Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262160 | XP_039687055.1 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 6.33e-136 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262160 | sp|F4JIJ7|BH162_ARATH | 38.547 | 179 | 96 | 5 | 13 | 180 | 11 | 186 | 4.31e-30 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262160 | A0A072VCG2 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 3.03e-136 | 390 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0262160 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262160 | MtrunA17_Chr2g0324511 | 85.276 | 163 | 21 | 1 | 1 | 160 | 1 | 163 | 3.29e-96 | 277 |
| Msa0262160 | MtrunA17_Chr4g0040201 | 64.179 | 201 | 57 | 5 | 9 | 201 | 8 | 201 | 1.86e-84 | 249 |
| Msa0262160 | MtrunA17_Chr2g0324571 | 85.593 | 118 | 13 | 2 | 46 | 160 | 2 | 118 | 1.80e-66 | 201 |
| Msa0262160 | MtrunA17_Chr2g0324521 | 82.609 | 115 | 20 | 0 | 46 | 160 | 2 | 116 | 3.63e-65 | 197 |
| Msa0262160 | MtrunA17_Chr2g0282341 | 37.037 | 135 | 79 | 2 | 49 | 181 | 4 | 134 | 1.40e-27 | 102 |
| Msa0262160 | MtrunA17_Chr2g0324531 | 74.576 | 59 | 15 | 0 | 159 | 217 | 2 | 60 | 8.55e-26 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262160 | AT4G20970.1 | 38.547 | 179 | 96 | 5 | 13 | 180 | 11 | 186 | 4.39e-31 | 113 |
| Msa0262160 | AT1G10585.1 | 29.050 | 179 | 117 | 4 | 7 | 184 | 8 | 177 | 4.46e-15 | 70.9 |
| Msa0262160 | AT1G10586.1 | 25.824 | 182 | 124 | 5 | 1 | 180 | 1 | 173 | 1.44e-11 | 61.2 |
Find 47 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTGGGATCTTGAAAT+TGG | 0.192948 | 2_2:+60905185 | Msa0262160:CDS |
| TTTCAATCTCTCGCCTATTT+TGG | 0.215651 | 2_2:-60905120 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_2:+60903375 | Msa0262160:CDS |
| TGGAAACACAACCTCAATTC+TGG | 0.245971 | 2_2:+60905171 | Msa0262160:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.260572 | 2_2:+60903220 | Msa0262160:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2_2:+60903177 | Msa0262160:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 2_2:+60905092 | Msa0262160:CDS |
| TCTATTCTTCATCAAGGATT+AGG | 0.288350 | 2_2:-60905254 | None:intergenic |
| ATCACCTTTGGATCATAGTT+AGG | 0.324173 | 2_2:-60902653 | None:intergenic |
| GAAGAATAGATTAAAGTATC+TGG | 0.341952 | 2_2:+60905267 | Msa0262160:three_prime_UTR |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_2:-60902625 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2_2:+60903178 | Msa0262160:CDS |
| CGATTTGGAGAAACCAAAAT+AGG | 0.365801 | 2_2:+60905107 | Msa0262160:CDS |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_2:-60902613 | None:intergenic |
| ATTGCCTCATCTACTTGATC+AGG | 0.400525 | 2_2:-60903112 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_2:+60903379 | Msa0262160:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_2:+60905198 | Msa0262160:CDS |
| TAACTTCACAGAAAATAAAA+TGG | 0.408004 | 2_2:-60903321 | None:intergenic |
| AACGATCTTTCTTTCTACTT+TGG | 0.409199 | 2_2:-60902573 | None:intergenic |
| CAAACATTATATTTGTCTCT+AGG | 0.410779 | 2_2:-60903150 | None:intergenic |
| CGAGAGATTGAAAGCATTTG+TGG | 0.420058 | 2_2:+60905130 | Msa0262160:CDS |
| CTTTAATCTATTCTTCATCA+AGG | 0.435959 | 2_2:-60905260 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_2:+60903259 | Msa0262160:CDS |
| TCTACTTTGGTTGAAGAAGA+AGG | 0.464564 | 2_2:-60902560 | None:intergenic |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_2:+60905199 | Msa0262160:CDS |
| TCACCTTTGGATCATAGTTA+GGG | 0.469862 | 2_2:-60902652 | None:intergenic |
| ATTTCAAGATCCCAGAATTG+AGG | 0.481933 | 2_2:-60905182 | None:intergenic |
| TCAAGGATTAGGTAAACTCT+TGG | 0.489378 | 2_2:-60905243 | None:intergenic |
| GGAAACACAACCTCAATTCT+GGG | 0.497186 | 2_2:+60905172 | Msa0262160:CDS |
| TCATCTACTTGATCAGGTAA+TGG | 0.516045 | 2_2:-60903106 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_2:+60903411 | Msa0262160:CDS |
| TTGTGTTTCCACATTGCTCA+CGG | 0.538142 | 2_2:-60905159 | None:intergenic |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2_2:-60903419 | None:intergenic |
| TACAAGTCATTGTAACATGT+GGG | 0.544345 | 2_2:+60903290 | Msa0262160:CDS |
| AGATTGAAAGCATTTGTGGA+AGG | 0.584279 | 2_2:+60905134 | Msa0262160:CDS |
| CTACAAGTCATTGTAACATG+TGG | 0.589705 | 2_2:+60903289 | Msa0262160:CDS |
| TCTCCCTAACTATGATCCAA+AGG | 0.591025 | 2_2:+60902649 | Msa0262160:CDS |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 2_2:-60905092 | None:intergenic |
| AATAAGAGATCACGTGATGG+TGG | 0.625950 | 2_2:+60903202 | Msa0262160:CDS |
| TGTTACAATGACTTGTAGAG+TGG | 0.628096 | 2_2:-60903284 | None:intergenic |
| ATTACCTGATCAAGTAGATG+AGG | 0.635272 | 2_2:+60903108 | Msa0262160:CDS |
| GGAAATAAGAGATCACGTGA+TGG | 0.672227 | 2_2:+60903199 | Msa0262160:CDS |
| ACAAGTCATTGTAACATGTG+GGG | 0.680252 | 2_2:+60903291 | Msa0262160:CDS |
| TAAATGGATCAAAATCAACA+AGG | 0.698469 | 2_2:+60902530 | None:intergenic |
| ATGGATCAAAATCAACAAGG+AGG | 0.707629 | 2_2:+60902533 | Msa0262160:CDS |
| ACTGCATGAAGAAAACGTCG+AGG | 0.726422 | 2_2:+60903351 | Msa0262160:CDS |
| GGAAGGATCCGTGAGCAATG+TGG | 0.734055 | 2_2:+60905151 | Msa0262160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGCAATAAATTTTATA+CGG | - | chr2_2:60903964-60903983 | None:intergenic | 10.0% |
| !! | TATTTGAATAAATACATATT+TGG | - | chr2_2:60904890-60904909 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAAATCACCTT+TGG | - | chr2_2:60902668-60902687 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTATAAGCCA+AGG | + | chr2_2:60902680-60902699 | Msa0262160:intron | 15.0% |
| !!! | TATTTTATTTTATAAGCCAA+GGG | + | chr2_2:60902681-60902700 | Msa0262160:intron | 15.0% |
| !! | TGTTAATTAATTAAAAGAAG+AGG | - | chr2_2:60903000-60903019 | None:intergenic | 15.0% |
| !! | TTGAATAACACATATTAATT+TGG | + | chr2_2:60903049-60903068 | Msa0262160:intron | 15.0% |
| !!! | TTATCAATTGTTTCTATTTT+AGG | + | chr2_2:60903702-60903721 | Msa0262160:intron | 15.0% |
| !!! | TATCAATTGTTTCTATTTTA+GGG | + | chr2_2:60903703-60903722 | Msa0262160:intron | 15.0% |
| !!! | TTGTTATTGCAATAAATTTT+AGG | - | chr2_2:60903907-60903926 | None:intergenic | 15.0% |
| !! | TCTTGTCAAAAAAAAAAAAA+AGG | + | chr2_2:60904392-60904411 | Msa0262160:intron | 15.0% |
| !! | AAAAAAAAAATGTTAGATCA+TGG | - | chr2_2:60904578-60904597 | None:intergenic | 15.0% |
| !!! | TTTTGTAAACACCTTTTATT+TGG | - | chr2_2:60902885-60902904 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | + | chr2_2:60903072-60903091 | Msa0262160:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | - | chr2_2:60903259-60903278 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | + | chr2_2:60903258-60903277 | Msa0262160:CDS | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | + | chr2_2:60903259-60903278 | Msa0262160:CDS | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | - | chr2_2:60903324-60903343 | None:intergenic | 20.0% |
| !! | TATATATATACATACACACA+TGG | + | chr2_2:60903434-60903453 | Msa0262160:intron | 20.0% |
| !!! | TTATTGCAATAAATTTTAGG+AGG | - | chr2_2:60903904-60903923 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAAATTTAGTGT+AGG | + | chr2_2:60904181-60904200 | Msa0262160:intron | 20.0% |
| !! | TATTTCTTAACTTATGTCTA+AGG | + | chr2_2:60904455-60904474 | Msa0262160:intron | 20.0% |
| !! | AATGACATGTCATAAAAAAT+GGG | - | chr2_2:60904497-60904516 | None:intergenic | 20.0% |
| !! | AAATGACATGTCATAAAAAA+TGG | - | chr2_2:60904498-60904517 | None:intergenic | 20.0% |
| ! | GAATATACATATGAATGTGA+TGG | - | chr2_2:60902722-60902741 | None:intergenic | 25.0% |
| ! | TTCATATGTATATTCATGTG+AGG | + | chr2_2:60902727-60902746 | Msa0262160:intron | 25.0% |
| !!! | GGTCGATTTTTTTTTTTTAC+AGG | - | chr2_2:60902778-60902797 | None:intergenic | 25.0% |
| ! | CAATTGTCACATATGTTTAA+CGG | + | chr2_2:60902856-60902875 | Msa0262160:intron | 25.0% |
| ! | TTTAACGGTTTCCAAATAAA+AGG | + | chr2_2:60902871-60902890 | Msa0262160:intron | 25.0% |
| ! | ACACTCTAATAAGTGTAAAA+TGG | - | chr2_2:60902935-60902954 | None:intergenic | 25.0% |
| ! | GAGTACCTATATATTCATAT+AGG | + | chr2_2:60902970-60902989 | Msa0262160:intron | 25.0% |
| ! | GTGAACCTATATGAATATAT+AGG | - | chr2_2:60902978-60902997 | None:intergenic | 25.0% |
| ! | CAAACATTATATTTGTCTCT+AGG | - | chr2_2:60903153-60903172 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | + | chr2_2:60903177-60903196 | Msa0262160:CDS | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | + | chr2_2:60903178-60903197 | Msa0262160:CDS | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | + | chr2_2:60903375-60903394 | Msa0262160:CDS | 25.0% |
| ! | TACATATCACTATTGTTCTT+TGG | + | chr2_2:60903561-60903580 | Msa0262160:intron | 25.0% |
| ! | ACATATCACTATTGTTCTTT+GGG | + | chr2_2:60903562-60903581 | Msa0262160:intron | 25.0% |
| ! | TCTAGTTACTTATATAGAGA+GGG | - | chr2_2:60903827-60903846 | None:intergenic | 25.0% |
| ! | ATCTAGTTACTTATATAGAG+AGG | - | chr2_2:60903828-60903847 | None:intergenic | 25.0% |
| !!! | AATTTTAGGAGGAAAAAATC+AGG | - | chr2_2:60903893-60903912 | None:intergenic | 25.0% |
| !! | AATAAATTTTATACGGTAGC+AGG | - | chr2_2:60903957-60903976 | None:intergenic | 25.0% |
| ! | CGATTTAATCTCATATATGA+TGG | - | chr2_2:60904060-60904079 | None:intergenic | 25.0% |
| !! | GTTAGTATGTGTTTTTCTAA+AGG | - | chr2_2:60904272-60904291 | None:intergenic | 25.0% |
| ! | AAATGTTAGATCATGGTTTA+TGG | - | chr2_2:60904571-60904590 | None:intergenic | 25.0% |
| !! | GTCTTAACAATATTTTGTGA+AGG | + | chr2_2:60904989-60905008 | Msa0262160:intron | 25.0% |
| ! | CTTTAATCTATTCTTCATCA+AGG | - | chr2_2:60905263-60905282 | None:intergenic | 25.0% |
| AACGATCTTTCTTTCTACTT+TGG | - | chr2_2:60902576-60902595 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr2_2:60902616-60902635 | None:intergenic | 30.0% | |
| ATATATAGGTACTCTACTTG+TGG | - | chr2_2:60902964-60902983 | None:intergenic | 30.0% | |
| TTAACACTATAAGCTCTTCT+TGG | + | chr2_2:60903025-60903044 | Msa0262160:intron | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | + | chr2_2:60903290-60903309 | Msa0262160:CDS | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | - | chr2_2:60903422-60903441 | None:intergenic | 30.0% | |
| TTGCAAATCCTAAAGAACTA+GGG | - | chr2_2:60903744-60903763 | None:intergenic | 30.0% | |
| ATTGCAAATCCTAAAGAACT+AGG | - | chr2_2:60903745-60903764 | None:intergenic | 30.0% | |
| TAATTGCAGTTCCTTCAATA+CGG | + | chr2_2:60903928-60903947 | Msa0262160:intron | 30.0% | |
| TAACAAATAACCTCCATGAA+AGG | + | chr2_2:60903981-60904000 | Msa0262160:intron | 30.0% | |
| AACAAATAACCTCCATGAAA+GGG | + | chr2_2:60903982-60904001 | Msa0262160:intron | 30.0% | |
| ! | TTGATGATAGATGCTAATGA+TGG | - | chr2_2:60904127-60904146 | None:intergenic | 30.0% |
| TCTATTCTTCATCAAGGATT+AGG | - | chr2_2:60905257-60905276 | None:intergenic | 30.0% | |
| ATGGATCAAAATCAACAAGG+AGG | + | chr2_2:60902533-60902552 | Msa0262160:CDS | 35.0% | |
| TCTACTTTGGTTGAAGAAGA+AGG | - | chr2_2:60902563-60902582 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr2_2:60902628-60902647 | None:intergenic | 35.0% | |
| TCACCTTTGGATCATAGTTA+GGG | - | chr2_2:60902655-60902674 | None:intergenic | 35.0% | |
| ATCACCTTTGGATCATAGTT+AGG | - | chr2_2:60902656-60902675 | None:intergenic | 35.0% | |
| GAAATTAAACAGATCACCCT+TGG | - | chr2_2:60902700-60902719 | None:intergenic | 35.0% | |
| CCAATCTCAAAGAAAACTCA+AGG | - | chr2_2:60902799-60902818 | None:intergenic | 35.0% | |
| !!! | CCTTGAGTTTTCTTTGAGAT+TGG | + | chr2_2:60902796-60902815 | Msa0262160:intron | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | - | chr2_2:60903109-60903128 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | + | chr2_2:60903108-60903127 | Msa0262160:CDS | 35.0% | |
| ! | TGTTACAATGACTTGTAGAG+TGG | - | chr2_2:60903287-60903306 | None:intergenic | 35.0% |
| CTACAAGTCATTGTAACATG+TGG | + | chr2_2:60903289-60903308 | Msa0262160:CDS | 35.0% | |
| ACAAGTCATTGTAACATGTG+GGG | + | chr2_2:60903291-60903310 | Msa0262160:CDS | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | + | chr2_2:60903379-60903398 | Msa0262160:CDS | 35.0% | |
| AGCCAGAAAACTTGAATAGT+GGG | + | chr2_2:60903478-60903497 | Msa0262160:intron | 35.0% | |
| ! | TAGCAAAACCCTAGTTCTTT+AGG | + | chr2_2:60903733-60903752 | Msa0262160:intron | 35.0% |
| TATATTCCGAACTGAGTTCT+AGG | + | chr2_2:60904662-60904681 | Msa0262160:intron | 35.0% | |
| ATATTCCGAACTGAGTTCTA+GGG | + | chr2_2:60904663-60904682 | Msa0262160:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | - | chr2_2:60905095-60905114 | None:intergenic | 35.0% | |
| ! | CGATTTGGAGAAACCAAAAT+AGG | + | chr2_2:60905107-60905126 | Msa0262160:CDS | 35.0% |
| ! | TTTCAATCTCTCGCCTATTT+TGG | - | chr2_2:60905123-60905142 | None:intergenic | 35.0% |
| !! | AGATTGAAAGCATTTGTGGA+AGG | + | chr2_2:60905134-60905153 | Msa0262160:CDS | 35.0% |
| ATTTCAAGATCCCAGAATTG+AGG | - | chr2_2:60905185-60905204 | None:intergenic | 35.0% | |
| !! | CAATTCTGGGATCTTGAAAT+TGG | + | chr2_2:60905185-60905204 | Msa0262160:CDS | 35.0% |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr2_2:60905198-60905217 | Msa0262160:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr2_2:60905199-60905218 | Msa0262160:CDS | 35.0% | |
| TCAAGGATTAGGTAAACTCT+TGG | - | chr2_2:60905246-60905265 | None:intergenic | 35.0% | |
| TCTCCCTAACTATGATCCAA+AGG | + | chr2_2:60902649-60902668 | Msa0262160:CDS | 40.0% | |
| ATTGCCTCATCTACTTGATC+AGG | - | chr2_2:60903115-60903134 | None:intergenic | 40.0% | |
| GGAAATAAGAGATCACGTGA+TGG | + | chr2_2:60903199-60903218 | Msa0262160:CDS | 40.0% | |
| AATAAGAGATCACGTGATGG+TGG | + | chr2_2:60903202-60903221 | Msa0262160:CDS | 40.0% | |
| GGTCTAATTATACGCAGTAG+CGG | + | chr2_2:60903455-60903474 | Msa0262160:intron | 40.0% | |
| GAGCCAGAAAACTTGAATAG+TGG | + | chr2_2:60903477-60903496 | Msa0262160:intron | 40.0% | |
| GCCAGAAAACTTGAATAGTG+GGG | + | chr2_2:60903479-60903498 | Msa0262160:intron | 40.0% | |
| CCAGAAAACTTGAATAGTGG+GGG | + | chr2_2:60903480-60903499 | Msa0262160:intron | 40.0% | |
| ! | GTTCTTTGGGAAATGCTAAC+AGG | + | chr2_2:60903575-60903594 | Msa0262160:intron | 40.0% |
| GTATGTTGCAAACCCTTTCA+TGG | - | chr2_2:60903997-60904016 | None:intergenic | 40.0% | |
| AACATCAACCGTACAATCAG+AGG | - | chr2_2:60904239-60904258 | None:intergenic | 40.0% | |
| ! | ACATACTAACTTGTGCCCTA+TGG | + | chr2_2:60904282-60904301 | Msa0262160:intron | 40.0% |
| ! | CATACTAACTTGTGCCCTAT+GGG | + | chr2_2:60904283-60904302 | Msa0262160:intron | 40.0% |
| ! | TATTCCGAACTGAGTTCTAG+GGG | + | chr2_2:60904664-60904683 | Msa0262160:intron | 40.0% |
| GTGTTGTGTGTGTGTATTCA+TGG | - | chr2_2:60904919-60904938 | None:intergenic | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | + | chr2_2:60905092-60905111 | Msa0262160:CDS | 40.0% | |
| !! | CGAGAGATTGAAAGCATTTG+TGG | + | chr2_2:60905130-60905149 | Msa0262160:CDS | 40.0% |
| TTGTGTTTCCACATTGCTCA+CGG | - | chr2_2:60905162-60905181 | None:intergenic | 40.0% | |
| TGGAAACACAACCTCAATTC+TGG | + | chr2_2:60905171-60905190 | Msa0262160:CDS | 40.0% | |
| GGAAACACAACCTCAATTCT+GGG | + | chr2_2:60905172-60905191 | Msa0262160:CDS | 40.0% | |
| ACTGCATGAAGAAAACGTCG+AGG | + | chr2_2:60903351-60903370 | Msa0262160:CDS | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | + | chr2_2:60903411-60903430 | Msa0262160:CDS | 45.0% | |
| !! | CCCCCACTATTCAAGTTTTC+TGG | - | chr2_2:60903483-60903502 | None:intergenic | 45.0% |
| AAATGCTAACAGGCGCTCTT+AGG | + | chr2_2:60903585-60903604 | Msa0262160:intron | 45.0% | |
| AATGCTAACAGGCGCTCTTA+GGG | + | chr2_2:60903586-60903605 | Msa0262160:intron | 45.0% | |
| TGTTGCAAACCCTTTCATGG+AGG | - | chr2_2:60903994-60904013 | None:intergenic | 45.0% | |
| ATCAACCGTACAATCAGAGG+CGG | - | chr2_2:60904236-60904255 | None:intergenic | 45.0% | |
| TCTTCCCCTAGAACTCAGTT+CGG | - | chr2_2:60904671-60904690 | None:intergenic | 45.0% | |
| GTAGCAGGCAACCGTATTGA+AGG | - | chr2_2:60903942-60903961 | None:intergenic | 50.0% | |
| AGCCACACACAAGGTTGTGT+GGG | - | chr2_2:60904213-60904232 | None:intergenic | 50.0% | |
| AACTTGTGCCCTATGGGCTT+AGG | + | chr2_2:60904289-60904308 | Msa0262160:intron | 50.0% | |
| ACTTGTGCCCTATGGGCTTA+GGG | + | chr2_2:60904290-60904309 | Msa0262160:intron | 50.0% | |
| ACTTGTGCCCTAAGCCCATA+GGG | - | chr2_2:60904300-60904319 | None:intergenic | 50.0% | |
| AGCCCACACAACCTTGTGTG+TGG | + | chr2_2:60904208-60904227 | Msa0262160:intron | 55.0% | |
| GAGCCACACACAAGGTTGTG+TGG | - | chr2_2:60904214-60904233 | None:intergenic | 55.0% | |
| TGGCTCCGCCTCTGATTGTA+CGG | + | chr2_2:60904228-60904247 | Msa0262160:intron | 55.0% | |
| CACTTGTGCCCTAAGCCCAT+AGG | - | chr2_2:60904301-60904320 | None:intergenic | 55.0% | |
| GGAAGGATCCGTGAGCAATG+TGG | + | chr2_2:60905151-60905170 | Msa0262160:CDS | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | + | chr2_2:60903220-60903239 | Msa0262160:CDS | 60.0% | |
| CAGAGGCGGAGCCACACACA+AGG | - | chr2_2:60904222-60904241 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60902533 | 60905289 | 60902533 | ID=Msa0262160;Name=Msa0262160 |
| chr2_2 | mRNA | 60902533 | 60905289 | 60902533 | ID=Msa0262160-mRNA-1;Parent=Msa0262160;Name=Msa0262160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|1|1|3|24|217 |
| chr2_2 | exon | 60902533 | 60902670 | 60902533 | ID=Msa0262160-mRNA-1:exon:18746;Parent=Msa0262160-mRNA-1 |
| chr2_2 | exon | 60903094 | 60903432 | 60903094 | ID=Msa0262160-mRNA-1:exon:18747;Parent=Msa0262160-mRNA-1 |
| chr2_2 | exon | 60905089 | 60905289 | 60905089 | ID=Msa0262160-mRNA-1:exon:18748;Parent=Msa0262160-mRNA-1 |
| chr2_2 | CDS | 60902533 | 60902670 | 60902533 | ID=Msa0262160-mRNA-1:cds;Parent=Msa0262160-mRNA-1 |
| chr2_2 | CDS | 60903094 | 60903432 | 60903094 | ID=Msa0262160-mRNA-1:cds;Parent=Msa0262160-mRNA-1 |
| chr2_2 | CDS | 60905089 | 60905265 | 60905089 | ID=Msa0262160-mRNA-1:cds;Parent=Msa0262160-mRNA-1 |
| chr2_2 | three_prime_UTR | 60905266 | 60905289 | 60905266 | ID=Msa0262160-mRNA-1:three_prime_utr;Parent=Msa0262160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
