Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265950 | KAB1227683.1 | 71.698 | 53 | 15 | 0 | 1 | 53 | 370 | 422 | 5.67e-16 | 81.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265950 | sp|Q9C690|BH122_ARATH | 86.486 | 37 | 5 | 0 | 1 | 37 | 330 | 366 | 5.16e-15 | 70.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265950 | A0A6A1WSP7 | 71.698 | 53 | 15 | 0 | 1 | 53 | 370 | 422 | 2.71e-16 | 81.6 |
Gene ID | Type | Classification |
---|---|---|
Msa0265950 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265950 | MtrunA17_Chr2g0329041 | 100.000 | 36 | 0 | 0 | 1 | 36 | 358 | 393 | 9.14e-18 | 75.5 |
Msa0265950 | MtrunA17_Chr1g0174271 | 83.784 | 37 | 6 | 0 | 1 | 37 | 324 | 360 | 1.87e-15 | 68.9 |
Msa0265950 | MtrunA17_Chr4g0032951 | 86.111 | 36 | 5 | 0 | 1 | 36 | 381 | 416 | 3.19e-15 | 68.2 |
Msa0265950 | MtrunA17_Chr7g0258181 | 79.412 | 34 | 7 | 0 | 1 | 34 | 269 | 302 | 2.56e-12 | 59.7 |
Msa0265950 | MtrunA17_Chr1g0213791 | 64.444 | 45 | 13 | 1 | 1 | 42 | 291 | 335 | 3.17e-12 | 59.7 |
Msa0265950 | MtrunA17_Chr3g0087771 | 66.667 | 42 | 13 | 1 | 1 | 42 | 348 | 388 | 1.44e-11 | 57.8 |
Msa0265950 | MtrunA17_Chr8g0351881 | 73.529 | 34 | 9 | 0 | 1 | 34 | 342 | 375 | 3.71e-11 | 56.6 |
Msa0265950 | MtrunA17_Chr4g0014771 | 72.222 | 36 | 10 | 0 | 1 | 36 | 144 | 179 | 4.53e-11 | 55.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265950 | AT1G51140.1 | 86.486 | 37 | 5 | 0 | 1 | 37 | 330 | 366 | 5.24e-16 | 70.9 |
Msa0265950 | AT2G42280.1 | 91.176 | 34 | 3 | 0 | 1 | 34 | 305 | 338 | 5.12e-15 | 67.8 |
Msa0265950 | AT2G42280.3 | 91.176 | 34 | 3 | 0 | 1 | 34 | 305 | 338 | 5.45e-15 | 67.8 |
Msa0265950 | AT4G09180.1 | 75.000 | 36 | 9 | 0 | 1 | 36 | 210 | 245 | 1.31e-12 | 60.8 |
Msa0265950 | AT1G35460.1 | 72.222 | 36 | 10 | 0 | 1 | 36 | 207 | 242 | 2.86e-12 | 59.7 |
Msa0265950 | AT2G43140.2 | 67.568 | 37 | 12 | 0 | 1 | 37 | 257 | 293 | 1.89e-11 | 57.8 |
Msa0265950 | AT1G05805.1 | 72.222 | 36 | 10 | 0 | 1 | 36 | 309 | 344 | 2.19e-11 | 57.8 |
Msa0265950 | AT2G43140.1 | 67.568 | 37 | 12 | 0 | 1 | 37 | 160 | 196 | 2.91e-11 | 56.6 |
Find 27 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCCTTTCGGCAATGCTTCT+TGG | 0.230259 | 2_2:-66364231 | None:intergenic |
CCACTAATCCGCCTAAAATT+TGG | 0.247738 | 2_2:-66366238 | None:intergenic |
CCCTTTCGGCAATGCTTCTT+GGG | 0.290663 | 2_2:-66364230 | None:intergenic |
GGCGGATTAGTGGTGGTAAT+GGG | 0.307921 | 2_2:+66366248 | Msa0265950:CDS |
CATGGTACCTTATCCATGTT+TGG | 0.320678 | 2_2:-66364655 | None:intergenic |
TAAATTGGCTTCAGGTTAGA+AGG | 0.325551 | 2_2:+66364590 | Msa0265950:intron |
ATCAATAATCCATACCCTTT+CGG | 0.345815 | 2_2:-66364244 | None:intergenic |
CCCAAGAAGCATTGCCGAAA+GGG | 0.390620 | 2_2:+66364230 | Msa0265950:five_prime_UTR |
TTCGGCAATGCTTCTTGGGT+GGG | 0.408101 | 2_2:-66364226 | None:intergenic |
AGGCGGATTAGTGGTGGTAA+TGG | 0.425696 | 2_2:+66366247 | Msa0265950:CDS |
CTAAAATTAGTGAGCGTATG+AGG | 0.443405 | 2_2:+66364614 | Msa0265950:exon |
ATGGTACCTTATCCATGTTT+GGG | 0.462347 | 2_2:-66364654 | None:intergenic |
TATGAGGAAGCTACAAGATC+TGG | 0.475457 | 2_2:+66364630 | Msa0265950:exon |
TTTCGGCAATGCTTCTTGGG+TGG | 0.478638 | 2_2:-66364227 | None:intergenic |
TCTGGTCCCAAACATGGATA+AGG | 0.497918 | 2_2:+66364648 | Msa0265950:CDS |
CATGTGGCAGGTCGACAAAT+CGG | 0.503283 | 2_2:-66366164 | None:intergenic |
GGCAATGCTTCTTGGGTGGG+TGG | 0.511007 | 2_2:-66364223 | None:intergenic |
CACAGCAGATATGTTGGACT+TGG | 0.518004 | 2_2:+66364783 | Msa0265950:CDS |
AACAAACACAGCAGATATGT+TGG | 0.533839 | 2_2:+66364777 | Msa0265950:CDS |
ATTTAACATCAACATGTGGC+AGG | 0.548466 | 2_2:-66366176 | None:intergenic |
AGATATGTTGGACTTGGCTG+TGG | 0.548724 | 2_2:+66364789 | Msa0265950:CDS |
AGACCTTCAAAAGCAAGCTC+AGG | 0.554514 | 2_2:+66364822 | Msa0265950:CDS |
ACAAGATCTGGTCCCAAACA+TGG | 0.576424 | 2_2:+66364642 | Msa0265950:CDS |
GCCTAAAATTTGGCAAAGCT+AGG | 0.577899 | 2_2:-66366228 | None:intergenic |
ACCCAAGAAGCATTGCCGAA+AGG | 0.582792 | 2_2:+66364229 | Msa0265950:five_prime_UTR |
GCGGATTAGTGGTGGTAATG+GGG | 0.583889 | 2_2:+66366249 | Msa0265950:CDS |
GAAAATTTAACATCAACATG+TGG | 0.628954 | 2_2:-66366180 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAAAAAATATATATATAG+GGG | - | chr2_2:66365976-66365995 | None:intergenic | 10.0% |
!! | CATCAAAAAAATATATATAT+AGG | - | chr2_2:66365978-66365997 | None:intergenic | 10.0% |
!! | TCAAAAAAATATATATATAG+GGG | - | chr2_2:66365976-66365995 | None:intergenic | 10.0% |
!! | CATCAAAAAAATATATATAT+AGG | - | chr2_2:66365978-66365997 | None:intergenic | 10.0% |
!! | AACAAAAGAAAAGTAATATA+GGG | - | chr2_2:66364430-66364449 | None:intergenic | 15.0% |
!! | AAACAAAAGAAAAGTAATAT+AGG | - | chr2_2:66364431-66364450 | None:intergenic | 15.0% |
!!! | ATATTACTTTTCTTTTGTTT+AGG | + | chr2_2:66364431-66364450 | Msa0265950:intron | 15.0% |
!! | CTAAAACTAAATATGTAAAT+TGG | - | chr2_2:66364467-66364486 | None:intergenic | 15.0% |
!! | AATGAAAAGAGTAATATAAA+CGG | - | chr2_2:66365493-66365512 | None:intergenic | 15.0% |
!!! | TTAACACTTACTTTTTATAT+TGG | + | chr2_2:66365753-66365772 | Msa0265950:intron | 15.0% |
!! | TATGATGTAATATGATTTAA+GGG | + | chr2_2:66365818-66365837 | Msa0265950:intron | 15.0% |
!!! | TTTTTAGAAATTATGTATGA+CGG | - | chr2_2:66366042-66366061 | None:intergenic | 15.0% |
!!! | ATACATAATTTCTAAAAATG+CGG | + | chr2_2:66366044-66366063 | Msa0265950:intron | 15.0% |
!! | ACATGTAAAATAAGAAAAAT+AGG | - | chr2_2:66366208-66366227 | None:intergenic | 15.0% |
!! | AACAAAAGAAAAGTAATATA+GGG | - | chr2_2:66364430-66364449 | None:intergenic | 15.0% |
!! | AAACAAAAGAAAAGTAATAT+AGG | - | chr2_2:66364431-66364450 | None:intergenic | 15.0% |
!!! | ATATTACTTTTCTTTTGTTT+AGG | + | chr2_2:66364431-66364450 | Msa0265950:intron | 15.0% |
!! | CTAAAACTAAATATGTAAAT+TGG | - | chr2_2:66364467-66364486 | None:intergenic | 15.0% |
!! | AATGAAAAGAGTAATATAAA+CGG | - | chr2_2:66365493-66365512 | None:intergenic | 15.0% |
!!! | TTAACACTTACTTTTTATAT+TGG | + | chr2_2:66365753-66365772 | Msa0265950:intron | 15.0% |
!! | TATGATGTAATATGATTTAA+GGG | + | chr2_2:66365818-66365837 | Msa0265950:intron | 15.0% |
!!! | TTTTTAGAAATTATGTATGA+CGG | - | chr2_2:66366042-66366061 | None:intergenic | 15.0% |
!!! | ATACATAATTTCTAAAAATG+CGG | + | chr2_2:66366044-66366063 | Msa0265950:intron | 15.0% |
!! | ACATGTAAAATAAGAAAAAT+AGG | - | chr2_2:66366208-66366227 | None:intergenic | 15.0% |
!!! | TACTATTAAGACATGATTTT+TGG | + | chr2_2:66364492-66364511 | Msa0265950:intron | 20.0% |
!!! | ACTATTAAGACATGATTTTT+GGG | + | chr2_2:66364493-66364512 | Msa0265950:intron | 20.0% |
!! | AATTATTACAAATCTGTACA+TGG | - | chr2_2:66365049-66365068 | None:intergenic | 20.0% |
!! | TGTACAGATTTGTAATAATT+TGG | + | chr2_2:66365049-66365068 | Msa0265950:intron | 20.0% |
!! | TAACAAATAAAAGCTAATCT+AGG | - | chr2_2:66365095-66365114 | None:intergenic | 20.0% |
!!! | CGTACATATTTGTTATTATA+CGG | - | chr2_2:66365361-66365380 | None:intergenic | 20.0% |
!! | TATAACCAACAAAAATATGT+CGG | - | chr2_2:66365441-66365460 | None:intergenic | 20.0% |
!! | ATATGATGAATTTGTATTTG+AGG | + | chr2_2:66365463-66365482 | Msa0265950:intron | 20.0% |
!!! | ACTTTTATAGTTATTAACGA+AGG | + | chr2_2:66365678-66365697 | Msa0265950:intron | 20.0% |
!!! | CTTTTATAGTTATTAACGAA+GGG | + | chr2_2:66365679-66365698 | Msa0265950:intron | 20.0% |
!! | GTATGATGTAATATGATTTA+AGG | + | chr2_2:66365817-66365836 | Msa0265950:intron | 20.0% |
!!! | TTTGTTATGAAGATTTGTTT+TGG | + | chr2_2:66365872-66365891 | Msa0265950:intron | 20.0% |
!!! | TTGTTATGAAGATTTGTTTT+GGG | + | chr2_2:66365873-66365892 | Msa0265950:intron | 20.0% |
!!! | AGAAACATATATTGATTGTT+AGG | - | chr2_2:66366125-66366144 | None:intergenic | 20.0% |
!!! | ATGTTTCTTGCTTTTATTTT+TGG | + | chr2_2:66366137-66366156 | Msa0265950:intron | 20.0% |
!!! | TACTATTAAGACATGATTTT+TGG | + | chr2_2:66364492-66364511 | Msa0265950:intron | 20.0% |
!!! | ACTATTAAGACATGATTTTT+GGG | + | chr2_2:66364493-66364512 | Msa0265950:intron | 20.0% |
!! | AATTATTACAAATCTGTACA+TGG | - | chr2_2:66365049-66365068 | None:intergenic | 20.0% |
!! | TGTACAGATTTGTAATAATT+TGG | + | chr2_2:66365049-66365068 | Msa0265950:intron | 20.0% |
!! | TAACAAATAAAAGCTAATCT+AGG | - | chr2_2:66365095-66365114 | None:intergenic | 20.0% |
!!! | CGTACATATTTGTTATTATA+CGG | - | chr2_2:66365361-66365380 | None:intergenic | 20.0% |
!! | TATAACCAACAAAAATATGT+CGG | - | chr2_2:66365441-66365460 | None:intergenic | 20.0% |
!! | ATATGATGAATTTGTATTTG+AGG | + | chr2_2:66365463-66365482 | Msa0265950:intron | 20.0% |
!!! | ACTTTTATAGTTATTAACGA+AGG | + | chr2_2:66365678-66365697 | Msa0265950:intron | 20.0% |
!!! | CTTTTATAGTTATTAACGAA+GGG | + | chr2_2:66365679-66365698 | Msa0265950:intron | 20.0% |
!! | GTATGATGTAATATGATTTA+AGG | + | chr2_2:66365817-66365836 | Msa0265950:intron | 20.0% |
!!! | TTTGTTATGAAGATTTGTTT+TGG | + | chr2_2:66365872-66365891 | Msa0265950:intron | 20.0% |
!!! | TTGTTATGAAGATTTGTTTT+GGG | + | chr2_2:66365873-66365892 | Msa0265950:intron | 20.0% |
!!! | AGAAACATATATTGATTGTT+AGG | - | chr2_2:66366125-66366144 | None:intergenic | 20.0% |
!!! | ATGTTTCTTGCTTTTATTTT+TGG | + | chr2_2:66366137-66366156 | Msa0265950:intron | 20.0% |
!!! | TTTTTACCTTAGTTCTTATG+AGG | + | chr2_2:66364277-66364296 | Msa0265950:intron | 25.0% |
! | TAGAATTATCTATAACCAAG+TGG | - | chr2_2:66364393-66364412 | None:intergenic | 25.0% |
!! | CTATTAAGACATGATTTTTG+GGG | + | chr2_2:66364494-66364513 | Msa0265950:intron | 25.0% |
! | CTCTTAACACATCATTAAAT+TGG | + | chr2_2:66364575-66364594 | Msa0265950:intron | 25.0% |
! | CATTCACATAAATTAACGTA+TGG | - | chr2_2:66364717-66364736 | None:intergenic | 25.0% |
! | ATCTTCATTATGTACATCAA+GGG | - | chr2_2:66365150-66365169 | None:intergenic | 25.0% |
! | AAGATGGAGATAAATTAGTA+GGG | + | chr2_2:66365165-66365184 | Msa0265950:intron | 25.0% |
!!! | AATTAAGTTGAGTGTAATTG+AGG | + | chr2_2:66365241-66365260 | Msa0265950:intron | 25.0% |
!!! | ATTAAGTTGAGTGTAATTGA+GGG | + | chr2_2:66365242-66365261 | Msa0265950:intron | 25.0% |
! | TAGATCCAATTTAAGCATTT+AGG | + | chr2_2:66365302-66365321 | Msa0265950:intron | 25.0% |
! | AGATCCAATTTAAGCATTTA+GGG | + | chr2_2:66365303-66365322 | Msa0265950:intron | 25.0% |
! | TAGATTTCATCACCAAATAT+GGG | - | chr2_2:66365329-66365348 | None:intergenic | 25.0% |
! | ATAGATTTCATCACCAAATA+TGG | - | chr2_2:66365330-66365349 | None:intergenic | 25.0% |
!!! | TATTTGGTGATGAAATCTAT+TGG | + | chr2_2:66365330-66365349 | Msa0265950:intron | 25.0% |
!!! | TCATTTTGTTTCTTCAATGT+TGG | + | chr2_2:66365508-66365527 | Msa0265950:intron | 25.0% |
!!! | GTTTTAAGACTCAAAATGTA+AGG | - | chr2_2:66365621-66365640 | None:intergenic | 25.0% |
!!! | TGTTATGAAGATTTGTTTTG+GGG | + | chr2_2:66365874-66365893 | Msa0265950:intron | 25.0% |
!! | ACACTACTAGTTTGATTAAT+TGG | + | chr2_2:66365901-66365920 | Msa0265950:intron | 25.0% |
!! | ACTAGTTTGATTAATTGGTT+AGG | + | chr2_2:66365906-66365925 | Msa0265950:intron | 25.0% |
! | CTAGTTTGATTAATTGGTTA+GGG | + | chr2_2:66365907-66365926 | Msa0265950:intron | 25.0% |
! | GAAAATTTAACATCAACATG+TGG | - | chr2_2:66366183-66366202 | None:intergenic | 25.0% |
!!! | TTTTTACCTTAGTTCTTATG+AGG | + | chr2_2:66364277-66364296 | Msa0265950:intron | 25.0% |
! | TAGAATTATCTATAACCAAG+TGG | - | chr2_2:66364393-66364412 | None:intergenic | 25.0% |
!! | CTATTAAGACATGATTTTTG+GGG | + | chr2_2:66364494-66364513 | Msa0265950:intron | 25.0% |
! | CTCTTAACACATCATTAAAT+TGG | + | chr2_2:66364575-66364594 | Msa0265950:intron | 25.0% |
! | CATTCACATAAATTAACGTA+TGG | - | chr2_2:66364717-66364736 | None:intergenic | 25.0% |
! | ATCTTCATTATGTACATCAA+GGG | - | chr2_2:66365150-66365169 | None:intergenic | 25.0% |
! | AAGATGGAGATAAATTAGTA+GGG | + | chr2_2:66365165-66365184 | Msa0265950:intron | 25.0% |
!!! | AATTAAGTTGAGTGTAATTG+AGG | + | chr2_2:66365241-66365260 | Msa0265950:intron | 25.0% |
!!! | ATTAAGTTGAGTGTAATTGA+GGG | + | chr2_2:66365242-66365261 | Msa0265950:intron | 25.0% |
! | TAGATCCAATTTAAGCATTT+AGG | + | chr2_2:66365302-66365321 | Msa0265950:intron | 25.0% |
! | AGATCCAATTTAAGCATTTA+GGG | + | chr2_2:66365303-66365322 | Msa0265950:intron | 25.0% |
! | TAGATTTCATCACCAAATAT+GGG | - | chr2_2:66365329-66365348 | None:intergenic | 25.0% |
! | ATAGATTTCATCACCAAATA+TGG | - | chr2_2:66365330-66365349 | None:intergenic | 25.0% |
!!! | TATTTGGTGATGAAATCTAT+TGG | + | chr2_2:66365330-66365349 | Msa0265950:intron | 25.0% |
!!! | TCATTTTGTTTCTTCAATGT+TGG | + | chr2_2:66365508-66365527 | Msa0265950:intron | 25.0% |
!!! | GTTTTAAGACTCAAAATGTA+AGG | - | chr2_2:66365621-66365640 | None:intergenic | 25.0% |
!!! | TGTTATGAAGATTTGTTTTG+GGG | + | chr2_2:66365874-66365893 | Msa0265950:intron | 25.0% |
!! | ACACTACTAGTTTGATTAAT+TGG | + | chr2_2:66365901-66365920 | Msa0265950:intron | 25.0% |
!! | ACTAGTTTGATTAATTGGTT+AGG | + | chr2_2:66365906-66365925 | Msa0265950:intron | 25.0% |
! | CTAGTTTGATTAATTGGTTA+GGG | + | chr2_2:66365907-66365926 | Msa0265950:intron | 25.0% |
! | GAAAATTTAACATCAACATG+TGG | - | chr2_2:66366183-66366202 | None:intergenic | 25.0% |
ATCAATAATCCATACCCTTT+CGG | - | chr2_2:66364247-66364266 | None:intergenic | 30.0% | |
CTCAAATGGTTAATAAGCTT+CGG | - | chr2_2:66364366-66364385 | None:intergenic | 30.0% | |
GAACCTCAATGTACATATAA+TGG | - | chr2_2:66364520-66364539 | None:intergenic | 30.0% | |
TTAAAACCAATCATGAAGCA+TGG | - | chr2_2:66364676-66364695 | None:intergenic | 30.0% | |
GTGTTTGTTTGCTTCAAAAA+AGG | - | chr2_2:66364766-66364785 | None:intergenic | 30.0% | |
GTGTTGGAAGAAACTTAATT+AGG | - | chr2_2:66364931-66364950 | None:intergenic | 30.0% | |
AATCTAGGTAGATTCTAACT+TGG | - | chr2_2:66365080-66365099 | None:intergenic | 30.0% | |
TCTTCATTATGTACATCAAG+GGG | - | chr2_2:66365149-66365168 | None:intergenic | 30.0% | |
CATCTTCATTATGTACATCA+AGG | - | chr2_2:66365151-66365170 | None:intergenic | 30.0% | |
CTTGATGTACATAATGAAGA+TGG | + | chr2_2:66365149-66365168 | Msa0265950:intron | 30.0% | |
GAAGATGGAGATAAATTAGT+AGG | + | chr2_2:66365164-66365183 | Msa0265950:intron | 30.0% | |
TTGCACTTCTTCAACAATTA+TGG | + | chr2_2:66365188-66365207 | Msa0265950:intron | 30.0% | |
TGCACTTCTTCAACAATTAT+GGG | + | chr2_2:66365189-66365208 | Msa0265950:intron | 30.0% | |
!! | TTTTGTTTCTTCAATGTTGG+TGG | + | chr2_2:66365511-66365530 | Msa0265950:intron | 30.0% |
!!! | GTTATGAAGATTTGTTTTGG+GGG | + | chr2_2:66365875-66365894 | Msa0265950:intron | 30.0% |
!!! | TTCTTGCTTTTATTTTTGGC+AGG | + | chr2_2:66366141-66366160 | Msa0265950:intron | 30.0% |
ATCAATAATCCATACCCTTT+CGG | - | chr2_2:66364247-66364266 | None:intergenic | 30.0% | |
CTCAAATGGTTAATAAGCTT+CGG | - | chr2_2:66364366-66364385 | None:intergenic | 30.0% | |
GAACCTCAATGTACATATAA+TGG | - | chr2_2:66364520-66364539 | None:intergenic | 30.0% | |
TTAAAACCAATCATGAAGCA+TGG | - | chr2_2:66364676-66364695 | None:intergenic | 30.0% | |
GTGTTTGTTTGCTTCAAAAA+AGG | - | chr2_2:66364766-66364785 | None:intergenic | 30.0% | |
GTGTTGGAAGAAACTTAATT+AGG | - | chr2_2:66364931-66364950 | None:intergenic | 30.0% | |
AATCTAGGTAGATTCTAACT+TGG | - | chr2_2:66365080-66365099 | None:intergenic | 30.0% | |
TCTTCATTATGTACATCAAG+GGG | - | chr2_2:66365149-66365168 | None:intergenic | 30.0% | |
CATCTTCATTATGTACATCA+AGG | - | chr2_2:66365151-66365170 | None:intergenic | 30.0% | |
CTTGATGTACATAATGAAGA+TGG | + | chr2_2:66365149-66365168 | Msa0265950:intron | 30.0% | |
GAAGATGGAGATAAATTAGT+AGG | + | chr2_2:66365164-66365183 | Msa0265950:intron | 30.0% | |
TTGCACTTCTTCAACAATTA+TGG | + | chr2_2:66365188-66365207 | Msa0265950:intron | 30.0% | |
TGCACTTCTTCAACAATTAT+GGG | + | chr2_2:66365189-66365208 | Msa0265950:intron | 30.0% | |
!! | TTTTGTTTCTTCAATGTTGG+TGG | + | chr2_2:66365511-66365530 | Msa0265950:intron | 30.0% |
!!! | GTTATGAAGATTTGTTTTGG+GGG | + | chr2_2:66365875-66365894 | Msa0265950:intron | 30.0% |
!!! | TTCTTGCTTTTATTTTTGGC+AGG | + | chr2_2:66366141-66366160 | Msa0265950:intron | 30.0% |
TACTTGCCTCATAAGAACTA+AGG | - | chr2_2:66364286-66364305 | None:intergenic | 35.0% | |
TGGTTAATAAGCTTCGGTTA+AGG | - | chr2_2:66364360-66364379 | None:intergenic | 35.0% | |
! | CACATCATTAAATTGGCTTC+AGG | + | chr2_2:66364582-66364601 | Msa0265950:intron | 35.0% |
! | TAAATTGGCTTCAGGTTAGA+AGG | + | chr2_2:66364590-66364609 | Msa0265950:intron | 35.0% |
CTAAAATTAGTGAGCGTATG+AGG | + | chr2_2:66364614-66364633 | Msa0265950:exon | 35.0% | |
ATGGTACCTTATCCATGTTT+GGG | - | chr2_2:66364657-66364676 | None:intergenic | 35.0% | |
AACAAACACAGCAGATATGT+TGG | + | chr2_2:66364777-66364796 | Msa0265950:CDS | 35.0% | |
TGAAGCTTCTATACAAGTGT+TGG | - | chr2_2:66364947-66364966 | None:intergenic | 35.0% | |
AGCAGCAACAACAACAATAA+CGG | + | chr2_2:66364999-66365018 | Msa0265950:intron | 35.0% | |
GGGGTGAATGAATTTATCTT+TGG | - | chr2_2:66365130-66365149 | None:intergenic | 35.0% | |
AACAATTATGGGAACTAGCT+AGG | + | chr2_2:66365200-66365219 | Msa0265950:intron | 35.0% | |
ACAATTATGGGAACTAGCTA+GGG | + | chr2_2:66365201-66365220 | Msa0265950:intron | 35.0% | |
GTATGTACAAAAAGTCCATG+TGG | + | chr2_2:66365275-66365294 | Msa0265950:intron | 35.0% | |
AATTGGATCTACTTACCACA+TGG | - | chr2_2:66365293-66365312 | None:intergenic | 35.0% | |
CGTTTACGTTTCACATTGAA+TGG | + | chr2_2:66365379-66365398 | Msa0265950:intron | 35.0% | |
TACGTTTCACATTGAATGGT+TGG | + | chr2_2:66365383-66365402 | Msa0265950:intron | 35.0% | |
! | ACAAAAATATGTCGGTGTCT+CGG | - | chr2_2:66365433-66365452 | None:intergenic | 35.0% |
!! | AGACACCGACATATTTTTGT+TGG | + | chr2_2:66365433-66365452 | Msa0265950:intron | 35.0% |
!! | TATGTATGACGGATGAAGAT+GGG | - | chr2_2:66366031-66366050 | None:intergenic | 35.0% |
!! | TTATGTATGACGGATGAAGA+TGG | - | chr2_2:66366032-66366051 | None:intergenic | 35.0% |
ATTTAACATCAACATGTGGC+AGG | - | chr2_2:66366179-66366198 | None:intergenic | 35.0% | |
!!! | TCCTAGCTTTGCCAAATTTT+AGG | + | chr2_2:66366227-66366246 | Msa0265950:CDS | 35.0% |
!! | TAGCTTTGCCAAATTTTAGG+CGG | + | chr2_2:66366230-66366249 | Msa0265950:CDS | 35.0% |
TACTTGCCTCATAAGAACTA+AGG | - | chr2_2:66364286-66364305 | None:intergenic | 35.0% | |
TGGTTAATAAGCTTCGGTTA+AGG | - | chr2_2:66364360-66364379 | None:intergenic | 35.0% | |
! | CACATCATTAAATTGGCTTC+AGG | + | chr2_2:66364582-66364601 | Msa0265950:intron | 35.0% |
! | TAAATTGGCTTCAGGTTAGA+AGG | + | chr2_2:66364590-66364609 | Msa0265950:intron | 35.0% |
CTAAAATTAGTGAGCGTATG+AGG | + | chr2_2:66364614-66364633 | Msa0265950:exon | 35.0% | |
ATGGTACCTTATCCATGTTT+GGG | - | chr2_2:66364657-66364676 | None:intergenic | 35.0% | |
AACAAACACAGCAGATATGT+TGG | + | chr2_2:66364777-66364796 | Msa0265950:CDS | 35.0% | |
TGAAGCTTCTATACAAGTGT+TGG | - | chr2_2:66364947-66364966 | None:intergenic | 35.0% | |
AGCAGCAACAACAACAATAA+CGG | + | chr2_2:66364999-66365018 | Msa0265950:intron | 35.0% | |
GGGGTGAATGAATTTATCTT+TGG | - | chr2_2:66365130-66365149 | None:intergenic | 35.0% | |
AACAATTATGGGAACTAGCT+AGG | + | chr2_2:66365200-66365219 | Msa0265950:intron | 35.0% | |
ACAATTATGGGAACTAGCTA+GGG | + | chr2_2:66365201-66365220 | Msa0265950:intron | 35.0% | |
GTATGTACAAAAAGTCCATG+TGG | + | chr2_2:66365275-66365294 | Msa0265950:intron | 35.0% | |
AATTGGATCTACTTACCACA+TGG | - | chr2_2:66365293-66365312 | None:intergenic | 35.0% | |
CGTTTACGTTTCACATTGAA+TGG | + | chr2_2:66365379-66365398 | Msa0265950:intron | 35.0% | |
TACGTTTCACATTGAATGGT+TGG | + | chr2_2:66365383-66365402 | Msa0265950:intron | 35.0% | |
! | ACAAAAATATGTCGGTGTCT+CGG | - | chr2_2:66365433-66365452 | None:intergenic | 35.0% |
!! | AGACACCGACATATTTTTGT+TGG | + | chr2_2:66365433-66365452 | Msa0265950:intron | 35.0% |
!! | TATGTATGACGGATGAAGAT+GGG | - | chr2_2:66366031-66366050 | None:intergenic | 35.0% |
!! | TTATGTATGACGGATGAAGA+TGG | - | chr2_2:66366032-66366051 | None:intergenic | 35.0% |
ATTTAACATCAACATGTGGC+AGG | - | chr2_2:66366179-66366198 | None:intergenic | 35.0% | |
!!! | TCCTAGCTTTGCCAAATTTT+AGG | + | chr2_2:66366227-66366246 | Msa0265950:CDS | 35.0% |
!! | TAGCTTTGCCAAATTTTAGG+CGG | + | chr2_2:66366230-66366249 | Msa0265950:CDS | 35.0% |
AACCATTTGAGCAAACCACT+TGG | + | chr2_2:66364375-66364394 | Msa0265950:intron | 40.0% | |
!! | AACCAAGTGGTTTGCTCAAA+TGG | - | chr2_2:66364380-66364399 | None:intergenic | 40.0% |
GGGCCATTATATGTACATTG+AGG | + | chr2_2:66364514-66364533 | Msa0265950:intron | 40.0% | |
TATGAGGAAGCTACAAGATC+TGG | + | chr2_2:66364630-66364649 | Msa0265950:exon | 40.0% | |
CATGGTACCTTATCCATGTT+TGG | - | chr2_2:66364658-66364677 | None:intergenic | 40.0% | |
! | AAGGTACCATGCTTCATGAT+TGG | + | chr2_2:66364667-66364686 | Msa0265950:intron | 40.0% |
!! | ATACCTGAGCTTGCTTTTGA+AGG | - | chr2_2:66364828-66364847 | None:intergenic | 40.0% |
AACTAGCTAGGGAAGAAAAG+TGG | + | chr2_2:66365212-66365231 | Msa0265950:intron | 40.0% | |
ACTAGCTAGGGAAGAAAAGT+GGG | + | chr2_2:66365213-66365232 | Msa0265950:intron | 40.0% | |
TGGGCCCTAAATGCTTAAAT+TGG | - | chr2_2:66365310-66365329 | None:intergenic | 40.0% | |
! | AAGCATTTAGGGCCCATATT+TGG | + | chr2_2:66365314-66365333 | Msa0265950:intron | 40.0% |
! | GTTGGCGTTGGATTATAACA+TGG | + | chr2_2:66365401-66365420 | Msa0265950:intron | 40.0% |
GCGTTGGATTATAACATGGT+GGG | + | chr2_2:66365405-66365424 | Msa0265950:intron | 40.0% | |
!! | TCTTCAATGTTGGTGGTGTT+TGG | + | chr2_2:66365518-66365537 | Msa0265950:intron | 40.0% |
! | ATTTCTAAAAATGCGGACCG+TGG | + | chr2_2:66366051-66366070 | Msa0265950:intron | 40.0% |
! | TTTCTAAAAATGCGGACCGT+GGG | + | chr2_2:66366052-66366071 | Msa0265950:intron | 40.0% |
GCCTAAAATTTGGCAAAGCT+AGG | - | chr2_2:66366231-66366250 | None:intergenic | 40.0% | |
CCACTAATCCGCCTAAAATT+TGG | - | chr2_2:66366241-66366260 | None:intergenic | 40.0% | |
!!! | CCAAATTTTAGGCGGATTAG+TGG | + | chr2_2:66366238-66366257 | Msa0265950:CDS | 40.0% |
!!! | AATTTTAGGCGGATTAGTGG+TGG | + | chr2_2:66366241-66366260 | Msa0265950:CDS | 40.0% |
AACCATTTGAGCAAACCACT+TGG | + | chr2_2:66364375-66364394 | Msa0265950:intron | 40.0% | |
!! | AACCAAGTGGTTTGCTCAAA+TGG | - | chr2_2:66364380-66364399 | None:intergenic | 40.0% |
GGGCCATTATATGTACATTG+AGG | + | chr2_2:66364514-66364533 | Msa0265950:intron | 40.0% | |
TATGAGGAAGCTACAAGATC+TGG | + | chr2_2:66364630-66364649 | Msa0265950:exon | 40.0% | |
CATGGTACCTTATCCATGTT+TGG | - | chr2_2:66364658-66364677 | None:intergenic | 40.0% | |
! | AAGGTACCATGCTTCATGAT+TGG | + | chr2_2:66364667-66364686 | Msa0265950:intron | 40.0% |
!! | ATACCTGAGCTTGCTTTTGA+AGG | - | chr2_2:66364828-66364847 | None:intergenic | 40.0% |
AACTAGCTAGGGAAGAAAAG+TGG | + | chr2_2:66365212-66365231 | Msa0265950:intron | 40.0% | |
ACTAGCTAGGGAAGAAAAGT+GGG | + | chr2_2:66365213-66365232 | Msa0265950:intron | 40.0% | |
TGGGCCCTAAATGCTTAAAT+TGG | - | chr2_2:66365310-66365329 | None:intergenic | 40.0% | |
! | AAGCATTTAGGGCCCATATT+TGG | + | chr2_2:66365314-66365333 | Msa0265950:intron | 40.0% |
! | GTTGGCGTTGGATTATAACA+TGG | + | chr2_2:66365401-66365420 | Msa0265950:intron | 40.0% |
GCGTTGGATTATAACATGGT+GGG | + | chr2_2:66365405-66365424 | Msa0265950:intron | 40.0% | |
!! | TCTTCAATGTTGGTGGTGTT+TGG | + | chr2_2:66365518-66365537 | Msa0265950:intron | 40.0% |
! | ATTTCTAAAAATGCGGACCG+TGG | + | chr2_2:66366051-66366070 | Msa0265950:intron | 40.0% |
! | TTTCTAAAAATGCGGACCGT+GGG | + | chr2_2:66366052-66366071 | Msa0265950:intron | 40.0% |
GCCTAAAATTTGGCAAAGCT+AGG | - | chr2_2:66366231-66366250 | None:intergenic | 40.0% | |
CCACTAATCCGCCTAAAATT+TGG | - | chr2_2:66366241-66366260 | None:intergenic | 40.0% | |
!!! | CCAAATTTTAGGCGGATTAG+TGG | + | chr2_2:66366238-66366257 | Msa0265950:CDS | 40.0% |
!!! | AATTTTAGGCGGATTAGTGG+TGG | + | chr2_2:66366241-66366260 | Msa0265950:CDS | 40.0% |
ACAAGATCTGGTCCCAAACA+TGG | + | chr2_2:66364642-66364661 | Msa0265950:CDS | 45.0% | |
TCTGGTCCCAAACATGGATA+AGG | + | chr2_2:66364648-66364667 | Msa0265950:CDS | 45.0% | |
CACAGCAGATATGTTGGACT+TGG | + | chr2_2:66364783-66364802 | Msa0265950:CDS | 45.0% | |
AGATATGTTGGACTTGGCTG+TGG | + | chr2_2:66364789-66364808 | Msa0265950:CDS | 45.0% | |
AGACCTTCAAAAGCAAGCTC+AGG | + | chr2_2:66364822-66364841 | Msa0265950:CDS | 45.0% | |
! | GTTGTTGTTGCTGCTTGTGT+GGG | - | chr2_2:66364994-66365013 | None:intergenic | 45.0% |
! | TGTTGTTGTTGCTGCTTGTG+TGG | - | chr2_2:66364995-66365014 | None:intergenic | 45.0% |
TCACATTGAATGGTTGGCGT+TGG | + | chr2_2:66365389-66365408 | Msa0265950:intron | 45.0% | |
! | GGCGTTGGATTATAACATGG+TGG | + | chr2_2:66365404-66365423 | Msa0265950:intron | 45.0% |
TGGTGTTTGGTAAAGCCAAC+TGG | + | chr2_2:66365531-66365550 | Msa0265950:intron | 45.0% | |
TGTTTGGTAAAGCCAACTGG+TGG | + | chr2_2:66365534-66365553 | Msa0265950:intron | 45.0% | |
TGCAAATGAGAACCACCAGT+TGG | - | chr2_2:66365549-66365568 | None:intergenic | 45.0% | |
! | AAGGGACGCACATTTGTTAG+AGG | + | chr2_2:66365697-66365716 | Msa0265950:intron | 45.0% |
!! | CATCACATCGACTTTGTGCT+AGG | - | chr2_2:66365797-66365816 | None:intergenic | 45.0% |
CTAGCACAAAGTCGATGTGA+TGG | + | chr2_2:66365795-66365814 | Msa0265950:intron | 45.0% | |
!! | ACGGATGAAGATGGGTTGAA+GGG | - | chr2_2:66366023-66366042 | None:intergenic | 45.0% |
ACAAGATCTGGTCCCAAACA+TGG | + | chr2_2:66364642-66364661 | Msa0265950:CDS | 45.0% | |
TCTGGTCCCAAACATGGATA+AGG | + | chr2_2:66364648-66364667 | Msa0265950:CDS | 45.0% | |
CACAGCAGATATGTTGGACT+TGG | + | chr2_2:66364783-66364802 | Msa0265950:CDS | 45.0% | |
AGATATGTTGGACTTGGCTG+TGG | + | chr2_2:66364789-66364808 | Msa0265950:CDS | 45.0% | |
AGACCTTCAAAAGCAAGCTC+AGG | + | chr2_2:66364822-66364841 | Msa0265950:CDS | 45.0% | |
! | GTTGTTGTTGCTGCTTGTGT+GGG | - | chr2_2:66364994-66365013 | None:intergenic | 45.0% |
! | TGTTGTTGTTGCTGCTTGTG+TGG | - | chr2_2:66364995-66365014 | None:intergenic | 45.0% |
TCACATTGAATGGTTGGCGT+TGG | + | chr2_2:66365389-66365408 | Msa0265950:intron | 45.0% | |
! | GGCGTTGGATTATAACATGG+TGG | + | chr2_2:66365404-66365423 | Msa0265950:intron | 45.0% |
TGGTGTTTGGTAAAGCCAAC+TGG | + | chr2_2:66365531-66365550 | Msa0265950:intron | 45.0% | |
TGTTTGGTAAAGCCAACTGG+TGG | + | chr2_2:66365534-66365553 | Msa0265950:intron | 45.0% | |
TGCAAATGAGAACCACCAGT+TGG | - | chr2_2:66365549-66365568 | None:intergenic | 45.0% | |
! | AAGGGACGCACATTTGTTAG+AGG | + | chr2_2:66365697-66365716 | Msa0265950:intron | 45.0% |
!! | CATCACATCGACTTTGTGCT+AGG | - | chr2_2:66365797-66365816 | None:intergenic | 45.0% |
CTAGCACAAAGTCGATGTGA+TGG | + | chr2_2:66365795-66365814 | Msa0265950:intron | 45.0% | |
!! | ACGGATGAAGATGGGTTGAA+GGG | - | chr2_2:66366023-66366042 | None:intergenic | 45.0% |
!! | ATCAAAAAAATATATATATA+GGG | - | chr2_2:66365977-66365996 | None:intergenic | 5.0% |
!! | ATCAAAAAAATATATATATA+GGG | - | chr2_2:66365977-66365996 | None:intergenic | 5.0% |
TTCGGCAATGCTTCTTGGGT+GGG | - | chr2_2:66364229-66364248 | None:intergenic | 50.0% | |
TTTCGGCAATGCTTCTTGGG+TGG | - | chr2_2:66364230-66364249 | None:intergenic | 50.0% | |
!! | ACCCAAGAAGCATTGCCGAA+AGG | + | chr2_2:66364229-66364248 | Msa0265950:five_prime_UTR | 50.0% |
CCCTTTCGGCAATGCTTCTT+GGG | - | chr2_2:66364233-66364252 | None:intergenic | 50.0% | |
!! | CCCAAGAAGCATTGCCGAAA+GGG | + | chr2_2:66364230-66364249 | Msa0265950:five_prime_UTR | 50.0% |
ACCCTTTCGGCAATGCTTCT+TGG | - | chr2_2:66364234-66364253 | None:intergenic | 50.0% | |
!! | GAAGCATTGCCGAAAGGGTA+TGG | + | chr2_2:66364235-66364254 | Msa0265950:intron | 50.0% |
!! | GACGGATGAAGATGGGTTGA+AGG | - | chr2_2:66366024-66366043 | None:intergenic | 50.0% |
CTGATGAACCAATCTGCCCA+CGG | - | chr2_2:66366071-66366090 | None:intergenic | 50.0% | |
CATGTGGCAGGTCGACAAAT+CGG | - | chr2_2:66366167-66366186 | None:intergenic | 50.0% | |
!! | AGGCGGATTAGTGGTGGTAA+TGG | + | chr2_2:66366247-66366266 | Msa0265950:CDS | 50.0% |
!! | GGCGGATTAGTGGTGGTAAT+GGG | + | chr2_2:66366248-66366267 | Msa0265950:CDS | 50.0% |
!! | GCGGATTAGTGGTGGTAATG+GGG | + | chr2_2:66366249-66366268 | Msa0265950:CDS | 50.0% |
TTCGGCAATGCTTCTTGGGT+GGG | - | chr2_2:66364229-66364248 | None:intergenic | 50.0% | |
TTTCGGCAATGCTTCTTGGG+TGG | - | chr2_2:66364230-66364249 | None:intergenic | 50.0% | |
!! | ACCCAAGAAGCATTGCCGAA+AGG | + | chr2_2:66364229-66364248 | Msa0265950:five_prime_UTR | 50.0% |
CCCTTTCGGCAATGCTTCTT+GGG | - | chr2_2:66364233-66364252 | None:intergenic | 50.0% | |
!! | CCCAAGAAGCATTGCCGAAA+GGG | + | chr2_2:66364230-66364249 | Msa0265950:five_prime_UTR | 50.0% |
ACCCTTTCGGCAATGCTTCT+TGG | - | chr2_2:66364234-66364253 | None:intergenic | 50.0% | |
!! | GAAGCATTGCCGAAAGGGTA+TGG | + | chr2_2:66364235-66364254 | Msa0265950:intron | 50.0% |
!! | GACGGATGAAGATGGGTTGA+AGG | - | chr2_2:66366024-66366043 | None:intergenic | 50.0% |
CTGATGAACCAATCTGCCCA+CGG | - | chr2_2:66366071-66366090 | None:intergenic | 50.0% | |
CATGTGGCAGGTCGACAAAT+CGG | - | chr2_2:66366167-66366186 | None:intergenic | 50.0% | |
!! | AGGCGGATTAGTGGTGGTAA+TGG | + | chr2_2:66366247-66366266 | Msa0265950:CDS | 50.0% |
!! | GGCGGATTAGTGGTGGTAAT+GGG | + | chr2_2:66366248-66366267 | Msa0265950:CDS | 50.0% |
!! | GCGGATTAGTGGTGGTAATG+GGG | + | chr2_2:66366249-66366268 | Msa0265950:CDS | 50.0% |
GGCAATGCTTCTTGGGTGGG+TGG | - | chr2_2:66364226-66364245 | None:intergenic | 60.0% | |
AATGCGGACCGTGGGCAGAT+TGG | + | chr2_2:66366060-66366079 | Msa0265950:intron | 60.0% | |
GGCAATGCTTCTTGGGTGGG+TGG | - | chr2_2:66364226-66364245 | None:intergenic | 60.0% | |
AATGCGGACCGTGGGCAGAT+TGG | + | chr2_2:66366060-66366079 | Msa0265950:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 66364210 | 66366276 | 66364210 | ID=Msa0265950;Name=Msa0265950 |
chr2_2 | mRNA | 66364210 | 66366276 | 66364210 | ID=Msa0265950-mRNA-1;Parent=Msa0265950;Name=Msa0265950-mRNA-1;_AED=0.59;_eAED=0.59;_QI=69|0.66|0.75|0.75|0.66|0.5|4|0|73 |
chr2_2 | exon | 66364210 | 66364251 | 66364210 | ID=Msa0265950-mRNA-1:exon:20996;Parent=Msa0265950-mRNA-1 |
chr2_2 | exon | 66364604 | 66364669 | 66364604 | ID=Msa0265950-mRNA-1:exon:20997;Parent=Msa0265950-mRNA-1 |
chr2_2 | exon | 66364775 | 66364843 | 66364775 | ID=Msa0265950-mRNA-1:exon:20998;Parent=Msa0265950-mRNA-1 |
chr2_2 | exon | 66366163 | 66366276 | 66366163 | ID=Msa0265950-mRNA-1:exon:20999;Parent=Msa0265950-mRNA-1 |
chr2_2 | five_prime_UTR | 66364210 | 66364251 | 66364210 | ID=Msa0265950-mRNA-1:five_prime_utr;Parent=Msa0265950-mRNA-1 |
chr2_2 | five_prime_UTR | 66364604 | 66364630 | 66364604 | ID=Msa0265950-mRNA-1:five_prime_utr;Parent=Msa0265950-mRNA-1 |
chr2_2 | CDS | 66364631 | 66364669 | 66364631 | ID=Msa0265950-mRNA-1:cds;Parent=Msa0265950-mRNA-1 |
chr2_2 | CDS | 66364775 | 66364843 | 66364775 | ID=Msa0265950-mRNA-1:cds;Parent=Msa0265950-mRNA-1 |
chr2_2 | CDS | 66366163 | 66366276 | 66366163 | ID=Msa0265950-mRNA-1:cds;Parent=Msa0265950-mRNA-1 |
Gene Sequence |
Protein sequence |