AlfalfaGEDB | Msa0264470

M. sativa cultivar zhongmu-4 / Msa0264470

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009410 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264470	XP_003597371.3	72.954	281	57	4	1	274	1	269	6.58e-110	363
Msa0264470	XP_003597371.3	94.582	646	32	1	274	919	1	643	0.0	1240

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264470	sp\|P0C883\|SCL33_ARATH	40.958	647	329	13	319	918	53	693	6.47e-160	488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264470	A0A396JHA8	72.954	281	57	4	1	274	1	269	3.14e-110	363
Msa0264470	A0A396JHA8	94.582	646	32	1	274	919	1	643	0.0	1240

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TFs/TRs:

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Gene ID	Type	Classification
Msa0264470	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264470	MtrunA17_Chr2g0328381	94.582	646	32	1	274	919	1	643	0.0	1240
Msa0264470	MtrunA17_Chr2g0328381	72.954	281	57	4	1	274	1	269	6.05e-114	363
Msa0264470	MtrunA17_Chr2g0328341	83.667	649	94	4	274	919	1	640	0.0	1095
Msa0264470	MtrunA17_Chr2g0328341	84.477	277	29	2	1	274	1	266	3.59e-136	421
Msa0264470	MtrunA17_Chr2g0328361	78.891	649	102	4	274	919	1	617	0.0	988
Msa0264470	MtrunA17_Chr2g0328361	70.609	279	66	5	1	274	1	268	1.50e-103	335
Msa0264470	MtrunA17_Chr2g0328371	86.905	252	33	0	621	872	1	252	3.41e-160	469
Msa0264470	MtrunA17_Chr2g0328391	44.013	618	312	14	324	919	66	671	1.28e-155	473
Msa0264470	MtrunA17_Chr4g0031701	42.468	624	303	16	324	919	33	628	1.26e-152	464
Msa0264470	MtrunA17_Chr4g0031731	41.627	627	304	15	324	919	33	628	4.80e-148	452

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264470	AT2G29060.2	42.055	623	319	11	319	918	53	656	9.26e-164	494
Msa0264470	AT2G29060.1	40.958	647	329	13	319	918	53	693	6.58e-161	488
Msa0264470	AT1G07530.1	51.410	461	204	7	476	919	310	767	8.18e-160	487
Msa0264470	AT1G07520.2	48.098	447	216	8	484	919	90	531	2.86e-139	426
Msa0264470	AT1G07520.4	48.098	447	216	8	484	919	90	531	2.86e-139	426
Msa0264470	AT2G29065.1	41.531	614	325	16	323	919	34	630	1.10e-138	428
Msa0264470	AT1G07520.1	48.098	447	216	8	484	919	254	695	5.63e-138	428
Msa0264470	AT1G07520.3	48.098	447	216	8	484	919	255	696	6.18e-138	428
Msa0264470	AT2G37650.2	48.177	384	191	4	539	918	323	702	1.80e-123	390
Msa0264470	AT2G37650.1	48.177	384	191	4	539	918	335	714	2.04e-123	391

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Find 156 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGATTAGGAGGGGA+TGG	0.534633	2_2:-64415825	None:intergenic
AAAATTGGATGCTACAAGGT+TGG	0.509330	2_2:+64419535	Msa0264470:CDS
AAACTATAATCACTGAAGCT+AGG	0.467624	2_2:-64415711	None:intergenic
AAACTATAATCACTGAAGTT+AGG	0.291953	2_2:-64418055	None:intergenic
AAAGAGCATTATTGAAAGAA+GGG	0.443472	2_2:-64415872	None:intergenic
AAAGAGCATTATTGAAAGAA+GGG	0.443472	2_2:-64418216	None:intergenic
AAATCCAAAACAGCACCTCT+CGG	0.585044	2_2:-64419132	None:intergenic
AACCCTATCACAGCCTTCAC+AGG	0.513850	2_2:-64419364	None:intergenic
AACTATAATCACTGAAGCTA+GGG	0.515859	2_2:-64415710	None:intergenic
AACTATAATCACTGAAGTTA+GGG	0.442010	2_2:-64418054	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAGTCTTACTTTGTTCA+TGG	-	chr2_2:64415326-64415345	None:intergenic	30.0%
AATCTTCTTCCATGAGAAAT+TGG	-	chr2_2:64415473-64415492	None:intergenic	30.0%
AACTATAATCACTGAAGCTA+GGG	-	chr2_2:64415713-64415732	None:intergenic	30.0%
AAACTATAATCACTGAAGCT+AGG	-	chr2_2:64415714-64415733	None:intergenic	30.0%
AGAAAAAATGTGATTAGGAG+GGG	-	chr2_2:64415832-64415851	None:intergenic	30.0%
GAGAAAAAATGTGATTAGGA+GGG	-	chr2_2:64415833-64415852	None:intergenic	30.0%
TGAGAAAAAATGTGATTAGG+AGG	-	chr2_2:64415834-64415853	None:intergenic	30.0%
CATTATTGAAAGAAGGGAAA+AGG	-	chr2_2:64415869-64415888	None:intergenic	30.0%
AAGACCTAATTGAGTATTCA+AGG	-	chr2_2:64416344-64416363	None:intergenic	30.0%
CCATATTGCTTCAGTATAAA+AGG	-	chr2_2:64416375-64416394	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	64415297	64419602	64415297	ID=Msa0264470;Name=Msa0264470
chr2_2	mRNA	64415297	64419602	64415297	ID=Msa0264470-mRNA-1;Parent=Msa0264470;Name=Msa0264470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|919
chr2_2	exon	64415297	64416115	64415297	ID=Msa0264470-mRNA-1:exon:20084;Parent=Msa0264470-mRNA-1
chr2_2	exon	64417662	64419602	64417662	ID=Msa0264470-mRNA-1:exon:20085;Parent=Msa0264470-mRNA-1
chr2_2	CDS	64415297	64416115	64415297	ID=Msa0264470-mRNA-1:cds;Parent=Msa0264470-mRNA-1
chr2_2	CDS	64417662	64419602	64417662	ID=Msa0264470-mRNA-1:cds;Parent=Msa0264470-mRNA-1

Gene Sequence

>Msa0264470

ATGGACAAAAGAGTTGTTGGTCCACACCATGAACAAAGTAAGACTGAATTCTCTTCAACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAAGAAGACTACAATATGTTCCAACACAATGAGCATGAAGAGTCATCCAATGCTCTTGGTTATATCAACCAATTTCTCATGGAAGAAGATTTTGAAAAAGAATACACTATGTTCCAAGATTCCTATGCTCTTCAACTTACTGAGAAATCATTCCATGATGTTATTTCTCACCCTCCTCCTACTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCTACTCTTCCCTCTTCTTCCTCTTCTTCGTCTTCTTATTCTTCTTCTTCTTCCATCCAGCATCAGCAAAACTACAACTATGTGCATAGCCCTAGCTTCAGTGATTATAGTTTCAGCAGTGGTAGCACTAGCTCCTATGAACTTGATCCAATTATAGACTCATACAACTATAATAACAACCCTTTTCTACTCCCAACTACTCTTCCATCCCCTCCTAATCACATTTTTTCTCAATCCAATCCAACCCTTTTCCCTTCTTTCAATAATGCTCTTTCTCACGAGGTAATTAAGACAGAAAACTTTGAAGAAGAGCATTTTCTTAATGTGTCAAAACAAGTGAATGTAGATGATAACAGTGAGTTATCAGAATTATTTGATAAATTACTTCTTGGTACTAAAGTCGCAAAAGGTCCACTTCAAAACACAAGCTTTCAGCAGAATGAAGAATTATCAAACAGATTCGGTGGTTTTAGGAGAAAGAGAAGTTATGAGGAAATGGACAAAGGAGTTGTTGATCCACTCCATGAACAAAGTAAGAGTGAATTCACTTCCACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAAGAAGACTACAATATGTTCCAACACAATGATCATGAAGAGTCTTCCAATGCTCTTGGTTATATCAACCAATTTCTCATGGAAGAAGATTTTGAAAAAGAATACACTATGTTCCAAGATTCCTATGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTGCTCACACTCCTCTTCCTCCTCTTCCTCCTACTGCTGCTGCTGCTGCTGTTACTGCTTTTACTACTACTCTTCCTTCTTCCATCCAGCATGAGTATCAACAAAACTACAACTTTGTGCATAGCCCTAACTTCAGTGATTATAGTTTAAGCAGTGATAGCACTACCTCCTTTGAACTTGATCCACATATAGACTCATACAACTACAATTATAACCCTTTTCTACTCCCAAATACTCCTCCATTTTCTCCTAATAACTTTGTTTCCCAATCTACTTCAACCTTTTTCCCTTCTTTCAATAATGCTCTTTCTCATGAGCTACTTCAGACAGAAAACTTTGAAGAAGAGCATTTTCTCAATGTGTCACAAAATGGATCAGAACAAGTGTATGTAGATGATAGCAATGAGTTATCAGAATTATTTGATAAAGTACTAGTTCTTGGTACTAAATTCACAAAAGGGCCACTTCAAAACACAAGCTTCCAGCAGAATGAAGAATTATCAAACAGATTCTATGGTTCTAGGAGACAAAGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTGTGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAAATATTAAACCAGATTAAGACACATTCTTCTCCAACAGGTGATGGAACTCAAAGATTGGCACATTTCTTTGGAAATGCACTTGAAGCACGTTTAGCAGGAACTGGTTCACATATCTATAGAGCTCTATCTTCCAAGAAAAAATCTGCCGCAGATATGGTCAAAGCTTACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAACTTGCAATTATGTTCTCAAACGATGCAATTTTGAATGTAGCCAAAGAAACAGAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCTTGGTTTTATATATCGTTTATCGAAAAGATCTGGTGGGCCACCCAAGTTGAGGATCACAGGGATAGATCTTCCAAATTCATTGGAGAGAGTGAATGAAACAGGTCTTAGGCTTGCAAGTTATTGCAAACGTTTCAATGTTCCTTTTGAGTACAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTCAGGATTTTAAGATAAGGAAAAATGAGTTTGTTGCTGTGACTTGTGTGTTTAAGTTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGAGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTATTCATAGCATTGTTAATGGTGGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTTATTATTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAATGTGAGGATCCTGTTAGGTTGATGTTTGAGGAAGACGTTTGGGGGAAAGATATAATGAATGTTATAGCCTGTGAAGGCTGTGATAGGGTTCAGAGGCCAGAGACATATATGCATTGGCATTCTAGGCACATGGGAAATGGGTTTAGATCTTTGAAACTGGATAAGCAGATTATAAATAAATTGAAGGGTAAGTTAAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAAGGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAATTCTATTTGGTTCTTCTTGCTGGGTTCCAGCATAG

Protein sequence

>Msa0264470

MDKRVVGPHHEQSKTEFSSTVLGFINKFLMEDDDIEEDYNMFQHNEHEESSNALGYINQFLMEEDFEKEYTMFQDSYALQLTEKSFHDVISHPPPTAATAAAAAAAAAATLPSSSSSSSSYSSSSSIQHQQNYNYVHSPSFSDYSFSSGSTSSYELDPIIDSYNYNNNPFLLPTTLPSPPNHIFSQSNPTLFPSFNNALSHEVIKTENFEEEHFLNVSKQVNVDDNSELSELFDKLLLGTKVAKGPLQNTSFQQNEELSNRFGGFRRKRSYEEMDKGVVDPLHEQSKSEFTSTVLGFINKFLMEDDDIEEDYNMFQHNDHEESSNALGYINQFLMEEDFEKEYTMFQDSYALQLTEKSFHDVIAHTPLPPLPPTAAAAAVTAFTTTLPSSIQHEYQQNYNFVHSPNFSDYSLSSDSTTSFELDPHIDSYNYNYNPFLLPNTPPFSPNNFVSQSTSTFFPSFNNALSHELLQTENFEEEHFLNVSQNGSEQVYVDDSNELSELFDKVLVLGTKFTKGPLQNTSFQQNEELSNRFYGSRRQRSYEEVVDLRTLLMLCAQSISCNDISNANQILNQIKTHSSPTGDGTQRLAHFFGNALEARLAGTGSHIYRALSSKKKSAADMVKAYQVYSSACPFEKLAIMFSNDAILNVAKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPNSLERVNETGLRLASYCKRFNVPFEYNGIAKNWESIKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLDNNNVECEDPVRLMFEEDVWGKDIMNVIACEGCDRVQRPETYMHWHSRHMGNGFRSLKLDKQIINKLKGKLRDDAYNSDFLFEVKENWMLQGWKGRILFGSSCWVPA*