Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263700 | KEH39362.1 | 94.231 | 624 | 27 | 4 | 1 | 623 | 1 | 616 | 0.0 | 1168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263700 | sp|Q9SJJ3|BLH8_ARATH | 50.172 | 291 | 113 | 4 | 238 | 525 | 251 | 512 | 1.44e-80 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263700 | A0A072VC89 | 94.231 | 624 | 27 | 4 | 1 | 623 | 1 | 616 | 0.0 | 1168 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0263700 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263700 | MtrunA17_Chr2g0327021 | 94.231 | 624 | 27 | 4 | 1 | 623 | 1 | 616 | 0.0 | 1168 |
| Msa0263700 | MtrunA17_Chr4g0028701 | 48.174 | 438 | 164 | 13 | 222 | 619 | 218 | 632 | 2.54e-116 | 361 |
| Msa0263700 | MtrunA17_Chr7g0240371 | 47.292 | 277 | 123 | 5 | 236 | 512 | 124 | 377 | 1.30e-76 | 253 |
| Msa0263700 | MtrunA17_Chr4g0008591 | 48.951 | 286 | 110 | 6 | 242 | 520 | 189 | 445 | 5.41e-75 | 251 |
| Msa0263700 | MtrunA17_Chr8g0373801 | 43.772 | 281 | 133 | 5 | 245 | 514 | 384 | 650 | 5.04e-65 | 229 |
| Msa0263700 | MtrunA17_Chr5g0403251 | 41.606 | 274 | 137 | 6 | 245 | 507 | 330 | 591 | 4.25e-61 | 216 |
| Msa0263700 | MtrunA17_Chr1g0177751 | 42.912 | 261 | 129 | 3 | 248 | 501 | 160 | 407 | 8.70e-60 | 211 |
| Msa0263700 | MtrunA17_Chr8g0387321 | 45.769 | 260 | 124 | 5 | 249 | 503 | 185 | 432 | 9.14e-60 | 210 |
| Msa0263700 | MtrunA17_Chr4g0025521 | 41.401 | 314 | 155 | 8 | 249 | 554 | 217 | 509 | 2.55e-59 | 211 |
| Msa0263700 | MtrunA17_Chr7g0267481 | 47.345 | 226 | 98 | 4 | 302 | 524 | 232 | 439 | 2.91e-59 | 210 |
| Msa0263700 | MtrunA17_Chr3g0141941 | 39.731 | 297 | 127 | 7 | 245 | 520 | 158 | 423 | 1.91e-58 | 204 |
| Msa0263700 | MtrunA17_Chr1g0155681 | 42.958 | 284 | 124 | 7 | 253 | 521 | 174 | 434 | 1.59e-57 | 204 |
| Msa0263700 | MtrunA17_Chr3g0141931 | 39.344 | 305 | 142 | 9 | 231 | 522 | 154 | 428 | 1.78e-55 | 194 |
| Msa0263700 | MtrunA17_Chr1g0151681 | 35.577 | 208 | 114 | 4 | 312 | 518 | 315 | 503 | 3.57e-34 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263700 | AT2G27990.1 | 50.172 | 291 | 113 | 4 | 238 | 525 | 251 | 512 | 1.46e-81 | 268 |
| Msa0263700 | AT5G02030.1 | 46.821 | 346 | 139 | 12 | 185 | 510 | 98 | 418 | 2.60e-72 | 243 |
| Msa0263700 | AT4G36870.2 | 46.067 | 267 | 123 | 6 | 249 | 507 | 312 | 565 | 2.36e-65 | 228 |
| Msa0263700 | AT4G36870.1 | 46.067 | 267 | 123 | 6 | 249 | 507 | 312 | 565 | 2.36e-65 | 228 |
| Msa0263700 | AT4G34610.2 | 44.295 | 298 | 137 | 8 | 250 | 542 | 141 | 414 | 3.20e-65 | 223 |
| Msa0263700 | AT4G34610.4 | 44.295 | 298 | 137 | 8 | 250 | 542 | 141 | 414 | 3.20e-65 | 223 |
| Msa0263700 | AT4G34610.3 | 44.295 | 298 | 137 | 8 | 250 | 542 | 141 | 414 | 3.20e-65 | 223 |
| Msa0263700 | AT4G34610.1 | 44.295 | 298 | 137 | 8 | 250 | 542 | 141 | 414 | 3.20e-65 | 223 |
| Msa0263700 | AT1G75410.1 | 39.306 | 346 | 191 | 7 | 168 | 507 | 81 | 413 | 3.43e-64 | 220 |
| Msa0263700 | AT1G75410.2 | 39.306 | 346 | 191 | 7 | 168 | 507 | 81 | 413 | 3.43e-64 | 220 |
| Msa0263700 | AT2G16400.1 | 41.319 | 288 | 143 | 7 | 244 | 529 | 109 | 372 | 1.83e-62 | 214 |
| Msa0263700 | AT2G23760.2 | 43.911 | 271 | 132 | 5 | 245 | 507 | 233 | 491 | 4.76e-62 | 217 |
| Msa0263700 | AT2G23760.1 | 43.911 | 271 | 132 | 5 | 245 | 507 | 233 | 491 | 4.76e-62 | 217 |
| Msa0263700 | AT2G23760.3 | 43.911 | 271 | 132 | 5 | 245 | 507 | 233 | 491 | 4.76e-62 | 217 |
| Msa0263700 | AT1G19700.1 | 42.701 | 274 | 130 | 4 | 245 | 507 | 161 | 418 | 4.57e-61 | 212 |
| Msa0263700 | AT1G19700.3 | 42.701 | 274 | 130 | 4 | 245 | 507 | 161 | 418 | 4.57e-61 | 212 |
| Msa0263700 | AT1G19700.5 | 42.701 | 274 | 130 | 4 | 245 | 507 | 161 | 418 | 4.57e-61 | 212 |
| Msa0263700 | AT1G19700.4 | 42.701 | 274 | 130 | 4 | 245 | 507 | 161 | 418 | 4.57e-61 | 212 |
| Msa0263700 | AT1G19700.2 | 42.701 | 274 | 130 | 4 | 245 | 507 | 161 | 418 | 4.57e-61 | 212 |
| Msa0263700 | AT2G35940.3 | 52.821 | 195 | 84 | 2 | 307 | 501 | 260 | 446 | 1.70e-59 | 211 |
| Msa0263700 | AT2G35940.1 | 52.821 | 195 | 84 | 2 | 307 | 501 | 260 | 446 | 1.70e-59 | 211 |
| Msa0263700 | AT2G35940.2 | 52.821 | 195 | 84 | 2 | 307 | 501 | 260 | 446 | 1.70e-59 | 211 |
| Msa0263700 | AT2G27220.1 | 38.365 | 318 | 144 | 8 | 220 | 537 | 56 | 321 | 8.35e-53 | 187 |
| Msa0263700 | AT2G27220.3 | 38.365 | 318 | 144 | 8 | 220 | 537 | 56 | 321 | 8.35e-53 | 187 |
| Msa0263700 | AT2G23760.4 | 36.842 | 323 | 132 | 6 | 245 | 507 | 233 | 543 | 1.75e-52 | 192 |
| Msa0263700 | AT4G36870.4 | 43.145 | 248 | 120 | 6 | 249 | 488 | 312 | 546 | 2.70e-52 | 189 |
| Msa0263700 | AT5G41410.1 | 46.392 | 194 | 97 | 2 | 314 | 507 | 272 | 458 | 8.14e-52 | 189 |
| Msa0263700 | AT4G36870.3 | 42.683 | 246 | 120 | 6 | 249 | 486 | 312 | 544 | 6.45e-51 | 185 |
| Msa0263700 | AT1G75410.3 | 37.117 | 326 | 186 | 7 | 168 | 487 | 81 | 393 | 2.26e-50 | 180 |
| Msa0263700 | AT2G27990.2 | 45.652 | 230 | 94 | 4 | 238 | 466 | 251 | 450 | 4.32e-50 | 180 |
| Msa0263700 | AT1G75430.1 | 46.354 | 192 | 85 | 4 | 321 | 507 | 91 | 269 | 7.95e-50 | 175 |
| Msa0263700 | AT2G27220.2 | 36.607 | 336 | 143 | 9 | 220 | 537 | 56 | 339 | 4.36e-49 | 177 |
| Msa0263700 | AT4G32980.1 | 30.496 | 282 | 170 | 6 | 245 | 523 | 197 | 455 | 1.13e-36 | 143 |
| Msa0263700 | AT4G32980.2 | 30.496 | 282 | 170 | 6 | 245 | 523 | 197 | 455 | 1.13e-36 | 143 |
| Msa0263700 | AT1G75430.2 | 38.816 | 152 | 75 | 4 | 320 | 466 | 90 | 228 | 1.04e-24 | 105 |
Find 121 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATGTTGTCACCAATTT+TGG | 0.122717 | 2_2:+63311706 | None:intergenic |
| CATTCAGAACTGAGTGATTT+TGG | 0.129421 | 2_2:-63312309 | Msa0263700:CDS |
| TAAGAGTTCAAGATTCTTAA+AGG | 0.151069 | 2_2:-63311761 | Msa0263700:CDS |
| TGACTTTGTAGGATGATTAT+TGG | 0.203952 | 2_2:-63309135 | Msa0263700:three_prime_UTR |
| AATTCTCTTTCTTATGTATA+TGG | 0.222196 | 2_2:-63312216 | Msa0263700:CDS |
| TAGAGAGAAGAGGTATAAAT+TGG | 0.239051 | 2_2:-63309311 | Msa0263700:CDS |
| AATGATAAGCTTTGTGGTTT+TGG | 0.247497 | 2_2:+63312030 | None:intergenic |
| CTAGCAGGACTCTTTGAATT+AGG | 0.255997 | 2_2:+63311841 | None:intergenic |
| CTTAGACATCTTGACTTTGT+AGG | 0.257836 | 2_2:-63309146 | Msa0263700:three_prime_UTR |
| TTCGCAGGACTTCACTTATA+TGG | 0.258775 | 2_2:+63310401 | None:intergenic |
| TTCAATGCCTTATCCATTCT+AGG | 0.259330 | 2_2:+63309445 | None:intergenic |
| ATAGTAGCATAACCAGTAAA+AGG | 0.261980 | 2_2:+63311787 | None:intergenic |
| GCTTTATTCTGCTGATAATC+TGG | 0.263343 | 2_2:+63311574 | None:intergenic |
| CCTTTGGAGTATCAAGAATT+AGG | 0.272397 | 2_2:-63312399 | Msa0263700:CDS |
| CATTATCATCAGCAACATTA+TGG | 0.277940 | 2_2:-63312342 | Msa0263700:CDS |
| GTTGCACAAAATTTGTTAGA+TGG | 0.282371 | 2_2:-63311739 | Msa0263700:CDS |
| GTCAACTAGTTTAGTACTAT+TGG | 0.285954 | 2_2:+63310354 | None:intergenic |
| GTGCCATAAGTTCTCTCATT+TGG | 0.291427 | 2_2:+63309490 | None:intergenic |
| GATTTGAAATAGCATTATTC+AGG | 0.305780 | 2_2:+63310431 | None:intergenic |
| GATTAATGCAGGTATCAAAT+TGG | 0.308082 | 2_2:-63309606 | Msa0263700:intron |
| TAGTACTAGTTATGGAAATC+TGG | 0.321419 | 2_2:-63311821 | Msa0263700:CDS |
| AAGAATGGATGGAACACTTA+TGG | 0.325450 | 2_2:-63309272 | Msa0263700:CDS |
| CATTTCTGACTCTGACCTAT+TGG | 0.330237 | 2_2:+63312119 | None:intergenic |
| AAACCATTTGCATCTGTTGA+TGG | 0.333209 | 2_2:+63310542 | None:intergenic |
| AGTAGCCAACACATGTTTAT+CGG | 0.338043 | 2_2:+63310019 | None:intergenic |
| TATGGTGCTGAAAAGCAATT+AGG | 0.340053 | 2_2:-63312198 | Msa0263700:CDS |
| ATCCACAACAACAGCATGTT+TGG | 0.346556 | 2_2:-63310249 | Msa0263700:CDS |
| TGTAATGTGTTCTTGACTCT+TGG | 0.346801 | 2_2:-63309103 | Msa0263700:three_prime_UTR |
| AATGTTTCCTAGTGCTGATT+GGG | 0.352550 | 2_2:-63311629 | Msa0263700:CDS |
| GGCTTTGATCCATGCATCTT+AGG | 0.352803 | 2_2:+63310314 | None:intergenic |
| TCATGTCCACTATGTCTATA+TGG | 0.356435 | 2_2:+63309241 | None:intergenic |
| TACTGCTACTTCAAATCCTT+TGG | 0.357101 | 2_2:-63312415 | Msa0263700:CDS |
| CAATGTTTCCTAGTGCTGAT+TGG | 0.357408 | 2_2:-63311630 | Msa0263700:CDS |
| ATTTCTGTTGATGAATAAAC+TGG | 0.361530 | 2_2:+63312453 | None:intergenic |
| ATCAACTCACTGATCAATAT+TGG | 0.368498 | 2_2:-63312257 | Msa0263700:CDS |
| AGAATCGCCACTGCACGTTC+TGG | 0.377371 | 2_2:+63310208 | None:intergenic |
| GAATCAGAATAATTCTTTGC+AGG | 0.380802 | 2_2:-63312163 | Msa0263700:CDS |
| GTAATGTGTTCTTGACTCTT+GGG | 0.385880 | 2_2:-63309102 | Msa0263700:three_prime_UTR |
| CATGTGTTGGCTACTCAAAC+TGG | 0.395238 | 2_2:-63310011 | Msa0263700:CDS |
| AGTCCAAATGAGAGAACTTA+TGG | 0.398547 | 2_2:-63309493 | Msa0263700:CDS |
| ATTTGGACTGCAATTCTCAT+TGG | 0.400633 | 2_2:+63309507 | None:intergenic |
| AGTCCTGCTAGTACTAGTTA+TGG | 0.414886 | 2_2:-63311829 | Msa0263700:CDS |
| CAAATTCAATGTATGGAACT+TGG | 0.416249 | 2_2:-63309391 | Msa0263700:CDS |
| TCCACAATCTCTAGAAATGA+TGG | 0.429326 | 2_2:+63311900 | None:intergenic |
| TGTTGCATCATTAACCTACT+TGG | 0.429908 | 2_2:+63312363 | None:intergenic |
| TGAAAATCAAATTCAATGTA+TGG | 0.431807 | 2_2:-63309398 | Msa0263700:CDS |
| TTTCATTGACATTAGAACTT+AGG | 0.436493 | 2_2:-63309190 | Msa0263700:exon |
| TTGCACAAAATTTGTTAGAT+GGG | 0.442823 | 2_2:-63311738 | Msa0263700:CDS |
| ACAAAAGAATAGACCTGAAA+AGG | 0.450106 | 2_2:-63310290 | Msa0263700:CDS |
| ACTCTTGGGCATTGAAATGA+AGG | 0.451673 | 2_2:-63309088 | None:intergenic |
| CATGATGTTGTGAGATCACT+TGG | 0.453466 | 2_2:-63309223 | Msa0263700:CDS |
| GAACTTAGGCATGGTGTTGA+AGG | 0.456190 | 2_2:-63309176 | Msa0263700:three_prime_UTR |
| GAAACTGAGGTTGCTTCTAA+AGG | 0.458889 | 2_2:-63311676 | Msa0263700:CDS |
| TCCATCATTTCTAGAGATTG+TGG | 0.465297 | 2_2:-63311901 | Msa0263700:CDS |
| CTCATGCAGCCAGCCTAGAA+TGG | 0.471153 | 2_2:-63309458 | Msa0263700:CDS |
| AGCTACTCCTTACATCAGTC+TGG | 0.473021 | 2_2:-63310485 | Msa0263700:CDS |
| TCATCCTTTGAATCAGTAGC+AGG | 0.475962 | 2_2:-63310517 | Msa0263700:CDS |
| ATGCCTTATCCATTCTAGGC+TGG | 0.476270 | 2_2:+63309449 | None:intergenic |
| AAACTGAGGTTGCTTCTAAA+GGG | 0.476654 | 2_2:-63311675 | Msa0263700:CDS |
| GAGAACTTATGGCACTGAAG+TGG | 0.478183 | 2_2:-63309482 | Msa0263700:CDS |
| CAGCCAGCCTAGAATGGATA+AGG | 0.478775 | 2_2:-63309452 | Msa0263700:CDS |
| AGACCTGAAAAGGTTCCATC+AGG | 0.481595 | 2_2:-63310280 | Msa0263700:CDS |
| GTAGCTTAGGTGTTTCTTTG+CGG | 0.484731 | 2_2:-63311597 | Msa0263700:CDS |
| CAATAGGTCAGAGTCAGAAA+TGG | 0.486499 | 2_2:-63312118 | Msa0263700:CDS |
| AGTGATAATGATAAGCTTTG+TGG | 0.494435 | 2_2:+63312024 | None:intergenic |
| TCAAGTCTATCACTTCCAAT+AGG | 0.496873 | 2_2:-63312134 | Msa0263700:CDS |
| AACTGGTCTTTCGCGAAACC+AGG | 0.498308 | 2_2:-63309994 | Msa0263700:intron |
| TAGTTTAGTACTATTGGTTG+TGG | 0.502195 | 2_2:+63310360 | None:intergenic |
| CATGTTTATCGGTGTCTGTA+GGG | 0.506317 | 2_2:+63310030 | None:intergenic |
| GTAAATGAGTTAAATGAGGC+AGG | 0.508118 | 2_2:-63309343 | Msa0263700:CDS |
| AATAGTCAAGGAATTTGTGT+TGG | 0.508836 | 2_2:-63312078 | Msa0263700:CDS |
| TAGTAGCATAACCAGTAAAA+GGG | 0.510354 | 2_2:+63311788 | None:intergenic |
| AGTTCGCGTGTGGAAGCCTA+TGG | 0.514217 | 2_2:-63309569 | Msa0263700:CDS |
| TTAGTACTATTGGTTGTGGT+CGG | 0.518791 | 2_2:+63310364 | None:intergenic |
| AGTACTAGTTATGGAAATCT+GGG | 0.524187 | 2_2:-63311820 | Msa0263700:CDS |
| TTATTCCAACCACCAAGTCT+TGG | 0.528388 | 2_2:+63311866 | None:intergenic |
| CAGTGGCGATTCTAAGAGCT+TGG | 0.530709 | 2_2:-63310198 | Msa0263700:CDS |
| AGAACTTATGGCACTGAAGT+GGG | 0.532292 | 2_2:-63309481 | Msa0263700:CDS |
| ACATGTTTATCGGTGTCTGT+AGG | 0.537212 | 2_2:+63310029 | None:intergenic |
| ATGTGTACTTCTTCAACCAT+AGG | 0.539006 | 2_2:+63309553 | None:intergenic |
| TGTTGTGAGATCACTTGGAT+TGG | 0.539982 | 2_2:-63309218 | Msa0263700:CDS |
| ATCATCACACCAAGACTTGG+TGG | 0.541486 | 2_2:-63311875 | Msa0263700:CDS |
| ATGTGGAATGAGTTCAAGAA+TGG | 0.547007 | 2_2:-63309287 | Msa0263700:CDS |
| AAGACCTGCTACTGATTCAA+AGG | 0.547681 | 2_2:+63310513 | None:intergenic |
| GCTTATGTTCATGCAAGAAG+AGG | 0.548768 | 2_2:-63311548 | Msa0263700:intron |
| TTCAAAGCCAGACTGATGTA+AGG | 0.549663 | 2_2:+63310478 | None:intergenic |
| TATGGAAATCTGGGTCCACT+TGG | 0.554507 | 2_2:-63311811 | Msa0263700:CDS |
| GTATTGACAAATCATTTCGC+AGG | 0.555399 | 2_2:+63310386 | None:intergenic |
| AAATCACTCAGTTCTGAATG+AGG | 0.555669 | 2_2:+63312312 | None:intergenic |
| CACAACAACAGCATGTTTGG+AGG | 0.557669 | 2_2:-63310246 | Msa0263700:CDS |
| AAAATCATCACACCAAGACT+TGG | 0.561583 | 2_2:-63311878 | Msa0263700:CDS |
| GTACCATCAACAGATGCAAA+TGG | 0.563901 | 2_2:-63310545 | Msa0263700:CDS |
| AAGAGGTATAAATTGGAATG+TGG | 0.564061 | 2_2:-63309304 | Msa0263700:CDS |
| TCACACCAAGACTTGGTGGT+TGG | 0.564779 | 2_2:-63311871 | Msa0263700:CDS |
| TTTCCATAACTAGTACTAGC+AGG | 0.567280 | 2_2:+63311826 | None:intergenic |
| CCTAATTCTTGATACTCCAA+AGG | 0.577755 | 2_2:+63312399 | None:intergenic |
| CTCCAAACATGCTGTTGTTG+TGG | 0.578756 | 2_2:+63310247 | None:intergenic |
| GTGCAGCTTCAGAACCAAGT+AGG | 0.580096 | 2_2:-63312377 | Msa0263700:CDS |
| AGAGTCAAGAACACATTACA+AGG | 0.581049 | 2_2:+63309106 | None:intergenic |
| TCAGTGAGTTGATGTGGAGC+AGG | 0.585114 | 2_2:+63312267 | None:intergenic |
| ATGTTTCCTAGTGCTGATTG+GGG | 0.585973 | 2_2:-63311628 | Msa0263700:CDS |
| AGACACCGATAAACATGTGT+TGG | 0.590173 | 2_2:-63310024 | Msa0263700:CDS |
| AGTTAAATGAGGCAGGACAA+TGG | 0.596972 | 2_2:-63309336 | Msa0263700:CDS |
| TGTGGCAAGCCTAAGATGCA+TGG | 0.598137 | 2_2:-63310323 | Msa0263700:CDS |
| AGAAGTAAATGAGTTAAATG+AGG | 0.599304 | 2_2:-63309347 | Msa0263700:CDS |
| CTTATGCATCATAATAGTCA+AGG | 0.601239 | 2_2:-63312090 | Msa0263700:CDS |
| TTAATGCTCGAGTTCGCGTG+TGG | 0.602257 | 2_2:-63309579 | Msa0263700:CDS |
| GGAATGAGTTCAAGAATGGA+TGG | 0.604592 | 2_2:-63309283 | Msa0263700:CDS |
| TAATAATATTACACAAAACA+AGG | 0.606372 | 2_2:-63311995 | Msa0263700:CDS |
| ACTAGTTGACACTAATAATG+TGG | 0.612366 | 2_2:-63310341 | Msa0263700:CDS |
| TATTGATCAGTGAGTTGATG+TGG | 0.613925 | 2_2:+63312261 | None:intergenic |
| GACAATGGAGTAGAGAGAAG+AGG | 0.622784 | 2_2:-63309321 | Msa0263700:CDS |
| ATGTGATGTTTCTGAAACTG+AGG | 0.624579 | 2_2:-63311689 | Msa0263700:CDS |
| TGTGGATCATGAAAACCTGA+TGG | 0.624654 | 2_2:+63310265 | None:intergenic |
| TTGACATTAGAACTTAGGCA+TGG | 0.626568 | 2_2:-63309185 | Msa0263700:exon |
| CAATCTCTAGAAATGATGGA+AGG | 0.631862 | 2_2:+63311904 | None:intergenic |
| AGGCTTTCCAGAACGTGCAG+TGG | 0.656796 | 2_2:-63310215 | Msa0263700:CDS |
| CGTTCTGGAAAGCCTCTCTG+AGG | 0.663932 | 2_2:+63310223 | None:intergenic |
| TAACCAGTAAAAGGGCCAAG+TGG | 0.664374 | 2_2:+63311796 | None:intergenic |
| TGTTTCCTAGTGCTGATTGG+GGG | 0.672245 | 2_2:-63311627 | Msa0263700:CDS |
| CATGTTTGGAGGCCTCAGAG+AGG | 0.725435 | 2_2:-63310235 | Msa0263700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAAAAAAAAAATCATA+AGG | - | chr2_2:63311792-63311811 | Msa0263700:CDS | 10.0% |
| !! | ACTTAAAACAAAAATTTAAA+AGG | + | chr2_2:63311834-63311853 | None:intergenic | 10.0% |
| !! | TAATAATATTACACAAAACA+AGG | - | chr2_2:63309604-63309623 | Msa0263700:intron | 15.0% |
| !! | AATTGCAAAGATAAATAAAT+TGG | - | chr2_2:63310257-63310276 | Msa0263700:CDS | 15.0% |
| !! | TATCTCTACAAATAATTATA+TGG | - | chr2_2:63310530-63310549 | Msa0263700:CDS | 15.0% |
| !! | AATATAAAAAATTTGTACCA+TGG | - | chr2_2:63310683-63310702 | Msa0263700:intron | 15.0% |
| !!! | ATGATAGTTATCATTTTTTT+TGG | - | chr2_2:63310956-63310975 | Msa0263700:intron | 15.0% |
| !!! | GATTTTTTTTTTTATAGATC+TGG | + | chr2_2:63311789-63311808 | None:intergenic | 15.0% |
| !! | AAATTTAAAAGGAATGAAAT+TGG | + | chr2_2:63311823-63311842 | None:intergenic | 15.0% |
| !! | TAAATAATCAAGTGTATTAT+AGG | + | chr2_2:63311921-63311940 | None:intergenic | 15.0% |
| !! | AATTCTCTTTCTTATGTATA+TGG | - | chr2_2:63309383-63309402 | Msa0263700:CDS | 20.0% |
| !!! | ATTTTTCTTCATATCACAAT+TGG | - | chr2_2:63310476-63310495 | Msa0263700:CDS | 20.0% |
| !! | ATAAAATTTGTATACTCTGT+TGG | - | chr2_2:63310575-63310594 | Msa0263700:intron | 20.0% |
| !!! | TAAAGTCAAAGTCATTTTAT+TGG | - | chr2_2:63310895-63310914 | Msa0263700:intron | 20.0% |
| !! | CTCAAGAATCAAATAAAATT+AGG | + | chr2_2:63310927-63310946 | None:intergenic | 20.0% |
| !!! | TTTCTATGTGTTATTTGTTA+AGG | - | chr2_2:63311493-63311512 | Msa0263700:intron | 20.0% |
| !!! | TCAATAGATTTTGTTACTTT+TGG | - | chr2_2:63311876-63311895 | Msa0263700:CDS | 20.0% |
| !! | TTAATTCATCAGATAAACAT+AGG | + | chr2_2:63311956-63311975 | None:intergenic | 20.0% |
| !! | ATGTTTATCTGATGAATTAA+TGG | - | chr2_2:63311956-63311975 | Msa0263700:CDS | 20.0% |
| !!! | ATACATTGAATTTGATTTTC+AGG | + | chr2_2:63312202-63312221 | None:intergenic | 20.0% |
| !! | TGAAAATCAAATTCAATGTA+TGG | - | chr2_2:63312201-63312220 | Msa0263700:CDS | 20.0% |
| !! | ATTTCTGTTGATGAATAAAC+TGG | + | chr2_2:63309149-63309168 | None:intergenic | 25.0% |
| !! | CTTATGTTTCTCATTTTGAA+GGG | - | chr2_2:63309627-63309646 | Msa0263700:intron | 25.0% |
| !!! | TTATGTTTCTCATTTTGAAG+GGG | - | chr2_2:63309628-63309647 | Msa0263700:intron | 25.0% |
| ! | TAAGAGTTCAAGATTCTTAA+AGG | - | chr2_2:63309838-63309857 | Msa0263700:intron | 25.0% |
| !!! | TTGCACAAAATTTGTTAGAT+GGG | - | chr2_2:63309861-63309880 | Msa0263700:intron | 25.0% |
| !! | TACAGTAACTTGTAAGTAAA+AGG | - | chr2_2:63310169-63310188 | Msa0263700:intron | 25.0% |
| !!! | GCAAGTTTTAATTTCTGAAA+AGG | - | chr2_2:63310231-63310250 | Msa0263700:CDS | 25.0% |
| !! | ATGATCTGTTAGATCATTTT+GGG | + | chr2_2:63310788-63310807 | None:intergenic | 25.0% |
| !! | TATGATCTGTTAGATCATTT+TGG | + | chr2_2:63310789-63310808 | None:intergenic | 25.0% |
| !!! | CTCTTATTTGTTTTGAAACT+TGG | - | chr2_2:63310854-63310873 | Msa0263700:intron | 25.0% |
| !! | GATTTGAAATAGCATTATTC+AGG | + | chr2_2:63311171-63311190 | None:intergenic | 25.0% |
| ! | TTAAGTAAATTCAAAGGAGT+AGG | + | chr2_2:63311637-63311656 | None:intergenic | 25.0% |
| ! | TCCTTTGAATTTACTTAAGT+TGG | - | chr2_2:63311639-63311658 | Msa0263700:CDS | 25.0% |
| ! | GAATTGTATATTGAGACATT+TGG | - | chr2_2:63311682-63311701 | Msa0263700:CDS | 25.0% |
| !! | AAAGTATTTGACCATTGTTA+TGG | + | chr2_2:63311732-63311751 | None:intergenic | 25.0% |
| !!! | TATTGATTTTCTTAGTATGC+AGG | + | chr2_2:63311862-63311881 | None:intergenic | 25.0% |
| ! | AATTTGATACCTGCATTAAT+CGG | + | chr2_2:63311994-63312013 | None:intergenic | 25.0% |
| ! | AGAAGTAAATGAGTTAAATG+AGG | - | chr2_2:63312252-63312271 | Msa0263700:CDS | 25.0% |
| ! | TTTCATTGACATTAGAACTT+AGG | - | chr2_2:63312409-63312428 | Msa0263700:CDS | 25.0% |
| CATTATCATCAGCAACATTA+TGG | - | chr2_2:63309257-63309276 | Msa0263700:CDS | 30.0% | |
| !! | AACTGAGTGATTTTGGAAAT+TGG | - | chr2_2:63309297-63309316 | Msa0263700:CDS | 30.0% |
| ATCAACTCACTGATCAATAT+TGG | - | chr2_2:63309342-63309361 | Msa0263700:CDS | 30.0% | |
| GAATCAGAATAATTCTTTGC+AGG | - | chr2_2:63309436-63309455 | Msa0263700:CDS | 30.0% | |
| CTTATGCATCATAATAGTCA+AGG | - | chr2_2:63309509-63309528 | Msa0263700:CDS | 30.0% | |
| AATAGTCAAGGAATTTGTGT+TGG | - | chr2_2:63309521-63309540 | Msa0263700:CDS | 30.0% | |
| !! | AATGATAAGCTTTGTGGTTT+TGG | + | chr2_2:63309572-63309591 | None:intergenic | 30.0% |
| ! | AGTGATAATGATAAGCTTTG+TGG | + | chr2_2:63309578-63309597 | None:intergenic | 30.0% |
| ! | GCTTATGTTTCTCATTTTGA+AGG | - | chr2_2:63309626-63309645 | Msa0263700:intron | 30.0% |
| !! | TATGTTTCTCATTTTGAAGG+GGG | - | chr2_2:63309629-63309648 | Msa0263700:intron | 30.0% |
| TAGTACTAGTTATGGAAATC+TGG | - | chr2_2:63309778-63309797 | Msa0263700:intron | 30.0% | |
| AGTACTAGTTATGGAAATCT+GGG | - | chr2_2:63309779-63309798 | Msa0263700:intron | 30.0% | |
| TAGTAGCATAACCAGTAAAA+GGG | + | chr2_2:63309814-63309833 | None:intergenic | 30.0% | |
| ATAGTAGCATAACCAGTAAA+AGG | + | chr2_2:63309815-63309834 | None:intergenic | 30.0% | |
| !! | GTTGCACAAAATTTGTTAGA+TGG | - | chr2_2:63309860-63309879 | Msa0263700:intron | 30.0% |
| AATTGTCTCAAGTATATGCA+AGG | + | chr2_2:63310333-63310352 | None:intergenic | 30.0% | |
| TCTATACTGAAAATCCAAGA+TGG | - | chr2_2:63310754-63310773 | Msa0263700:intron | 30.0% | |
| GTTATCAGCATCACTTTAAT+AGG | - | chr2_2:63310821-63310840 | Msa0263700:intron | 30.0% | |
| GGTTAATTGTCTTCAAAGAT+TGG | - | chr2_2:63310977-63310996 | Msa0263700:intron | 30.0% | |
| TTAACCTATTACACATATCC+CGG | + | chr2_2:63311019-63311038 | None:intergenic | 30.0% | |
| ! | TAGTTTAGTACTATTGGTTG+TGG | + | chr2_2:63311242-63311261 | None:intergenic | 30.0% |
| ! | GTCAACTAGTTTAGTACTAT+TGG | + | chr2_2:63311248-63311267 | None:intergenic | 30.0% |
| ACTAGTTGACACTAATAATG+TGG | - | chr2_2:63311258-63311277 | Msa0263700:intron | 30.0% | |
| !! | TTTCAGGTCTATTCTTTTGT+AGG | + | chr2_2:63311309-63311328 | None:intergenic | 30.0% |
| ACAAAAGAATAGACCTGAAA+AGG | - | chr2_2:63311309-63311328 | Msa0263700:intron | 30.0% | |
| GCCAACTTAAGTAAATTCAA+AGG | + | chr2_2:63311643-63311662 | None:intergenic | 30.0% | |
| !!! | GGCTTTTTGATTTGTTTGAT+TGG | - | chr2_2:63311660-63311679 | Msa0263700:CDS | 30.0% |
| ! | TCTTAAGTTGTCCATAACAA+TGG | - | chr2_2:63311718-63311737 | Msa0263700:CDS | 30.0% |
| !!! | CCAACAGTGGAAATTTTTTA+GGG | + | chr2_2:63311766-63311785 | None:intergenic | 30.0% |
| AAACTATATCCGATTAATGC+AGG | - | chr2_2:63311982-63312001 | Msa0263700:CDS | 30.0% | |
| GATTAATGCAGGTATCAAAT+TGG | - | chr2_2:63311993-63312012 | Msa0263700:CDS | 30.0% | |
| CAAATTCAATGTATGGAACT+TGG | - | chr2_2:63312208-63312227 | Msa0263700:CDS | 30.0% | |
| ! | TAGAGAGAAGAGGTATAAAT+TGG | - | chr2_2:63312288-63312307 | Msa0263700:CDS | 30.0% |
| ! | AAGAGGTATAAATTGGAATG+TGG | - | chr2_2:63312295-63312314 | Msa0263700:CDS | 30.0% |
| ! | TTTTTGCCATATAGACATAG+TGG | - | chr2_2:63312352-63312371 | Msa0263700:CDS | 30.0% |
| TGACTTTGTAGGATGATTAT+TGG | - | chr2_2:63312464-63312483 | Msa0263700:CDS | 30.0% | |
| ! | TACTGCTACTTCAAATCCTT+TGG | - | chr2_2:63309184-63309203 | Msa0263700:three_prime_UTR | 35.0% |
| CCTAATTCTTGATACTCCAA+AGG | + | chr2_2:63309203-63309222 | None:intergenic | 35.0% | |
| !! | CCTTTGGAGTATCAAGAATT+AGG | - | chr2_2:63309200-63309219 | Msa0263700:exon | 35.0% |
| TGTTGCATCATTAACCTACT+TGG | + | chr2_2:63309239-63309258 | None:intergenic | 35.0% | |
| !! | AAATCACTCAGTTCTGAATG+AGG | + | chr2_2:63309290-63309309 | None:intergenic | 35.0% |
| ! | CATTCAGAACTGAGTGATTT+TGG | - | chr2_2:63309290-63309309 | Msa0263700:CDS | 35.0% |
| !! | TATTGATCAGTGAGTTGATG+TGG | + | chr2_2:63309341-63309360 | None:intergenic | 35.0% |
| ! | TATGGTGCTGAAAAGCAATT+AGG | - | chr2_2:63309401-63309420 | Msa0263700:CDS | 35.0% |
| TCAAGTCTATCACTTCCAAT+AGG | - | chr2_2:63309465-63309484 | Msa0263700:CDS | 35.0% | |
| ! | CAATCTCTAGAAATGATGGA+AGG | + | chr2_2:63309698-63309717 | None:intergenic | 35.0% |
| ! | TCCATCATTTCTAGAGATTG+TGG | - | chr2_2:63309698-63309717 | Msa0263700:intron | 35.0% |
| ! | TCCACAATCTCTAGAAATGA+TGG | + | chr2_2:63309702-63309721 | None:intergenic | 35.0% |
| AAAATCATCACACCAAGACT+TGG | - | chr2_2:63309721-63309740 | Msa0263700:intron | 35.0% | |
| TTTCCATAACTAGTACTAGC+AGG | + | chr2_2:63309776-63309795 | None:intergenic | 35.0% | |
| ! | TCACATGTTGTCACCAATTT+TGG | + | chr2_2:63309896-63309915 | None:intergenic | 35.0% |
| !! | ATGTGATGTTTCTGAAACTG+AGG | - | chr2_2:63309910-63309929 | Msa0263700:intron | 35.0% |
| AAACTGAGGTTGCTTCTAAA+GGG | - | chr2_2:63309924-63309943 | Msa0263700:intron | 35.0% | |
| !! | AATGTTTCCTAGTGCTGATT+GGG | - | chr2_2:63309970-63309989 | Msa0263700:intron | 35.0% |
| ! | GCTTTATTCTGCTGATAATC+TGG | + | chr2_2:63310028-63310047 | None:intergenic | 35.0% |
| CACAACAGCATAAAGTCATT+TGG | + | chr2_2:63310195-63310214 | None:intergenic | 35.0% | |
| AATGACTTTATGCTGTTGTG+TGG | - | chr2_2:63310195-63310214 | Msa0263700:CDS | 35.0% | |
| GAAAATGTATGTCACCTAGA+TGG | + | chr2_2:63310453-63310472 | None:intergenic | 35.0% | |
| ! | CTGTTTTCGTCAACAGTTTA+AGG | - | chr2_2:63310652-63310671 | Msa0263700:intron | 35.0% |
| ! | TTTGATAACACCACAGCAAT+TGG | - | chr2_2:63310730-63310749 | Msa0263700:intron | 35.0% |
| ! | TTGATAACACCACAGCAATT+GGG | - | chr2_2:63310731-63310750 | Msa0263700:intron | 35.0% |
| AAACCATTTGCATCTGTTGA+TGG | + | chr2_2:63311060-63311079 | None:intergenic | 35.0% | |
| ! | GTATTGACAAATCATTTCGC+AGG | + | chr2_2:63311216-63311235 | None:intergenic | 35.0% |
| ! | TTAGTACTATTGGTTGTGGT+CGG | + | chr2_2:63311238-63311257 | None:intergenic | 35.0% |
| AGTAGCCAACACATGTTTAT+CGG | + | chr2_2:63311583-63311602 | None:intergenic | 35.0% | |
| CCCTAAAAAATTTCCACTGT+TGG | - | chr2_2:63311763-63311782 | Msa0263700:CDS | 35.0% | |
| !!! | GCCAACAGTGGAAATTTTTT+AGG | + | chr2_2:63311767-63311786 | None:intergenic | 35.0% |
| ATGTGTACTTCTTCAACCAT+AGG | + | chr2_2:63312049-63312068 | None:intergenic | 35.0% | |
| ATGCTTGACAAAAAAACAGC+AGG | - | chr2_2:63312067-63312086 | Msa0263700:CDS | 35.0% | |
| ATTTGGACTGCAATTCTCAT+TGG | + | chr2_2:63312095-63312114 | None:intergenic | 35.0% | |
| AGTCCAAATGAGAGAACTTA+TGG | - | chr2_2:63312106-63312125 | Msa0263700:CDS | 35.0% | |
| TTCAATGCCTTATCCATTCT+AGG | + | chr2_2:63312157-63312176 | None:intergenic | 35.0% | |
| GTAAATGAGTTAAATGAGGC+AGG | - | chr2_2:63312256-63312275 | Msa0263700:CDS | 35.0% | |
| ATGTGGAATGAGTTCAAGAA+TGG | - | chr2_2:63312312-63312331 | Msa0263700:CDS | 35.0% | |
| AAGAATGGATGGAACACTTA+TGG | - | chr2_2:63312327-63312346 | Msa0263700:CDS | 35.0% | |
| TCATGTCCACTATGTCTATA+TGG | + | chr2_2:63312361-63312380 | None:intergenic | 35.0% | |
| TTGACATTAGAACTTAGGCA+TGG | - | chr2_2:63312414-63312433 | Msa0263700:CDS | 35.0% | |
| CTTAGACATCTTGACTTTGT+AGG | - | chr2_2:63312453-63312472 | Msa0263700:CDS | 35.0% | |
| AGAGTCAAGAACACATTACA+AGG | + | chr2_2:63312496-63312515 | None:intergenic | 35.0% | |
| TGTAATGTGTTCTTGACTCT+TGG | - | chr2_2:63312496-63312515 | Msa0263700:CDS | 35.0% | |
| GTAATGTGTTCTTGACTCTT+GGG | - | chr2_2:63312497-63312516 | Msa0263700:CDS | 35.0% | |
| CATTTCTGACTCTGACCTAT+TGG | + | chr2_2:63309483-63309502 | None:intergenic | 40.0% | |
| CAATAGGTCAGAGTCAGAAA+TGG | - | chr2_2:63309481-63309500 | Msa0263700:CDS | 40.0% | |
| TTATTCCAACCACCAAGTCT+TGG | + | chr2_2:63309736-63309755 | None:intergenic | 40.0% | |
| CTAGCAGGACTCTTTGAATT+AGG | + | chr2_2:63309761-63309780 | None:intergenic | 40.0% | |
| AGTCCTGCTAGTACTAGTTA+TGG | - | chr2_2:63309770-63309789 | Msa0263700:intron | 40.0% | |
| ! | TGGGTTTTGCTCTCCAAAAT+TGG | - | chr2_2:63309880-63309899 | Msa0263700:intron | 40.0% |
| GAAACTGAGGTTGCTTCTAA+AGG | - | chr2_2:63309923-63309942 | Msa0263700:intron | 40.0% | |
| !! | CAATGTTTCCTAGTGCTGAT+TGG | - | chr2_2:63309969-63309988 | Msa0263700:intron | 40.0% |
| !! | ATGTTTCCTAGTGCTGATTG+GGG | - | chr2_2:63309971-63309990 | Msa0263700:intron | 40.0% |
| GTAGCTTAGGTGTTTCTTTG+CGG | - | chr2_2:63310002-63310021 | Msa0263700:CDS | 40.0% | |
| GCTTATGTTCATGCAAGAAG+AGG | - | chr2_2:63310051-63310070 | Msa0263700:intron | 40.0% | |
| AACCCCTTGAAGCCTATAAA+TGG | - | chr2_2:63310403-63310422 | Msa0263700:CDS | 40.0% | |
| ACCCCTTGAAGCCTATAAAT+GGG | - | chr2_2:63310404-63310423 | Msa0263700:CDS | 40.0% | |
| ACAACCTTTCCCCCATTTAT+AGG | + | chr2_2:63310418-63310437 | None:intergenic | 40.0% | |
| ! | GGGAAAGGTTGTCATTTGAA+AGG | - | chr2_2:63310426-63310445 | Msa0263700:CDS | 40.0% |
| GTCATTTGAAAGGTCCATCT+AGG | - | chr2_2:63310436-63310455 | Msa0263700:CDS | 40.0% | |
| CAGACTTCACCATGAATTAC+TGG | + | chr2_2:63310635-63310654 | None:intergenic | 40.0% | |
| AAATTGAGCTAGTCAAAGCC+TGG | + | chr2_2:63310713-63310732 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGACACTGTTTTGC+CGG | - | chr2_2:63310997-63311016 | Msa0263700:intron | 40.0% |
| TTTGCCGGGATATGTGTAAT+AGG | - | chr2_2:63311012-63311031 | Msa0263700:intron | 40.0% | |
| GTACCATCAACAGATGCAAA+TGG | - | chr2_2:63311054-63311073 | Msa0263700:intron | 40.0% | |
| TCATCCTTTGAATCAGTAGC+AGG | - | chr2_2:63311082-63311101 | Msa0263700:intron | 40.0% | |
| !! | AAGACCTGCTACTGATTCAA+AGG | + | chr2_2:63311089-63311108 | None:intergenic | 40.0% |
| TTCAAAGCCAGACTGATGTA+AGG | + | chr2_2:63311124-63311143 | None:intergenic | 40.0% | |
| TTCGCAGGACTTCACTTATA+TGG | + | chr2_2:63311201-63311220 | None:intergenic | 40.0% | |
| ! | AAACCTGATGGAACCTTTTC+AGG | + | chr2_2:63311325-63311344 | None:intergenic | 40.0% |
| TGTGGATCATGAAAACCTGA+TGG | + | chr2_2:63311337-63311356 | None:intergenic | 40.0% | |
| ATCCACAACAACAGCATGTT+TGG | - | chr2_2:63311350-63311369 | Msa0263700:intron | 40.0% | |
| ! | CATGTTTATCGGTGTCTGTA+GGG | + | chr2_2:63311572-63311591 | None:intergenic | 40.0% |
| ! | ACATGTTTATCGGTGTCTGT+AGG | + | chr2_2:63311573-63311592 | None:intergenic | 40.0% |
| AGACACCGATAAACATGTGT+TGG | - | chr2_2:63311575-63311594 | Msa0263700:CDS | 40.0% | |
| TTTATAGATCTGGCCAACAG+TGG | + | chr2_2:63311779-63311798 | None:intergenic | 40.0% | |
| GTGCCATAAGTTCTCTCATT+TGG | + | chr2_2:63312112-63312131 | None:intergenic | 40.0% | |
| ! | AGAACTTATGGCACTGAAGT+GGG | - | chr2_2:63312118-63312137 | Msa0263700:CDS | 40.0% |
| AGTTAAATGAGGCAGGACAA+TGG | - | chr2_2:63312263-63312282 | Msa0263700:CDS | 40.0% | |
| GGAATGAGTTCAAGAATGGA+TGG | - | chr2_2:63312316-63312335 | Msa0263700:CDS | 40.0% | |
| CATGATGTTGTGAGATCACT+TGG | - | chr2_2:63312376-63312395 | Msa0263700:CDS | 40.0% | |
| TGTTGTGAGATCACTTGGAT+TGG | - | chr2_2:63312381-63312400 | Msa0263700:CDS | 40.0% | |
| ATCATCACACCAAGACTTGG+TGG | - | chr2_2:63309724-63309743 | Msa0263700:intron | 45.0% | |
| TATGGAAATCTGGGTCCACT+TGG | - | chr2_2:63309788-63309807 | Msa0263700:intron | 45.0% | |
| TAACCAGTAAAAGGGCCAAG+TGG | + | chr2_2:63309806-63309825 | None:intergenic | 45.0% | |
| !! | TGTTTCCTAGTGCTGATTGG+GGG | - | chr2_2:63309972-63309991 | Msa0263700:intron | 45.0% |
| ! | TCTAGAGACTAGAGAGCATG+AGG | - | chr2_2:63310293-63310312 | Msa0263700:CDS | 45.0% |
| CCCCATTTATAGGCTTCAAG+GGG | + | chr2_2:63310408-63310427 | None:intergenic | 45.0% | |
| CCCCTTGAAGCCTATAAATG+GGG | - | chr2_2:63310405-63310424 | Msa0263700:CDS | 45.0% | |
| CCCCCATTTATAGGCTTCAA+GGG | + | chr2_2:63310409-63310428 | None:intergenic | 45.0% | |
| CCCTTGAAGCCTATAAATGG+GGG | - | chr2_2:63310406-63310425 | Msa0263700:CDS | 45.0% | |
| TCCCCCATTTATAGGCTTCA+AGG | + | chr2_2:63310410-63310429 | None:intergenic | 45.0% | |
| GAAGCCTATAAATGGGGGAA+AGG | - | chr2_2:63310411-63310430 | Msa0263700:CDS | 45.0% | |
| ACCATGAATTACTGGACGAG+GGG | + | chr2_2:63310627-63310646 | None:intergenic | 45.0% | |
| CACCATGAATTACTGGACGA+GGG | + | chr2_2:63310628-63310647 | None:intergenic | 45.0% | |
| TCACCATGAATTACTGGACG+AGG | + | chr2_2:63310629-63310648 | None:intergenic | 45.0% | |
| AATTTGTACCATGGACCTCC+AGG | - | chr2_2:63310692-63310711 | Msa0263700:intron | 45.0% | |
| CAGTATAGACCCAATTGCTG+TGG | + | chr2_2:63310743-63310762 | None:intergenic | 45.0% | |
| TTTGGGCTCGAATTCCATCT+TGG | + | chr2_2:63310771-63310790 | None:intergenic | 45.0% | |
| !! | GGTTTTGACACTGTTTTGCC+GGG | - | chr2_2:63310998-63311017 | Msa0263700:intron | 45.0% |
| AGCTACTCCTTACATCAGTC+TGG | - | chr2_2:63311114-63311133 | Msa0263700:intron | 45.0% | |
| ! | GGCTTTGATCCATGCATCTT+AGG | + | chr2_2:63311288-63311307 | None:intergenic | 45.0% |
| AGACCTGAAAAGGTTCCATC+AGG | - | chr2_2:63311319-63311338 | Msa0263700:intron | 45.0% | |
| CTCCAAACATGCTGTTGTTG+TGG | + | chr2_2:63311355-63311374 | None:intergenic | 45.0% | |
| CACAACAACAGCATGTTTGG+AGG | - | chr2_2:63311353-63311372 | Msa0263700:intron | 45.0% | |
| GAGACAGAGAGACAAACGTA+CGG | + | chr2_2:63311448-63311467 | None:intergenic | 45.0% | |
| !! | CATGTGTTGGCTACTCAAAC+TGG | - | chr2_2:63311588-63311607 | Msa0263700:CDS | 45.0% |
| ! | GAGAACTTATGGCACTGAAG+TGG | - | chr2_2:63312117-63312136 | Msa0263700:CDS | 45.0% |
| ATGCCTTATCCATTCTAGGC+TGG | + | chr2_2:63312153-63312172 | None:intergenic | 45.0% | |
| GACAATGGAGTAGAGAGAAG+AGG | - | chr2_2:63312278-63312297 | Msa0263700:CDS | 45.0% | |
| ! | GAACTTAGGCATGGTGTTGA+AGG | - | chr2_2:63312423-63312442 | Msa0263700:CDS | 45.0% |
| !!! | AGTTTAATTATTATATTTTT+TGG | - | chr2_2:63311525-63311544 | Msa0263700:intron | 5.0% |
| GTGCAGCTTCAGAACCAAGT+AGG | - | chr2_2:63309222-63309241 | Msa0263700:CDS | 50.0% | |
| !! | TCAGTGAGTTGATGTGGAGC+AGG | + | chr2_2:63309335-63309354 | None:intergenic | 50.0% |
| !! | TCACACCAAGACTTGGTGGT+TGG | - | chr2_2:63309728-63309747 | Msa0263700:intron | 50.0% |
| TGGGGGAACAGAAGTAGCTT+AGG | - | chr2_2:63309989-63310008 | Msa0263700:intron | 50.0% | |
| ! | GCTGTTGTGTGGACTGCAAA+AGG | - | chr2_2:63310206-63310225 | Msa0263700:CDS | 50.0% |
| TCCCCTCGTCCAGTAATTCA+TGG | - | chr2_2:63310623-63310642 | Msa0263700:intron | 50.0% | |
| TTGAGCTAGTCAAAGCCTGG+AGG | + | chr2_2:63310710-63310729 | None:intergenic | 50.0% | |
| TGTGGCAAGCCTAAGATGCA+TGG | - | chr2_2:63311276-63311295 | Msa0263700:intron | 50.0% | |
| ! | CAGTGGCGATTCTAAGAGCT+TGG | - | chr2_2:63311401-63311420 | Msa0263700:intron | 50.0% |
| !! | AACTGGTCTTTCGCGAAACC+AGG | - | chr2_2:63311605-63311624 | Msa0263700:CDS | 50.0% |
| CAAAGGAGTAGGAACCTACC+TGG | + | chr2_2:63311626-63311645 | None:intergenic | 50.0% | |
| TTAATGCTCGAGTTCGCGTG+TGG | - | chr2_2:63312020-63312039 | Msa0263700:CDS | 50.0% | |
| CAGCCAGCCTAGAATGGATA+AGG | - | chr2_2:63312147-63312166 | Msa0263700:CDS | 50.0% | |
| ! | GGTCCACTTGGCCCTTTTAC+TGG | - | chr2_2:63309800-63309819 | Msa0263700:intron | 55.0% |
| CTGTTCCCCCAATCAGCACT+AGG | + | chr2_2:63309980-63309999 | None:intergenic | 55.0% | |
| AGTCAAAGCCTGGAGGTCCA+TGG | + | chr2_2:63310703-63310722 | None:intergenic | 55.0% | |
| CATGTTTGGAGGCCTCAGAG+AGG | - | chr2_2:63311364-63311383 | Msa0263700:intron | 55.0% | |
| !! | CGTTCTGGAAAGCCTCTCTG+AGG | + | chr2_2:63311379-63311398 | None:intergenic | 55.0% |
| AGGCTTTCCAGAACGTGCAG+TGG | - | chr2_2:63311384-63311403 | Msa0263700:intron | 55.0% | |
| AGAATCGCCACTGCACGTTC+TGG | + | chr2_2:63311394-63311413 | None:intergenic | 55.0% | |
| GGTCTTTCGCGAAACCAGGT+AGG | - | chr2_2:63311609-63311628 | Msa0263700:CDS | 55.0% | |
| AGTTCGCGTGTGGAAGCCTA+TGG | - | chr2_2:63312030-63312049 | Msa0263700:CDS | 55.0% | |
| CTCATGCAGCCAGCCTAGAA+TGG | - | chr2_2:63312141-63312160 | Msa0263700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 63309089 | 63312532 | 63309089 | ID=Msa0263700;Name=Msa0263700 |
| chr2_2 | mRNA | 63309089 | 63312532 | 63309089 | ID=Msa0263700-mRNA-1;Parent=Msa0263700;Name=Msa0263700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.5|1|1|1|4|115|623 |
| chr2_2 | exon | 63309089 | 63309617 | 63309089 | ID=Msa0263700-mRNA-1:exon:19667;Parent=Msa0263700-mRNA-1 |
| chr2_2 | exon | 63309995 | 63310055 | 63309995 | ID=Msa0263700-mRNA-1:exon:19666;Parent=Msa0263700-mRNA-1 |
| chr2_2 | exon | 63310175 | 63310587 | 63310175 | ID=Msa0263700-mRNA-1:exon:19665;Parent=Msa0263700-mRNA-1 |
| chr2_2 | exon | 63311549 | 63312532 | 63311549 | ID=Msa0263700-mRNA-1:exon:19664;Parent=Msa0263700-mRNA-1 |
| chr2_2 | CDS | 63311549 | 63312532 | 63311549 | ID=Msa0263700-mRNA-1:cds;Parent=Msa0263700-mRNA-1 |
| chr2_2 | CDS | 63310175 | 63310587 | 63310175 | ID=Msa0263700-mRNA-1:cds;Parent=Msa0263700-mRNA-1 |
| chr2_2 | CDS | 63309995 | 63310055 | 63309995 | ID=Msa0263700-mRNA-1:cds;Parent=Msa0263700-mRNA-1 |
| chr2_2 | CDS | 63309204 | 63309617 | 63309204 | ID=Msa0263700-mRNA-1:cds;Parent=Msa0263700-mRNA-1 |
| chr2_2 | three_prime_UTR | 63309089 | 63309203 | 63309089 | ID=Msa0263700-mRNA-1:three_prime_utr;Parent=Msa0263700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
