Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262140 | XP_039687055.1 | 47.867 | 211 | 57 | 3 | 1 | 158 | 1 | 211 | 2.42e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262140 | A0A072VCG2 | 47.867 | 211 | 57 | 3 | 1 | 158 | 1 | 211 | 1.16e-44 | 155 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0262140 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262140 | MtrunA17_Chr2g0324511 | 68.116 | 69 | 19 | 1 | 1 | 69 | 1 | 66 | 3.24e-23 | 89.7 |
| Msa0262140 | MtrunA17_Chr2g0324531 | 76.000 | 50 | 12 | 0 | 109 | 158 | 3 | 52 | 2.41e-21 | 81.6 |
| Msa0262140 | MtrunA17_Chr4g0040201 | 60.317 | 63 | 20 | 2 | 9 | 69 | 8 | 67 | 2.48e-14 | 67.4 |
| Msa0262140 | MtrunA17_Chr4g0040201 | 64.286 | 42 | 15 | 0 | 109 | 150 | 160 | 201 | 1.82e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATCTCTCGCCTATTT+TGG | 0.215651 | 2_2:-60867193 | None:intergenic |
| AATACAGACGCATTTGATAT+TGG | 0.233999 | 2_2:+60865078 | Msa0262140:intron |
| CAATTGTGGGATCTTGAAAT+TGG | 0.248893 | 2_2:+60867258 | Msa0262140:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 2_2:+60867165 | Msa0262140:CDS |
| TTCACCTTTGGATTATAGTT+AGG | 0.301144 | 2_2:-60861787 | None:intergenic |
| GCCACCATGCTCTAATTTAT+AGG | 0.319528 | 2_2:-60865245 | None:intergenic |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_2:-60861759 | None:intergenic |
| ATACAGACGCATTTGATATT+GGG | 0.358600 | 2_2:+60865079 | Msa0262140:intron |
| CGATTTGGAGAAACCAAAAT+AGG | 0.365801 | 2_2:+60867180 | Msa0262140:CDS |
| AACTATCTTTCTTTCGACTT+TGG | 0.382287 | 2_2:-60861707 | None:intergenic |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_2:-60861747 | None:intergenic |
| AGATAGACAATGAGTTGAAT+AGG | 0.389032 | 2_2:+60865119 | Msa0262140:CDS |
| TCACCTTTGGATTATAGTTA+GGG | 0.404073 | 2_2:-60861786 | None:intergenic |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_2:+60867271 | Msa0262140:CDS |
| CGAGAGATTGAAAGCATTTG+TGG | 0.420058 | 2_2:+60867203 | Msa0262140:CDS |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_2:+60867272 | Msa0262140:CDS |
| ATTTCAAGATCCCACAATTG+AGG | 0.491118 | 2_2:-60867255 | None:intergenic |
| TCCAGGACTCAATCAATTTG+AGG | 0.495516 | 2_2:+60865159 | Msa0262140:CDS |
| GGAAAGCTGTATTTCTCTCA+TGG | 0.500298 | 2_2:+60865202 | Msa0262140:CDS |
| TGGAAACACAACCTCAATTG+TGG | 0.511551 | 2_2:+60867244 | Msa0262140:CDS |
| TATGTCACTTTAATCGATCC+AGG | 0.521051 | 2_2:+60865142 | Msa0262140:CDS |
| ACCTCAAATTGATTGAGTCC+TGG | 0.525940 | 2_2:-60865160 | None:intergenic |
| TTGTGTTTCCACATCGCTCA+CGG | 0.549953 | 2_2:-60867232 | None:intergenic |
| GTTGTCGTGGATAAATATGA+TGG | 0.551953 | 2_2:+60865181 | Msa0262140:CDS |
| GACGCATTTGATATTGGGTA+CGG | 0.559716 | 2_2:+60865084 | Msa0262140:intron |
| TCGACTTTGGTTGAAGAACA+AGG | 0.563919 | 2_2:-60861694 | None:intergenic |
| GGAAACACAACCTCAATTGT+GGG | 0.567014 | 2_2:+60867245 | Msa0262140:CDS |
| CAATCAATTTGAGGTTGTCG+TGG | 0.576079 | 2_2:+60865168 | Msa0262140:CDS |
| AGATTGAAAGCATTTGTGGA+AGG | 0.584279 | 2_2:+60867207 | Msa0262140:CDS |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 2_2:-60867165 | None:intergenic |
| TGGAATAGAAGAACTGAACA+AGG | 0.624967 | 2_2:+60865222 | Msa0262140:CDS |
| TCTCCCTAACTATAATCCAA+AGG | 0.627898 | 2_2:+60861783 | Msa0262140:CDS |
| AAGGCCTATAAATTAGAGCA+TGG | 0.635613 | 2_2:+60865241 | Msa0262140:CDS |
| ATTGGGTACGGATCTCAACA+AGG | 0.665088 | 2_2:+60865096 | Msa0262140:CDS |
| TCAATGGATCATAATCAACA+AGG | 0.673310 | 2_2:+60861664 | None:intergenic |
| GGAAGGATCCGTGAGCGATG+TGG | 0.680798 | 2_2:+60867224 | Msa0262140:CDS |
| ATGGATCATAATCAACAAGG+AGG | 0.711780 | 2_2:+60861667 | Msa0262140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr2_2:60862701-60862720 | None:intergenic | 0.0% |
| !!! | AATTATAATATTTGTTGTTA+GGG | - | chr2_2:60862332-60862351 | None:intergenic | 10.0% |
| !!! | AAATTATAATATTTGTTGTT+AGG | - | chr2_2:60862333-60862352 | None:intergenic | 10.0% |
| !! | ATAATAAAAACATATCAAAT+AGG | - | chr2_2:60865919-60865938 | None:intergenic | 10.0% |
| !! | TTAAGAAAATATAATTAATC+TGG | - | chr2_2:60866020-60866039 | None:intergenic | 10.0% |
| !!! | TTGATTTTTTTATAAACCAA+AGG | + | chr2_2:60861840-60861859 | Msa0262140:intron | 15.0% |
| !! | ATTGAACAAAAAAAAAACAT+GGG | - | chr2_2:60862024-60862043 | None:intergenic | 15.0% |
| !! | AATTGAACAAAAAAAAAACA+TGG | - | chr2_2:60862025-60862044 | None:intergenic | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_2:60862852-60862871 | Msa0262140:intron | 15.0% |
| !! | ATGAATAACACATATTAATT+TGG | - | chr2_2:60863127-60863146 | None:intergenic | 15.0% |
| !!! | TTAAAAGCTTATTTTTACAT+AGG | - | chr2_2:60863285-60863304 | None:intergenic | 15.0% |
| !!! | GACTTTTTTTTTAATCTTTA+CGG | - | chr2_2:60863366-60863385 | None:intergenic | 15.0% |
| !! | AATATATTTATCAATCTTCT+AGG | + | chr2_2:60863431-60863450 | Msa0262140:intron | 15.0% |
| !! | AAATGTTATATCATGATTTA+TGG | - | chr2_2:60863832-60863851 | None:intergenic | 15.0% |
| !!! | TATATATATATATGCACTTT+TGG | - | chr2_2:60863986-60864005 | None:intergenic | 15.0% |
| !! | ATATTTAATGCAAATAAAGT+CGG | + | chr2_2:60864242-60864261 | Msa0262140:intron | 15.0% |
| !! | AGCAATATAATTATAGTTAA+TGG | - | chr2_2:60864367-60864386 | None:intergenic | 15.0% |
| !!! | TGATCATATGTTTTTTTTAA+GGG | - | chr2_2:60864644-60864663 | None:intergenic | 15.0% |
| !!! | ATGATCATATGTTTTTTTTA+AGG | - | chr2_2:60864645-60864664 | None:intergenic | 15.0% |
| !! | AATAATAATAATAGTCATCA+TGG | + | chr2_2:60866143-60866162 | Msa0262140:intron | 15.0% |
| !! | GGTAAATTAAAGAAGAAAAA+AGG | - | chr2_2:60862060-60862079 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTTTGAAGAAAAG+TGG | + | chr2_2:60863731-60863750 | Msa0262140:intron | 20.0% |
| !! | TAAATTTAATAGTGTGACAT+TGG | + | chr2_2:60863797-60863816 | Msa0262140:intron | 20.0% |
| !!! | TTATTTTCTATAACATGGAA+AGG | - | chr2_2:60863860-60863879 | None:intergenic | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | - | chr2_2:60864034-60864053 | None:intergenic | 20.0% |
| !!! | AAAAAGTATTTCGACTAAAT+AGG | + | chr2_2:60864452-60864471 | Msa0262140:intron | 20.0% |
| !!! | AATATTTCTATAAAATAGGC+TGG | + | chr2_2:60864485-60864504 | Msa0262140:intron | 20.0% |
| !!! | GTATTTTATACAAAAATTCC+TGG | + | chr2_2:60864955-60864974 | Msa0262140:intron | 20.0% |
| !! | AAAAATCAAATGTGCAAAAT+AGG | - | chr2_2:60865850-60865869 | None:intergenic | 20.0% |
| !! | ATTAATAGATGAACTTATTC+TGG | - | chr2_2:60866048-60866067 | None:intergenic | 20.0% |
| !! | ACTTTATATTGCAAATCAAA+TGG | - | chr2_2:60866220-60866239 | None:intergenic | 20.0% |
| !! | GCAATTAAAACAATTCTTAT+AGG | - | chr2_2:60866506-60866525 | None:intergenic | 20.0% |
| !! | AAAATAATGTAACCATACAT+AGG | - | chr2_2:60866964-60866983 | None:intergenic | 20.0% |
| ! | GAAAGATAGTTGAGAAAAAT+AGG | + | chr2_2:60861719-60861738 | Msa0262140:CDS | 25.0% |
| ! | ATACATGTATATGAATGTGA+AGG | - | chr2_2:60861881-60861900 | None:intergenic | 25.0% |
| ! | TATTCATGTGAGGAATAAAT+CGG | + | chr2_2:60861904-60861923 | Msa0262140:intron | 25.0% |
| !! | TGTTAAAACATTTTACACCT+AGG | + | chr2_2:60861977-60861996 | Msa0262140:intron | 25.0% |
| ! | AAAAAAAAAACATGGGTTCA+TGG | - | chr2_2:60862017-60862036 | None:intergenic | 25.0% |
| !!! | TTTTCTTCTTTAATTTACCC+TGG | + | chr2_2:60862061-60862080 | Msa0262140:intron | 25.0% |
| ! | TAAAGAAAAACATGAATCCA+GGG | - | chr2_2:60862081-60862100 | None:intergenic | 25.0% |
| ! | TTAAAGAAAAACATGAATCC+AGG | - | chr2_2:60862082-60862101 | None:intergenic | 25.0% |
| !! | TAAAGAGAATTTTGCTGAAT+TGG | - | chr2_2:60862198-60862217 | None:intergenic | 25.0% |
| ! | GCAAAATTCTCTTTAACATT+TGG | + | chr2_2:60862203-60862222 | Msa0262140:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_2:60862801-60862820 | None:intergenic | 25.0% |
| ! | GAAATAGAGATTCATGAAAT+GGG | - | chr2_2:60862917-60862936 | None:intergenic | 25.0% |
| ! | AGAAATAGAGATTCATGAAA+TGG | - | chr2_2:60862918-60862937 | None:intergenic | 25.0% |
| ! | ATTTCATGAATCTCTATTTC+TGG | + | chr2_2:60862917-60862936 | Msa0262140:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_2:60862998-60863017 | None:intergenic | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | - | chr2_2:60863020-60863039 | None:intergenic | 25.0% |
| ! | CTAAGTTTATATTTGTCTCT+AGG | + | chr2_2:60863023-60863042 | Msa0262140:intron | 25.0% |
| ! | TGTTATGTTTCATTTAATGC+AGG | - | chr2_2:60863104-60863123 | None:intergenic | 25.0% |
| ! | GATTGATAAATATATTCGCT+TGG | - | chr2_2:60863427-60863446 | None:intergenic | 25.0% |
| ! | TGTACAAAATCAGAAAGAAA+AGG | + | chr2_2:60863472-60863491 | Msa0262140:intron | 25.0% |
| !! | AATGTTATTTGCATGTGTAT+AGG | - | chr2_2:60863632-60863651 | None:intergenic | 25.0% |
| !!! | GGAGTTTATTTTCTATAACA+TGG | - | chr2_2:60863865-60863884 | None:intergenic | 25.0% |
| ! | AAAAATCCCGAAACTAAAAA+TGG | + | chr2_2:60863905-60863924 | Msa0262140:intron | 25.0% |
| !!! | TTAGTTCCATTTTTAGTTTC+GGG | - | chr2_2:60863914-60863933 | None:intergenic | 25.0% |
| !!! | CTTAGTTCCATTTTTAGTTT+CGG | - | chr2_2:60863915-60863934 | None:intergenic | 25.0% |
| ! | TTAGTCATTAGTACATGTTT+AGG | - | chr2_2:60864119-60864138 | None:intergenic | 25.0% |
| ! | ATTTGTAGACTTTGAATCAA+CGG | - | chr2_2:60864186-60864205 | None:intergenic | 25.0% |
| !! | TTTTGATCAGCAATTAGTTA+GGG | - | chr2_2:60864277-60864296 | None:intergenic | 25.0% |
| !! | AGAGAAGTCAAAATACTTTT+TGG | - | chr2_2:60864427-60864446 | None:intergenic | 25.0% |
| ! | AATATGCACCAAAGTTATAA+GGG | - | chr2_2:60864610-60864629 | None:intergenic | 25.0% |
| ! | AAATATGCACCAAAGTTATA+AGG | - | chr2_2:60864611-60864630 | None:intergenic | 25.0% |
| ! | GATACTTGATTTCATAGTTA+TGG | - | chr2_2:60865327-60865346 | None:intergenic | 25.0% |
| !! | TTTAAAACATTCGCATATGT+GGG | - | chr2_2:60865449-60865468 | None:intergenic | 25.0% |
| !! | ATTTAAAACATTCGCATATG+TGG | - | chr2_2:60865450-60865469 | None:intergenic | 25.0% |
| ! | TTAAATTTAGTGTCACCAAA+TGG | + | chr2_2:60865464-60865483 | Msa0262140:intron | 25.0% |
| ! | AGATGTAACATTTAATCAAC+TGG | + | chr2_2:60865498-60865517 | Msa0262140:intron | 25.0% |
| !!! | TTTGATTTTTAGTTGTCTGA+TGG | + | chr2_2:60865860-60865879 | Msa0262140:intron | 25.0% |
| !! | AATTAAAGGATGCTATGTTT+TGG | + | chr2_2:60865943-60865962 | Msa0262140:intron | 25.0% |
| !! | TGCTTTTAATAGGTAGTAAT+TGG | - | chr2_2:60866533-60866552 | None:intergenic | 25.0% |
| !! | ACGTCATAAATGCTTTTAAT+AGG | - | chr2_2:60866543-60866562 | None:intergenic | 25.0% |
| ! | TATGACGTACTTATATCAAT+TGG | + | chr2_2:60866555-60866574 | Msa0262140:intron | 25.0% |
| !! | TTTTCTGTTTCCATTCTTTA+CGG | + | chr2_2:60866787-60866806 | Msa0262140:intron | 25.0% |
| ! | AGTCACATCATAAAGAAAAA+CGG | - | chr2_2:60866837-60866856 | None:intergenic | 25.0% |
| !! | GTCTTAACAATATTTTGTGA+AGG | + | chr2_2:60867062-60867081 | Msa0262140:intron | 25.0% |
| AACTATCTTTCTTTCGACTT+TGG | - | chr2_2:60861710-60861729 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr2_2:60861750-60861769 | None:intergenic | 30.0% | |
| TCACCTTTGGATTATAGTTA+GGG | - | chr2_2:60861789-60861808 | None:intergenic | 30.0% | |
| TTCACCTTTGGATTATAGTT+AGG | - | chr2_2:60861790-60861809 | None:intergenic | 30.0% | |
| CATGTATGTATATTCATGTG+AGG | + | chr2_2:60861894-60861913 | Msa0262140:intron | 30.0% | |
| ! | TGCATAACTCTTTGTTGTAT+TGG | + | chr2_2:60861934-60861953 | Msa0262140:intron | 30.0% |
| !! | CACAGTTGGCAAATTTTAAT+TGG | - | chr2_2:60862633-60862652 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr2_2:60862647-60862666 | None:intergenic | 30.0% |
| TACAAGTGATTGTAACATGT+GGG | - | chr2_2:60862886-60862905 | None:intergenic | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_2:60862999-60863018 | None:intergenic | 30.0% | |
| TAGGGTTTAGTAATAAGAAG+AGG | + | chr2_2:60863167-60863186 | Msa0262140:intron | 30.0% | |
| ATAGTGTGACATTGGTAAAT+TGG | + | chr2_2:60863805-60863824 | Msa0262140:intron | 30.0% | |
| TCATTAGTACATGTTTAGGA+GGG | - | chr2_2:60864115-60864134 | None:intergenic | 30.0% | |
| TTTGTAGACTTTGAATCAAC+GGG | - | chr2_2:60864185-60864204 | None:intergenic | 30.0% | |
| TTTGATCAGCAATTAGTTAG+GGG | - | chr2_2:60864276-60864295 | None:intergenic | 30.0% | |
| ! | CTTTTGATCAGCAATTAGTT+AGG | - | chr2_2:60864278-60864297 | None:intergenic | 30.0% |
| CTAACTAATTGCTGATCAAA+AGG | + | chr2_2:60864276-60864295 | Msa0262140:intron | 30.0% | |
| !! | TCAAAATACTTTTTGGACAG+TGG | - | chr2_2:60864420-60864439 | None:intergenic | 30.0% |
| ATATGCACCAAAGTTATAAG+GGG | - | chr2_2:60864609-60864628 | None:intergenic | 30.0% | |
| !!! | TGATATTTTTTGCTGTCGTA+AGG | - | chr2_2:60864687-60864706 | None:intergenic | 30.0% |
| TACGACAGCAAAAAATATCA+CGG | + | chr2_2:60864687-60864706 | Msa0262140:intron | 30.0% | |
| AATATCAAATGCGTCTGTAT+TGG | - | chr2_2:60865079-60865098 | None:intergenic | 30.0% | |
| AATACAGACGCATTTGATAT+TGG | + | chr2_2:60865078-60865097 | Msa0262140:intron | 30.0% | |
| ATACAGACGCATTTGATATT+GGG | + | chr2_2:60865079-60865098 | Msa0262140:intron | 30.0% | |
| ! | AGATAGACAATGAGTTGAAT+AGG | + | chr2_2:60865119-60865138 | Msa0262140:CDS | 30.0% |
| ! | TCCCTTAACTTTTTGTGATT+CGG | + | chr2_2:60865290-60865309 | Msa0262140:intron | 30.0% |
| AGGCTAGCACAATTAATTTA+CGG | + | chr2_2:60865373-60865392 | Msa0262140:intron | 30.0% | |
| TTAAAACATTCGCATATGTG+GGG | - | chr2_2:60865448-60865467 | None:intergenic | 30.0% | |
| GCTATCAAATACTTTAGCAT+AGG | - | chr2_2:60865633-60865652 | None:intergenic | 30.0% | |
| TGACAAGAATTGCAAAGAAT+TGG | + | chr2_2:60865658-60865677 | Msa0262140:intron | 30.0% | |
| TTGGCAATTATTAACGATAG+CGG | + | chr2_2:60865677-60865696 | Msa0262140:intron | 30.0% | |
| TTCTTAGAAACCGACAAAAT+AGG | + | chr2_2:60866262-60866281 | Msa0262140:intron | 30.0% | |
| ! | TGACGATATACCTATTTTGT+CGG | - | chr2_2:60866275-60866294 | None:intergenic | 30.0% |
| GTCACGAAAAACTTAATACA+CGG | + | chr2_2:60866577-60866596 | Msa0262140:intron | 30.0% | |
| !!! | TACGGTAATGACACTTTTTT+TGG | + | chr2_2:60866805-60866824 | Msa0262140:intron | 30.0% |
| TGATTCGATTAACTTCTATG+TGG | + | chr2_2:60866987-60867006 | Msa0262140:intron | 30.0% | |
| ATGGATCATAATCAACAAGG+AGG | + | chr2_2:60861667-60861686 | Msa0262140:CDS | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr2_2:60861762-60861781 | None:intergenic | 35.0% | |
| TCTCCCTAACTATAATCCAA+AGG | + | chr2_2:60861783-60861802 | Msa0262140:CDS | 35.0% | |
| GAAATTAAACAGATCGCCTT+TGG | - | chr2_2:60861859-60861878 | None:intergenic | 35.0% | |
| ! | AACATTTTACACCTAGGTCT+TGG | + | chr2_2:60861983-60862002 | Msa0262140:intron | 35.0% |
| ! | ACATTTTACACCTAGGTCTT+GGG | + | chr2_2:60861984-60862003 | Msa0262140:intron | 35.0% |
| !!! | TGAGAGAGCTTTTTGATTTG+AGG | + | chr2_2:60862149-60862168 | Msa0262140:intron | 35.0% |
| ! | AATTTTGCTGAATTGGAGAG+AGG | - | chr2_2:60862191-60862210 | None:intergenic | 35.0% |
| TATATATACCTGAGCAAGCA+CGG | + | chr2_2:60862754-60862773 | Msa0262140:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_2:60862797-60862816 | None:intergenic | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2_2:60862885-60862904 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2_2:60862887-60862906 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2_2:60862889-60862908 | Msa0262140:intron | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_2:60863068-60863087 | None:intergenic | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_2:60863067-60863086 | Msa0262140:intron | 35.0% | |
| ATTCATGTCAATCCAAGAAG+AGG | + | chr2_2:60863141-60863160 | Msa0262140:intron | 35.0% | |
| TTCCTATCTAATTGGAGACT+CGG | + | chr2_2:60863257-60863276 | Msa0262140:intron | 35.0% | |
| TTTGCATGTGTATAGGTTTG+CGG | - | chr2_2:60863625-60863644 | None:intergenic | 35.0% | |
| TAAACTCCAAACTGAGTTGT+AGG | + | chr2_2:60863877-60863896 | Msa0262140:intron | 35.0% | |
| AAACTCCAAACTGAGTTGTA+GGG | + | chr2_2:60863878-60863897 | Msa0262140:intron | 35.0% | |
| ! | TTTTACCCTACAACTCAGTT+TGG | - | chr2_2:60863886-60863905 | None:intergenic | 35.0% |
| TTTAGGAGGGAAAAATGCTA+GGG | - | chr2_2:60864102-60864121 | None:intergenic | 35.0% | |
| GTCATTAGTACATGTTTAGG+AGG | - | chr2_2:60864116-60864135 | None:intergenic | 35.0% | |
| GTGTGAAAATAGAGGTTGAA+CGG | - | chr2_2:60864153-60864172 | None:intergenic | 35.0% | |
| GTGATCAAGTGTGAAAATAG+AGG | - | chr2_2:60864161-60864180 | None:intergenic | 35.0% | |
| ! | TACTACCAATAGAAGCACAA+TGG | + | chr2_2:60864545-60864564 | Msa0262140:intron | 35.0% |
| AATGACCATTGTGCTTCTAT+TGG | - | chr2_2:60864553-60864572 | None:intergenic | 35.0% | |
| TTGTCTTCCCCTTATAACTT+TGG | + | chr2_2:60864599-60864618 | Msa0262140:intron | 35.0% | |
| AGTGAAATATACCGTAGCTA+TGG | + | chr2_2:60864794-60864813 | Msa0262140:intron | 35.0% | |
| TTATTGCTCTTCCATAGCTA+CGG | - | chr2_2:60864808-60864827 | None:intergenic | 35.0% | |
| CTTAATCATACTGTTAGACG+AGG | + | chr2_2:60864933-60864952 | Msa0262140:intron | 35.0% | |
| !! | TATGTCACTTTAATCGATCC+AGG | + | chr2_2:60865142-60865161 | Msa0262140:CDS | 35.0% |
| GTTGTCGTGGATAAATATGA+TGG | + | chr2_2:60865181-60865200 | Msa0262140:CDS | 35.0% | |
| TGGAATAGAAGAACTGAACA+AGG | + | chr2_2:60865222-60865241 | Msa0262140:CDS | 35.0% | |
| AAGGCCTATAAATTAGAGCA+TGG | + | chr2_2:60865241-60865260 | Msa0262140:CDS | 35.0% | |
| CCCGAATCACAAAAAGTTAA+GGG | - | chr2_2:60865294-60865313 | None:intergenic | 35.0% | |
| ! | CCCTTAACTTTTTGTGATTC+GGG | + | chr2_2:60865291-60865310 | Msa0262140:intron | 35.0% |
| ACCCGAATCACAAAAAGTTA+AGG | - | chr2_2:60865295-60865314 | None:intergenic | 35.0% | |
| ! | ATCTCCCTCCTTTAAGTTTA+AGG | + | chr2_2:60865353-60865372 | Msa0262140:intron | 35.0% |
| !! | CTAGCCTTAAACTTAAAGGA+GGG | - | chr2_2:60865360-60865379 | None:intergenic | 35.0% |
| !! | TGTGCTAGCCTTAAACTTAA+AGG | - | chr2_2:60865364-60865383 | None:intergenic | 35.0% |
| ATCTGCAAGTGTTAACCATT+TGG | - | chr2_2:60865482-60865501 | None:intergenic | 35.0% | |
| ! | ACATCATTGGTTGTTCAATG+TGG | + | chr2_2:60865700-60865719 | Msa0262140:intron | 35.0% |
| ! | TGTGGTCATTCTTTTTGACA+AGG | + | chr2_2:60865718-60865737 | Msa0262140:intron | 35.0% |
| TGCAAAATAGGAATGCATTG+GGG | - | chr2_2:60865838-60865857 | None:intergenic | 35.0% | |
| GTGCAAAATAGGAATGCATT+GGG | - | chr2_2:60865839-60865858 | None:intergenic | 35.0% | |
| TGTGCAAAATAGGAATGCAT+TGG | - | chr2_2:60865840-60865859 | None:intergenic | 35.0% | |
| ! | GCAATTAAGAGCGTAGTTAA+TGG | + | chr2_2:60866431-60866450 | Msa0262140:intron | 35.0% |
| TGGCTTGAAAACGTAGTTAA+TGG | + | chr2_2:60866451-60866470 | Msa0262140:intron | 35.0% | |
| AACACATTTGTCACGCTATA+TGG | + | chr2_2:60866679-60866698 | Msa0262140:intron | 35.0% | |
| ! | AGTGTCATTACCGTAAAGAA+TGG | - | chr2_2:60866800-60866819 | None:intergenic | 35.0% |
| AAACTTCTATCGCCTATGTA+TGG | + | chr2_2:60866949-60866968 | Msa0262140:intron | 35.0% | |
| TCGATTAACTTCTATGTGGT+AGG | + | chr2_2:60866991-60867010 | Msa0262140:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | - | chr2_2:60867168-60867187 | None:intergenic | 35.0% | |
| ! | CGATTTGGAGAAACCAAAAT+AGG | + | chr2_2:60867180-60867199 | Msa0262140:CDS | 35.0% |
| ! | TTTCAATCTCTCGCCTATTT+TGG | - | chr2_2:60867196-60867215 | None:intergenic | 35.0% |
| !! | AGATTGAAAGCATTTGTGGA+AGG | + | chr2_2:60867207-60867226 | Msa0262140:CDS | 35.0% |
| ATTTCAAGATCCCACAATTG+AGG | - | chr2_2:60867258-60867277 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | + | chr2_2:60867258-60867277 | Msa0262140:CDS | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr2_2:60867271-60867290 | Msa0262140:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr2_2:60867272-60867291 | Msa0262140:CDS | 35.0% | |
| TCGACTTTGGTTGAAGAACA+AGG | - | chr2_2:60861697-60861716 | None:intergenic | 40.0% | |
| ACACACACACAATTCACCTT+TGG | - | chr2_2:60861802-60861821 | None:intergenic | 40.0% | |
| !! | TCTTTGTTGTATTGGCTAGC+TGG | + | chr2_2:60861942-60861961 | Msa0262140:intron | 40.0% |
| !! | CTTTGTTGTATTGGCTAGCT+GGG | + | chr2_2:60861943-60861962 | Msa0262140:intron | 40.0% |
| TGGAATAAAACCCAAGACCT+AGG | - | chr2_2:60861997-60862016 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr2_2:60862568-60862587 | Msa0262140:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr2_2:60862571-60862590 | Msa0262140:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr2_2:60862594-60862613 | Msa0262140:intron | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_2:60863061-60863080 | Msa0262140:intron | 40.0% | |
| TCAATCCAAGAAGAGGTGAT+AGG | + | chr2_2:60863148-60863167 | Msa0262140:intron | 40.0% | |
| CAATCCAAGAAGAGGTGATA+GGG | + | chr2_2:60863149-60863168 | Msa0262140:intron | 40.0% | |
| TAAACCCTATCACCTCTTCT+TGG | - | chr2_2:60863156-60863175 | None:intergenic | 40.0% | |
| AACCGAGTCTCCAATTAGAT+AGG | - | chr2_2:60863262-60863281 | None:intergenic | 40.0% | |
| ! | GTTCGAGTTTCACTAGTTTC+AGG | + | chr2_2:60863674-60863693 | Msa0262140:intron | 40.0% |
| ! | TAAGCCACGAGTTAAGTTGT+CGG | - | chr2_2:60863707-60863726 | None:intergenic | 40.0% |
| GGGAAAAATGCTAGGGATTA+GGG | - | chr2_2:60864095-60864114 | None:intergenic | 40.0% | |
| AGGGAAAAATGCTAGGGATT+AGG | - | chr2_2:60864096-60864115 | None:intergenic | 40.0% | |
| GTTTAGGAGGGAAAAATGCT+AGG | - | chr2_2:60864103-60864122 | None:intergenic | 40.0% | |
| TTCAGCAGTTGCATAAATGC+AGG | - | chr2_2:60864887-60864906 | None:intergenic | 40.0% | |
| CTAAAGTGGTGCACATATCA+TGG | + | chr2_2:60864908-60864927 | Msa0262140:intron | 40.0% | |
| TAACAGTCTGATTGAGTTCC+AGG | - | chr2_2:60864976-60864995 | None:intergenic | 40.0% | |
| GACGCATTTGATATTGGGTA+CGG | + | chr2_2:60865084-60865103 | Msa0262140:intron | 40.0% | |
| TCCAGGACTCAATCAATTTG+AGG | + | chr2_2:60865159-60865178 | Msa0262140:CDS | 40.0% | |
| ACCTCAAATTGATTGAGTCC+TGG | - | chr2_2:60865163-60865182 | None:intergenic | 40.0% | |
| ! | CAATCAATTTGAGGTTGTCG+TGG | + | chr2_2:60865168-60865187 | Msa0262140:CDS | 40.0% |
| GGAAAGCTGTATTTCTCTCA+TGG | + | chr2_2:60865202-60865221 | Msa0262140:CDS | 40.0% | |
| GCCTATAAATTAGAGCATGG+TGG | + | chr2_2:60865244-60865263 | Msa0262140:intron | 40.0% | |
| GCCACCATGCTCTAATTTAT+AGG | - | chr2_2:60865248-60865267 | None:intergenic | 40.0% | |
| ATAAATTAGAGCATGGTGGC+TGG | + | chr2_2:60865248-60865267 | Msa0262140:intron | 40.0% | |
| CTTAAAGGAGGGAGATAACT+CGG | - | chr2_2:60865349-60865368 | None:intergenic | 40.0% | |
| !! | GCTAGCCTTAAACTTAAAGG+AGG | - | chr2_2:60865361-60865380 | None:intergenic | 40.0% |
| !! | TTAACGATAGCGGACATCAT+TGG | + | chr2_2:60865687-60865706 | Msa0262140:intron | 40.0% |
| GACAAGGACGAAATCAAGTT+TGG | + | chr2_2:60865734-60865753 | Msa0262140:intron | 40.0% | |
| AAGGACGAAATCAAGTTTGG+AGG | + | chr2_2:60865737-60865756 | Msa0262140:intron | 40.0% | |
| AGGACGAAATCAAGTTTGGA+GGG | + | chr2_2:60865738-60865757 | Msa0262140:intron | 40.0% | |
| AAATCAAGTTTGGAGGGGAT+TGG | + | chr2_2:60865744-60865763 | Msa0262140:intron | 40.0% | |
| ! | GGAAAATGTTTTACACCGCA+AGG | + | chr2_2:60865765-60865784 | Msa0262140:intron | 40.0% |
| AAGGCTTGGAGCAAAAACTT+TGG | + | chr2_2:60865811-60865830 | Msa0262140:intron | 40.0% | |
| GCAAAATAGGAATGCATTGG+GGG | - | chr2_2:60865837-60865856 | None:intergenic | 40.0% | |
| AGTGATCATGTCTCAAACCA+TGG | + | chr2_2:60866184-60866203 | Msa0262140:intron | 40.0% | |
| TCTCAAACCATGGACGATAA+AGG | + | chr2_2:60866194-60866213 | Msa0262140:intron | 40.0% | |
| AACGAATGACGCACTGTTAA+TGG | + | chr2_2:60866409-60866428 | Msa0262140:intron | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | + | chr2_2:60867165-60867184 | Msa0262140:CDS | 40.0% | |
| !! | CGAGAGATTGAAAGCATTTG+TGG | + | chr2_2:60867203-60867222 | Msa0262140:CDS | 40.0% |
| TGGAAACACAACCTCAATTG+TGG | + | chr2_2:60867244-60867263 | Msa0262140:CDS | 40.0% | |
| GGAAACACAACCTCAATTGT+GGG | + | chr2_2:60867245-60867264 | Msa0262140:CDS | 40.0% | |
| CTGAATTGGAGAGAGGATTG+AGG | - | chr2_2:60862184-60862203 | None:intergenic | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr2_2:60862588-60862607 | Msa0262140:intron | 45.0% |
| GCACGGTATGAAGAAGTGAA+TGG | + | chr2_2:60862771-60862790 | Msa0262140:intron | 45.0% | |
| AAGAAGAGATCACGTGATGG+TGG | - | chr2_2:60862974-60862993 | None:intergenic | 45.0% | |
| GGAAAGAAGAGATCACGTGA+TGG | - | chr2_2:60862977-60862996 | None:intergenic | 45.0% | |
| TGTGATCAGCATAGCTAAGC+TGG | + | chr2_2:60863213-60863232 | Msa0262140:intron | 45.0% | |
| TAGCTAAGCTGGTGGAAGTT+AGG | + | chr2_2:60863224-60863243 | Msa0262140:intron | 45.0% | |
| CAATTAGATAGGAACTGCCC+TGG | - | chr2_2:60863251-60863270 | None:intergenic | 45.0% | |
| CAGGGCAGTTCCTATCTAAT+TGG | + | chr2_2:60863249-60863268 | Msa0262140:intron | 45.0% | |
| GTATAGGTTTGCGGCAAATG+TGG | - | chr2_2:60863616-60863635 | None:intergenic | 45.0% | |
| ! | AAGCCACGAGTTAAGTTGTC+GGG | - | chr2_2:60863706-60863725 | None:intergenic | 45.0% |
| GGGCAAAGAAGGGTGAATTA+GGG | - | chr2_2:60864075-60864094 | None:intergenic | 45.0% | |
| AGGGCAAAGAAGGGTGAATT+AGG | - | chr2_2:60864076-60864095 | None:intergenic | 45.0% | |
| CTAGGGATTAGGGCAAAGAA+GGG | - | chr2_2:60864085-60864104 | None:intergenic | 45.0% | |
| CTTCGCAGATGTTGCACTAT+GGG | + | chr2_2:60864844-60864863 | Msa0262140:intron | 45.0% | |
| TGCAACTGCTGAAGCTAAAG+TGG | + | chr2_2:60864894-60864913 | Msa0262140:intron | 45.0% | |
| ATTGGGTACGGATCTCAACA+AGG | + | chr2_2:60865096-60865115 | Msa0262140:CDS | 45.0% | |
| TAGTAGATCTGGACAGATCC+AGG | - | chr2_2:60865412-60865431 | None:intergenic | 45.0% | |
| CATTCGCATATGTGGGGATA+AGG | - | chr2_2:60865442-60865461 | None:intergenic | 45.0% | |
| GGACGAAATCAAGTTTGGAG+GGG | + | chr2_2:60865739-60865758 | Msa0262140:intron | 45.0% | |
| AAGGAATCTGTACGAGTGGA+AGG | + | chr2_2:60865784-60865803 | Msa0262140:intron | 45.0% | |
| !! | TGTACGAGTGGAAGGCATTA+AGG | + | chr2_2:60865792-60865811 | Msa0262140:intron | 45.0% |
| CAAATGGCCTTTATCGTCCA+TGG | - | chr2_2:60866204-60866223 | None:intergenic | 45.0% | |
| ACTTAAGATCGAGCAGTGCA+GGG | + | chr2_2:60866854-60866873 | Msa0262140:intron | 45.0% | |
| TTGTGTTTCCACATCGCTCA+CGG | - | chr2_2:60867235-60867254 | None:intergenic | 45.0% | |
| !!! | TTTAAATATTTCTATAAAAT+AGG | + | chr2_2:60864481-60864500 | Msa0262140:intron | 5.0% |
| !!! | TTTTTATTATTTTCAATTAA+AGG | + | chr2_2:60865929-60865948 | Msa0262140:intron | 5.0% |
| GGCAAATAGTGCATCGCGAT+TGG | - | chr2_2:60862560-60862579 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr2_2:60862576-60862595 | Msa0262140:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr2_2:60862581-60862600 | None:intergenic | 50.0% | |
| TCTTCATACCGTGCTTGCTC+AGG | - | chr2_2:60862765-60862784 | None:intergenic | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_2:60862825-60862844 | None:intergenic | 50.0% | |
| GATCAGCATAGCTAAGCTGG+TGG | + | chr2_2:60863216-60863235 | Msa0262140:intron | 50.0% | |
| TTCCCCGACAACTTAACTCG+TGG | + | chr2_2:60863700-60863719 | Msa0262140:intron | 50.0% | |
| ! | AGCCACGAGTTAAGTTGTCG+GGG | - | chr2_2:60863705-60863724 | None:intergenic | 50.0% |
| GCTAGGGATTAGGGCAAAGA+AGG | - | chr2_2:60864086-60864105 | None:intergenic | 50.0% | |
| CCATAGTGCAACATCTGCGA+AGG | - | chr2_2:60864846-60864865 | None:intergenic | 50.0% | |
| CCTTCGCAGATGTTGCACTA+TGG | + | chr2_2:60864843-60864862 | Msa0262140:intron | 50.0% | |
| ! | ACAGATCCAGGTGCTGCATT+AGG | - | chr2_2:60865400-60865419 | None:intergenic | 50.0% |
| ATATGTGGGGATAAGGAGCG+GGG | - | chr2_2:60865435-60865454 | None:intergenic | 50.0% | |
| CATATGTGGGGATAAGGAGC+GGG | - | chr2_2:60865436-60865455 | None:intergenic | 50.0% | |
| GCATATGTGGGGATAAGGAG+CGG | - | chr2_2:60865437-60865456 | None:intergenic | 50.0% | |
| CCACTCGTACAGATTCCTTG+CGG | - | chr2_2:60865783-60865802 | None:intergenic | 50.0% | |
| !! | GAGTGGAAGGCATTAAGGCT+TGG | + | chr2_2:60865797-60865816 | Msa0262140:intron | 50.0% |
| GACTTAAGATCGAGCAGTGC+AGG | + | chr2_2:60866853-60866872 | Msa0262140:intron | 50.0% | |
| AGCTGGTGGAAGTTAGGACC+AGG | + | chr2_2:60863230-60863249 | Msa0262140:intron | 55.0% | |
| GCTGGTGGAAGTTAGGACCA+GGG | + | chr2_2:60863231-60863250 | Msa0262140:intron | 55.0% | |
| TACGGTCCTAATGCAGCACC+TGG | + | chr2_2:60865391-60865410 | Msa0262140:intron | 55.0% | |
| AAGGAGCGGGGTAGTAGATC+TGG | - | chr2_2:60865423-60865442 | None:intergenic | 55.0% | |
| CCGCAAGGAATCTGTACGAG+TGG | + | chr2_2:60865780-60865799 | Msa0262140:intron | 55.0% | |
| TCTATGTGGTAGGACCCGTG+CGG | + | chr2_2:60867001-60867020 | Msa0262140:intron | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2_2:60862956-60862975 | None:intergenic | 60.0% | |
| ATTGACCCGTGCTACCGCAC+GGG | - | chr2_2:60867018-60867037 | None:intergenic | 60.0% | |
| CATTGACCCGTGCTACCGCA+CGG | - | chr2_2:60867019-60867038 | None:intergenic | 60.0% | |
| GGAAGGATCCGTGAGCGATG+TGG | + | chr2_2:60867224-60867243 | Msa0262140:CDS | 60.0% | |
| GTAGGACCCGTGCGGTAGCA+CGG | + | chr2_2:60867009-60867028 | Msa0262140:intron | 65.0% | |
| TAGGACCCGTGCGGTAGCAC+GGG | + | chr2_2:60867010-60867029 | Msa0262140:intron | 65.0% | |
| CGTGCGGTAGCACGGGTCAA+TGG | + | chr2_2:60867017-60867036 | Msa0262140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60861667 | 60867311 | 60861667 | ID=Msa0262140;Name=Msa0262140 |
| chr2_2 | mRNA | 60861667 | 60867311 | 60861667 | ID=Msa0262140-mRNA-1;Parent=Msa0262140;Name=Msa0262140-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.5|0|0|4|0|158 |
| chr2_2 | exon | 60861667 | 60861804 | 60861667 | ID=Msa0262140-mRNA-1:exon:18742;Parent=Msa0262140-mRNA-1 |
| chr2_2 | exon | 60865085 | 60865262 | 60865085 | ID=Msa0262140-mRNA-1:exon:18743;Parent=Msa0262140-mRNA-1 |
| chr2_2 | exon | 60865951 | 60865958 | 60865951 | ID=Msa0262140-mRNA-1:exon:18744;Parent=Msa0262140-mRNA-1 |
| chr2_2 | exon | 60867162 | 60867311 | 60867162 | ID=Msa0262140-mRNA-1:exon:18745;Parent=Msa0262140-mRNA-1 |
| chr2_2 | CDS | 60861667 | 60861804 | 60861667 | ID=Msa0262140-mRNA-1:cds;Parent=Msa0262140-mRNA-1 |
| chr2_2 | CDS | 60865085 | 60865262 | 60865085 | ID=Msa0262140-mRNA-1:cds;Parent=Msa0262140-mRNA-1 |
| chr2_2 | CDS | 60865951 | 60865958 | 60865951 | ID=Msa0262140-mRNA-1:cds;Parent=Msa0262140-mRNA-1 |
| chr2_2 | CDS | 60867162 | 60867311 | 60867162 | ID=Msa0262140-mRNA-1:cds;Parent=Msa0262140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
