Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264990 | XP_003597529.1 | 98.140 | 430 | 7 | 1 | 1 | 430 | 1 | 429 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264990 | sp|Q04088|POF21_ARATH | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.29e-150 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264990 | G7IHV8 | 98.140 | 430 | 7 | 1 | 1 | 430 | 1 | 429 | 0.0 | 861 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0264990 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264990 | MtrunA17_Chr2g0329551 | 98.140 | 430 | 7 | 1 | 1 | 430 | 1 | 429 | 0.0 | 861 |
| Msa0264990 | MtrunA17_Chr3g0107491 | 52.874 | 261 | 93 | 7 | 72 | 322 | 38 | 278 | 4.65e-66 | 216 |
| Msa0264990 | MtrunA17_Chr5g0432701 | 52.549 | 255 | 68 | 9 | 72 | 320 | 51 | 258 | 9.00e-65 | 211 |
| Msa0264990 | MtrunA17_Chr3g0128781 | 43.796 | 274 | 80 | 8 | 72 | 335 | 7 | 216 | 5.57e-51 | 174 |
| Msa0264990 | MtrunA17_Chr6g0463571 | 42.532 | 308 | 122 | 12 | 66 | 366 | 22 | 281 | 8.62e-48 | 166 |
| Msa0264990 | MtrunA17_Chr4g0036071 | 40.328 | 305 | 104 | 10 | 109 | 364 | 213 | 488 | 3.98e-44 | 160 |
| Msa0264990 | MtrunA17_Chr1g0156051 | 59.712 | 139 | 53 | 2 | 176 | 313 | 343 | 479 | 2.47e-32 | 129 |
| Msa0264990 | MtrunA17_Chr2g0316551 | 37.821 | 156 | 82 | 2 | 219 | 374 | 206 | 346 | 2.01e-20 | 92.0 |
| Msa0264990 | MtrunA17_Chr2g0325131 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.40e-19 | 89.4 |
| Msa0264990 | MtrunA17_Chr4g0040891 | 46.000 | 100 | 54 | 0 | 219 | 318 | 192 | 291 | 7.93e-19 | 87.0 |
| Msa0264990 | MtrunA17_Chr1g0202051 | 36.697 | 109 | 69 | 0 | 206 | 314 | 109 | 217 | 2.57e-13 | 70.1 |
| Msa0264990 | MtrunA17_Chr2g0306581 | 63.265 | 49 | 18 | 0 | 209 | 257 | 1 | 49 | 3.13e-12 | 63.5 |
| Msa0264990 | MtrunA17_Chr8g0380611 | 27.341 | 267 | 158 | 6 | 58 | 313 | 80 | 321 | 3.37e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264990 | AT1G06070.1 | 73.810 | 336 | 69 | 6 | 19 | 352 | 21 | 339 | 4.27e-168 | 478 |
| Msa0264990 | AT2G31370.5 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.33e-151 | 435 |
| Msa0264990 | AT2G31370.2 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0264990 | AT2G31370.4 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0264990 | AT2G31370.1 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0264990 | AT2G31370.7 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0264990 | AT2G31370.3 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0264990 | AT2G31370.6 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0264990 | AT2G40620.1 | 49.231 | 260 | 95 | 7 | 66 | 324 | 28 | 251 | 2.28e-61 | 203 |
| Msa0264990 | AT1G43700.1 | 49.746 | 197 | 90 | 3 | 161 | 348 | 129 | 325 | 2.58e-49 | 171 |
| Msa0264990 | AT1G06850.1 | 52.459 | 183 | 61 | 2 | 204 | 360 | 131 | 313 | 3.77e-48 | 168 |
| Msa0264990 | AT4G38900.2 | 42.642 | 265 | 98 | 6 | 109 | 319 | 228 | 492 | 8.08e-46 | 166 |
| Msa0264990 | AT4G38900.3 | 42.642 | 265 | 98 | 6 | 109 | 319 | 228 | 492 | 8.08e-46 | 166 |
| Msa0264990 | AT4G38900.1 | 41.697 | 271 | 98 | 7 | 109 | 319 | 228 | 498 | 2.51e-43 | 160 |
| Msa0264990 | AT2G21230.4 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.36e-42 | 157 |
| Msa0264990 | AT2G21230.1 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.36e-42 | 157 |
| Msa0264990 | AT2G21230.3 | 59.690 | 129 | 46 | 1 | 196 | 318 | 345 | 473 | 1.20e-39 | 149 |
| Msa0264990 | AT2G21230.2 | 65.421 | 107 | 37 | 0 | 196 | 302 | 345 | 451 | 6.08e-37 | 140 |
| Msa0264990 | AT1G06850.2 | 76.712 | 73 | 17 | 0 | 204 | 276 | 131 | 203 | 8.06e-27 | 107 |
| Msa0264990 | AT2G42380.2 | 47.000 | 100 | 53 | 0 | 219 | 318 | 184 | 283 | 5.77e-20 | 90.5 |
| Msa0264990 | AT3G58120.1 | 47.959 | 98 | 51 | 0 | 221 | 318 | 202 | 299 | 9.37e-20 | 90.1 |
| Msa0264990 | AT2G12900.1 | 34.109 | 129 | 77 | 1 | 196 | 316 | 83 | 211 | 1.30e-18 | 85.9 |
| Msa0264990 | AT2G42380.5 | 47.619 | 84 | 44 | 0 | 219 | 302 | 184 | 267 | 3.30e-17 | 81.6 |
| Msa0264990 | AT3G58120.2 | 49.367 | 79 | 40 | 0 | 221 | 299 | 202 | 280 | 4.84e-16 | 78.6 |
| Msa0264990 | AT2G13150.1 | 37.615 | 109 | 67 | 1 | 207 | 315 | 136 | 243 | 6.08e-16 | 77.8 |
| Msa0264990 | AT2G12940.1 | 34.188 | 117 | 76 | 1 | 197 | 313 | 125 | 240 | 2.94e-15 | 76.6 |
| Msa0264990 | AT2G42380.1 | 42.000 | 100 | 47 | 1 | 219 | 318 | 184 | 272 | 1.20e-13 | 72.0 |
| Msa0264990 | AT2G21235.1 | 43.678 | 87 | 49 | 0 | 221 | 307 | 359 | 445 | 3.32e-13 | 72.0 |
| Msa0264990 | AT1G58110.1 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.14e-11 | 66.6 |
| Msa0264990 | AT1G58110.2 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.14e-11 | 66.6 |
| Msa0264990 | AT2G42380.3 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.22e-11 | 62.4 |
| Msa0264990 | AT2G42380.4 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.22e-11 | 62.4 |
Find 147 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTGCTGGTGTCTGATTC+TGG | 0.098268 | 2_2:+65155117 | None:intergenic |
| TCCCCTTTCTCTCTATTTCT+AGG | 0.178092 | 2_2:-65155961 | Msa0264990:five_prime_UTR |
| CCTATGAACTTTAATTCTTT+TGG | 0.197858 | 2_2:-65152772 | Msa0264990:CDS |
| GTGATTGCTTAGTGTTGTTT+AGG | 0.228415 | 2_2:-65155669 | Msa0264990:five_prime_UTR |
| TTCTTGGCACCTCAGTTAAT+TGG | 0.229412 | 2_2:-65152292 | Msa0264990:three_prime_UTR |
| TGAAGTGATTGAACTGGATT+AGG | 0.244656 | 2_2:-65155696 | Msa0264990:five_prime_UTR |
| ATCTGATGAAGGATTATCTT+TGG | 0.251730 | 2_2:+65152507 | None:intergenic |
| CCATGCCATGCACACTCTTT+TGG | 0.268695 | 2_2:-65152719 | Msa0264990:CDS |
| GTGCATGGCATGGTTATTAT+TGG | 0.277488 | 2_2:+65152729 | None:intergenic |
| TGTATAATACTAAAATTTCT+TGG | 0.284037 | 2_2:-65152308 | Msa0264990:three_prime_UTR |
| CTAGAATCTGAGCTGGTTCC+AGG | 0.284646 | 2_2:+65155496 | None:intergenic |
| TTCCGAGATTCTTACCTTGC+CGG | 0.302193 | 2_2:-65155404 | Msa0264990:CDS |
| ACCTTTGCGCCGCGTAGATC+AGG | 0.306683 | 2_2:+65155909 | None:intergenic |
| ACCTCCATCAGGACGTTATC+CGG | 0.323576 | 2_2:-65155590 | Msa0264990:CDS |
| TGATTGCTTAGTGTTGTTTA+GGG | 0.334346 | 2_2:-65155668 | Msa0264990:five_prime_UTR |
| TCTGATGAAGGATTATCTTT+GGG | 0.340833 | 2_2:+65152508 | None:intergenic |
| CTGTGCTGGTGTCTGATTCT+GGG | 0.348924 | 2_2:+65155118 | None:intergenic |
| GAAGTGATTGAACTGGATTA+GGG | 0.360372 | 2_2:-65155695 | Msa0264990:five_prime_UTR |
| TGCGCAGTTAACTCTCTTAC+AGG | 0.360430 | 2_2:-65153492 | Msa0264990:intron |
| ATGTCGGTAGGGCAGACATC+AGG | 0.368301 | 2_2:-65155193 | Msa0264990:CDS |
| TTTGTTGCTGCTGTATTTGT+TGG | 0.370991 | 2_2:+65152617 | None:intergenic |
| CCCCTTTCTCTCTATTTCTA+GGG | 0.376649 | 2_2:-65155960 | Msa0264990:five_prime_UTR |
| GTTGTCCATGTACCTTGATA+TGG | 0.382193 | 2_2:-65155299 | Msa0264990:CDS |
| CGCAGTTTCTCAACAATCCT+TGG | 0.383849 | 2_2:+65152468 | None:intergenic |
| TCGTATCCGCCGCTTGCTCC+TGG | 0.385842 | 2_2:-65155514 | Msa0264990:CDS |
| AAACAATAGTACCAACTGTA+TGG | 0.395953 | 2_2:-65156092 | None:intergenic |
| CGGAATGAAGAGAGAGAAAG+TGG | 0.396602 | 2_2:+65155993 | None:intergenic |
| TCTAATGCTGCCGGAGCATC+AGG | 0.411149 | 2_2:-65155226 | Msa0264990:CDS |
| TGCTGCCGGAGCATCAGGTT+TGG | 0.412727 | 2_2:-65155221 | Msa0264990:CDS |
| GGAGCAACAAGTTCACTTGC+AGG | 0.420631 | 2_2:-65153287 | Msa0264990:CDS |
| CATCCATGGATTGGCTGTGC+TGG | 0.426609 | 2_2:+65155104 | None:intergenic |
| AATGGAAAAGGACAAATCAT+TGG | 0.426956 | 2_2:-65155632 | Msa0264990:CDS |
| TTGACCCCAAGCGTGCAAAA+AGG | 0.430308 | 2_2:-65154973 | Msa0264990:intron |
| AACCCTAGAAATAGAGAGAA+AGG | 0.437708 | 2_2:+65155958 | None:intergenic |
| TGCACGCTTGGGGTCAATCA+AGG | 0.439782 | 2_2:+65154979 | None:intergenic |
| GAGAAAGGGGAAATGAATAT+CGG | 0.452502 | 2_2:+65155973 | None:intergenic |
| TTTAAATGACGCGTTAAAAG+AGG | 0.453730 | 2_2:-65152848 | Msa0264990:CDS |
| CTTAGTGTTGTTTAGGGTCA+AGG | 0.453918 | 2_2:-65155662 | Msa0264990:five_prime_UTR |
| TATCCGGGTTATTCACCAAC+TGG | 0.455335 | 2_2:-65155574 | Msa0264990:CDS |
| GTAACAGGATATGGGCAAAT+AGG | 0.455791 | 2_2:-65153610 | Msa0264990:intron |
| GCACCTCAGTTAATTGGCTA+TGG | 0.456886 | 2_2:-65152286 | Msa0264990:three_prime_UTR |
| CAAGTGAACTTGTTGCTCCA+TGG | 0.458049 | 2_2:+65153291 | None:intergenic |
| TGCATGGCATGGTTATTATT+GGG | 0.461227 | 2_2:+65152730 | None:intergenic |
| ATTTGTGTGTAACAGGATAT+GGG | 0.465089 | 2_2:-65153618 | Msa0264990:intron |
| GTAGATCAGGGGAGATAGAT+TGG | 0.469223 | 2_2:+65155922 | None:intergenic |
| AAATCATTGGGTCTTGGCGG+TGG | 0.469321 | 2_2:-65155619 | Msa0264990:CDS |
| TGGCGCCAAACCTGATGCTC+CGG | 0.476829 | 2_2:+65155216 | None:intergenic |
| TTCATCAGATGTAAATCCTT+CGG | 0.478143 | 2_2:-65152494 | Msa0264990:CDS |
| GTTTGATTCGGTGACGAGAA+TGG | 0.479400 | 2_2:-65156069 | Msa0264990:five_prime_UTR |
| AAGTTCATAGGTCCTCCATT+TGG | 0.480765 | 2_2:+65152784 | None:intergenic |
| CCAAAAGAATTAAAGTTCAT+AGG | 0.483391 | 2_2:+65152772 | None:intergenic |
| CGTCTATGACCTCTATTTCT+CGG | 0.485976 | 2_2:+65155433 | None:intergenic |
| GGCTATGGATATATCAATGT+AGG | 0.488958 | 2_2:-65152271 | Msa0264990:three_prime_UTR |
| CCTTTGCGCCGCGTAGATCA+GGG | 0.489306 | 2_2:+65155910 | None:intergenic |
| GCGGCGGATACGACGATGAT+GGG | 0.489367 | 2_2:+65155524 | None:intergenic |
| GGTTATTCACCAACTGGAAG+TGG | 0.489501 | 2_2:-65155568 | Msa0264990:CDS |
| ACAACAAATGCAGCAGCAGC+AGG | 0.491300 | 2_2:-65152587 | Msa0264990:CDS |
| GTTTACTTTATTGATTGAGA+TGG | 0.495389 | 2_2:-65152219 | Msa0264990:three_prime_UTR |
| AAGGACAAATCATTGGGTCT+TGG | 0.496632 | 2_2:-65155625 | Msa0264990:CDS |
| CAAGGAATCGTGAATGGAAA+AGG | 0.498524 | 2_2:-65155644 | Msa0264990:exon |
| GGGCAAGCTATGCCGCCAAA+TGG | 0.498892 | 2_2:-65152799 | Msa0264990:CDS |
| ACCCTAGAAATAGAGAGAAA+GGG | 0.501328 | 2_2:+65155959 | None:intergenic |
| GGTGTAGTTGGTGGTGCTGA+TGG | 0.502800 | 2_2:-65155355 | Msa0264990:CDS |
| GACAAATCATTGGGTCTTGG+CGG | 0.504559 | 2_2:-65155622 | Msa0264990:CDS |
| GAAGGATTTACATCTGATGA+AGG | 0.504672 | 2_2:+65152496 | None:intergenic |
| CGCATTTGAAAGTACTGACT+GGG | 0.505823 | 2_2:-65152819 | Msa0264990:CDS |
| ATGGAAAAGGACAAATCATT+GGG | 0.507816 | 2_2:-65155631 | Msa0264990:CDS |
| GATAGTGACCTCGGTGTAGT+TGG | 0.507851 | 2_2:-65155367 | Msa0264990:CDS |
| AGCGGCGGATACGACGATGA+TGG | 0.508995 | 2_2:+65155523 | None:intergenic |
| TTCATAGGTCCTCCATTTGG+CGG | 0.509377 | 2_2:+65152787 | None:intergenic |
| CAACAATCCTTGGCTGCCGA+AGG | 0.516507 | 2_2:+65152478 | None:intergenic |
| CTATCAAAGCTAATATCATC+CGG | 0.517208 | 2_2:+65155385 | None:intergenic |
| GATTGTTGTTGACCCATCCA+TGG | 0.517655 | 2_2:+65155090 | None:intergenic |
| CCAACTGTATGGGTTTGATT+CGG | 0.518451 | 2_2:-65156081 | Msa0264990:five_prime_UTR |
| TGTCGGTAGGGCAGACATCA+GGG | 0.518633 | 2_2:-65155192 | Msa0264990:CDS |
| CTTATCCATATCAAGGTACA+TGG | 0.520173 | 2_2:+65155294 | None:intergenic |
| GCTATATTGCTGAGCTTGAA+AGG | 0.525278 | 2_2:-65153553 | Msa0264990:CDS |
| GATGTCTGCCCTACCGACAT+TGG | 0.526587 | 2_2:+65155196 | None:intergenic |
| CCTCCATCAGGACGTTATCC+GGG | 0.528655 | 2_2:-65155589 | Msa0264990:CDS |
| TTGTTGACCCATCCATGGAT+TGG | 0.532881 | 2_2:+65155095 | None:intergenic |
| CAGCACAGCCAATCCATGGA+TGG | 0.535460 | 2_2:-65155103 | Msa0264990:CDS |
| TAGGGTCAAGGAATCGTGAA+TGG | 0.539205 | 2_2:-65155650 | Msa0264990:exon |
| ATCCGGCAAGGTAAGAATCT+CGG | 0.540794 | 2_2:+65155402 | None:intergenic |
| CTGCGGCAAGGTCAAAAGAA+AGG | 0.542300 | 2_2:-65153583 | Msa0264990:CDS |
| CATGGACAACAAATCTTCCT+CGG | 0.543636 | 2_2:+65155312 | None:intergenic |
| CCCTGATCTACGCGGCGCAA+AGG | 0.544257 | 2_2:-65155910 | Msa0264990:intron |
| GAAGGATTATCTTTGGGGCA+TGG | 0.547961 | 2_2:+65152514 | None:intergenic |
| AATTGAACTTATCCATATCA+AGG | 0.549561 | 2_2:+65155287 | None:intergenic |
| TTGTCTCGGTGTCCTAGTGT+TGG | 0.550015 | 2_2:-65152418 | Msa0264990:three_prime_UTR |
| TGTAAATCCTTCGGCAGCCA+AGG | 0.553319 | 2_2:-65152485 | Msa0264990:CDS |
| CAAACCTGAGATGTTAGTCT+CGG | 0.554735 | 2_2:-65155068 | Msa0264990:CDS |
| ACGCATTTGAAAGTACTGAC+TGG | 0.558522 | 2_2:-65152820 | Msa0264990:CDS |
| TACCTCTTCTGGGGAAAACA+TGG | 0.559014 | 2_2:-65155164 | Msa0264990:CDS |
| CCCTAGAAATAGAGAGAAAG+GGG | 0.561303 | 2_2:+65155960 | None:intergenic |
| ACACCAGCACAGCCAATCCA+TGG | 0.562387 | 2_2:-65155107 | Msa0264990:CDS |
| GGTGAGGGGTCTAATGCTGC+CGG | 0.563134 | 2_2:-65155235 | Msa0264990:CDS |
| GCTATGGATATATCAATGTA+GGG | 0.565991 | 2_2:-65152270 | Msa0264990:three_prime_UTR |
| GAAAGTGCAGACATTGCAAA+CGG | 0.566063 | 2_2:-65153531 | Msa0264990:CDS |
| AACAATAGTACCAACTGTAT+GGG | 0.567890 | 2_2:-65156091 | None:intergenic |
| GGTTTGGCGCCAATGTCGGT+AGG | 0.568378 | 2_2:-65155205 | Msa0264990:CDS |
| GATAATCCTCCGAGAAATAG+AGG | 0.571302 | 2_2:-65155442 | Msa0264990:CDS |
| ATCAGGTTTGGCGCCAATGT+CGG | 0.572303 | 2_2:-65155209 | Msa0264990:CDS |
| TGATGTTGCTGCTGTTTCTG+AGG | 0.574585 | 2_2:+65152664 | None:intergenic |
| CAAGCTATGCCGCCAAATGG+AGG | 0.574883 | 2_2:-65152796 | Msa0264990:CDS |
| CTGATGAAGGATTATCTTTG+GGG | 0.574967 | 2_2:+65152509 | None:intergenic |
| AAACCTGAGATGTTAGTCTC+GGG | 0.579212 | 2_2:-65155067 | Msa0264990:CDS |
| GAACCCGAGACTAACATCTC+AGG | 0.581152 | 2_2:+65155064 | None:intergenic |
| CGGCGGATACGACGATGATG+GGG | 0.587072 | 2_2:+65155525 | None:intergenic |
| TCTGGGGAAAACATGGCAGT+TGG | 0.589649 | 2_2:-65155157 | Msa0264990:CDS |
| AAAGCCACTAGAATCTGAGC+TGG | 0.591242 | 2_2:+65155489 | None:intergenic |
| CTCGGTGTCCTAGTGTTGGT+AGG | 0.592023 | 2_2:-65152414 | Msa0264990:three_prime_UTR |
| CCAAAAGAGTGTGCATGGCA+TGG | 0.592655 | 2_2:+65152719 | None:intergenic |
| CTTCCAGTTGGTGAATAACC+CGG | 0.596092 | 2_2:+65155571 | None:intergenic |
| AGCACAGCCAATCCATGGAT+GGG | 0.597943 | 2_2:-65155102 | Msa0264990:CDS |
| TCGGTAGGGCAGACATCAGG+GGG | 0.598437 | 2_2:-65155190 | Msa0264990:CDS |
| GGATAACGTCCTGATGGAGG+TGG | 0.599011 | 2_2:+65155592 | None:intergenic |
| ATTAGCTTTGATAGTGACCT+CGG | 0.599687 | 2_2:-65155376 | Msa0264990:CDS |
| GTTTGGCGCCAATGTCGGTA+GGG | 0.605892 | 2_2:-65155204 | Msa0264990:CDS |
| ACATTGAAACCACTTCCAGT+TGG | 0.606876 | 2_2:+65155559 | None:intergenic |
| TGCAGCCAAAAGAGTGTGCA+TGG | 0.611169 | 2_2:+65152714 | None:intergenic |
| AGTGACCTCGGTGTAGTTGG+TGG | 0.612819 | 2_2:-65155364 | Msa0264990:CDS |
| GAGCTGGTTCCAGGAGCAAG+CGG | 0.619940 | 2_2:+65155505 | None:intergenic |
| CAACAAGTTCACTTGCAGGA+TGG | 0.622286 | 2_2:-65153283 | Msa0264990:intron |
| TAACCCGGATAACGTCCTGA+TGG | 0.622648 | 2_2:+65155586 | None:intergenic |
| GTCGGTAGGGCAGACATCAG+GGG | 0.622956 | 2_2:-65155191 | Msa0264990:CDS |
| CTGGTTCCAGGAGCAAGCGG+CGG | 0.624878 | 2_2:+65155508 | None:intergenic |
| AAAGCTAATATCATCCGGCA+AGG | 0.625947 | 2_2:+65155390 | None:intergenic |
| CCGAATCAAACCCATACAGT+TGG | 0.628476 | 2_2:+65156081 | None:intergenic |
| CAAATAGGCAGTCTGCGGCA+AGG | 0.630192 | 2_2:-65153595 | Msa0264990:CDS |
| CCCGGATAACGTCCTGATGG+AGG | 0.636399 | 2_2:+65155589 | None:intergenic |
| GAAGCTGAGGTTGCAAACCA+TGG | 0.637006 | 2_2:-65153308 | Msa0264990:CDS |
| GGCTGCAACCTACCAACACT+AGG | 0.637292 | 2_2:+65152406 | None:intergenic |
| CTTTGCGCCGCGTAGATCAG+GGG | 0.647338 | 2_2:+65155911 | None:intergenic |
| TATGAACAGAGAGATACAAG+TGG | 0.648861 | 2_2:-65153355 | Msa0264990:intron |
| GGAACCAGCTCAGATTCTAG+TGG | 0.650014 | 2_2:-65155493 | Msa0264990:CDS |
| GGATTATCTTTGGGGCATGG+AGG | 0.651440 | 2_2:+65152517 | None:intergenic |
| CAGTTGGTACTACAAATGAA+AGG | 0.663413 | 2_2:-65155141 | Msa0264990:CDS |
| AGAACAGTGAGCTGAAGCTG+AGG | 0.664335 | 2_2:-65153321 | Msa0264990:CDS |
| AAGTGATTGAACTGGATTAG+GGG | 0.672133 | 2_2:-65155694 | Msa0264990:five_prime_UTR |
| CTATGACCTCTATTTCTCGG+AGG | 0.675680 | 2_2:+65155436 | None:intergenic |
| ATGGGCAAATAGGCAGTCTG+CGG | 0.682103 | 2_2:-65153600 | Msa0264990:CDS |
| GTCGTTCTCTGACGATACCG+AGG | 0.688055 | 2_2:-65155329 | Msa0264990:CDS |
| GGCGGATACGACGATGATGG+GGG | 0.706397 | 2_2:+65155526 | None:intergenic |
| TATCCATAGCCAATTAACTG+AGG | 0.712792 | 2_2:+65152283 | None:intergenic |
| TCTATCTCCCCTGATCTACG+CGG | 0.750401 | 2_2:-65155918 | Msa0264990:five_prime_UTR |
| TCGGTATCGTCAGAGAACGA+CGG | 0.757782 | 2_2:+65155331 | None:intergenic |
| CAGCACCACCAACTACACCG+AGG | 0.826194 | 2_2:+65155359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTAATTTGTTACT+AGG | - | chr2_2:65152572-65152591 | Msa0264990:CDS | 10.0% |
| !!! | TTATTATTAATTTGTTACTA+GGG | - | chr2_2:65152573-65152592 | Msa0264990:CDS | 10.0% |
| !! | AAATAACAAAAGAGAAAAAT+TGG | + | chr2_2:65152484-65152503 | None:intergenic | 15.0% |
| !! | AAAATAACTAAGAAACATTA+TGG | + | chr2_2:65153376-65153395 | None:intergenic | 15.0% |
| !! | ACAGAATAATATATAACATT+TGG | + | chr2_2:65153448-65153467 | None:intergenic | 15.0% |
| !!! | TCAAATTTTAGAAAATGTAT+TGG | - | chr2_2:65153758-65153777 | Msa0264990:intron | 15.0% |
| !!! | CAAATTTTAGAAAATGTATT+GGG | - | chr2_2:65153759-65153778 | Msa0264990:intron | 15.0% |
| !!! | AAAATTGTAAGATTTTTCTA+AGG | - | chr2_2:65154015-65154034 | Msa0264990:intron | 15.0% |
| !!! | TTTTTTTTCTATCTCTTTTT+TGG | - | chr2_2:65154612-65154631 | Msa0264990:intron | 15.0% |
| !!! | AGGACTATATTAATATTTTT+TGG | - | chr2_2:65154912-65154931 | Msa0264990:intron | 15.0% |
| !! | AGTATTTATTTAATGCAATA+TGG | - | chr2_2:65155126-65155145 | Msa0264990:CDS | 15.0% |
| !! | GACAAATATATTAATCTATT+GGG | + | chr2_2:65155208-65155227 | None:intergenic | 15.0% |
| !! | AGACAAATATATTAATCTAT+TGG | + | chr2_2:65155209-65155228 | None:intergenic | 15.0% |
| !! | TAGATTAATATATTTGTCTT+AGG | - | chr2_2:65155210-65155229 | Msa0264990:CDS | 15.0% |
| !! | TAAGAATAAAAAATAGAACA+AGG | + | chr2_2:65155913-65155932 | None:intergenic | 15.0% |
| !! | TGTATAATACTAAAATTTCT+TGG | - | chr2_2:65155987-65156006 | Msa0264990:five_prime_UTR | 15.0% |
| !! | TAATCTAGCATTCATAAATT+AGG | - | chr2_2:65153481-65153500 | Msa0264990:intron | 20.0% |
| !! | TTGTGTTTATTAATTTCAAC+AGG | + | chr2_2:65153898-65153917 | None:intergenic | 20.0% |
| !! | TGAAATTAATAAACACAACA+TGG | - | chr2_2:65153900-65153919 | Msa0264990:intron | 20.0% |
| !!! | ATACAAAATATTGTAGGTTT+TGG | - | chr2_2:65153963-65153982 | Msa0264990:intron | 20.0% |
| !!! | TTACTTTCTAAAACTGTTTT+TGG | - | chr2_2:65154353-65154372 | Msa0264990:intron | 20.0% |
| !!! | TACTTTCTAAAACTGTTTTT+GGG | - | chr2_2:65154354-65154373 | Msa0264990:intron | 20.0% |
| !! | GTTGAAATTTGAAATGATGA+AGG | + | chr2_2:65152425-65152444 | None:intergenic | 25.0% |
| !! | AATGAGCTAGTTTAAGAAAT+TGG | - | chr2_2:65152512-65152531 | Msa0264990:CDS | 25.0% |
| !! | ATGAGCTAGTTTAAGAAATT+GGG | - | chr2_2:65152513-65152532 | Msa0264990:CDS | 25.0% |
| ! | AATTGAACTTATCCATATCA+AGG | + | chr2_2:65153011-65153030 | None:intergenic | 25.0% |
| !! | TTTCTCTTTCACTATCTTTT+CGG | - | chr2_2:65153655-65153674 | Msa0264990:intron | 25.0% |
| ! | ATGAGAAAAAATCTCAGAAA+TGG | - | chr2_2:65153824-65153843 | Msa0264990:intron | 25.0% |
| !! | GGTACTTTTGTATTATACAT+AGG | + | chr2_2:65153873-65153892 | None:intergenic | 25.0% |
| ! | GTTTATTAATTTCAACAGGA+AGG | + | chr2_2:65153894-65153913 | None:intergenic | 25.0% |
| !! | TGTTATTATGGTTCATGTTT+TGG | + | chr2_2:65153930-65153949 | None:intergenic | 25.0% |
| !! | CCACAAATATAGTGTTATTA+TGG | + | chr2_2:65153942-65153961 | None:intergenic | 25.0% |
| ! | CCATAATAACACTATATTTG+TGG | - | chr2_2:65153939-65153958 | Msa0264990:intron | 25.0% |
| !!! | GTTGCGTTTTATTTATTTGA+AGG | - | chr2_2:65154249-65154268 | Msa0264990:intron | 25.0% |
| ! | TTCAAATACTACCAAAACAA+TGG | + | chr2_2:65154327-65154346 | None:intergenic | 25.0% |
| ! | TTCCAAAAAATCCCATTATT+GGG | - | chr2_2:65154388-65154407 | Msa0264990:intron | 25.0% |
| ! | TGCAATAGATAAAGCAAAAT+AGG | + | chr2_2:65154554-65154573 | None:intergenic | 25.0% |
| !!! | TTTCTATCTCTTTTTTGGTT+TGG | - | chr2_2:65154617-65154636 | Msa0264990:intron | 25.0% |
| !!! | TTCTATCTCTTTTTTGGTTT+GGG | - | chr2_2:65154618-65154637 | Msa0264990:intron | 25.0% |
| ! | AGGAAACATTTATAATGTTG+TGG | + | chr2_2:65155043-65155062 | None:intergenic | 25.0% |
| ! | TATCCTTGCAATTTACAATA+TGG | - | chr2_2:65155160-65155179 | Msa0264990:CDS | 25.0% |
| ! | ATACCATATTGTAAATTGCA+AGG | + | chr2_2:65155166-65155185 | None:intergenic | 25.0% |
| ! | AATATATTTGTCTTAGGTGA+AGG | - | chr2_2:65155216-65155235 | Msa0264990:CDS | 25.0% |
| ! | CCAAAAGAATTAAAGTTCAT+AGG | + | chr2_2:65155526-65155545 | None:intergenic | 25.0% |
| !! | CCTATGAACTTTAATTCTTT+TGG | - | chr2_2:65155523-65155542 | Msa0264990:CDS | 25.0% |
| !! | ATGAACTTTAATTCTTTTGG+AGG | - | chr2_2:65155526-65155545 | Msa0264990:CDS | 25.0% |
| !! | CTTTTTAGATTTCATTGTCT+CGG | - | chr2_2:65155863-65155882 | Msa0264990:intron | 25.0% |
| !! | GATTTTGTCAAAACTACAAT+AGG | - | chr2_2:65156050-65156069 | Msa0264990:five_prime_UTR | 25.0% |
| !! | GTTTACTTTATTGATTGAGA+TGG | - | chr2_2:65156076-65156095 | Msa0264990:five_prime_UTR | 25.0% |
| !! | TGATTGCTTAGTGTTGTTTA+GGG | - | chr2_2:65152627-65152646 | Msa0264990:CDS | 30.0% |
| AATGGAAAAGGACAAATCAT+TGG | - | chr2_2:65152663-65152682 | Msa0264990:CDS | 30.0% | |
| ATGGAAAAGGACAAATCATT+GGG | - | chr2_2:65152664-65152683 | Msa0264990:CDS | 30.0% | |
| CTATCAAAGCTAATATCATC+CGG | + | chr2_2:65152913-65152932 | None:intergenic | 30.0% | |
| ! | AGCAACGTCTAATTTTCAAA+TGG | - | chr2_2:65153038-65153057 | Msa0264990:intron | 30.0% |
| ! | GCAACGTCTAATTTTCAAAT+GGG | - | chr2_2:65153039-65153058 | Msa0264990:intron | 30.0% |
| ! | TCTAATTTTCAAATGGGTGA+GGG | - | chr2_2:65153045-65153064 | Msa0264990:intron | 30.0% |
| ! | TTCTCTTTCACTATCTTTTC+GGG | - | chr2_2:65153656-65153675 | Msa0264990:intron | 30.0% |
| ! | TTCGGGATAATTTTATTCAC+TGG | - | chr2_2:65153673-65153692 | Msa0264990:intron | 30.0% |
| CATGTTTAGCAAAACTATTG+AGG | - | chr2_2:65153723-65153742 | Msa0264990:intron | 30.0% | |
| TGTATTATACATAGGTCTTC+TGG | + | chr2_2:65153865-65153884 | None:intergenic | 30.0% | |
| TGTGGCATACAAAATATTGT+AGG | - | chr2_2:65153957-65153976 | Msa0264990:intron | 30.0% | |
| GGTATACTTTGCAATTGATA+AGG | - | chr2_2:65153984-65154003 | Msa0264990:intron | 30.0% | |
| ATACTTTGCAATTGATAAGG+AGG | - | chr2_2:65153987-65154006 | Msa0264990:intron | 30.0% | |
| ! | TAGTTGTTGTTGTTGTTCTA+AGG | - | chr2_2:65154050-65154069 | Msa0264990:intron | 30.0% |
| TAACTACAATAGACCCATAA+TGG | - | chr2_2:65154177-65154196 | Msa0264990:intron | 30.0% | |
| AACTACAATAGACCCATAAT+GGG | - | chr2_2:65154178-65154197 | Msa0264990:intron | 30.0% | |
| CAAATAAATAAAACGCAACC+TGG | + | chr2_2:65154248-65154267 | None:intergenic | 30.0% | |
| CTTCCAAAAAATCCCATTAT+TGG | - | chr2_2:65154387-65154406 | Msa0264990:intron | 30.0% | |
| AATACCATATATTGATGAGC+TGG | + | chr2_2:65154521-65154540 | None:intergenic | 30.0% | |
| AATATATGGTATTATCCCCT+GGG | - | chr2_2:65154528-65154547 | Msa0264990:intron | 30.0% | |
| TTTGCTTTATCTATTGCACT+TGG | - | chr2_2:65154556-65154575 | Msa0264990:intron | 30.0% | |
| TGCTTATATTTGTGTGTAAC+AGG | - | chr2_2:65154670-65154689 | Msa0264990:intron | 30.0% | |
| TATTTGTGTGTAACAGGATA+TGG | - | chr2_2:65154676-65154695 | Msa0264990:intron | 30.0% | |
| ATTTGTGTGTAACAGGATAT+GGG | - | chr2_2:65154677-65154696 | Msa0264990:intron | 30.0% | |
| !!! | CTATTAGCTTTTAAACCAGA+AGG | + | chr2_2:65154891-65154910 | None:intergenic | 30.0% |
| CTGGTTTAAAAGCTAATAGT+AGG | - | chr2_2:65154892-65154911 | Msa0264990:intron | 30.0% | |
| AATTGCAAGGATATTACACA+CGG | + | chr2_2:65155153-65155172 | None:intergenic | 30.0% | |
| TATAAGCTTGAGAATATCCA+AGG | - | chr2_2:65155352-65155371 | Msa0264990:CDS | 30.0% | |
| TTTAAATGACGCGTTAAAAG+AGG | - | chr2_2:65155447-65155466 | Msa0264990:CDS | 30.0% | |
| !! | AACTTTAATTCTTTTGGAGG+AGG | - | chr2_2:65155529-65155548 | Msa0264990:CDS | 30.0% |
| !! | ACTTTAATTCTTTTGGAGGA+GGG | - | chr2_2:65155530-65155549 | Msa0264990:CDS | 30.0% |
| TCTGATGAAGGATTATCTTT+GGG | + | chr2_2:65155790-65155809 | None:intergenic | 30.0% | |
| ATCTGATGAAGGATTATCTT+TGG | + | chr2_2:65155791-65155810 | None:intergenic | 30.0% | |
| TTCATCAGATGTAAATCCTT+CGG | - | chr2_2:65155801-65155820 | Msa0264990:intron | 30.0% | |
| GCTATGGATATATCAATGTA+GGG | - | chr2_2:65156025-65156044 | Msa0264990:five_prime_UTR | 30.0% | |
| GAGAAAGGGGAAATGAATAT+CGG | + | chr2_2:65152325-65152344 | None:intergenic | 35.0% | |
| ACCCTAGAAATAGAGAGAAA+GGG | + | chr2_2:65152339-65152358 | None:intergenic | 35.0% | |
| AACCCTAGAAATAGAGAGAA+AGG | + | chr2_2:65152340-65152359 | None:intergenic | 35.0% | |
| TGAAGTGATTGAACTGGATT+AGG | - | chr2_2:65152599-65152618 | Msa0264990:CDS | 35.0% | |
| GAAGTGATTGAACTGGATTA+GGG | - | chr2_2:65152600-65152619 | Msa0264990:CDS | 35.0% | |
| ! | AAGTGATTGAACTGGATTAG+GGG | - | chr2_2:65152601-65152620 | Msa0264990:CDS | 35.0% |
| !! | GTGATTGCTTAGTGTTGTTT+AGG | - | chr2_2:65152626-65152645 | Msa0264990:CDS | 35.0% |
| !! | ATTAGCTTTGATAGTGACCT+CGG | - | chr2_2:65152919-65152938 | Msa0264990:intron | 35.0% |
| CTTATCCATATCAAGGTACA+TGG | + | chr2_2:65153004-65153023 | None:intergenic | 35.0% | |
| ! | GTCTAATTTTCAAATGGGTG+AGG | - | chr2_2:65153044-65153063 | Msa0264990:intron | 35.0% |
| ! | CTAATTTTCAAATGGGTGAG+GGG | - | chr2_2:65153046-65153065 | Msa0264990:intron | 35.0% |
| ! | CAGTTGGTACTACAAATGAA+AGG | - | chr2_2:65153154-65153173 | Msa0264990:intron | 35.0% |
| TTCCAAAAAAGCAATGTCAG+CGG | - | chr2_2:65153275-65153294 | Msa0264990:intron | 35.0% | |
| ! | TAATACCTTTTTGCACGCTT+GGG | + | chr2_2:65153330-65153349 | None:intergenic | 35.0% |
| ! | ATAATACCTTTTTGCACGCT+TGG | + | chr2_2:65153331-65153350 | None:intergenic | 35.0% |
| ! | CATGTTGGTGAAAAAAAAGG+TGG | + | chr2_2:65153597-65153616 | None:intergenic | 35.0% |
| AATGACAAAACAGAGCTTTG+AGG | + | chr2_2:65153629-65153648 | None:intergenic | 35.0% | |
| ! | TCAAAGCTCTGTTTTGTCAT+TGG | - | chr2_2:65153628-65153647 | Msa0264990:intron | 35.0% |
| TTTAGCAAAACTATTGAGGC+AGG | - | chr2_2:65153727-65153746 | Msa0264990:intron | 35.0% | |
| !!! | GATTTTTCTAAGGTCTACCA+AGG | - | chr2_2:65154025-65154044 | Msa0264990:intron | 35.0% |
| ! | GCAAATGTTTTGCAAATGCT+AGG | - | chr2_2:65154148-65154167 | Msa0264990:intron | 35.0% |
| TACTTCCATGATAACATCCA+GGG | + | chr2_2:65154214-65154233 | None:intergenic | 35.0% | |
| !!! | TCTAAAACTGTTTTTGGGTG+TGG | - | chr2_2:65154359-65154378 | Msa0264990:intron | 35.0% |
| GAAATACTGCTCAGATAGAA+TGG | - | chr2_2:65154448-65154467 | Msa0264990:intron | 35.0% | |
| AGTTCCAGCTCATCAATATA+TGG | - | chr2_2:65154514-65154533 | Msa0264990:intron | 35.0% | |
| CAATATATGGTATTATCCCC+TGG | - | chr2_2:65154527-65154546 | Msa0264990:intron | 35.0% | |
| TATTGCACTTGGAAAGTGAT+GGG | - | chr2_2:65154567-65154586 | Msa0264990:intron | 35.0% | |
| CCAGAAGGTGAAATAGTAAT+TGG | + | chr2_2:65154876-65154895 | None:intergenic | 35.0% | |
| CCAATTACTATTTCACCTTC+TGG | - | chr2_2:65154873-65154892 | Msa0264990:intron | 35.0% | |
| TATGAACAGAGAGATACAAG+TGG | - | chr2_2:65154940-65154959 | Msa0264990:intron | 35.0% | |
| !! | TGGCTGCAAAATTTTGTTGT+TGG | - | chr2_2:65155258-65155277 | Msa0264990:CDS | 35.0% |
| !!! | GGCTGCAAAATTTTGTTGTT+GGG | - | chr2_2:65155259-65155278 | Msa0264990:CDS | 35.0% |
| !!! | GCAAAATTTTGTTGTTGGGT+TGG | - | chr2_2:65155263-65155282 | Msa0264990:CDS | 35.0% |
| TGCATGGCATGGTTATTATT+GGG | + | chr2_2:65155568-65155587 | None:intergenic | 35.0% | |
| TTTGTTGCTGCTGTATTTGT+TGG | + | chr2_2:65155681-65155700 | None:intergenic | 35.0% | |
| GAACAACAACAACAACAATC+AGG | - | chr2_2:65155730-65155749 | Msa0264990:intron | 35.0% | |
| CTGATGAAGGATTATCTTTG+GGG | + | chr2_2:65155789-65155808 | None:intergenic | 35.0% | |
| GAAGGATTTACATCTGATGA+AGG | + | chr2_2:65155802-65155821 | None:intergenic | 35.0% | |
| TATCCATAGCCAATTAACTG+AGG | + | chr2_2:65156015-65156034 | None:intergenic | 35.0% | |
| GGCTATGGATATATCAATGT+AGG | - | chr2_2:65156024-65156043 | Msa0264990:five_prime_UTR | 35.0% | |
| ! | TCCCCTTTCTCTCTATTTCT+AGG | - | chr2_2:65152334-65152353 | Msa0264990:three_prime_UTR | 40.0% |
| CCCTAGAAATAGAGAGAAAG+GGG | + | chr2_2:65152338-65152357 | None:intergenic | 40.0% | |
| !! | CCCCTTTCTCTCTATTTCTA+GGG | - | chr2_2:65152335-65152354 | Msa0264990:three_prime_UTR | 40.0% |
| !!! | GGGTTTTGAAGTGATTGAAC+TGG | - | chr2_2:65152593-65152612 | Msa0264990:CDS | 40.0% |
| !! | CTTAGTGTTGTTTAGGGTCA+AGG | - | chr2_2:65152633-65152652 | Msa0264990:CDS | 40.0% |
| CAAGGAATCGTGAATGGAAA+AGG | - | chr2_2:65152651-65152670 | Msa0264990:CDS | 40.0% | |
| AAGGACAAATCATTGGGTCT+TGG | - | chr2_2:65152670-65152689 | Msa0264990:CDS | 40.0% | |
| ACATTGAAACCACTTCCAGT+TGG | + | chr2_2:65152739-65152758 | None:intergenic | 40.0% | |
| GATAATCCTCCGAGAAATAG+AGG | - | chr2_2:65152853-65152872 | Msa0264990:intron | 40.0% | |
| ! | CGTCTATGACCTCTATTTCT+CGG | + | chr2_2:65152865-65152884 | None:intergenic | 40.0% |
| AAAGCTAATATCATCCGGCA+AGG | + | chr2_2:65152908-65152927 | None:intergenic | 40.0% | |
| CATGGACAACAAATCTTCCT+CGG | + | chr2_2:65152986-65153005 | None:intergenic | 40.0% | |
| GTTGTCCATGTACCTTGATA+TGG | - | chr2_2:65152996-65153015 | Msa0264990:intron | 40.0% | |
| ! | CAAACCTGAGATGTTAGTCT+CGG | - | chr2_2:65153227-65153246 | Msa0264990:intron | 40.0% |
| ! | AAACCTGAGATGTTAGTCTC+GGG | - | chr2_2:65153228-65153247 | Msa0264990:intron | 40.0% |
| ! | AATACCTTTTTGCACGCTTG+GGG | + | chr2_2:65153329-65153348 | None:intergenic | 40.0% |
| AGTCAATAATACAGACCGAG+TGG | + | chr2_2:65153573-65153592 | None:intergenic | 40.0% | |
| ! | CGGCATGTTGGTGAAAAAAA+AGG | + | chr2_2:65153600-65153619 | None:intergenic | 40.0% |
| !! | ACAGAGCTTTGAGGAATTCA+CGG | + | chr2_2:65153620-65153639 | None:intergenic | 40.0% |
| CAAAACTATTGAGGCAGGAT+AGG | - | chr2_2:65153732-65153751 | Msa0264990:intron | 40.0% | |
| !! | ATGTATTGGGTCTTTGAGAC+AGG | - | chr2_2:65153772-65153791 | Msa0264990:intron | 40.0% |
| ! | TTTGAGACAGGATAGGACTT+TGG | - | chr2_2:65153784-65153803 | Msa0264990:intron | 40.0% |
| CAACAACAACAACTAAGCCT+TGG | + | chr2_2:65154045-65154064 | None:intergenic | 40.0% | |
| CTACTTCCATGATAACATCC+AGG | + | chr2_2:65154215-65154234 | None:intergenic | 40.0% | |
| ! | ACACACTCACACCATTGTTT+TGG | - | chr2_2:65154313-65154332 | Msa0264990:intron | 40.0% |
| !!! | GGCCCAATAATGGGATTTTT+TGG | + | chr2_2:65154393-65154412 | None:intergenic | 40.0% |
| GGATCAAAAGGCCCAATAAT+GGG | + | chr2_2:65154402-65154421 | None:intergenic | 40.0% | |
| ATAAAGCAAAATAGGCCCAG+GGG | + | chr2_2:65154546-65154565 | None:intergenic | 40.0% | |
| GATAAAGCAAAATAGGCCCA+GGG | + | chr2_2:65154547-65154566 | None:intergenic | 40.0% | |
| AGATAAAGCAAAATAGGCCC+AGG | + | chr2_2:65154548-65154567 | None:intergenic | 40.0% | |
| CTATTGCACTTGGAAAGTGA+TGG | - | chr2_2:65154566-65154585 | Msa0264990:intron | 40.0% | |
| TAAGCAGTGTTTGTCGATGT+TGG | + | chr2_2:65154656-65154675 | None:intergenic | 40.0% | |
| GTAACAGGATATGGGCAAAT+AGG | - | chr2_2:65154685-65154704 | Msa0264990:intron | 40.0% | |
| GCTATATTGCTGAGCTTGAA+AGG | - | chr2_2:65154742-65154761 | Msa0264990:intron | 40.0% | |
| ! | GAAAGTGCAGACATTGCAAA+CGG | - | chr2_2:65154764-65154783 | Msa0264990:intron | 40.0% |
| AAGCTTGAGAATATCCAAGG+TGG | - | chr2_2:65155355-65155374 | Msa0264990:CDS | 40.0% | |
| TCAAGATAAACTGTCCACCT+TGG | + | chr2_2:65155372-65155391 | None:intergenic | 40.0% | |
| ! | ACGCGTCATTTAAAGCTACA+AGG | + | chr2_2:65155441-65155460 | None:intergenic | 40.0% |
| !! | ACGCATTTGAAAGTACTGAC+TGG | - | chr2_2:65155475-65155494 | Msa0264990:CDS | 40.0% |
| !! | CGCATTTGAAAGTACTGACT+GGG | - | chr2_2:65155476-65155495 | Msa0264990:CDS | 40.0% |
| AAGTTCATAGGTCCTCCATT+TGG | + | chr2_2:65155514-65155533 | None:intergenic | 40.0% | |
| GTGCATGGCATGGTTATTAT+TGG | + | chr2_2:65155569-65155588 | None:intergenic | 40.0% | |
| TTCTTGGCACCTCAGTTAAT+TGG | - | chr2_2:65156003-65156022 | Msa0264990:five_prime_UTR | 40.0% | |
| !! | GTTTGATTCGGTGACGAGAA+TGG | - | chr2_2:65152226-65152245 | Msa0264990:three_prime_UTR | 45.0% |
| CGGAATGAAGAGAGAGAAAG+TGG | + | chr2_2:65152305-65152324 | None:intergenic | 45.0% | |
| GTAGATCAGGGGAGATAGAT+TGG | + | chr2_2:65152376-65152395 | None:intergenic | 45.0% | |
| TAGGGTCAAGGAATCGTGAA+TGG | - | chr2_2:65152645-65152664 | Msa0264990:CDS | 45.0% | |
| GACAAATCATTGGGTCTTGG+CGG | - | chr2_2:65152673-65152692 | Msa0264990:CDS | 45.0% | |
| TATCCGGGTTATTCACCAAC+TGG | - | chr2_2:65152721-65152740 | Msa0264990:CDS | 45.0% | |
| !! | CTTCCAGTTGGTGAATAACC+CGG | + | chr2_2:65152727-65152746 | None:intergenic | 45.0% |
| GGTTATTCACCAACTGGAAG+TGG | - | chr2_2:65152727-65152746 | Msa0264990:CDS | 45.0% | |
| AAAGCCACTAGAATCTGAGC+TGG | + | chr2_2:65152809-65152828 | None:intergenic | 45.0% | |
| ! | CTATGACCTCTATTTCTCGG+AGG | + | chr2_2:65152862-65152881 | None:intergenic | 45.0% |
| TTCCGAGATTCTTACCTTGC+CGG | - | chr2_2:65152891-65152910 | Msa0264990:intron | 45.0% | |
| ATCCGGCAAGGTAAGAATCT+CGG | + | chr2_2:65152896-65152915 | None:intergenic | 45.0% | |
| ! | TACCTCTTCTGGGGAAAACA+TGG | - | chr2_2:65153131-65153150 | Msa0264990:intron | 45.0% |
| TTGTTGACCCATCCATGGAT+TGG | + | chr2_2:65153203-65153222 | None:intergenic | 45.0% | |
| ! | GATTGTTGTTGACCCATCCA+TGG | + | chr2_2:65153208-65153227 | None:intergenic | 45.0% |
| !!! | TGCCGCTGACATTGCTTTTT+TGG | + | chr2_2:65153280-65153299 | None:intergenic | 45.0% |
| ATCCTGACGTGTATTCCACT+CGG | - | chr2_2:65153555-65153574 | Msa0264990:CDS | 45.0% | |
| TTGAGGAATTCACGGCATGT+TGG | + | chr2_2:65153612-65153631 | None:intergenic | 45.0% | |
| !! | TTGGGTCTTTGAGACAGGAT+AGG | - | chr2_2:65153777-65153796 | Msa0264990:intron | 45.0% |
| CCATGATAACATCCAGGGAA+GGG | + | chr2_2:65154209-65154228 | None:intergenic | 45.0% | |
| TCCATGATAACATCCAGGGA+AGG | + | chr2_2:65154210-65154229 | None:intergenic | 45.0% | |
| GGGATCAAAAGGCCCAATAA+TGG | + | chr2_2:65154403-65154422 | None:intergenic | 45.0% | |
| ATAGAATGGCCTCCCTTAGA+GGG | - | chr2_2:65154462-65154481 | Msa0264990:intron | 45.0% | |
| GTATAGACTGTGCCCTCTAA+GGG | + | chr2_2:65154477-65154496 | None:intergenic | 45.0% | |
| TGTATAGACTGTGCCCTCTA+AGG | + | chr2_2:65154478-65154497 | None:intergenic | 45.0% | |
| TGCGCAGTTAACTCTCTTAC+AGG | - | chr2_2:65154803-65154822 | Msa0264990:intron | 45.0% | |
| !! | CAAGTGAACTTGTTGCTCCA+TGG | + | chr2_2:65155007-65155026 | None:intergenic | 45.0% |
| CAACAAGTTCACTTGCAGGA+TGG | - | chr2_2:65155012-65155031 | Msa0264990:CDS | 45.0% | |
| AGCAGCAAAGTAGTAGCTTC+AGG | + | chr2_2:65155063-65155082 | None:intergenic | 45.0% | |
| GTGCATGTTTAGTGTGAAGC+TGG | - | chr2_2:65155238-65155257 | Msa0264990:CDS | 45.0% | |
| TTCATAGGTCCTCCATTTGG+CGG | + | chr2_2:65155511-65155530 | None:intergenic | 45.0% | |
| !! | TGATGTTGCTGCTGTTTCTG+AGG | + | chr2_2:65155634-65155653 | None:intergenic | 45.0% |
| !! | GAAGGATTATCTTTGGGGCA+TGG | + | chr2_2:65155784-65155803 | None:intergenic | 45.0% |
| CGCAGTTTCTCAACAATCCT+TGG | + | chr2_2:65155830-65155849 | None:intergenic | 45.0% | |
| GCACCTCAGTTAATTGGCTA+TGG | - | chr2_2:65156009-65156028 | Msa0264990:five_prime_UTR | 45.0% | |
| TCTATCTCCCCTGATCTACG+CGG | - | chr2_2:65152377-65152396 | Msa0264990:three_prime_UTR | 50.0% | |
| AAATCATTGGGTCTTGGCGG+TGG | - | chr2_2:65152676-65152695 | Msa0264990:CDS | 50.0% | |
| ACCTCCATCAGGACGTTATC+CGG | - | chr2_2:65152705-65152724 | Msa0264990:CDS | 50.0% | |
| TAACCCGGATAACGTCCTGA+TGG | + | chr2_2:65152712-65152731 | None:intergenic | 50.0% | |
| ! | CTAGAATCTGAGCTGGTTCC+AGG | + | chr2_2:65152802-65152821 | None:intergenic | 50.0% |
| GGAACCAGCTCAGATTCTAG+TGG | - | chr2_2:65152802-65152821 | Msa0264990:CDS | 50.0% | |
| ! | GATAGTGACCTCGGTGTAGT+TGG | - | chr2_2:65152928-65152947 | Msa0264990:intron | 50.0% |
| TCGGTATCGTCAGAGAACGA+CGG | + | chr2_2:65152967-65152986 | None:intergenic | 50.0% | |
| ATCAGGTTTGGCGCCAATGT+CGG | - | chr2_2:65153086-65153105 | Msa0264990:intron | 50.0% | |
| ! | TGCCATGTTTTCCCCAGAAG+AGG | + | chr2_2:65153136-65153155 | None:intergenic | 50.0% |
| TCTGGGGAAAACATGGCAGT+TGG | - | chr2_2:65153138-65153157 | Msa0264990:intron | 50.0% | |
| ! | CTGTGCTGGTGTCTGATTCT+GGG | + | chr2_2:65153180-65153199 | None:intergenic | 50.0% |
| AGCACAGCCAATCCATGGAT+GGG | - | chr2_2:65153193-65153212 | Msa0264990:intron | 50.0% | |
| GAACCCGAGACTAACATCTC+AGG | + | chr2_2:65153234-65153253 | None:intergenic | 50.0% | |
| TTGACCCCAAGCGTGCAAAA+AGG | - | chr2_2:65153322-65153341 | Msa0264990:CDS | 50.0% | |
| GGAAGGGTTGGACCCATTAT+GGG | + | chr2_2:65154193-65154212 | None:intergenic | 50.0% | |
| GATAACATCCAGGGAAGGGT+TGG | + | chr2_2:65154205-65154224 | None:intergenic | 50.0% | |
| CCCTTCCCTGGATGTTATCA+TGG | - | chr2_2:65154206-65154225 | Msa0264990:intron | 50.0% | |
| ! | GGAAGTAGCTCTATAGCACC+AGG | - | chr2_2:65154227-65154246 | Msa0264990:intron | 50.0% |
| ATCAATACCTGCCGCAGTGT+GGG | + | chr2_2:65154428-65154447 | None:intergenic | 50.0% | |
| GATAGAATGGCCTCCCTTAG+AGG | - | chr2_2:65154461-65154480 | Msa0264990:intron | 50.0% | |
| ATGGGCAAATAGGCAGTCTG+CGG | - | chr2_2:65154695-65154714 | Msa0264990:intron | 50.0% | |
| CTGCGGCAAGGTCAAAAGAA+AGG | - | chr2_2:65154712-65154731 | Msa0264990:intron | 50.0% | |
| AGAACAGTGAGCTGAAGCTG+AGG | - | chr2_2:65154974-65154993 | Msa0264990:CDS | 50.0% | |
| GAAGCTGAGGTTGCAAACCA+TGG | - | chr2_2:65154987-65155006 | Msa0264990:CDS | 50.0% | |
| GGAGCAACAAGTTCACTTGC+AGG | - | chr2_2:65155008-65155027 | Msa0264990:CDS | 50.0% | |
| ! | CCAAAAGAGTGTGCATGGCA+TGG | + | chr2_2:65155579-65155598 | None:intergenic | 50.0% |
| ! | CCATGCCATGCACACTCTTT+TGG | - | chr2_2:65155576-65155595 | Msa0264990:CDS | 50.0% |
| ! | TGCAGCCAAAAGAGTGTGCA+TGG | + | chr2_2:65155584-65155603 | None:intergenic | 50.0% |
| ACAACAAATGCAGCAGCAGC+AGG | - | chr2_2:65155708-65155727 | Msa0264990:intron | 50.0% | |
| !! | GGATTATCTTTGGGGCATGG+AGG | + | chr2_2:65155781-65155800 | None:intergenic | 50.0% |
| TGTAAATCCTTCGGCAGCCA+AGG | - | chr2_2:65155810-65155829 | Msa0264990:intron | 50.0% | |
| !! | TTGTCTCGGTGTCCTAGTGT+TGG | - | chr2_2:65155877-65155896 | Msa0264990:intron | 50.0% |
| ! | GGTGGTTTTCCACCTCCATC+AGG | - | chr2_2:65152694-65152713 | Msa0264990:CDS | 55.0% |
| GGATAACGTCCTGATGGAGG+TGG | + | chr2_2:65152706-65152725 | None:intergenic | 55.0% | |
| CCTCCATCAGGACGTTATCC+GGG | - | chr2_2:65152706-65152725 | Msa0264990:CDS | 55.0% | |
| ! | AGTGACCTCGGTGTAGTTGG+TGG | - | chr2_2:65152931-65152950 | Msa0264990:intron | 55.0% |
| !! | GGTGTAGTTGGTGGTGCTGA+TGG | - | chr2_2:65152940-65152959 | Msa0264990:intron | 55.0% |
| GTCGTTCTCTGACGATACCG+AGG | - | chr2_2:65152966-65152985 | Msa0264990:intron | 55.0% | |
| ! | TCTAATGCTGCCGGAGCATC+AGG | - | chr2_2:65153069-65153088 | Msa0264990:intron | 55.0% |
| GTTTGGCGCCAATGTCGGTA+GGG | - | chr2_2:65153091-65153110 | Msa0264990:intron | 55.0% | |
| GATGTCTGCCCTACCGACAT+TGG | + | chr2_2:65153102-65153121 | None:intergenic | 55.0% | |
| ATGTCGGTAGGGCAGACATC+AGG | - | chr2_2:65153102-65153121 | Msa0264990:intron | 55.0% | |
| TGTCGGTAGGGCAGACATCA+GGG | - | chr2_2:65153103-65153122 | Msa0264990:intron | 55.0% | |
| ! | GCTGTGCTGGTGTCTGATTC+TGG | + | chr2_2:65153181-65153200 | None:intergenic | 55.0% |
| ACACCAGCACAGCCAATCCA+TGG | - | chr2_2:65153188-65153207 | Msa0264990:intron | 55.0% | |
| !! | CATCCATGGATTGGCTGTGC+TGG | + | chr2_2:65153194-65153213 | None:intergenic | 55.0% |
| CAGCACAGCCAATCCATGGA+TGG | - | chr2_2:65153192-65153211 | Msa0264990:intron | 55.0% | |
| TGCACGCTTGGGGTCAATCA+AGG | + | chr2_2:65153319-65153338 | None:intergenic | 55.0% | |
| GACCGAGTGGAATACACGTC+AGG | + | chr2_2:65153560-65153579 | None:intergenic | 55.0% | |
| GGGAAGGGTTGGACCCATTA+TGG | + | chr2_2:65154194-65154213 | None:intergenic | 55.0% | |
| ! | TAATGGGTCCAACCCTTCCC+TGG | - | chr2_2:65154194-65154213 | Msa0264990:intron | 55.0% |
| CAGTGTGGGAGGGGATCAAA+AGG | + | chr2_2:65154414-65154433 | None:intergenic | 55.0% | |
| TTTGATCCCCTCCCACACTG+CGG | - | chr2_2:65154414-65154433 | Msa0264990:intron | 55.0% | |
| CATCAATACCTGCCGCAGTG+TGG | + | chr2_2:65154429-65154448 | None:intergenic | 55.0% | |
| ! | TAGACTGTGCCCTCTAAGGG+AGG | + | chr2_2:65154474-65154493 | None:intergenic | 55.0% |
| CAAATAGGCAGTCTGCGGCA+AGG | - | chr2_2:65154700-65154719 | Msa0264990:intron | 55.0% | |
| CAAGCTATGCCGCCAAATGG+AGG | - | chr2_2:65155499-65155518 | Msa0264990:CDS | 55.0% | |
| CAACAATCCTTGGCTGCCGA+AGG | + | chr2_2:65155820-65155839 | None:intergenic | 55.0% | |
| !! | CTCGGTGTCCTAGTGTTGGT+AGG | - | chr2_2:65155881-65155900 | Msa0264990:intron | 55.0% |
| GGCTGCAACCTACCAACACT+AGG | + | chr2_2:65155892-65155911 | None:intergenic | 55.0% | |
| CTTTGCGCCGCGTAGATCAG+GGG | + | chr2_2:65152387-65152406 | None:intergenic | 60.0% | |
| CCTTTGCGCCGCGTAGATCA+GGG | + | chr2_2:65152388-65152407 | None:intergenic | 60.0% | |
| ACCTTTGCGCCGCGTAGATC+AGG | + | chr2_2:65152389-65152408 | None:intergenic | 60.0% | |
| CCCGGATAACGTCCTGATGG+AGG | + | chr2_2:65152709-65152728 | None:intergenic | 60.0% | |
| ! | GGCGGATACGACGATGATGG+GGG | + | chr2_2:65152772-65152791 | None:intergenic | 60.0% |
| CGGCGGATACGACGATGATG+GGG | + | chr2_2:65152773-65152792 | None:intergenic | 60.0% | |
| GCGGCGGATACGACGATGAT+GGG | + | chr2_2:65152774-65152793 | None:intergenic | 60.0% | |
| AGCGGCGGATACGACGATGA+TGG | + | chr2_2:65152775-65152794 | None:intergenic | 60.0% | |
| ! | GAGCTGGTTCCAGGAGCAAG+CGG | + | chr2_2:65152793-65152812 | None:intergenic | 60.0% |
| CAGCACCACCAACTACACCG+AGG | + | chr2_2:65152939-65152958 | None:intergenic | 60.0% | |
| GGTGAGGGGTCTAATGCTGC+CGG | - | chr2_2:65153060-65153079 | Msa0264990:intron | 60.0% | |
| ! | TGCTGCCGGAGCATCAGGTT+TGG | - | chr2_2:65153074-65153093 | Msa0264990:intron | 60.0% |
| TGGCGCCAAACCTGATGCTC+CGG | + | chr2_2:65153082-65153101 | None:intergenic | 60.0% | |
| GGTTTGGCGCCAATGTCGGT+AGG | - | chr2_2:65153090-65153109 | Msa0264990:intron | 60.0% | |
| GTCGGTAGGGCAGACATCAG+GGG | - | chr2_2:65153104-65153123 | Msa0264990:intron | 60.0% | |
| TCGGTAGGGCAGACATCAGG+GGG | - | chr2_2:65153105-65153124 | Msa0264990:intron | 60.0% | |
| !! | TCAGGGGGAGGTACCTCTTC+TGG | - | chr2_2:65153120-65153139 | Msa0264990:intron | 60.0% |
| !! | CAGGGGGAGGTACCTCTTCT+GGG | - | chr2_2:65153121-65153140 | Msa0264990:intron | 60.0% |
| !! | AGGGGGAGGTACCTCTTCTG+GGG | - | chr2_2:65153122-65153141 | Msa0264990:intron | 60.0% |
| ATACCTGCCGCAGTGTGGGA+GGG | + | chr2_2:65154424-65154443 | None:intergenic | 60.0% | |
| AATACCTGCCGCAGTGTGGG+AGG | + | chr2_2:65154425-65154444 | None:intergenic | 60.0% | |
| GGGCAAGCTATGCCGCCAAA+TGG | - | chr2_2:65155496-65155515 | Msa0264990:CDS | 60.0% | |
| CCCTGATCTACGCGGCGCAA+AGG | - | chr2_2:65152385-65152404 | Msa0264990:three_prime_UTR | 65.0% | |
| TCGTATCCGCCGCTTGCTCC+TGG | - | chr2_2:65152781-65152800 | Msa0264990:CDS | 65.0% | |
| CTGGTTCCAGGAGCAAGCGG+CGG | + | chr2_2:65152790-65152809 | None:intergenic | 65.0% | |
| GTAGGGCAGACATCAGGGGG+AGG | - | chr2_2:65153108-65153127 | Msa0264990:intron | 65.0% | |
| TACCTGCCGCAGTGTGGGAG+GGG | + | chr2_2:65154423-65154442 | None:intergenic | 65.0% | |
| ATCCCCTCCCACACTGCGGC+AGG | - | chr2_2:65154418-65154437 | Msa0264990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 65152215 | 65156102 | 65152215 | ID=Msa0264990;Name=Msa0264990 |
| chr2_2 | mRNA | 65152215 | 65156102 | 65152215 | ID=Msa0264990-mRNA-1;Parent=Msa0264990;Name=Msa0264990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=262|1|1|1|0.75|0.6|5|262|430 |
| chr2_2 | exon | 65152215 | 65152871 | 65152215 | ID=Msa0264990-mRNA-1:exon:20449;Parent=Msa0264990-mRNA-1 |
| chr2_2 | exon | 65153284 | 65153368 | 65153284 | ID=Msa0264990-mRNA-1:exon:20448;Parent=Msa0264990-mRNA-1 |
| chr2_2 | exon | 65153493 | 65153625 | 65153493 | ID=Msa0264990-mRNA-1:exon:20447;Parent=Msa0264990-mRNA-1 |
| chr2_2 | exon | 65154974 | 65155723 | 65154974 | ID=Msa0264990-mRNA-1:exon:20446;Parent=Msa0264990-mRNA-1 |
| chr2_2 | exon | 65155911 | 65156102 | 65155911 | ID=Msa0264990-mRNA-1:exon:20445;Parent=Msa0264990-mRNA-1 |
| chr2_2 | five_prime_UTR | 65155911 | 65156102 | 65155911 | ID=Msa0264990-mRNA-1:five_prime_utr;Parent=Msa0264990-mRNA-1 |
| chr2_2 | five_prime_UTR | 65155654 | 65155723 | 65155654 | ID=Msa0264990-mRNA-1:five_prime_utr;Parent=Msa0264990-mRNA-1 |
| chr2_2 | CDS | 65154974 | 65155653 | 65154974 | ID=Msa0264990-mRNA-1:cds;Parent=Msa0264990-mRNA-1 |
| chr2_2 | CDS | 65153493 | 65153625 | 65153493 | ID=Msa0264990-mRNA-1:cds;Parent=Msa0264990-mRNA-1 |
| chr2_2 | CDS | 65153284 | 65153368 | 65153284 | ID=Msa0264990-mRNA-1:cds;Parent=Msa0264990-mRNA-1 |
| chr2_2 | CDS | 65152477 | 65152871 | 65152477 | ID=Msa0264990-mRNA-1:cds;Parent=Msa0264990-mRNA-1 |
| chr2_2 | three_prime_UTR | 65152215 | 65152476 | 65152215 | ID=Msa0264990-mRNA-1:three_prime_utr;Parent=Msa0264990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
