AlfalfaGEDB | Msa0263190

M. sativa cultivar zhongmu-4 / Msa0263190

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263190	XP_013468858.1	47.755	245	65	7	1	244	1	183	1.54e-39	150
Msa0263190	XP_013468858.1	61.878	181	35	5	249	398	17	194	6.55e-59	200

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263190	sp\|Q681X4\|ZAT5_ARATH	42.208	154	59	6	271	396	108	259	5.19e-24	103
Msa0263190	sp\|Q681X4\|ZAT5_ARATH	33.766	154	64	6	76	227	106	223	3.64e-11	67.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263190	A0A072VXX0	47.755	245	65	7	1	244	1	183	7.34e-40	150
Msa0263190	A0A072VXX0	61.878	181	35	5	249	398	17	194	3.13e-59	200

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TFs/TRs:

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Gene ID	Type	Classification
Msa0263190	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263190	MtrunA17_Chr1g0188911	61.878	181	35	5	249	398	17	194	6.02e-63	200
Msa0263190	MtrunA17_Chr1g0188911	47.755	245	65	7	1	244	1	183	1.41e-43	150
Msa0263190	MtrunA17_Chr1g0188901	67.485	163	41	4	244	398	28	186	6.16e-52	172
Msa0263190	MtrunA17_Chr1g0188901	55.618	178	35	5	1	137	1	175	1.48e-36	131
Msa0263190	MtrunA17_Chr1g0188901	52.000	150	28	4	137	244	28	175	3.53e-23	95.9
Msa0263190	MtrunA17_Chr1g0197281	50.000	168	51	7	259	396	135	299	6.85e-35	132
Msa0263190	MtrunA17_Chr1g0197281	38.095	168	66	6	84	245	155	290	3.34e-18	85.1
Msa0263190	MtrunA17_Chr1g0197281	61.765	68	17	2	77	138	226	290	1.04e-15	77.8
Msa0263190	MtrunA17_Chr7g0263121	41.935	124	53	5	278	397	44	152	1.55e-19	85.5
Msa0263190	MtrunA17_Chr1g0182161	38.710	124	60	3	278	397	39	150	1.31e-18	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263190	AT3G10470.1	42.690	171	51	7	273	396	177	347	1.31e-26	110
Msa0263190	AT2G28200.1	42.208	154	59	6	271	396	108	259	5.27e-25	103
Msa0263190	AT2G28200.1	33.766	154	64	6	76	227	106	223	3.70e-12	67.0
Msa0263190	AT5G04390.1	40.541	185	61	8	256	396	136	315	1.74e-24	103
Msa0263190	AT2G37430.1	39.850	133	57	5	271	397	40	155	7.77e-18	81.3
Msa0263190	AT5G03510.1	36.620	142	70	3	276	397	116	257	4.12e-17	81.6
Msa0263190	AT3G53600.1	28.902	173	101	5	228	398	1	153	2.98e-16	76.6
Msa0263190	AT5G59820.1	36.496	137	62	5	264	395	31	147	6.09e-15	72.4
Msa0263190	AT3G46090.1	36.585	123	63	2	276	394	38	149	1.09e-14	72.0
Msa0263190	AT3G46080.1	43.902	82	37	1	276	357	35	107	6.91e-14	69.7

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Find 125 sgRNAs with CRISPR-Local

Find 948 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGATAGGAGATTGTGG+GGG	0.541180	2_2:-62368706	None:intergenic
AAAGGGATAGGAGATTGTGG+GGG	0.541180	2_2:-62375499	None:intergenic
AAAGGGATAGGAGATTGTGG+GGG	0.541180	2_2:-62382286	None:intergenic
AACAACAAATCCAACGTTTA+TGG	0.181089	2_2:+62368955	Msa0263190:CDS
AACAACAAATCCAACGTTTA+TGG	0.181089	2_2:+62375745	Msa0263190:CDS
AACAACAAATCCAACGTTTA+TGG	0.181089	2_2:+62382532	Msa0263190:CDS
AACGAATGTCTCTTTGGATT+TGG	0.231339	2_2:+62382699	Msa0263190:CDS
AAGGGATAGGAGATTGTGGG+GGG	0.595859	2_2:-62368705	None:intergenic
AAGGGATAGGAGATTGTGGG+GGG	0.595859	2_2:-62375498	None:intergenic
AAGGGATAGGAGATTGTGGG+GGG	0.595859	2_2:-62382285	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGAAGAATAAGCAATGA+TGG	-	chr2_2:62368734-62368753	None:intergenic	30.0%
AACAACAAATCCAACGTTTA+TGG	+	chr2_2:62368955-62368974	Msa0263190:CDS	30.0%
ACAACAAATCCAACGTTTAT+GGG	+	chr2_2:62368956-62368975	Msa0263190:CDS	30.0%
AGAAAAAACGAATGTCTCTT+TGG	+	chr2_2:62369116-62369135	Msa0263190:intron	30.0%
TATCTTTGATCTTCTTAAGC+TGG	-	chr2_2:62369162-62369181	None:intergenic	30.0%
GTGATGAAATATTATGACTG+CGG	+	chr2_2:62369602-62369621	Msa0263190:intron	30.0%
AAACAAGAAAGTCAAAAGCA+AGG	+	chr2_2:62370007-62370026	Msa0263190:intron	30.0%
AACAAGAAAGTCAAAAGCAA+GGG	+	chr2_2:62370008-62370027	Msa0263190:intron	30.0%
TTCCTCAAAACTGAATATGA+AGG	+	chr2_2:62370108-62370127	Msa0263190:intron	30.0%
ATGAAGGAGATGAAAGAATT+AGG	+	chr2_2:62370124-62370143	Msa0263190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	62368613	62382744	62368613	ID=Msa0263190;Name=Msa0263190
chr2_2	mRNA	62368613	62382744	62368613	ID=Msa0263190-mRNA-1;Parent=Msa0263190;Name=Msa0263190-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0\|0\|0\|1\|0\|0\|5\|0\|398
chr2_2	exon	62368613	62368787	62368613	ID=Msa0263190-mRNA-1:exon:19285;Parent=Msa0263190-mRNA-1
chr2_2	exon	62368896	62369128	62368896	ID=Msa0263190-mRNA-1:exon:19286;Parent=Msa0263190-mRNA-1
chr2_2	exon	62375490	62375580	62375490	ID=Msa0263190-mRNA-1:exon:19287;Parent=Msa0263190-mRNA-1
chr2_2	exon	62375689	62375918	62375689	ID=Msa0263190-mRNA-1:exon:19288;Parent=Msa0263190-mRNA-1
chr2_2	exon	62382277	62382744	62382277	ID=Msa0263190-mRNA-1:exon:19289;Parent=Msa0263190-mRNA-1
chr2_2	CDS	62368613	62368787	62368613	ID=Msa0263190-mRNA-1:cds;Parent=Msa0263190-mRNA-1
chr2_2	CDS	62368896	62369128	62368896	ID=Msa0263190-mRNA-1:cds;Parent=Msa0263190-mRNA-1
chr2_2	CDS	62375490	62375580	62375490	ID=Msa0263190-mRNA-1:cds;Parent=Msa0263190-mRNA-1
chr2_2	CDS	62375689	62375918	62375689	ID=Msa0263190-mRNA-1:cds;Parent=Msa0263190-mRNA-1
chr2_2	CDS	62382277	62382744	62382277	ID=Msa0263190-mRNA-1:cds;Parent=Msa0263190-mRNA-1

Gene Sequence

>Msa0263190

ATGGAAGCATCTCACGAACAACAACTCTCACTAAACTCTACAGAACACACCATTAATGTCACCAAAGTGAATATAACTCAAAAGGTTATAAACCCCCCACAATCTCCTATCCCTTTCTCCATCATTGCTTATTCTTCTACTAGAGAAGGAGGAACAAGAACAAGAGAAAGTGCACGTCACAACAACAACACCAACACCACCTCCACCACCACTACCAACAACAACAACAACAACAACAACAAATCCAACGTTTATGGGTGCTCTATTTGTGGTTCTAAATTCACATCTGGCCAGGCACTTGGTGGCCATATGAACTTCCACCCTGCACCGGTGGAGGCGACCTCATTAACACCAATGGCTTTGGAACCAGACAAAGAAGATGAAGAACCACCTGCAGAAAAAACGAATGTTATAAACCCCCCACAATCTCCTATCCCTTTCTCCATCATTGCTTATTCTTCTACTAGAGAAGGAGGAACAAGAACAAGAGAAAGTGCACGTCACAACAACAACACCAACACCACCTCCACCACCACTACCAACAACAACAACAACAACAACAAATCCAACGTTTATGGGTGCTCTATTTGTGGTTCTAAATTCACATCTGGCCAGGCCCTTGGTGGCCATATGAACTTCCACCCTGCACCGGTGGAGGCGACCTCATTAACACCAATGGCTTTGGAACCAGACAAAGAAGATGAAGAACCACCTGCAGAAAAAACGAATGTTATAAACCCCCCACAATCTCCTATCCCTTTCTCCATCATTGCTTATTCTTCTACTAGAGAAGGAGGAACAAGAACAAGAGAAAGTGCACGTTACAATGTGTATACATGCAAAACATGCAACAAAACATTCACTTCATTTCAAGCACTTGGAGGCCATAGAAAAGTTCACAAGAAGCCTAGAAAAGCTCATAGAAAAGGTCACAACAACAACACCAACACCACCTCCACCACCACTACCAACAACAACAACAACAACAACAAATCCAACGTTTATGGGTGCTCTATTTGTGGTTCTAAATTCACATCTGGCCAGGCACTTGGTGGCCATATGAACTTCCACCCTGCACCGGTGGAGGCGACCTCATTAACACCACTGGCTTTGGAACCAGACAAAGAAGATGAAGAACCACCTGCAGAAAAAACGAATGTCTCTTTGGATTTGGATCTCAACCTTCCTCCAGCTTAA

Protein sequence

>Msa0263190

MEASHEQQLSLNSTEHTINVTKVNITQKVINPPQSPIPFSIIAYSSTREGGTRTRESARHNNNTNTTSTTTTNNNNNNNNKSNVYGCSICGSKFTSGQALGGHMNFHPAPVEATSLTPMALEPDKEDEEPPAEKTNVINPPQSPIPFSIIAYSSTREGGTRTRESARHNNNTNTTSTTTTNNNNNNNKSNVYGCSICGSKFTSGQALGGHMNFHPAPVEATSLTPMALEPDKEDEEPPAEKTNVINPPQSPIPFSIIAYSSTREGGTRTRESARYNVYTCKTCNKTFTSFQALGGHRKVHKKPRKAHRKGHNNNTNTTSTTTTNNNNNNNKSNVYGCSICGSKFTSGQALGGHMNFHPAPVEATSLTPLALEPDKEDEEPPAEKTNVSLDLDLNLPPA*