | chr2_2:60059770-60059789 | None:intergenic | 30.0% |
| ! | AGCAGAACTGTTTTATACAA+TGG | + | chr2_2:60059771-60059790 | None:intergenic | 30.0% |
| ATACTTGTCATATGGAAGAT+CGG | + | chr2_2:60059979-60059998 | None:intergenic | 30.0% | |
| GATTGAACATACTTGTCATA+TGG | + | chr2_2:60059987-60060006 | None:intergenic | 30.0% | |
| AAGTATGTTCAATCTGTTGT+AGG | - | chr2_2:60059993-60060012 | Msa0261610:intron | 30.0% | |
| TGAAGATATAACTTGGAAAG+TGG | + | chr2_2:60060137-60060156 | None:intergenic | 30.0% | |
| ATGTGGTTGAAGATATAACT+TGG | + | chr2_2:60060144-60060163 | None:intergenic | 30.0% | |
| TTTAAAGGTAGAACCAAGAT+TGG | + | chr2_2:60060366-60060385 | None:intergenic | 30.0% | |
| GTTACATTACCTATTATGCA+TGG | - | chr2_2:60060460-60060479 | Msa0261610:intron | 30.0% | |
| TTAAATCAGCCATGCATAAT+AGG | + | chr2_2:60060472-60060491 | None:intergenic | 30.0% | |
| ! | ATGGCTGATTTAAATATGCA+TGG | - | chr2_2:60060479-60060498 | Msa0261610:intron | 30.0% |
| CAAATTCGGACAAACATAAA+AGG | + | chr2_2:60060544-60060563 | None:intergenic | 30.0% | |
| TTGTAAAATCCATACAAGTC+TGG | + | chr2_2:60060993-60061012 | None:intergenic | 30.0% | |
| ! | AGACTTGTATGGATTTTACA+AGG | - | chr2_2:60060992-60061011 | Msa0261610:CDS | 30.0% |
| GAATGTATTGAAGTGATGTG+TGG | - | chr2_2:60058708-60058727 | Msa0261610:CDS | 35.0% | |
| GGTTGTACTAGTCATAGATA+TGG | - | chr2_2:60058729-60058748 | Msa0261610:CDS | 35.0% | |
| TGTTAGTGTAGTGTTAGTGT+CGG | + | chr2_2:60058905-60058924 | None:intergenic | 35.0% | |
| AGAGAATATAAAACGCGACA+CGG | + | chr2_2:60058972-60058991 | None:intergenic | 35.0% | |
| TTAATATTGGCACGTGTCAT+TGG | - | chr2_2:60059093-60059112 | Msa0261610:intron | 35.0% | |
| !!! | TGGATGGTTGTTTTAATGTG+TGG | - | chr2_2:60059121-60059140 | Msa0261610:intron | 35.0% |
| TATGAACTCTGTTGTGATGT+TGG | - | chr2_2:60059164-60059183 | Msa0261610:intron | 35.0% | |
| AATTCTTAGAATGTGGCTAG+TGG | - | chr2_2:60059420-60059439 | Msa0261610:intron | 35.0% | |
| GGAAATGGAAGAACAATATC+TGG | - | chr2_2:60059721-60059740 | Msa0261610:CDS | 35.0% | |
| AATATCTGGGTAACAGTTGA+TGG | - | chr2_2:60059735-60059754 | Msa0261610:intron | 35.0% | |
| CAAGCATTAAAAACAGCCAA+TGG | - | chr2_2:60059804-60059823 | Msa0261610:CDS | 35.0% | |
| CTGTCCATTATTGGATTTGT+GGG | + | chr2_2:60059832-60059851 | None:intergenic | 35.0% | |
| ATGCTTTAGCTGATCCAAAT+TGG | - | chr2_2:60059946-60059965 | Msa0261610:CDS | 35.0% | |
| AGATCGGAACATTTCCAATT+TGG | + | chr2_2:60059963-60059982 | None:intergenic | 35.0% | |
| ! | TTCATTGATTGCTGCATGAA+TGG | - | chr2_2:60060336-60060355 | Msa0261610:intron | 35.0% |
| TAACCATGACAGTTCTTTCA+GGG | + | chr2_2:60060444-60060463 | None:intergenic | 35.0% | |
| GTAACTGTGATAGTTCTTTG+AGG | + | chr2_2:60060517-60060536 | None:intergenic | 35.0% | |
| TCTGTACAGAAGATTCAAGT+TGG | - | chr2_2:60060685-60060704 | Msa0261610:intron | 35.0% | |
| ! | CTGTACAGAAGATTCAAGTT+GGG | - | chr2_2:60060686-60060705 | Msa0261610:intron | 35.0% |
| !! | TGTACAGAAGATTCAAGTTG+GGG | - | chr2_2:60060687-60060706 | Msa0261610:intron | 35.0% |
| ! | TGTGATGATGAAGAAGAAAG+AGG | - | chr2_2:60060862-60060881 | Msa0261610:intron | 35.0% |
| GAATGTATTGAAGTGATGTG+TGG | - | chr2_2:60058708-60058727 | Msa0261610:CDS | 35.0% | |
| GGTTGTACTAGTCATAGATA+TGG | - | chr2_2:60058729-60058748 | Msa0261610:CDS | 35.0% | |
| TGTTAGTGTAGTGTTAGTGT+CGG | + | chr2_2:60058905-60058924 | None:intergenic | 35.0% | |
| AGAGAATATAAAACGCGACA+CGG | + | chr2_2:60058972-60058991 | None:intergenic | 35.0% | |
| TTAATATTGGCACGTGTCAT+TGG | - | chr2_2:60059093-60059112 | Msa0261610:intron | 35.0% | |
| !!! | TGGATGGTTGTTTTAATGTG+TGG | - | chr2_2:60059121-60059140 | Msa0261610:intron | 35.0% |
| TATGAACTCTGTTGTGATGT+TGG | - | chr2_2:60059164-60059183 | Msa0261610:intron | 35.0% | |
| AATTCTTAGAATGTGGCTAG+TGG | - | chr2_2:60059420-60059439 | Msa0261610:intron | 35.0% | |
| GGAAATGGAAGAACAATATC+TGG | - | chr2_2:60059721-60059740 | Msa0261610:CDS | 35.0% | |
| AATATCTGGGTAACAGTTGA+TGG | - | chr2_2:60059735-60059754 | Msa0261610:intron | 35.0% | |
| CAAGCATTAAAAACAGCCAA+TGG | - | chr2_2:60059804-60059823 | Msa0261610:CDS | 35.0% | |
| CTGTCCATTATTGGATTTGT+GGG | + | chr2_2:60059832-60059851 | None:intergenic | 35.0% | |
| ATGCTTTAGCTGATCCAAAT+TGG | - | chr2_2:60059946-60059965 | Msa0261610:CDS | 35.0% | |
| AGATCGGAACATTTCCAATT+TGG | + | chr2_2:60059963-60059982 | None:intergenic | 35.0% | |
| ! | TTCATTGATTGCTGCATGAA+TGG | - | chr2_2:60060336-60060355 | Msa0261610:intron | 35.0% |
| TAACCATGACAGTTCTTTCA+GGG | + | chr2_2:60060444-60060463 | None:intergenic | 35.0% | |
| GTAACTGTGATAGTTCTTTG+AGG | + | chr2_2:60060517-60060536 | None:intergenic | 35.0% | |
| TCTGTACAGAAGATTCAAGT+TGG | - | chr2_2:60060685-60060704 | Msa0261610:intron | 35.0% | |
| ! | CTGTACAGAAGATTCAAGTT+GGG | - | chr2_2:60060686-60060705 | Msa0261610:intron | 35.0% |
| !! | TGTACAGAAGATTCAAGTTG+GGG | - | chr2_2:60060687-60060706 | Msa0261610:intron | 35.0% |
| ! | TGTGATGATGAAGAAGAAAG+AGG | - | chr2_2:60060862-60060881 | Msa0261610:intron | 35.0% |
| ! | CATAGATATGGTGATGCTGT+TGG | - | chr2_2:60058741-60058760 | Msa0261610:CDS | 40.0% |
| ! | AGGCTTAGGGTTTTTGTTAG+TGG | - | chr2_2:60058765-60058784 | Msa0261610:CDS | 40.0% |
| ATTACTTGTGAATGCATCCC+TGG | - | chr2_2:60058798-60058817 | Msa0261610:intron | 40.0% | |
| ! | TCGAGTATGAGTGTTGTGTT+CGG | - | chr2_2:60058943-60058962 | Msa0261610:intron | 40.0% |
| ! | ATTCTGGAAGAGAAACAGCT+AGG | - | chr2_2:60059700-60059719 | Msa0261610:CDS | 40.0% |
| GAAGAGAAACAGCTAGGAAA+TGG | - | chr2_2:60059706-60059725 | Msa0261610:CDS | 40.0% | |
| ATTGGATTTGTGGGAACCAT+TGG | + | chr2_2:60059823-60059842 | None:intergenic | 40.0% | |
| GGTTCCCACAAATCCAATAA+TGG | - | chr2_2:60059825-60059844 | Msa0261610:CDS | 40.0% | |
| CCTGTCCATTATTGGATTTG+TGG | + | chr2_2:60059833-60059852 | None:intergenic | 40.0% | |
| !! | CCACAAATCCAATAATGGAC+AGG | - | chr2_2:60059830-60059849 | Msa0261610:CDS | 40.0% |
| TACAGCAGATAAACTCGTCA+CGG | + | chr2_2:60059863-60059882 | None:intergenic | 40.0% | |
| !! | ATTCCTCTTTAGTTCTCAGG+CGG | + | chr2_2:60059911-60059930 | None:intergenic | 40.0% |
| !! | GACATTCCTCTTTAGTTCTC+AGG | + | chr2_2:60059914-60059933 | None:intergenic | 40.0% |
| ! | TTGGATCAGCTAAAGCATCA+TGG | + | chr2_2:60059944-60059963 | None:intergenic | 40.0% |
| TTATCACAAGAAAAGGGGCT+AGG | + | chr2_2:60060049-60060068 | None:intergenic | 40.0% | |
| CAACCACATTGTAGTAACTC+TGG | - | chr2_2:60060155-60060174 | Msa0261610:intron | 40.0% | |
| CATGAATGGTGTTCCAATCT+TGG | - | chr2_2:60060350-60060369 | Msa0261610:intron | 40.0% | |
| GTAACCATGACAGTTCTTTC+AGG | + | chr2_2:60060445-60060464 | None:intergenic | 40.0% | |
| GGCAAGTGCAATCTGAAAAA+CGG | + | chr2_2:60060972-60060991 | None:intergenic | 40.0% | |
| ! | CATAGATATGGTGATGCTGT+TGG | - | chr2_2:60058741-60058760 | Msa0261610:CDS | 40.0% |
| ! | AGGCTTAGGGTTTTTGTTAG+TGG | - | chr2_2:60058765-60058784 | Msa0261610:CDS | 40.0% |
| ATTACTTGTGAATGCATCCC+TGG | - | chr2_2:60058798-60058817 | Msa0261610:intron | 40.0% | |
| ! | TCGAGTATGAGTGTTGTGTT+CGG | - | chr2_2:60058943-60058962 | Msa0261610:intron | 40.0% |
| ! | ATTCTGGAAGAGAAACAGCT+AGG | - | chr2_2:60059700-60059719 | Msa0261610:CDS | 40.0% |
| GAAGAGAAACAGCTAGGAAA+TGG | - | chr2_2:60059706-60059725 | Msa0261610:CDS | 40.0% | |
| ATTGGATTTGTGGGAACCAT+TGG | + | chr2_2:60059823-60059842 | None:intergenic | 40.0% | |
| GGTTCCCACAAATCCAATAA+TGG | - | chr2_2:60059825-60059844 | Msa0261610:CDS | 40.0% | |
| CCTGTCCATTATTGGATTTG+TGG | + | chr2_2:60059833-60059852 | None:intergenic | 40.0% | |
| !! | CCACAAATCCAATAATGGAC+AGG | - | chr2_2:60059830-60059849 | Msa0261610:CDS | 40.0% |
| TACAGCAGATAAACTCGTCA+CGG | + | chr2_2:60059863-60059882 | None:intergenic | 40.0% | |
| !! | ATTCCTCTTTAGTTCTCAGG+CGG | + | chr2_2:60059911-60059930 | None:intergenic | 40.0% |
| !! | GACATTCCTCTTTAGTTCTC+AGG | + | chr2_2:60059914-60059933 | None:intergenic | 40.0% |
| ! | TTGGATCAGCTAAAGCATCA+TGG | + | chr2_2:60059944-60059963 | None:intergenic | 40.0% |
| TTATCACAAGAAAAGGGGCT+AGG | + | chr2_2:60060049-60060068 | None:intergenic | 40.0% | |
| CAACCACATTGTAGTAACTC+TGG | - | chr2_2:60060155-60060174 | Msa0261610:intron | 40.0% | |
| CATGAATGGTGTTCCAATCT+TGG | - | chr2_2:60060350-60060369 | Msa0261610:intron | 40.0% | |
| GTAACCATGACAGTTCTTTC+AGG | + | chr2_2:60060445-60060464 | None:intergenic | 40.0% | |
| GGCAAGTGCAATCTGAAAAA+CGG | + | chr2_2:60060972-60060991 | None:intergenic | 40.0% | |
| !! | AACGGGTTAGAGAGAGAAAG+TGG | - | chr2_2:60058627-60058646 | Msa0261610:CDS | 45.0% |
| !! | ACGGGTTAGAGAGAGAAAGT+GGG | - | chr2_2:60058628-60058647 | Msa0261610:CDS | 45.0% |
| ! | GATATGGTGATGCTGTTGGA+AGG | - | chr2_2:60058745-60058764 | Msa0261610:CDS | 45.0% |
| TGATGCTGTTGGAAGGCTTA+GGG | - | chr2_2:60058752-60058771 | Msa0261610:CDS | 45.0% | |
| ! | CTAGATGTAACAAAGAGCGC+AGG | - | chr2_2:60059883-60059902 | Msa0261610:CDS | 45.0% |
| ! | CAGCTAAAGCATCATGGTGA+CGG | + | chr2_2:60059938-60059957 | None:intergenic | 45.0% |
| TGGCCAGAGTTACTACAATG+TGG | + | chr2_2:60060161-60060180 | None:intergenic | 45.0% | |
| ACTCATTCTGCAGCATGCAA+AGG | - | chr2_2:60060910-60060929 | Msa0261610:CDS | 45.0% | |
| TGCACTTCTTGTGTGTGCTT+TGG | - | chr2_2:60060934-60060953 | Msa0261610:CDS | 45.0% | |
| TTGCACTTGCCAGACTTGTA+TGG | - | chr2_2:60060981-60061000 | Msa0261610:CDS | 45.0% | |
| !! | AACGGGTTAGAGAGAGAAAG+TGG | - | chr2_2:60058627-60058646 | Msa0261610:CDS | 45.0% |
| !! | ACGGGTTAGAGAGAGAAAGT+GGG | - | chr2_2:60058628-60058647 | Msa0261610:CDS | 45.0% |
| ! | GATATGGTGATGCTGTTGGA+AGG | - | chr2_2:60058745-60058764 | Msa0261610:CDS | 45.0% |
| TGATGCTGTTGGAAGGCTTA+GGG | - | chr2_2:60058752-60058771 | Msa0261610:CDS | 45.0% | |
| ! | CTAGATGTAACAAAGAGCGC+AGG | - | chr2_2:60059883-60059902 | Msa0261610:CDS | 45.0% |
| ! | CAGCTAAAGCATCATGGTGA+CGG | + | chr2_2:60059938-60059957 | None:intergenic | 45.0% |
| TGGCCAGAGTTACTACAATG+TGG | + | chr2_2:60060161-60060180 | None:intergenic | 45.0% | |
| ACTCATTCTGCAGCATGCAA+AGG | - | chr2_2:60060910-60060929 | Msa0261610:CDS | 45.0% | |
| TGCACTTCTTGTGTGTGCTT+TGG | - | chr2_2:60060934-60060953 | Msa0261610:CDS | 45.0% | |
| TTGCACTTGCCAGACTTGTA+TGG | - | chr2_2:60060981-60061000 | Msa0261610:CDS | 45.0% | |
| GTGATGCTGTTGGAAGGCTT+AGG | - | chr2_2:60058751-60058770 | Msa0261610:CDS | 50.0% | |
| AAGGACCTTCTTCACAGCCA+GGG | + | chr2_2:60058818-60058837 | None:intergenic | 50.0% | |
| TAAGGACCTTCTTCACAGCC+AGG | + | chr2_2:60058819-60058838 | None:intergenic | 50.0% | |
| ! | CGTGTCATTGGCACATTGGA+TGG | - | chr2_2:60059105-60059124 | Msa0261610:intron | 50.0% |
| GCAGGAGTCAACTTGTCTGT+TGG | + | chr2_2:60059666-60059685 | None:intergenic | 50.0% | |
| GAATGTTTCTCGAACGCAGC+AGG | + | chr2_2:60059684-60059703 | None:intergenic | 50.0% | |
| GCTGCGTTCGAGAAACATTC+TGG | - | chr2_2:60059684-60059703 | Msa0261610:CDS | 50.0% | |
| !! | GGTAACAGTTGATGGCGAGA+AGG | - | chr2_2:60059743-60059762 | Msa0261610:intron | 50.0% |
| AGCAGATAAACTCGTCACGG+TGG | + | chr2_2:60059860-60059879 | None:intergenic | 50.0% | |
| GTTCCGCCTGAGAACTAAAG+AGG | - | chr2_2:60059905-60059924 | Msa0261610:CDS | 50.0% | |
| CAAGAAAAGGGGCTAGGCAA+GGG | + | chr2_2:60060043-60060062 | None:intergenic | 50.0% | |
| ACAAGAAAAGGGGCTAGGCA+AGG | + | chr2_2:60060044-60060063 | None:intergenic | 50.0% | |
| CAGCCCTGAAAGAACTGTCA+TGG | - | chr2_2:60060438-60060457 | Msa0261610:intron | 50.0% | |
| GTGATGCTGTTGGAAGGCTT+AGG | - | chr2_2:60058751-60058770 | Msa0261610:CDS | 50.0% | |
| AAGGACCTTCTTCACAGCCA+GGG | + | chr2_2:60058818-60058837 | None:intergenic | 50.0% | |
| TAAGGACCTTCTTCACAGCC+AGG | + | chr2_2:60058819-60058838 | None:intergenic | 50.0% | |
| ! | CGTGTCATTGGCACATTGGA+TGG | - | chr2_2:60059105-60059124 | Msa0261610:intron | 50.0% |
| GCAGGAGTCAACTTGTCTGT+TGG | + | chr2_2:60059666-60059685 | None:intergenic | 50.0% | |
| GAATGTTTCTCGAACGCAGC+AGG | + | chr2_2:60059684-60059703 | None:intergenic | 50.0% | |
| GCTGCGTTCGAGAAACATTC+TGG | - | chr2_2:60059684-60059703 | Msa0261610:CDS | 50.0% | |
| !! | GGTAACAGTTGATGGCGAGA+AGG | - | chr2_2:60059743-60059762 | Msa0261610:intron | 50.0% |
| AGCAGATAAACTCGTCACGG+TGG | + | chr2_2:60059860-60059879 | None:intergenic | 50.0% | |
| GTTCCGCCTGAGAACTAAAG+AGG | - | chr2_2:60059905-60059924 | Msa0261610:CDS | 50.0% | |
| CAAGAAAAGGGGCTAGGCAA+GGG | + | chr2_2:60060043-60060062 | None:intergenic | 50.0% | |
| ACAAGAAAAGGGGCTAGGCA+AGG | + | chr2_2:60060044-60060063 | None:intergenic | 50.0% | |
| CAGCCCTGAAAGAACTGTCA+TGG | - | chr2_2:60060438-60060457 | Msa0261610:intron | 50.0% | |
| TGCATCCCTGGCTGTGAAGA+AGG | - | chr2_2:60058810-60058829 | Msa0261610:intron | 55.0% | |
| ! | GGCACGTGTCATTGGCACAT+TGG | - | chr2_2:60059101-60059120 | Msa0261610:intron | 55.0% |
| GTGGCACGCCTGTCCATTAT+TGG | + | chr2_2:60059841-60059860 | None:intergenic | 55.0% | |
| GGCAGTCGCAGAGTTTACAG+AGG | - | chr2_2:60060883-60060902 | Msa0261610:CDS | 55.0% | |
| TGCATCCCTGGCTGTGAAGA+AGG | - | chr2_2:60058810-60058829 | Msa0261610:intron | 55.0% | |
| ! | GGCACGTGTCATTGGCACAT+TGG | - | chr2_2:60059101-60059120 | Msa0261610:intron | 55.0% |
| GTGGCACGCCTGTCCATTAT+TGG | + | chr2_2:60059841-60059860 | None:intergenic | 55.0% | |
| GGCAGTCGCAGAGTTTACAG+AGG | - | chr2_2:60060883-60060902 | Msa0261610:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60058621 | 60061029 | 60058621 | ID=Msa0261610;Name=Msa0261610 |
| chr2_2 | mRNA | 60058621 | 60061029 | 60058621 | ID=Msa0261610-mRNA-1;Parent=Msa0261610;Name=Msa0261610-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0|4|0|208 |
| chr2_2 | exon | 60060867 | 60061029 | 60060867 | ID=Msa0261610-mRNA-1:exon:18488;Parent=Msa0261610-mRNA-1 |
| chr2_2 | exon | 60059782 | 60059980 | 60059782 | ID=Msa0261610-mRNA-1:exon:18487;Parent=Msa0261610-mRNA-1 |
| chr2_2 | exon | 60059656 | 60059745 | 60059656 | ID=Msa0261610-mRNA-1:exon:18486;Parent=Msa0261610-mRNA-1 |
| chr2_2 | exon | 60058621 | 60058795 | 60058621 | ID=Msa0261610-mRNA-1:exon:18485;Parent=Msa0261610-mRNA-1 |
| chr2_2 | CDS | 60060867 | 60061029 | 60060867 | ID=Msa0261610-mRNA-1:cds;Parent=Msa0261610-mRNA-1 |
| chr2_2 | CDS | 60059782 | 60059980 | 60059782 | ID=Msa0261610-mRNA-1:cds;Parent=Msa0261610-mRNA-1 |
| chr2_2 | CDS | 60059656 | 60059745 | 60059656 | ID=Msa0261610-mRNA-1:cds;Parent=Msa0261610-mRNA-1 |
| chr2_2 | CDS | 60058621 | 60058795 | 60058621 | ID=Msa0261610-mRNA-1:cds;Parent=Msa0261610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
