Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262150 | XP_039687055.1 | 89.091 | 220 | 20 | 2 | 1 | 217 | 1 | 219 | 5.74e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262150 | sp|F4JIJ7|BH162_ARATH | 39.106 | 179 | 95 | 5 | 13 | 180 | 11 | 186 | 9.26e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262150 | A0A072VCG2 | 89.091 | 220 | 20 | 2 | 1 | 217 | 1 | 219 | 2.74e-137 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0262150 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262150 | MtrunA17_Chr2g0324511 | 85.890 | 163 | 20 | 2 | 1 | 160 | 1 | 163 | 2.33e-95 | 275 |
| Msa0262150 | MtrunA17_Chr4g0040201 | 64.824 | 199 | 59 | 4 | 9 | 201 | 8 | 201 | 2.11e-85 | 251 |
| Msa0262150 | MtrunA17_Chr2g0324571 | 87.288 | 118 | 11 | 2 | 46 | 160 | 2 | 118 | 1.68e-67 | 203 |
| Msa0262150 | MtrunA17_Chr2g0324521 | 81.739 | 115 | 21 | 0 | 46 | 160 | 2 | 116 | 1.41e-63 | 193 |
| Msa0262150 | MtrunA17_Chr2g0282341 | 37.778 | 135 | 78 | 2 | 49 | 181 | 4 | 134 | 1.19e-28 | 104 |
| Msa0262150 | MtrunA17_Chr2g0324531 | 79.661 | 59 | 12 | 0 | 159 | 217 | 2 | 60 | 7.24e-28 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262150 | AT4G20970.1 | 39.106 | 179 | 95 | 5 | 13 | 180 | 11 | 186 | 9.41e-33 | 117 |
| Msa0262150 | AT1G10585.1 | 29.944 | 177 | 114 | 3 | 7 | 182 | 8 | 175 | 5.61e-17 | 75.9 |
| Msa0262150 | AT1G10586.1 | 26.286 | 175 | 119 | 3 | 7 | 180 | 8 | 173 | 5.86e-13 | 65.1 |
| Msa0262150 | AT1G10585.2 | 27.206 | 136 | 93 | 2 | 50 | 184 | 15 | 145 | 6.85e-11 | 58.9 |
| Msa0262150 | AT5G51780.1 | 29.518 | 166 | 101 | 5 | 22 | 176 | 10 | 170 | 8.13e-11 | 59.3 |
Find 48 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATCTCTCGCTTATTT+TGG | 0.185035 | 2_2:-60882053 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_2:+60881540 | Msa0262150:CDS |
| CAATTGTGGGATCTTGAAAT+TGG | 0.247122 | 2_2:+60882118 | Msa0262150:CDS |
| GGAGAAGAAAGAAAGTTTAA+TGG | 0.269701 | 2_2:+60881342 | Msa0262150:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.283108 | 2_2:+60881385 | Msa0262150:CDS |
| GAAGCATAGATTTATGTATC+AGG | 0.333471 | 2_2:+60882200 | Msa0262150:three_prime_UTR |
| TCTATGCTTCATCAAGGATT+TGG | 0.339592 | 2_2:-60882187 | None:intergenic |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_2:-60880897 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.362015 | 2_2:+60881343 | Msa0262150:CDS |
| CGAGAGATTGAAAGCGTTTG+TGG | 0.363389 | 2_2:+60882063 | Msa0262150:CDS |
| AGCGTTTGTGGAAGGATCTA+TGG | 0.366113 | 2_2:+60882075 | Msa0262150:CDS |
| AATGATCTTTCTTTCGACTT+TGG | 0.370678 | 2_2:-60880845 | None:intergenic |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_2:-60880885 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_2:+60881544 | Msa0262150:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_2:+60882131 | Msa0262150:CDS |
| TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2_2:-60881486 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2_2:-60881277 | None:intergenic |
| AAAATTGAGATTCATGAAAC+GGG | 0.451327 | 2_2:+60881424 | Msa0262150:CDS |
| TCAAGGATTTGGTAAACTCT+TGG | 0.454078 | 2_2:-60882176 | None:intergenic |
| TCGACTTTGGTTGAAGAAGA+AGG | 0.461998 | 2_2:-60880832 | None:intergenic |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_2:+60882132 | Msa0262150:CDS |
| ATCACCTTTGGATTATAGCT+AGG | 0.496982 | 2_2:-60880925 | None:intergenic |
| AGGCTATAAACTACATAAAG+AGG | 0.505657 | 2_2:+60881293 | Msa0262150:CDS |
| ATTTCAAGATCCCACAATTG+AGG | 0.509351 | 2_2:-60882115 | None:intergenic |
| TCACCTTTGGATTATAGCTA+GGG | 0.515824 | 2_2:-60880924 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_2:+60881576 | Msa0262150:CDS |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2_2:-60881271 | None:intergenic |
| TACATATACCTGAGCATGTA+CGG | 0.532457 | 2_2:-60881584 | None:intergenic |
| TGAAACGGGAACCACTCTAC+AGG | 0.533148 | 2_2:+60881438 | Msa0262150:CDS |
| AACAAGAGATCACGTGGTGG+TGG | 0.544675 | 2_2:+60881367 | Msa0262150:CDS |
| TACAGGTGATTGTAACATGT+GGG | 0.552681 | 2_2:+60881455 | Msa0262150:CDS |
| GGAAACACAGCCTCAATTGT+GGG | 0.559018 | 2_2:+60882105 | Msa0262150:CDS |
| AGATTGAAAGCGTTTGTGGA+AGG | 0.560710 | 2_2:+60882067 | Msa0262150:CDS |
| GACAAATATAAACTTAGCAA+AGG | 0.562346 | 2_2:+60881321 | Msa0262150:CDS |
| CATAAATCTATGCTTCATCA+AGG | 0.563090 | 2_2:-60882193 | None:intergenic |
| GCGTTTGTGGAAGGATCTAT+GGG | 0.563195 | 2_2:+60882076 | Msa0262150:CDS |
| TGGAAACACAGCCTCAATTG+TGG | 0.568137 | 2_2:+60882104 | Msa0262150:CDS |
| AAGCATAGATTTATGTATCA+GGG | 0.581682 | 2_2:+60882201 | Msa0262150:three_prime_UTR |
| CTACAGGTGATTGTAACATG+TGG | 0.624700 | 2_2:+60881454 | Msa0262150:CDS |
| TCTCCCTAGCTATAATCCAA+AGG | 0.625430 | 2_2:+60880921 | Msa0262150:CDS |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2_2:+60881273 | Msa0262150:CDS |
| TCAATGGATCATAATCAACA+AGG | 0.644293 | 2_2:+60880802 | None:intergenic |
| TGTTACAATCACCTGTAGAG+TGG | 0.651914 | 2_2:-60881449 | None:intergenic |
| GGAAGGATCTATGGGCGATG+TGG | 0.675287 | 2_2:+60882084 | Msa0262150:CDS |
| ATGGGAAACAAGAGATCACG+TGG | 0.723193 | 2_2:+60881361 | Msa0262150:CDS |
| ACAGGTGATTGTAACATGTG+GGG | 0.729449 | 2_2:+60881456 | Msa0262150:CDS |
| ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2_2:+60881516 | Msa0262150:CDS |
| GGAAACAAGAGATCACGTGG+TGG | 0.788770 | 2_2:+60881364 | Msa0262150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAACACATATTAATT+TGG | + | chr2_2:60881214-60881233 | Msa0262150:intron | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | - | chr2_2:60881489-60881508 | None:intergenic | 15.0% |
| !! | AAATAAACTCCAAATAAAAA+AGG | + | chr2_2:60881772-60881791 | Msa0262150:intron | 15.0% |
| !!! | TAAAAAAATTGCATCATTTT+TGG | - | chr2_2:60881847-60881866 | None:intergenic | 15.0% |
| !! | ATGAATAACACATATTAATT+TGG | + | chr2_2:60881214-60881233 | Msa0262150:intron | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | - | chr2_2:60881489-60881508 | None:intergenic | 15.0% |
| !! | AAATAAACTCCAAATAAAAA+AGG | + | chr2_2:60881772-60881791 | Msa0262150:intron | 15.0% |
| !!! | TAAAAAAATTGCATCATTTT+TGG | - | chr2_2:60881847-60881866 | None:intergenic | 15.0% |
| !! | ATATATGTATATGAATGTGA+TGG | - | chr2_2:60880962-60880981 | None:intergenic | 20.0% |
| !! | AAAAATTGAGATTCATGAAA+CGG | + | chr2_2:60881423-60881442 | Msa0262150:CDS | 20.0% |
| !!! | TTCATAGTTCCTTTTTTATT+TGG | - | chr2_2:60881784-60881803 | None:intergenic | 20.0% |
| !!! | TTCTTAACAATATTTTGCAA+AGG | + | chr2_2:60881894-60881913 | Msa0262150:intron | 20.0% |
| !! | ATATATGTATATGAATGTGA+TGG | - | chr2_2:60880962-60880981 | None:intergenic | 20.0% |
| !! | AAAAATTGAGATTCATGAAA+CGG | + | chr2_2:60881423-60881442 | Msa0262150:CDS | 20.0% |
| !!! | TTCATAGTTCCTTTTTTATT+TGG | - | chr2_2:60881784-60881803 | None:intergenic | 20.0% |
| !!! | TTCTTAACAATATTTTGCAA+AGG | + | chr2_2:60881894-60881913 | Msa0262150:intron | 20.0% |
| ! | GAAAGATCATTGAGAAAAAT+AGG | + | chr2_2:60880857-60880876 | Msa0262150:CDS | 25.0% |
| !! | CATATATGTATTTTCATGTG+AGG | + | chr2_2:60880975-60880994 | Msa0262150:intron | 25.0% |
| ! | TGTTATGTTTCATTTAATGC+AGG | + | chr2_2:60881237-60881256 | Msa0262150:intron | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | + | chr2_2:60881321-60881340 | Msa0262150:CDS | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | + | chr2_2:60881343-60881362 | Msa0262150:CDS | 25.0% |
| !! | GTTTCATGAATCTCAATTTT+TGG | - | chr2_2:60881424-60881443 | None:intergenic | 25.0% |
| ! | AAAATTGAGATTCATGAAAC+GGG | + | chr2_2:60881424-60881443 | Msa0262150:CDS | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | + | chr2_2:60881540-60881559 | Msa0262150:CDS | 25.0% |
| ! | TATGTATATACATACACACA+TGG | + | chr2_2:60881601-60881620 | Msa0262150:intron | 25.0% |
| ! | GAAAAAAACAAGTTGTATCA+TGG | - | chr2_2:60881658-60881677 | None:intergenic | 25.0% |
| ! | ATATGTGACATTGTTCATTA+GGG | - | chr2_2:60881739-60881758 | None:intergenic | 25.0% |
| ! | TGTGTCAAAAAAATGTTGAA+GGG | - | chr2_2:60881930-60881949 | None:intergenic | 25.0% |
| ! | TTAAGTTTCTCAATGTTGAA+GGG | - | chr2_2:60881958-60881977 | None:intergenic | 25.0% |
| ! | ATTAAGTTTCTCAATGTTGA+AGG | - | chr2_2:60881959-60881978 | None:intergenic | 25.0% |
| ! | CCAAATTGTAAAAAAGATTG+CGG | - | chr2_2:60882028-60882047 | None:intergenic | 25.0% |
| ! | GAAAGATCATTGAGAAAAAT+AGG | + | chr2_2:60880857-60880876 | Msa0262150:CDS | 25.0% |
| !! | CATATATGTATTTTCATGTG+AGG | + | chr2_2:60880975-60880994 | Msa0262150:intron | 25.0% |
| ! | TGTTATGTTTCATTTAATGC+AGG | + | chr2_2:60881237-60881256 | Msa0262150:intron | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | + | chr2_2:60881321-60881340 | Msa0262150:CDS | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | + | chr2_2:60881343-60881362 | Msa0262150:CDS | 25.0% |
| !! | GTTTCATGAATCTCAATTTT+TGG | - | chr2_2:60881424-60881443 | None:intergenic | 25.0% |
| ! | AAAATTGAGATTCATGAAAC+GGG | + | chr2_2:60881424-60881443 | Msa0262150:CDS | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | + | chr2_2:60881540-60881559 | Msa0262150:CDS | 25.0% |
| ! | TATGTATATACATACACACA+TGG | + | chr2_2:60881601-60881620 | Msa0262150:intron | 25.0% |
| ! | GAAAAAAACAAGTTGTATCA+TGG | - | chr2_2:60881658-60881677 | None:intergenic | 25.0% |
| ! | ATATGTGACATTGTTCATTA+GGG | - | chr2_2:60881739-60881758 | None:intergenic | 25.0% |
| ! | TGTGTCAAAAAAATGTTGAA+GGG | - | chr2_2:60881930-60881949 | None:intergenic | 25.0% |
| ! | TTAAGTTTCTCAATGTTGAA+GGG | - | chr2_2:60881958-60881977 | None:intergenic | 25.0% |
| ! | ATTAAGTTTCTCAATGTTGA+AGG | - | chr2_2:60881959-60881978 | None:intergenic | 25.0% |
| ! | CCAAATTGTAAAAAAGATTG+CGG | - | chr2_2:60882028-60882047 | None:intergenic | 25.0% |
| AATGATCTTTCTTTCGACTT+TGG | - | chr2_2:60880848-60880867 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr2_2:60880888-60880907 | None:intergenic | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | - | chr2_2:60880940-60880959 | None:intergenic | 30.0% | |
| AAAGAGTTATGCAATGAATG+TGG | - | chr2_2:60881008-60881027 | None:intergenic | 30.0% | |
| TACCTACATGACATTCATAT+AGG | + | chr2_2:60881103-60881122 | Msa0262150:intron | 30.0% | |
| AACCTATATGAATGTCATGT+AGG | - | chr2_2:60881108-60881127 | None:intergenic | 30.0% | |
| TTTCTTATGTCTAGGTGATA+GGG | - | chr2_2:60881149-60881168 | None:intergenic | 30.0% | |
| TAGGGTTTAGTAATAAGAAG+AGG | - | chr2_2:60881174-60881193 | None:intergenic | 30.0% | |
| AGGCTATAAACTACATAAAG+AGG | + | chr2_2:60881293-60881312 | Msa0262150:CDS | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | + | chr2_2:60881342-60881361 | Msa0262150:CDS | 30.0% | |
| GTATCATGGTTTATGGTTTA+AGG | - | chr2_2:60881644-60881663 | None:intergenic | 30.0% | |
| ACAAGTTGTATCATGGTTTA+TGG | - | chr2_2:60881651-60881670 | None:intergenic | 30.0% | |
| TTCATTAGGGTTAGAAATAG+CGG | - | chr2_2:60881726-60881745 | None:intergenic | 30.0% | |
| CATATGTGACATTGTTCATT+AGG | - | chr2_2:60881740-60881759 | None:intergenic | 30.0% | |
| CTGTGTCAAAAAAATGTTGA+AGG | - | chr2_2:60881931-60881950 | None:intergenic | 30.0% | |
| !!! | CCGCAATCTTTTTTACAATT+TGG | + | chr2_2:60882025-60882044 | Msa0262150:CDS | 30.0% |
| ! | TTTCAATCTCTCGCTTATTT+TGG | - | chr2_2:60882056-60882075 | None:intergenic | 30.0% |
| CATAAATCTATGCTTCATCA+AGG | - | chr2_2:60882196-60882215 | None:intergenic | 30.0% | |
| GAAGCATAGATTTATGTATC+AGG | + | chr2_2:60882200-60882219 | Msa0262150:three_prime_UTR | 30.0% | |
| AATGATCTTTCTTTCGACTT+TGG | - | chr2_2:60880848-60880867 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr2_2:60880888-60880907 | None:intergenic | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | - | chr2_2:60880940-60880959 | None:intergenic | 30.0% | |
| AAAGAGTTATGCAATGAATG+TGG | - | chr2_2:60881008-60881027 | None:intergenic | 30.0% | |
| TACCTACATGACATTCATAT+AGG | + | chr2_2:60881103-60881122 | Msa0262150:intron | 30.0% | |
| AACCTATATGAATGTCATGT+AGG | - | chr2_2:60881108-60881127 | None:intergenic | 30.0% | |
| TTTCTTATGTCTAGGTGATA+GGG | - | chr2_2:60881149-60881168 | None:intergenic | 30.0% | |
| TAGGGTTTAGTAATAAGAAG+AGG | - | chr2_2:60881174-60881193 | None:intergenic | 30.0% | |
| AGGCTATAAACTACATAAAG+AGG | + | chr2_2:60881293-60881312 | Msa0262150:CDS | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | + | chr2_2:60881342-60881361 | Msa0262150:CDS | 30.0% | |
| GTATCATGGTTTATGGTTTA+AGG | - | chr2_2:60881644-60881663 | None:intergenic | 30.0% | |
| ACAAGTTGTATCATGGTTTA+TGG | - | chr2_2:60881651-60881670 | None:intergenic | 30.0% | |
| TTCATTAGGGTTAGAAATAG+CGG | - | chr2_2:60881726-60881745 | None:intergenic | 30.0% | |
| CATATGTGACATTGTTCATT+AGG | - | chr2_2:60881740-60881759 | None:intergenic | 30.0% | |
| CTGTGTCAAAAAAATGTTGA+AGG | - | chr2_2:60881931-60881950 | None:intergenic | 30.0% | |
| !!! | CCGCAATCTTTTTTACAATT+TGG | + | chr2_2:60882025-60882044 | Msa0262150:CDS | 30.0% |
| ! | TTTCAATCTCTCGCTTATTT+TGG | - | chr2_2:60882056-60882075 | None:intergenic | 30.0% |
| CATAAATCTATGCTTCATCA+AGG | - | chr2_2:60882196-60882215 | None:intergenic | 30.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr2_2:60880900-60880919 | None:intergenic | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | - | chr2_2:60880927-60880946 | None:intergenic | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | - | chr2_2:60880928-60880947 | None:intergenic | 35.0% | |
| ! | TGCATAACTCTTTGCTGTAT+TGG | + | chr2_2:60881015-60881034 | Msa0262150:intron | 35.0% |
| GTTTCTTATGTCTAGGTGAT+AGG | - | chr2_2:60881150-60881169 | None:intergenic | 35.0% | |
| !! | AAGAGGTGTTTCTTATGTCT+AGG | - | chr2_2:60881157-60881176 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | - | chr2_2:60881274-60881293 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | + | chr2_2:60881273-60881292 | Msa0262150:CDS | 35.0% | |
| TACAGGTGATTGTAACATGT+GGG | + | chr2_2:60881455-60881474 | Msa0262150:CDS | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | + | chr2_2:60881544-60881563 | Msa0262150:CDS | 35.0% | |
| TACATATACCTGAGCATGTA+CGG | - | chr2_2:60881587-60881606 | None:intergenic | 35.0% | |
| !!! | GGTTAGAAATAGCGGATTTT+AGG | - | chr2_2:60881718-60881737 | None:intergenic | 35.0% |
| ATTTCAAGATCCCACAATTG+AGG | - | chr2_2:60882118-60882137 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | + | chr2_2:60882118-60882137 | Msa0262150:CDS | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr2_2:60882131-60882150 | Msa0262150:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr2_2:60882132-60882151 | Msa0262150:CDS | 35.0% | |
| ! | TCAAGGATTTGGTAAACTCT+TGG | - | chr2_2:60882179-60882198 | None:intergenic | 35.0% |
| TCTATGCTTCATCAAGGATT+TGG | - | chr2_2:60882190-60882209 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr2_2:60880900-60880919 | None:intergenic | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | - | chr2_2:60880927-60880946 | None:intergenic | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | - | chr2_2:60880928-60880947 | None:intergenic | 35.0% | |
| ! | TGCATAACTCTTTGCTGTAT+TGG | + | chr2_2:60881015-60881034 | Msa0262150:intron | 35.0% |
| GTTTCTTATGTCTAGGTGAT+AGG | - | chr2_2:60881150-60881169 | None:intergenic | 35.0% | |
| !! | AAGAGGTGTTTCTTATGTCT+AGG | - | chr2_2:60881157-60881176 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | - | chr2_2:60881274-60881293 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | + | chr2_2:60881273-60881292 | Msa0262150:CDS | 35.0% | |
| TACAGGTGATTGTAACATGT+GGG | + | chr2_2:60881455-60881474 | Msa0262150:CDS | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | + | chr2_2:60881544-60881563 | Msa0262150:CDS | 35.0% | |
| TACATATACCTGAGCATGTA+CGG | - | chr2_2:60881587-60881606 | None:intergenic | 35.0% | |
| !!! | GGTTAGAAATAGCGGATTTT+AGG | - | chr2_2:60881718-60881737 | None:intergenic | 35.0% |
| ATTTCAAGATCCCACAATTG+AGG | - | chr2_2:60882118-60882137 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | + | chr2_2:60882118-60882137 | Msa0262150:CDS | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr2_2:60882131-60882150 | Msa0262150:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr2_2:60882132-60882151 | Msa0262150:CDS | 35.0% | |
| ! | TCAAGGATTTGGTAAACTCT+TGG | - | chr2_2:60882179-60882198 | None:intergenic | 35.0% |
| TCTATGCTTCATCAAGGATT+TGG | - | chr2_2:60882190-60882209 | None:intergenic | 35.0% | |
| TCGACTTTGGTTGAAGAAGA+AGG | - | chr2_2:60880835-60880854 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | + | chr2_2:60880921-60880940 | Msa0262150:CDS | 40.0% | |
| TCATGTAGGTACTCTACTTG+TGG | - | chr2_2:60881094-60881113 | None:intergenic | 40.0% | |
| TAAACCCTATCACCTCTTCT+TGG | + | chr2_2:60881185-60881204 | Msa0262150:intron | 40.0% | |
| ATTCATGTCAGTCCAAGAAG+AGG | - | chr2_2:60881200-60881219 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | - | chr2_2:60881280-60881299 | None:intergenic | 40.0% | |
| TGTTACAATCACCTGTAGAG+TGG | - | chr2_2:60881452-60881471 | None:intergenic | 40.0% | |
| CTACAGGTGATTGTAACATG+TGG | + | chr2_2:60881454-60881473 | Msa0262150:CDS | 40.0% | |
| ACAGGTGATTGTAACATGTG+GGG | + | chr2_2:60881456-60881475 | Msa0262150:CDS | 40.0% | |
| !! | AGATTGAAAGCGTTTGTGGA+AGG | + | chr2_2:60882067-60882086 | Msa0262150:CDS | 40.0% |
| TCGACTTTGGTTGAAGAAGA+AGG | - | chr2_2:60880835-60880854 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | + | chr2_2:60880921-60880940 | Msa0262150:CDS | 40.0% | |
| TCATGTAGGTACTCTACTTG+TGG | - | chr2_2:60881094-60881113 | None:intergenic | 40.0% | |
| TAAACCCTATCACCTCTTCT+TGG | + | chr2_2:60881185-60881204 | Msa0262150:intron | 40.0% | |
| ATTCATGTCAGTCCAAGAAG+AGG | - | chr2_2:60881200-60881219 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | - | chr2_2:60881280-60881299 | None:intergenic | 40.0% | |
| TGTTACAATCACCTGTAGAG+TGG | - | chr2_2:60881452-60881471 | None:intergenic | 40.0% | |
| CTACAGGTGATTGTAACATG+TGG | + | chr2_2:60881454-60881473 | Msa0262150:CDS | 40.0% | |
| ACAGGTGATTGTAACATGTG+GGG | + | chr2_2:60881456-60881475 | Msa0262150:CDS | 40.0% | |
| !! | AGATTGAAAGCGTTTGTGGA+AGG | + | chr2_2:60882067-60882086 | Msa0262150:CDS | 40.0% |
| !! | TCTTTGCTGTATTGGCTAGC+TGG | + | chr2_2:60881023-60881042 | Msa0262150:intron | 45.0% |
| !! | CTTTGCTGTATTGGCTAGCT+GGG | + | chr2_2:60881024-60881043 | Msa0262150:intron | 45.0% |
| CAGTCCAAGAAGAGGTGATA+GGG | - | chr2_2:60881192-60881211 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAGAGGTGAT+AGG | - | chr2_2:60881193-60881212 | None:intergenic | 45.0% | |
| ATGGGAAACAAGAGATCACG+TGG | + | chr2_2:60881361-60881380 | Msa0262150:CDS | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | + | chr2_2:60881576-60881595 | Msa0262150:CDS | 45.0% | |
| !! | CGAGAGATTGAAAGCGTTTG+TGG | + | chr2_2:60882063-60882082 | Msa0262150:CDS | 45.0% |
| AGCGTTTGTGGAAGGATCTA+TGG | + | chr2_2:60882075-60882094 | Msa0262150:CDS | 45.0% | |
| GCGTTTGTGGAAGGATCTAT+GGG | + | chr2_2:60882076-60882095 | Msa0262150:CDS | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | + | chr2_2:60882104-60882123 | Msa0262150:CDS | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | + | chr2_2:60882105-60882124 | Msa0262150:CDS | 45.0% | |
| !! | TCTTTGCTGTATTGGCTAGC+TGG | + | chr2_2:60881023-60881042 | Msa0262150:intron | 45.0% |
| !! | CTTTGCTGTATTGGCTAGCT+GGG | + | chr2_2:60881024-60881043 | Msa0262150:intron | 45.0% |
| CAGTCCAAGAAGAGGTGATA+GGG | - | chr2_2:60881192-60881211 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAGAGGTGAT+AGG | - | chr2_2:60881193-60881212 | None:intergenic | 45.0% | |
| ATGGGAAACAAGAGATCACG+TGG | + | chr2_2:60881361-60881380 | Msa0262150:CDS | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | + | chr2_2:60881576-60881595 | Msa0262150:CDS | 45.0% | |
| !! | CGAGAGATTGAAAGCGTTTG+TGG | + | chr2_2:60882063-60882082 | Msa0262150:CDS | 45.0% |
| AGCGTTTGTGGAAGGATCTA+TGG | + | chr2_2:60882075-60882094 | Msa0262150:CDS | 45.0% | |
| GCGTTTGTGGAAGGATCTAT+GGG | + | chr2_2:60882076-60882095 | Msa0262150:CDS | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | + | chr2_2:60882104-60882123 | Msa0262150:CDS | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | + | chr2_2:60882105-60882124 | Msa0262150:CDS | 45.0% | |
| GGAAACAAGAGATCACGTGG+TGG | + | chr2_2:60881364-60881383 | Msa0262150:CDS | 50.0% | |
| AACAAGAGATCACGTGGTGG+TGG | + | chr2_2:60881367-60881386 | Msa0262150:CDS | 50.0% | |
| TGAAACGGGAACCACTCTAC+AGG | + | chr2_2:60881438-60881457 | Msa0262150:CDS | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | + | chr2_2:60881516-60881535 | Msa0262150:CDS | 50.0% | |
| GGAAACAAGAGATCACGTGG+TGG | + | chr2_2:60881364-60881383 | Msa0262150:CDS | 50.0% | |
| AACAAGAGATCACGTGGTGG+TGG | + | chr2_2:60881367-60881386 | Msa0262150:CDS | 50.0% | |
| TGAAACGGGAACCACTCTAC+AGG | + | chr2_2:60881438-60881457 | Msa0262150:CDS | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | + | chr2_2:60881516-60881535 | Msa0262150:CDS | 50.0% | |
| ATATGTGTGTGTGCGCGCGT+TGG | - | chr2_2:60881871-60881890 | None:intergenic | 55.0% | |
| GGAAGGATCTATGGGCGATG+TGG | + | chr2_2:60882084-60882103 | Msa0262150:CDS | 55.0% | |
| ATATGTGTGTGTGCGCGCGT+TGG | - | chr2_2:60881871-60881890 | None:intergenic | 55.0% | |
| GGAAGGATCTATGGGCGATG+TGG | + | chr2_2:60882084-60882103 | Msa0262150:CDS | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | + | chr2_2:60881385-60881404 | Msa0262150:CDS | 60.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | + | chr2_2:60881385-60881404 | Msa0262150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60880805 | 60882222 | 60880805 | ID=Msa0262150;Name=Msa0262150 |
| chr2_2 | mRNA | 60880805 | 60882222 | 60880805 | ID=Msa0262150-mRNA-1;Parent=Msa0262150;Name=Msa0262150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|24|217 |
| chr2_2 | exon | 60880805 | 60880942 | 60880805 | ID=Msa0262150-mRNA-1:exon:18724;Parent=Msa0262150-mRNA-1 |
| chr2_2 | exon | 60881259 | 60881597 | 60881259 | ID=Msa0262150-mRNA-1:exon:18725;Parent=Msa0262150-mRNA-1 |
| chr2_2 | exon | 60882022 | 60882222 | 60882022 | ID=Msa0262150-mRNA-1:exon:18726;Parent=Msa0262150-mRNA-1 |
| chr2_2 | CDS | 60880805 | 60880942 | 60880805 | ID=Msa0262150-mRNA-1:cds;Parent=Msa0262150-mRNA-1 |
| chr2_2 | CDS | 60881259 | 60881597 | 60881259 | ID=Msa0262150-mRNA-1:cds;Parent=Msa0262150-mRNA-1 |
| chr2_2 | CDS | 60882022 | 60882198 | 60882022 | ID=Msa0262150-mRNA-1:cds;Parent=Msa0262150-mRNA-1 |
| chr2_2 | three_prime_UTR | 60882199 | 60882222 | 60882199 | ID=Msa0262150-mRNA-1:three_prime_utr;Parent=Msa0262150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
