AlfalfaGEDB | Msa0262740

M. sativa cultivar zhongmu-4 / Msa0262740

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262740	XP_013465233.1	98.381	247	4	0	1	247	1	247	8.86e-176	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262740	sp\|Q9S7Y1\|BH030_ARATH	41.327	196	107	5	45	236	160	351	2.90e-32	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262740	A0A072VCU0	98.381	247	4	0	1	247	1	247	4.23e-176	493

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TFs/TRs:

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Gene ID	Type	Classification
Msa0262740	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262740	MtrunA17_Chr2g0325521	98.381	247	4	0	1	247	1	247	8.15e-180	493
Msa0262740	MtrunA17_Chr4g0041051	72.656	256	61	3	1	247	1	256	3.18e-122	348
Msa0262740	MtrunA17_Chr4g0045901	44.262	244	125	6	2	235	13	255	6.84e-50	164
Msa0262740	MtrunA17_Chr7g0255961	47.253	182	86	4	54	234	70	242	4.44e-42	144
Msa0262740	MtrunA17_Chr1g0198801	40.594	202	109	3	45	242	144	338	3.03e-34	125
Msa0262740	MtrunA17_Chr3g0113721	33.333	201	115	5	46	234	26	219	5.60e-31	114
Msa0262740	MtrunA17_Chr5g0412371	38.462	143	74	3	54	188	40	176	2.56e-26	101
Msa0262740	MtrunA17_Chr5g0427361	40.606	165	72	2	49	188	27	190	1.55e-24	98.2
Msa0262740	MtrunA17_Chr2g0283714	51.250	80	36	1	91	170	16	92	1.56e-19	81.6
Msa0262740	MtrunA17_Chr5g0411341	40.244	82	49	0	28	109	459	540	3.36e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262740	AT1G68810.1	41.327	196	107	5	45	236	160	351	2.95e-33	124
Msa0262740	AT3G25710.1	46.622	148	70	2	45	188	118	260	4.85e-31	117
Msa0262740	AT3G56770.1	38.857	175	98	4	51	223	37	204	1.74e-30	113
Msa0262740	AT2G40200.1	39.634	164	89	3	61	219	65	223	1.23e-29	112
Msa0262740	AT2G41130.1	40.571	175	96	3	51	223	59	227	4.78e-27	105
Msa0262740	AT4G38070.1	36.154	130	76	2	59	188	92	214	9.82e-18	80.1
Msa0262740	AT1G32640.1	37.624	101	60	2	33	130	421	521	1.12e-11	64.7
Msa0262740	AT5G46760.1	44.156	77	42	1	39	114	391	467	1.97e-11	63.9
Msa0262740	AT4G17880.1	40.789	76	45	0	39	114	393	468	2.20e-11	63.9

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Find 64 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACACAGTTCCCAAG+AGG	0.688172	2_2:+61778304	None:intergenic
AAACAACACAGTTCCCAAGA+GGG	0.661371	2_2:+61778305	None:intergenic
AAAGATTACTTCTTATAGTG+GGG	0.583347	2_2:+61778607	None:intergenic
AAAGCTTCAATACTTCTCTC+AGG	0.509056	2_2:+61778122	None:intergenic
AAGACAACGTTGGAAGAAGA+AGG	0.529141	2_2:+61778364	None:intergenic
AAGATTACTTCTTATAGTGG+GGG	0.618050	2_2:+61778608	None:intergenic
AAGGGCAGAGATTGCAACTT+TGG	0.372459	2_2:-61776921	Msa0262740:CDS
AATGATGCTCTAATTGAATA+AGG	0.233216	2_2:+61777016	None:intergenic
AATGCAGCACAAGCAAGTGA+AGG	0.627293	2_2:-61777106	Msa0262740:CDS
ACAATGAATGAACTCATTCT+AGG	0.319427	2_2:-61776566	Msa0262740:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTTTCCCCTCAAATATT+TGG	+	chr2_2:61777225-61777244	None:intergenic	30.0%
ACACTTTAACAGGGAATATA+AGG	-	chr2_2:61777432-61777451	Msa0262740:intron	30.0%
CATTCAAATGACCATAAAAG+AGG	+	chr2_2:61777463-61777482	None:intergenic	30.0%
TATAAGTCTTGAGCTATGAA+TGG	-	chr2_2:61777542-61777561	Msa0262740:intron	30.0%
AGTTAAATTGAGACAGTGAA+TGG	-	chr2_2:61777609-61777628	Msa0262740:intron	30.0%
GACTTCAAAAGTAAGCAAAA+TGG	+	chr2_2:61777667-61777686	None:intergenic	30.0%
TTGTGTAGACATGAATTTCA+TGG	+	chr2_2:61777871-61777890	None:intergenic	30.0%
ATAAGAGTTGAATCACAAGA+AGG	-	chr2_2:61778066-61778085	Msa0262740:CDS	30.0%
TTATGTTGTGAATACAAACC+CGG	-	chr2_2:61778126-61778145	Msa0262740:CDS	30.0%
CTTATATCAGACAATAAACC+GGG	+	chr2_2:61778147-61778166	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	61776515	61778628	61776515	ID=Msa0262740;Name=Msa0262740
chr2_2	mRNA	61776515	61778628	61776515	ID=Msa0262740-mRNA-1;Parent=Msa0262740;Name=Msa0262740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=328\|1\|1\|1\|1\|1\|2\|197\|247
chr2_2	exon	61776515	61777185	61776515	ID=Msa0262740-mRNA-1:exon:19005;Parent=Msa0262740-mRNA-1
chr2_2	exon	61778031	61778628	61778031	ID=Msa0262740-mRNA-1:exon:19004;Parent=Msa0262740-mRNA-1
chr2_2	five_prime_UTR	61778301	61778628	61778301	ID=Msa0262740-mRNA-1:five_prime_utr;Parent=Msa0262740-mRNA-1
chr2_2	CDS	61778031	61778300	61778031	ID=Msa0262740-mRNA-1:cds;Parent=Msa0262740-mRNA-1
chr2_2	CDS	61776712	61777185	61776712	ID=Msa0262740-mRNA-1:cds;Parent=Msa0262740-mRNA-1
chr2_2	three_prime_UTR	61776515	61776711	61776515	ID=Msa0262740-mRNA-1:three_prime_utr;Parent=Msa0262740-mRNA-1

Gene Sequence

>Msa0262740

ATGGAAATGGATGATTTTGCTTCAAGTAGAATGAATGATGGTTGTTTTCAAGGTGTAAATGGAAGTGGATATGGTTCATCTTCTTCACTGGTTTTGGATAGAGAAAAAGGAGAGCTTGTGGAGGCAGCTGTGAAATTGGAACGCAAAGGTGTGTCGCCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCAGAGAGGAGGAGAAGAGCAAGAATTAATTCACATCTTGATACACTTCGTAGTGTTATTCCTGGTGCTAATAAGTTGGACAAAGCATCCTTACTGGCTGAAGTTATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCAAGTGAAGGATTAATTATTCCAAAAGACAGTGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTACCCTTATTCAATTAGAGCATCATTATGTTGTGAATACAAACCCGGTTTATTGTCTGATATAAGAAAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCAGAGATTGCAACTTTGGGAGGTAGAATGAAGAATGTCTTTGTCATAATTAGCTGCAAAGAACAGAATTTTGAAGATGCCGAGTATCGACAGTTTCTTGCTGGATCGGTTCATCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAGATATCTTAGAAACTAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGTGATTTCTTATAA

Protein sequence

>Msa0262740

MEMDDFASSRMNDGCFQGVNGSGYGSSSSLVLDREKGELVEAAVKLERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRSVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLIIPKDSDEIRVESQEGGLNGYPYSIRASLCCEYKPGLLSDIRKALDALHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSLGDFL*