Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262170 | XP_013465109.1 | 86.175 | 217 | 23 | 3 | 1 | 210 | 1 | 217 | 1.65e-126 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262170 | sp|F4JIJ7|BH162_ARATH | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 4.88e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262170 | A0A072VAT4 | 86.175 | 217 | 23 | 3 | 1 | 210 | 1 | 217 | 7.86e-127 | 366 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0262170 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262170 | MtrunA17_Chr2g0324511 | 82.209 | 163 | 19 | 2 | 1 | 153 | 1 | 163 | 2.88e-90 | 262 |
| Msa0262170 | MtrunA17_Chr4g0040201 | 66.495 | 194 | 57 | 4 | 9 | 194 | 8 | 201 | 1.23e-84 | 249 |
| Msa0262170 | MtrunA17_Chr2g0324521 | 86.957 | 115 | 9 | 2 | 45 | 153 | 2 | 116 | 1.34e-63 | 193 |
| Msa0262170 | MtrunA17_Chr2g0324571 | 80.342 | 117 | 15 | 1 | 45 | 153 | 2 | 118 | 3.12e-62 | 189 |
| Msa0262170 | MtrunA17_Chr2g0324531 | 86.441 | 59 | 8 | 0 | 152 | 210 | 2 | 60 | 4.26e-31 | 108 |
| Msa0262170 | MtrunA17_Chr2g0282341 | 39.552 | 134 | 69 | 3 | 48 | 173 | 4 | 133 | 4.51e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262170 | AT4G20970.1 | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 4.96e-34 | 120 |
| Msa0262170 | AT1G10585.1 | 29.825 | 171 | 114 | 3 | 7 | 175 | 9 | 175 | 1.85e-15 | 71.6 |
| Msa0262170 | AT1G10586.1 | 26.471 | 170 | 119 | 3 | 7 | 174 | 9 | 174 | 1.91e-12 | 63.5 |
| Msa0262170 | AT5G51780.1 | 30.247 | 162 | 99 | 3 | 21 | 169 | 10 | 170 | 2.12e-11 | 60.5 |
| Msa0262170 | AT5G51780.2 | 30.247 | 162 | 99 | 3 | 21 | 169 | 33 | 193 | 3.40e-11 | 60.5 |
Find 49 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAATTCCAATCAATTTA+AGG | 0.096259 | 2_2:-60915499 | Msa0262170:five_prime_UTR |
| CCGCAAACTTTGTTACAATT+TGG | 0.160686 | 2_2:-60913147 | Msa0262170:CDS |
| ATATATATATTTCTTAATTA+AGG | 0.196170 | 2_2:+60912979 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_2:-60913870 | Msa0262170:CDS |
| CAATTGTGGGATCTTGAAAT+TGG | 0.244456 | 2_2:-60913054 | Msa0262170:CDS |
| AACAAGAAAGAAAGTTTAAA+AGG | 0.273993 | 2_2:-60914025 | Msa0262170:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2_2:-60914050 | Msa0262170:CDS |
| ATATTTCTTAATTAAGGATT+TGG | 0.279536 | 2_2:+60912985 | None:intergenic |
| GAGAGTTGAGTTTGGAATAG+AGG | 0.319433 | 2_2:+60915352 | None:intergenic |
| ATAAATAACCTTAAATTGAT+TGG | 0.320560 | 2_2:+60915491 | None:intergenic |
| AATTCGAAGGTTTCTTTCAA+TGG | 0.323190 | 2_2:-60915460 | Msa0262170:exon |
| AGAGTTTGTGAACGGATCTA+TGG | 0.326191 | 2_2:-60913097 | Msa0262170:CDS |
| TCTTCCTAGCTATAATTCTA+AGG | 0.332366 | 2_2:-60915328 | Msa0262170:intron |
| AGGAAGAAGAGAGTTGAGTT+TGG | 0.335218 | 2_2:+60915344 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2_2:-60914049 | Msa0262170:CDS |
| CCAACTTTAGATTTGTCTCT+AGG | 0.356186 | 2_2:+60914077 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_2:-60913866 | Msa0262170:CDS |
| AACAACCTTTCTTTCGACTT+TGG | 0.406325 | 2_2:+60915404 | None:intergenic |
| CTTTCGACTTTGGTTGAAGA+AGG | 0.411324 | 2_2:+60915414 | None:intergenic |
| TATAACATTTAGTAGATAGT+TGG | 0.418579 | 2_2:+60915559 | None:intergenic |
| TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2_2:+60913924 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2_2:+60914115 | None:intergenic |
| TTGAAATTGGATCTGAGAGT+TGG | 0.440265 | 2_2:-60913041 | Msa0262170:CDS |
| CCAAATTGTAACAAAGTTTG+CGG | 0.448789 | 2_2:+60913147 | None:intergenic |
| TTCAACCAAAGTCGAAAGAA+AGG | 0.454979 | 2_2:-60915409 | Msa0262170:CDS |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_2:-60913986 | Msa0262170:CDS |
| TGAAATTGGATCTGAGAGTT+GGG | 0.479805 | 2_2:-60913040 | Msa0262170:CDS |
| CCTAGAGACAAATCTAAAGT+TGG | 0.498284 | 2_2:-60914077 | Msa0262170:CDS |
| ATTTCAAGATCCCACAATTG+AGG | 0.509351 | 2_2:+60913057 | None:intergenic |
| TTAAGGATTTGGTAAACTCA+TGG | 0.514490 | 2_2:+60912996 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_2:-60913834 | Msa0262170:intron |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2_2:+60914121 | None:intergenic |
| TGGAACATAATCAACAAGAA+TGG | 0.524412 | 2_2:-60915440 | Msa0262170:CDS |
| GAGTTTGTGAACGGATCTAT+GGG | 0.526348 | 2_2:-60913096 | Msa0262170:CDS |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2_2:+60913826 | None:intergenic |
| TACAAGTGATTGTAACATGT+GGG | 0.544345 | 2_2:-60913955 | Msa0262170:CDS |
| GGAAACACAGCCTCAATTGT+GGG | 0.559018 | 2_2:-60913067 | Msa0262170:CDS |
| TGGAAACACAGCCTCAATTG+TGG | 0.568137 | 2_2:-60913068 | Msa0262170:CDS |
| TTCACCTTAGAATTATAGCT+AGG | 0.582785 | 2_2:+60915324 | None:intergenic |
| GAGCAATCAAAATAAGTGAG+AGG | 0.593941 | 2_2:-60913125 | Msa0262170:CDS |
| TGTTACAATCACTTGTAGAG+TGG | 0.604182 | 2_2:+60913961 | None:intergenic |
| GTTACAATCACTTGTAGAGT+GGG | 0.605139 | 2_2:+60913962 | None:intergenic |
| CTACAAGTGATTGTAACATG+TGG | 0.615945 | 2_2:-60913956 | Msa0262170:CDS |
| AGGTTGAAAGAGTTTGTGAA+CGG | 0.618184 | 2_2:-60913105 | Msa0262170:CDS |
| TTTATCGTAAGAAAATTCGA+AGG | 0.623358 | 2_2:-60915473 | Msa0262170:five_prime_UTR |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2_2:-60914119 | Msa0262170:CDS |
| GAACGGATCTATGGGCGATG+TGG | 0.672622 | 2_2:-60913088 | Msa0262170:CDS |
| ACAAGTGATTGTAACATGTG+GGG | 0.739715 | 2_2:-60913954 | Msa0262170:CDS |
| ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2_2:-60913894 | Msa0262170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTATTGTTATGA+TGG | - | chr2_2:60913488-60913507 | Msa0262170:intron | 10.0% |
| !!! | TAAATTTATTTCTCTAAATT+CGG | + | chr2_2:60913586-60913605 | None:intergenic | 10.0% |
| !!! | AAATAAATTTATTTTACGTA+GGG | - | chr2_2:60913595-60913614 | Msa0262170:intron | 10.0% |
| !! | TTATTGAATAAATTTAATAC+AGG | - | chr2_2:60914384-60914403 | Msa0262170:intron | 10.0% |
| !! | TATAAATTCCAATCAATTTA+AGG | - | chr2_2:60913040-60913059 | Msa0262170:CDS | 15.0% |
| !! | ATAAATAACCTTAAATTGAT+TGG | + | chr2_2:60913051-60913070 | None:intergenic | 15.0% |
| !!! | GAAATAAATTTATTTTACGT+AGG | - | chr2_2:60913594-60913613 | Msa0262170:intron | 15.0% |
| !!! | TCCAATATATTCTATATTTT+AGG | - | chr2_2:60914028-60914047 | Msa0262170:CDS | 15.0% |
| !! | ACCTAAAATATAGAATATAT+TGG | + | chr2_2:60914032-60914051 | None:intergenic | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_2:60914618-60914637 | None:intergenic | 15.0% |
| !! | ATATTTCTTAATTAAGGATT+TGG | + | chr2_2:60915557-60915576 | None:intergenic | 15.0% |
| !! | TATAACATTTAGTAGATAGT+TGG | + | chr2_2:60912983-60913002 | None:intergenic | 20.0% |
| !!! | TATAGCATTTTGATTAGAAT+TGG | + | chr2_2:60913024-60913043 | None:intergenic | 20.0% |
| !! | AAATATTAACAAGTGTTCTT+GGG | + | chr2_2:60913421-60913440 | None:intergenic | 20.0% |
| !! | TCAAATGAATATACATATGT+GGG | + | chr2_2:60913444-60913463 | None:intergenic | 20.0% |
| !!! | ACTATTTAACACATTGTTTT+TGG | - | chr2_2:60913969-60913988 | Msa0262170:CDS | 20.0% |
| !! | TATTGGAATATCATGAATAT+CGG | + | chr2_2:60914015-60914034 | None:intergenic | 20.0% |
| !! | TTATTCAATAATGCTACATT+AGG | + | chr2_2:60914375-60914394 | None:intergenic | 20.0% |
| !! | AACAAGAAAGAAAGTTTAAA+AGG | - | chr2_2:60914514-60914533 | Msa0262170:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_2:60914553-60914572 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_2:60914552-60914571 | Msa0262170:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_2:60914553-60914572 | Msa0262170:intron | 20.0% |
| !!! | TTTTATAGCGTTAAAAGATA+AGG | - | chr2_2:60914888-60914907 | Msa0262170:intron | 20.0% |
| !!! | GAAAATTTTTCTTTGACTTT+TGG | + | chr2_2:60915024-60915043 | None:intergenic | 20.0% |
| !!! | AATTTCGAGCATATTTTTTA+GGG | + | chr2_2:60915099-60915118 | None:intergenic | 20.0% |
| !!! | CATTTTTTGCATTAAGTTTT+GGG | + | chr2_2:60915142-60915161 | None:intergenic | 20.0% |
| !!! | TCATTTTTTGCATTAAGTTT+TGG | + | chr2_2:60915143-60915162 | None:intergenic | 20.0% |
| !!! | TTATTATTCAAATGCACTTT+TGG | + | chr2_2:60915237-60915256 | None:intergenic | 20.0% |
| ! | TTTATCGTAAGAAAATTCGA+AGG | - | chr2_2:60913066-60913085 | Msa0262170:CDS | 25.0% |
| !! | TTTTCATCACGTATATATGT+AGG | - | chr2_2:60913246-60913265 | Msa0262170:intron | 25.0% |
| ! | TTTCATCACGTATATATGTA+GGG | - | chr2_2:60913247-60913266 | Msa0262170:intron | 25.0% |
| ! | TTATGCTAACAAATACCTAA+AGG | - | chr2_2:60913270-60913289 | Msa0262170:intron | 25.0% |
| ! | GAAATATTAACAAGTGTTCT+TGG | + | chr2_2:60913422-60913441 | None:intergenic | 25.0% |
| ! | CTCAAATGAATATACATATG+TGG | + | chr2_2:60913445-60913464 | None:intergenic | 25.0% |
| !! | ATTTATTTCTCTAAATTCGG+TGG | + | chr2_2:60913583-60913602 | None:intergenic | 25.0% |
| !!! | ACATAGATCTTATTTTGTGA+AGG | - | chr2_2:60913859-60913878 | Msa0262170:CDS | 25.0% |
| ! | CAACTAGATTTATAGAATTC+AGG | - | chr2_2:60914119-60914138 | Msa0262170:CDS | 25.0% |
| !!! | AGTTTAATTTGCATCACATT+AGG | - | chr2_2:60914228-60914247 | Msa0262170:intron | 25.0% |
| ! | CATATTTGATGAAAATAGGT+TGG | + | chr2_2:60914286-60914305 | None:intergenic | 25.0% |
| !! | CAACCTATTTTCATCAAATA+TGG | - | chr2_2:60914284-60914303 | Msa0262170:intron | 25.0% |
| ! | CTACCATATTTGATGAAAAT+AGG | + | chr2_2:60914290-60914309 | None:intergenic | 25.0% |
| ! | TGAAATTTCACAAGTATGAT+GGG | + | chr2_2:60914339-60914358 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_2:60914489-60914508 | Msa0262170:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_2:60914490-60914509 | Msa0262170:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_2:60914669-60914688 | Msa0262170:intron | 25.0% |
| !! | CAGCTTTAATATAATGCAAA+GGG | + | chr2_2:60914796-60914815 | None:intergenic | 25.0% |
| !!! | TCAAGTCTAGTTTTAAACTA+CGG | + | chr2_2:60914835-60914854 | None:intergenic | 25.0% |
| ! | ACTAGACTTGAATACATATT+TGG | - | chr2_2:60914844-60914863 | Msa0262170:intron | 25.0% |
| ! | TTTAACGCTATAAAAAGACA+AGG | + | chr2_2:60914883-60914902 | None:intergenic | 25.0% |
| !!! | TGATGATGTAAAACTTTTGA+GGG | - | chr2_2:60914997-60915016 | Msa0262170:intron | 25.0% |
| !!! | CAATTTCGAGCATATTTTTT+AGG | + | chr2_2:60915100-60915119 | None:intergenic | 25.0% |
| !! | CTCTTAACAATATTTTGCAA+AGG | - | chr2_2:60915287-60915306 | Msa0262170:intron | 25.0% |
| AATTCGAAGGTTTCTTTCAA+TGG | - | chr2_2:60913079-60913098 | Msa0262170:CDS | 30.0% | |
| TGGAACATAATCAACAAGAA+TGG | - | chr2_2:60913099-60913118 | Msa0262170:CDS | 30.0% | |
| GAAAGGTTGTTGAGAAAAAT+AGG | - | chr2_2:60913147-60913166 | Msa0262170:CDS | 30.0% | |
| TCTTCCTAGCTATAATTCTA+AGG | - | chr2_2:60913211-60913230 | Msa0262170:intron | 30.0% | |
| TTCACCTTAGAATTATAGCT+AGG | + | chr2_2:60913218-60913237 | None:intergenic | 30.0% | |
| !! | ATACCTAAAGGCATTGTTTA+AGG | - | chr2_2:60913282-60913301 | Msa0262170:intron | 30.0% |
| AATCCTTAAACAATGCCTTT+AGG | + | chr2_2:60913288-60913307 | None:intergenic | 30.0% | |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr2_2:60913648-60913667 | Msa0262170:intron | 30.0% |
| !! | CACAGTTGGCAAATTTTAAT+TGG | - | chr2_2:60913662-60913681 | Msa0262170:intron | 30.0% |
| !! | GTTTTTAGATTCAATTTGCC+AGG | + | chr2_2:60913946-60913965 | None:intergenic | 30.0% |
| GGGTTTATGAAGGAAAAAAA+GGG | + | chr2_2:60914319-60914338 | None:intergenic | 30.0% | |
| TGGGTTTATGAAGGAAAAAA+AGG | + | chr2_2:60914320-60914339 | None:intergenic | 30.0% | |
| GTGAAATTTCACAAGTATGA+TGG | + | chr2_2:60914340-60914359 | None:intergenic | 30.0% | |
| TACAAGTGATTGTAACATGT+GGG | - | chr2_2:60914584-60914603 | Msa0262170:intron | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | + | chr2_2:60914716-60914735 | None:intergenic | 30.0% | |
| ! | GCAGCTTTAATATAATGCAA+AGG | + | chr2_2:60914797-60914816 | None:intergenic | 30.0% |
| ATTAAAGCTGCAATTGCAAT+TGG | - | chr2_2:60914806-60914825 | Msa0262170:intron | 30.0% | |
| !! | GTGATGATGTAAAACTTTTG+AGG | - | chr2_2:60914996-60915015 | Msa0262170:intron | 30.0% |
| GAAAGACTAAATCATGTTTC+TGG | - | chr2_2:60915175-60915194 | Msa0262170:intron | 30.0% | |
| ! | TTTAAAACAAATCGCACGTT+TGG | + | chr2_2:60915213-60915232 | None:intergenic | 30.0% |
| CCAAATTGTAACAAAGTTTG+CGG | + | chr2_2:60915395-60915414 | None:intergenic | 30.0% | |
| ! | TTAAGGATTTGGTAAACTCA+TGG | + | chr2_2:60915546-60915565 | None:intergenic | 30.0% |
| TTCAACCAAAGTCGAAAGAA+AGG | - | chr2_2:60913130-60913149 | Msa0262170:CDS | 35.0% | |
| AACAACCTTTCTTTCGACTT+TGG | + | chr2_2:60913138-60913157 | None:intergenic | 35.0% | |
| !! | TGCAGGGGTTTTATCAATTT+GGG | + | chr2_2:60913899-60913918 | None:intergenic | 35.0% |
| !! | TTGCAGGGGTTTTATCAATT+TGG | + | chr2_2:60913900-60913919 | None:intergenic | 35.0% |
| !! | TCTGACAAATTGATTTGCAG+GGG | + | chr2_2:60913914-60913933 | None:intergenic | 35.0% |
| !! | CTCTGACAAATTGATTTGCA+GGG | + | chr2_2:60913915-60913934 | None:intergenic | 35.0% |
| GATGAAGAAGATAGTTTCGT+AGG | + | chr2_2:60914057-60914076 | None:intergenic | 35.0% | |
| ! | GGTTGGTTCAAAGATTTGAA+TGG | + | chr2_2:60914269-60914288 | None:intergenic | 35.0% |
| !! | CAAGTATGATGGGTTTATGA+AGG | + | chr2_2:60914329-60914348 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_2:60914421-60914440 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_2:60914420-60914439 | Msa0262170:intron | 35.0% | |
| CCAACTTTAGATTTGTCTCT+AGG | + | chr2_2:60914465-60914484 | None:intergenic | 35.0% | |
| ! | CCTAGAGACAAATCTAAAGT+TGG | - | chr2_2:60914462-60914481 | Msa0262170:intron | 35.0% |
| GTTACAATCACTTGTAGAGT+GGG | + | chr2_2:60914580-60914599 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2_2:60914581-60914600 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2_2:60914583-60914602 | Msa0262170:intron | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2_2:60914585-60914604 | Msa0262170:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_2:60914673-60914692 | Msa0262170:intron | 35.0% | |
| ! | TATGCTCGAAATTGAGTTGT+AGG | - | chr2_2:60915106-60915125 | Msa0262170:intron | 35.0% |
| CCGCAAACTTTGTTACAATT+TGG | - | chr2_2:60915392-60915411 | Msa0262170:CDS | 35.0% | |
| GAGCAATCAAAATAAGTGAG+AGG | - | chr2_2:60915414-60915433 | Msa0262170:CDS | 35.0% | |
| AGGTTGAAAGAGTTTGTGAA+CGG | - | chr2_2:60915434-60915453 | Msa0262170:CDS | 35.0% | |
| ATTTCAAGATCCCACAATTG+AGG | + | chr2_2:60915485-60915504 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_2:60915485-60915504 | Msa0262170:five_prime_UTR | 35.0% | |
| TTGAAATTGGATCTGAGAGT+TGG | - | chr2_2:60915498-60915517 | Msa0262170:five_prime_UTR | 35.0% | |
| TGAAATTGGATCTGAGAGTT+GGG | - | chr2_2:60915499-60915518 | Msa0262170:five_prime_UTR | 35.0% | |
| CTTTCGACTTTGGTTGAAGA+AGG | + | chr2_2:60913128-60913147 | None:intergenic | 40.0% | |
| ! | GAGAGTTGAGTTTGGAATAG+AGG | + | chr2_2:60913190-60913209 | None:intergenic | 40.0% |
| AGGAAGAAGAGAGTTGAGTT+TGG | + | chr2_2:60913198-60913217 | None:intergenic | 40.0% | |
| GATGGAAATAATGCGACATG+TGG | - | chr2_2:60913506-60913525 | Msa0262170:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr2_2:60913701-60913720 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr2_2:60913724-60913743 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr2_2:60913727-60913746 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr2_2:60913735-60913754 | Msa0262170:intron | 40.0% | |
| ACGTAACATACCACAAGCTA+AGG | - | chr2_2:60913820-60913839 | Msa0262170:intron | 40.0% | |
| !! | GATAGTTTAGCCTTAGCTTG+TGG | + | chr2_2:60913833-60913852 | None:intergenic | 40.0% |
| !! | CAGGGGTTTTATCAATTTGG+GGG | + | chr2_2:60913897-60913916 | None:intergenic | 40.0% |
| !! | GCAGGGGTTTTATCAATTTG+GGG | + | chr2_2:60913898-60913917 | None:intergenic | 40.0% |
| !! | CCTCTGACAAATTGATTTGC+AGG | + | chr2_2:60913916-60913935 | None:intergenic | 40.0% |
| CCTGCAAATCAATTTGTCAG+AGG | - | chr2_2:60913913-60913932 | Msa0262170:CDS | 40.0% | |
| TTTGTCAGAGGTCAAAAACC+TGG | - | chr2_2:60913925-60913944 | Msa0262170:CDS | 40.0% | |
| !! | CGCGTGCAAAATTAGTTTGT+TGG | + | chr2_2:60914083-60914102 | None:intergenic | 40.0% |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_2:60914427-60914446 | None:intergenic | 40.0% | |
| AGAGTTTGTGAACGGATCTA+TGG | - | chr2_2:60915442-60915461 | Msa0262170:CDS | 40.0% | |
| GAGTTTGTGAACGGATCTAT+GGG | - | chr2_2:60915443-60915462 | Msa0262170:CDS | 40.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr2_2:60913707-60913726 | None:intergenic | 45.0% |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_2:60914705-60914724 | Msa0262170:intron | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | - | chr2_2:60915471-60915490 | Msa0262170:five_prime_UTR | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | - | chr2_2:60915472-60915491 | Msa0262170:five_prime_UTR | 45.0% | |
| !!! | GATAATTTTTTTTATAATAT+TGG | + | chr2_2:60913311-60913330 | None:intergenic | 5.0% |
| !! | ATATATATATTTCTTAATTA+AGG | + | chr2_2:60915563-60915582 | None:intergenic | 5.0% |
| AGCCACACCTCCTTGAATTG+TGG | - | chr2_2:60913714-60913733 | Msa0262170:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr2_2:60913719-60913738 | None:intergenic | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_2:60914645-60914664 | Msa0262170:intron | 50.0% | |
| GAACGGATCTATGGGCGATG+TGG | - | chr2_2:60915451-60915470 | Msa0262170:exon | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60912970 | 60915591 | 60912970 | ID=Msa0262170;Name=Msa0262170 |
| chr2_2 | mRNA | 60912970 | 60915591 | 60912970 | ID=Msa0262170-mRNA-1;Parent=Msa0262170;Name=Msa0262170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=128|1|1|1|1|1|3|26|210 |
| chr2_2 | exon | 60912970 | 60913172 | 60912970 | ID=Msa0262170-mRNA-1:exon:18765;Parent=Msa0262170-mRNA-1 |
| chr2_2 | exon | 60913835 | 60914155 | 60913835 | ID=Msa0262170-mRNA-1:exon:18764;Parent=Msa0262170-mRNA-1 |
| chr2_2 | exon | 60915329 | 60915591 | 60915329 | ID=Msa0262170-mRNA-1:exon:18763;Parent=Msa0262170-mRNA-1 |
| chr2_2 | five_prime_UTR | 60915464 | 60915591 | 60915464 | ID=Msa0262170-mRNA-1:five_prime_utr;Parent=Msa0262170-mRNA-1 |
| chr2_2 | CDS | 60915329 | 60915463 | 60915329 | ID=Msa0262170-mRNA-1:cds;Parent=Msa0262170-mRNA-1 |
| chr2_2 | CDS | 60913835 | 60914155 | 60913835 | ID=Msa0262170-mRNA-1:cds;Parent=Msa0262170-mRNA-1 |
| chr2_2 | CDS | 60912996 | 60913172 | 60912996 | ID=Msa0262170-mRNA-1:cds;Parent=Msa0262170-mRNA-1 |
| chr2_2 | three_prime_UTR | 60912970 | 60912995 | 60912970 | ID=Msa0262170-mRNA-1:three_prime_utr;Parent=Msa0262170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
