AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265950 MtrunA17_Chr2g0329041 100.000 36 0 0 1 36 358 393 9.14e-18 75.5
Msa0265950 MtrunA17_Chr1g0174271 83.784 37 6 0 1 37 324 360 1.87e-15 68.9
Msa0265950 MtrunA17_Chr4g0032951 86.111 36 5 0 1 36 381 416 3.19e-15 68.2
Msa0265950 MtrunA17_Chr7g0258181 79.412 34 7 0 1 34 269 302 2.56e-12 59.7
Msa0265950 MtrunA17_Chr1g0213791 64.444 45 13 1 1 42 291 335 3.17e-12 59.7
Msa0265950 MtrunA17_Chr3g0087771 66.667 42 13 1 1 42 348 388 1.44e-11 57.8
Msa0265950 MtrunA17_Chr8g0351881 73.529 34 9 0 1 34 342 375 3.71e-11 56.6
Msa0265950 MtrunA17_Chr4g0014771 72.222 36 10 0 1 36 144 179 4.53e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265950 AT1G51140.1 86.486 37 5 0 1 37 330 366 5.24e-16 70.9
Msa0265950 AT2G42280.1 91.176 34 3 0 1 34 305 338 5.12e-15 67.8
Msa0265950 AT2G42280.3 91.176 34 3 0 1 34 305 338 5.45e-15 67.8
Msa0265950 AT4G09180.1 75.000 36 9 0 1 36 210 245 1.31e-12 60.8
Msa0265950 AT1G35460.1 72.222 36 10 0 1 36 207 242 2.86e-12 59.7
Msa0265950 AT2G43140.2 67.568 37 12 0 1 37 257 293 1.89e-11 57.8
Msa0265950 AT1G05805.1 72.222 36 10 0 1 36 309 344 2.19e-11 57.8
Msa0265950 AT2G43140.1 67.568 37 12 0 1 37 160 196 2.91e-11 56.6

Find 27 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTTCGGCAATGCTTCT+TGG 0.230259 2_2:-66364231 None:intergenic
CCACTAATCCGCCTAAAATT+TGG 0.247738 2_2:-66366238 None:intergenic
CCCTTTCGGCAATGCTTCTT+GGG 0.290663 2_2:-66364230 None:intergenic
GGCGGATTAGTGGTGGTAAT+GGG 0.307921 2_2:+66366248 Msa0265950:CDS
CATGGTACCTTATCCATGTT+TGG 0.320678 2_2:-66364655 None:intergenic
TAAATTGGCTTCAGGTTAGA+AGG 0.325551 2_2:+66364590 Msa0265950:intron
ATCAATAATCCATACCCTTT+CGG 0.345815 2_2:-66364244 None:intergenic
CCCAAGAAGCATTGCCGAAA+GGG 0.390620 2_2:+66364230 Msa0265950:five_prime_UTR
TTCGGCAATGCTTCTTGGGT+GGG 0.408101 2_2:-66364226 None:intergenic
AGGCGGATTAGTGGTGGTAA+TGG 0.425696 2_2:+66366247 Msa0265950:CDS
CTAAAATTAGTGAGCGTATG+AGG 0.443405 2_2:+66364614 Msa0265950:exon
ATGGTACCTTATCCATGTTT+GGG 0.462347 2_2:-66364654 None:intergenic
TATGAGGAAGCTACAAGATC+TGG 0.475457 2_2:+66364630 Msa0265950:exon
TTTCGGCAATGCTTCTTGGG+TGG 0.478638 2_2:-66364227 None:intergenic
TCTGGTCCCAAACATGGATA+AGG 0.497918 2_2:+66364648 Msa0265950:CDS
CATGTGGCAGGTCGACAAAT+CGG 0.503283 2_2:-66366164 None:intergenic
GGCAATGCTTCTTGGGTGGG+TGG 0.511007 2_2:-66364223 None:intergenic
CACAGCAGATATGTTGGACT+TGG 0.518004 2_2:+66364783 Msa0265950:CDS
AACAAACACAGCAGATATGT+TGG 0.533839 2_2:+66364777 Msa0265950:CDS
ATTTAACATCAACATGTGGC+AGG 0.548466 2_2:-66366176 None:intergenic
AGATATGTTGGACTTGGCTG+TGG 0.548724 2_2:+66364789 Msa0265950:CDS
AGACCTTCAAAAGCAAGCTC+AGG 0.554514 2_2:+66364822 Msa0265950:CDS
ACAAGATCTGGTCCCAAACA+TGG 0.576424 2_2:+66364642 Msa0265950:CDS
GCCTAAAATTTGGCAAAGCT+AGG 0.577899 2_2:-66366228 None:intergenic
ACCCAAGAAGCATTGCCGAA+AGG 0.582792 2_2:+66364229 Msa0265950:five_prime_UTR
GCGGATTAGTGGTGGTAATG+GGG 0.583889 2_2:+66366249 Msa0265950:CDS
GAAAATTTAACATCAACATG+TGG 0.628954 2_2:-66366180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAAAATATATATATAG+GGG - chr2_2:66365976-66365995 None:intergenic 10.0%
!! CATCAAAAAAATATATATAT+AGG - chr2_2:66365978-66365997 None:intergenic 10.0%
!! TCAAAAAAATATATATATAG+GGG - chr2_2:66365976-66365995 None:intergenic 10.0%
!! CATCAAAAAAATATATATAT+AGG - chr2_2:66365978-66365997 None:intergenic 10.0%
!! AACAAAAGAAAAGTAATATA+GGG - chr2_2:66364430-66364449 None:intergenic 15.0%
!! AAACAAAAGAAAAGTAATAT+AGG - chr2_2:66364431-66364450 None:intergenic 15.0%
!!! ATATTACTTTTCTTTTGTTT+AGG + chr2_2:66364431-66364450 Msa0265950:intron 15.0%
!! CTAAAACTAAATATGTAAAT+TGG - chr2_2:66364467-66364486 None:intergenic 15.0%
!! AATGAAAAGAGTAATATAAA+CGG - chr2_2:66365493-66365512 None:intergenic 15.0%
!!! TTAACACTTACTTTTTATAT+TGG + chr2_2:66365753-66365772 Msa0265950:intron 15.0%
!! TATGATGTAATATGATTTAA+GGG + chr2_2:66365818-66365837 Msa0265950:intron 15.0%
!!! TTTTTAGAAATTATGTATGA+CGG - chr2_2:66366042-66366061 None:intergenic 15.0%
!!! ATACATAATTTCTAAAAATG+CGG + chr2_2:66366044-66366063 Msa0265950:intron 15.0%
!! ACATGTAAAATAAGAAAAAT+AGG - chr2_2:66366208-66366227 None:intergenic 15.0%
!! AACAAAAGAAAAGTAATATA+GGG - chr2_2:66364430-66364449 None:intergenic 15.0%
!! AAACAAAAGAAAAGTAATAT+AGG - chr2_2:66364431-66364450 None:intergenic 15.0%
!!! ATATTACTTTTCTTTTGTTT+AGG + chr2_2:66364431-66364450 Msa0265950:intron 15.0%
!! CTAAAACTAAATATGTAAAT+TGG - chr2_2:66364467-66364486 None:intergenic 15.0%
!! AATGAAAAGAGTAATATAAA+CGG - chr2_2:66365493-66365512 None:intergenic 15.0%
!!! TTAACACTTACTTTTTATAT+TGG + chr2_2:66365753-66365772 Msa0265950:intron 15.0%
!! TATGATGTAATATGATTTAA+GGG + chr2_2:66365818-66365837 Msa0265950:intron 15.0%
!!! TTTTTAGAAATTATGTATGA+CGG - chr2_2:66366042-66366061 None:intergenic 15.0%
!!! ATACATAATTTCTAAAAATG+CGG + chr2_2:66366044-66366063 Msa0265950:intron 15.0%
!! ACATGTAAAATAAGAAAAAT+AGG - chr2_2:66366208-66366227 None:intergenic 15.0%
!!! TACTATTAAGACATGATTTT+TGG + chr2_2:66364492-66364511 Msa0265950:intron 20.0%
!!! ACTATTAAGACATGATTTTT+GGG + chr2_2:66364493-66364512 Msa0265950:intron 20.0%
!! AATTATTACAAATCTGTACA+TGG - chr2_2:66365049-66365068 None:intergenic 20.0%
!! TGTACAGATTTGTAATAATT+TGG + chr2_2:66365049-66365068 Msa0265950:intron 20.0%
!! TAACAAATAAAAGCTAATCT+AGG - chr2_2:66365095-66365114 None:intergenic 20.0%
!!! CGTACATATTTGTTATTATA+CGG - chr2_2:66365361-66365380 None:intergenic 20.0%
!! TATAACCAACAAAAATATGT+CGG - chr2_2:66365441-66365460 None:intergenic 20.0%
!! ATATGATGAATTTGTATTTG+AGG + chr2_2:66365463-66365482 Msa0265950:intron 20.0%
!!! ACTTTTATAGTTATTAACGA+AGG + chr2_2:66365678-66365697 Msa0265950:intron 20.0%
!!! CTTTTATAGTTATTAACGAA+GGG + chr2_2:66365679-66365698 Msa0265950:intron 20.0%
!! GTATGATGTAATATGATTTA+AGG + chr2_2:66365817-66365836 Msa0265950:intron 20.0%
!!! TTTGTTATGAAGATTTGTTT+TGG + chr2_2:66365872-66365891 Msa0265950:intron 20.0%
!!! TTGTTATGAAGATTTGTTTT+GGG + chr2_2:66365873-66365892 Msa0265950:intron 20.0%
!!! AGAAACATATATTGATTGTT+AGG - chr2_2:66366125-66366144 None:intergenic 20.0%
!!! ATGTTTCTTGCTTTTATTTT+TGG + chr2_2:66366137-66366156 Msa0265950:intron 20.0%
!!! TACTATTAAGACATGATTTT+TGG + chr2_2:66364492-66364511 Msa0265950:intron 20.0%
!!! ACTATTAAGACATGATTTTT+GGG + chr2_2:66364493-66364512 Msa0265950:intron 20.0%
!! AATTATTACAAATCTGTACA+TGG - chr2_2:66365049-66365068 None:intergenic 20.0%
!! TGTACAGATTTGTAATAATT+TGG + chr2_2:66365049-66365068 Msa0265950:intron 20.0%
!! TAACAAATAAAAGCTAATCT+AGG - chr2_2:66365095-66365114 None:intergenic 20.0%
!!! CGTACATATTTGTTATTATA+CGG - chr2_2:66365361-66365380 None:intergenic 20.0%
!! TATAACCAACAAAAATATGT+CGG - chr2_2:66365441-66365460 None:intergenic 20.0%
!! ATATGATGAATTTGTATTTG+AGG + chr2_2:66365463-66365482 Msa0265950:intron 20.0%
!!! ACTTTTATAGTTATTAACGA+AGG + chr2_2:66365678-66365697 Msa0265950:intron 20.0%
!!! CTTTTATAGTTATTAACGAA+GGG + chr2_2:66365679-66365698 Msa0265950:intron 20.0%
!! GTATGATGTAATATGATTTA+AGG + chr2_2:66365817-66365836 Msa0265950:intron 20.0%
!!! TTTGTTATGAAGATTTGTTT+TGG + chr2_2:66365872-66365891 Msa0265950:intron 20.0%
!!! TTGTTATGAAGATTTGTTTT+GGG + chr2_2:66365873-66365892 Msa0265950:intron 20.0%
!!! AGAAACATATATTGATTGTT+AGG - chr2_2:66366125-66366144 None:intergenic 20.0%
!!! ATGTTTCTTGCTTTTATTTT+TGG + chr2_2:66366137-66366156 Msa0265950:intron 20.0%
!!! TTTTTACCTTAGTTCTTATG+AGG + chr2_2:66364277-66364296 Msa0265950:intron 25.0%
! TAGAATTATCTATAACCAAG+TGG - chr2_2:66364393-66364412 None:intergenic 25.0%
!! CTATTAAGACATGATTTTTG+GGG + chr2_2:66364494-66364513 Msa0265950:intron 25.0%
! CTCTTAACACATCATTAAAT+TGG + chr2_2:66364575-66364594 Msa0265950:intron 25.0%
! CATTCACATAAATTAACGTA+TGG - chr2_2:66364717-66364736 None:intergenic 25.0%
! ATCTTCATTATGTACATCAA+GGG - chr2_2:66365150-66365169 None:intergenic 25.0%
! AAGATGGAGATAAATTAGTA+GGG + chr2_2:66365165-66365184 Msa0265950:intron 25.0%
!!! AATTAAGTTGAGTGTAATTG+AGG + chr2_2:66365241-66365260 Msa0265950:intron 25.0%
!!! ATTAAGTTGAGTGTAATTGA+GGG + chr2_2:66365242-66365261 Msa0265950:intron 25.0%
! TAGATCCAATTTAAGCATTT+AGG + chr2_2:66365302-66365321 Msa0265950:intron 25.0%
! AGATCCAATTTAAGCATTTA+GGG + chr2_2:66365303-66365322 Msa0265950:intron 25.0%
! TAGATTTCATCACCAAATAT+GGG - chr2_2:66365329-66365348 None:intergenic 25.0%
! ATAGATTTCATCACCAAATA+TGG - chr2_2:66365330-66365349 None:intergenic 25.0%
!!! TATTTGGTGATGAAATCTAT+TGG + chr2_2:66365330-66365349 Msa0265950:intron 25.0%
!!! TCATTTTGTTTCTTCAATGT+TGG + chr2_2:66365508-66365527 Msa0265950:intron 25.0%
!!! GTTTTAAGACTCAAAATGTA+AGG - chr2_2:66365621-66365640 None:intergenic 25.0%
!!! TGTTATGAAGATTTGTTTTG+GGG + chr2_2:66365874-66365893 Msa0265950:intron 25.0%
!! ACACTACTAGTTTGATTAAT+TGG + chr2_2:66365901-66365920 Msa0265950:intron 25.0%
!! ACTAGTTTGATTAATTGGTT+AGG + chr2_2:66365906-66365925 Msa0265950:intron 25.0%
! CTAGTTTGATTAATTGGTTA+GGG + chr2_2:66365907-66365926 Msa0265950:intron 25.0%
! GAAAATTTAACATCAACATG+TGG - chr2_2:66366183-66366202 None:intergenic 25.0%
!!! TTTTTACCTTAGTTCTTATG+AGG + chr2_2:66364277-66364296 Msa0265950:intron 25.0%
! TAGAATTATCTATAACCAAG+TGG - chr2_2:66364393-66364412 None:intergenic 25.0%
!! CTATTAAGACATGATTTTTG+GGG + chr2_2:66364494-66364513 Msa0265950:intron 25.0%
! CTCTTAACACATCATTAAAT+TGG + chr2_2:66364575-66364594 Msa0265950:intron 25.0%
! CATTCACATAAATTAACGTA+TGG - chr2_2:66364717-66364736 None:intergenic 25.0%
! ATCTTCATTATGTACATCAA+GGG - chr2_2:66365150-66365169 None:intergenic 25.0%
! AAGATGGAGATAAATTAGTA+GGG + chr2_2:66365165-66365184 Msa0265950:intron 25.0%
!!! AATTAAGTTGAGTGTAATTG+AGG + chr2_2:66365241-66365260 Msa0265950:intron 25.0%
!!! ATTAAGTTGAGTGTAATTGA+GGG + chr2_2:66365242-66365261 Msa0265950:intron 25.0%
! TAGATCCAATTTAAGCATTT+AGG + chr2_2:66365302-66365321 Msa0265950:intron 25.0%
! AGATCCAATTTAAGCATTTA+GGG + chr2_2:66365303-66365322 Msa0265950:intron 25.0%
! TAGATTTCATCACCAAATAT+GGG - chr2_2:66365329-66365348 None:intergenic 25.0%
! ATAGATTTCATCACCAAATA+TGG - chr2_2:66365330-66365349 None:intergenic 25.0%
!!! TATTTGGTGATGAAATCTAT+TGG + chr2_2:66365330-66365349 Msa0265950:intron 25.0%
!!! TCATTTTGTTTCTTCAATGT+TGG + chr2_2:66365508-66365527 Msa0265950:intron 25.0%
!!! GTTTTAAGACTCAAAATGTA+AGG - chr2_2:66365621-66365640 None:intergenic 25.0%
!!! TGTTATGAAGATTTGTTTTG+GGG + chr2_2:66365874-66365893 Msa0265950:intron 25.0%
!! ACACTACTAGTTTGATTAAT+TGG + chr2_2:66365901-66365920 Msa0265950:intron 25.0%
!! ACTAGTTTGATTAATTGGTT+AGG + chr2_2:66365906-66365925 Msa0265950:intron 25.0%
! CTAGTTTGATTAATTGGTTA+GGG + chr2_2:66365907-66365926 Msa0265950:intron 25.0%
! GAAAATTTAACATCAACATG+TGG - chr2_2:66366183-66366202 None:intergenic 25.0%
ATCAATAATCCATACCCTTT+CGG - chr2_2:66364247-66364266 None:intergenic 30.0%
CTCAAATGGTTAATAAGCTT+CGG - chr2_2:66364366-66364385 None:intergenic 30.0%
GAACCTCAATGTACATATAA+TGG - chr2_2:66364520-66364539 None:intergenic 30.0%
TTAAAACCAATCATGAAGCA+TGG - chr2_2:66364676-66364695 None:intergenic 30.0%
GTGTTTGTTTGCTTCAAAAA+AGG - chr2_2:66364766-66364785 None:intergenic 30.0%
GTGTTGGAAGAAACTTAATT+AGG - chr2_2:66364931-66364950 None:intergenic 30.0%
AATCTAGGTAGATTCTAACT+TGG - chr2_2:66365080-66365099 None:intergenic 30.0%
TCTTCATTATGTACATCAAG+GGG - chr2_2:66365149-66365168 None:intergenic 30.0%
CATCTTCATTATGTACATCA+AGG - chr2_2:66365151-66365170 None:intergenic 30.0%
CTTGATGTACATAATGAAGA+TGG + chr2_2:66365149-66365168 Msa0265950:intron 30.0%
GAAGATGGAGATAAATTAGT+AGG + chr2_2:66365164-66365183 Msa0265950:intron 30.0%
TTGCACTTCTTCAACAATTA+TGG + chr2_2:66365188-66365207 Msa0265950:intron 30.0%
TGCACTTCTTCAACAATTAT+GGG + chr2_2:66365189-66365208 Msa0265950:intron 30.0%
!! TTTTGTTTCTTCAATGTTGG+TGG + chr2_2:66365511-66365530 Msa0265950:intron 30.0%
!!! GTTATGAAGATTTGTTTTGG+GGG + chr2_2:66365875-66365894 Msa0265950:intron 30.0%
!!! TTCTTGCTTTTATTTTTGGC+AGG + chr2_2:66366141-66366160 Msa0265950:intron 30.0%
ATCAATAATCCATACCCTTT+CGG - chr2_2:66364247-66364266 None:intergenic 30.0%
CTCAAATGGTTAATAAGCTT+CGG - chr2_2:66364366-66364385 None:intergenic 30.0%
GAACCTCAATGTACATATAA+TGG - chr2_2:66364520-66364539 None:intergenic 30.0%
TTAAAACCAATCATGAAGCA+TGG - chr2_2:66364676-66364695 None:intergenic 30.0%
GTGTTTGTTTGCTTCAAAAA+AGG - chr2_2:66364766-66364785 None:intergenic 30.0%
GTGTTGGAAGAAACTTAATT+AGG - chr2_2:66364931-66364950 None:intergenic 30.0%
AATCTAGGTAGATTCTAACT+TGG - chr2_2:66365080-66365099 None:intergenic 30.0%
TCTTCATTATGTACATCAAG+GGG - chr2_2:66365149-66365168 None:intergenic 30.0%
CATCTTCATTATGTACATCA+AGG - chr2_2:66365151-66365170 None:intergenic 30.0%
CTTGATGTACATAATGAAGA+TGG + chr2_2:66365149-66365168 Msa0265950:intron 30.0%
GAAGATGGAGATAAATTAGT+AGG + chr2_2:66365164-66365183 Msa0265950:intron 30.0%
TTGCACTTCTTCAACAATTA+TGG + chr2_2:66365188-66365207 Msa0265950:intron 30.0%
TGCACTTCTTCAACAATTAT+GGG + chr2_2:66365189-66365208 Msa0265950:intron 30.0%
!! TTTTGTTTCTTCAATGTTGG+TGG + chr2_2:66365511-66365530 Msa0265950:intron 30.0%
!!! GTTATGAAGATTTGTTTTGG+GGG + chr2_2:66365875-66365894 Msa0265950:intron 30.0%
!!! TTCTTGCTTTTATTTTTGGC+AGG + chr2_2:66366141-66366160 Msa0265950:intron 30.0%
TACTTGCCTCATAAGAACTA+AGG - chr2_2:66364286-66364305 None:intergenic 35.0%
TGGTTAATAAGCTTCGGTTA+AGG - chr2_2:66364360-66364379 None:intergenic 35.0%
! CACATCATTAAATTGGCTTC+AGG + chr2_2:66364582-66364601 Msa0265950:intron 35.0%
! TAAATTGGCTTCAGGTTAGA+AGG + chr2_2:66364590-66364609 Msa0265950:intron 35.0%
CTAAAATTAGTGAGCGTATG+AGG + chr2_2:66364614-66364633 Msa0265950:exon 35.0%
ATGGTACCTTATCCATGTTT+GGG - chr2_2:66364657-66364676 None:intergenic 35.0%
AACAAACACAGCAGATATGT+TGG + chr2_2:66364777-66364796 Msa0265950:CDS 35.0%
TGAAGCTTCTATACAAGTGT+TGG - chr2_2:66364947-66364966 None:intergenic 35.0%
AGCAGCAACAACAACAATAA+CGG + chr2_2:66364999-66365018 Msa0265950:intron 35.0%
GGGGTGAATGAATTTATCTT+TGG - chr2_2:66365130-66365149 None:intergenic 35.0%
AACAATTATGGGAACTAGCT+AGG + chr2_2:66365200-66365219 Msa0265950:intron 35.0%
ACAATTATGGGAACTAGCTA+GGG + chr2_2:66365201-66365220 Msa0265950:intron 35.0%
GTATGTACAAAAAGTCCATG+TGG + chr2_2:66365275-66365294 Msa0265950:intron 35.0%
AATTGGATCTACTTACCACA+TGG - chr2_2:66365293-66365312 None:intergenic 35.0%
CGTTTACGTTTCACATTGAA+TGG + chr2_2:66365379-66365398 Msa0265950:intron 35.0%
TACGTTTCACATTGAATGGT+TGG + chr2_2:66365383-66365402 Msa0265950:intron 35.0%
! ACAAAAATATGTCGGTGTCT+CGG - chr2_2:66365433-66365452 None:intergenic 35.0%
!! AGACACCGACATATTTTTGT+TGG + chr2_2:66365433-66365452 Msa0265950:intron 35.0%
!! TATGTATGACGGATGAAGAT+GGG - chr2_2:66366031-66366050 None:intergenic 35.0%
!! TTATGTATGACGGATGAAGA+TGG - chr2_2:66366032-66366051 None:intergenic 35.0%
ATTTAACATCAACATGTGGC+AGG - chr2_2:66366179-66366198 None:intergenic 35.0%
!!! TCCTAGCTTTGCCAAATTTT+AGG + chr2_2:66366227-66366246 Msa0265950:CDS 35.0%
!! TAGCTTTGCCAAATTTTAGG+CGG + chr2_2:66366230-66366249 Msa0265950:CDS 35.0%
TACTTGCCTCATAAGAACTA+AGG - chr2_2:66364286-66364305 None:intergenic 35.0%
TGGTTAATAAGCTTCGGTTA+AGG - chr2_2:66364360-66364379 None:intergenic 35.0%
! CACATCATTAAATTGGCTTC+AGG + chr2_2:66364582-66364601 Msa0265950:intron 35.0%
! TAAATTGGCTTCAGGTTAGA+AGG + chr2_2:66364590-66364609 Msa0265950:intron 35.0%
CTAAAATTAGTGAGCGTATG+AGG + chr2_2:66364614-66364633 Msa0265950:exon 35.0%
ATGGTACCTTATCCATGTTT+GGG - chr2_2:66364657-66364676 None:intergenic 35.0%
AACAAACACAGCAGATATGT+TGG + chr2_2:66364777-66364796 Msa0265950:CDS 35.0%
TGAAGCTTCTATACAAGTGT+TGG - chr2_2:66364947-66364966 None:intergenic 35.0%
AGCAGCAACAACAACAATAA+CGG + chr2_2:66364999-66365018 Msa0265950:intron 35.0%
GGGGTGAATGAATTTATCTT+TGG - chr2_2:66365130-66365149 None:intergenic 35.0%
AACAATTATGGGAACTAGCT+AGG + chr2_2:66365200-66365219 Msa0265950:intron 35.0%
ACAATTATGGGAACTAGCTA+GGG + chr2_2:66365201-66365220 Msa0265950:intron 35.0%
GTATGTACAAAAAGTCCATG+TGG + chr2_2:66365275-66365294 Msa0265950:intron 35.0%
AATTGGATCTACTTACCACA+TGG - chr2_2:66365293-66365312 None:intergenic 35.0%
CGTTTACGTTTCACATTGAA+TGG + chr2_2:66365379-66365398 Msa0265950:intron 35.0%
TACGTTTCACATTGAATGGT+TGG + chr2_2:66365383-66365402 Msa0265950:intron 35.0%
! ACAAAAATATGTCGGTGTCT+CGG - chr2_2:66365433-66365452 None:intergenic 35.0%
!! AGACACCGACATATTTTTGT+TGG + chr2_2:66365433-66365452 Msa0265950:intron 35.0%
!! TATGTATGACGGATGAAGAT+GGG - chr2_2:66366031-66366050 None:intergenic 35.0%
!! TTATGTATGACGGATGAAGA+TGG - chr2_2:66366032-66366051 None:intergenic 35.0%
ATTTAACATCAACATGTGGC+AGG - chr2_2:66366179-66366198 None:intergenic 35.0%
!!! TCCTAGCTTTGCCAAATTTT+AGG + chr2_2:66366227-66366246 Msa0265950:CDS 35.0%
!! TAGCTTTGCCAAATTTTAGG+CGG + chr2_2:66366230-66366249 Msa0265950:CDS 35.0%
AACCATTTGAGCAAACCACT+TGG + chr2_2:66364375-66364394 Msa0265950:intron 40.0%
!! AACCAAGTGGTTTGCTCAAA+TGG - chr2_2:66364380-66364399 None:intergenic 40.0%
GGGCCATTATATGTACATTG+AGG + chr2_2:66364514-66364533 Msa0265950:intron 40.0%
TATGAGGAAGCTACAAGATC+TGG + chr2_2:66364630-66364649 Msa0265950:exon 40.0%
CATGGTACCTTATCCATGTT+TGG - chr2_2:66364658-66364677 None:intergenic 40.0%
! AAGGTACCATGCTTCATGAT+TGG + chr2_2:66364667-66364686 Msa0265950:intron 40.0%
!! ATACCTGAGCTTGCTTTTGA+AGG - chr2_2:66364828-66364847 None:intergenic 40.0%
AACTAGCTAGGGAAGAAAAG+TGG + chr2_2:66365212-66365231 Msa0265950:intron 40.0%
ACTAGCTAGGGAAGAAAAGT+GGG + chr2_2:66365213-66365232 Msa0265950:intron 40.0%
TGGGCCCTAAATGCTTAAAT+TGG - chr2_2:66365310-66365329 None:intergenic 40.0%
! AAGCATTTAGGGCCCATATT+TGG + chr2_2:66365314-66365333 Msa0265950:intron 40.0%
! GTTGGCGTTGGATTATAACA+TGG + chr2_2:66365401-66365420 Msa0265950:intron 40.0%
GCGTTGGATTATAACATGGT+GGG + chr2_2:66365405-66365424 Msa0265950:intron 40.0%
!! TCTTCAATGTTGGTGGTGTT+TGG + chr2_2:66365518-66365537 Msa0265950:intron 40.0%
! ATTTCTAAAAATGCGGACCG+TGG + chr2_2:66366051-66366070 Msa0265950:intron 40.0%
! TTTCTAAAAATGCGGACCGT+GGG + chr2_2:66366052-66366071 Msa0265950:intron 40.0%
GCCTAAAATTTGGCAAAGCT+AGG - chr2_2:66366231-66366250 None:intergenic 40.0%
CCACTAATCCGCCTAAAATT+TGG - chr2_2:66366241-66366260 None:intergenic 40.0%
!!! CCAAATTTTAGGCGGATTAG+TGG + chr2_2:66366238-66366257 Msa0265950:CDS 40.0%
!!! AATTTTAGGCGGATTAGTGG+TGG + chr2_2:66366241-66366260 Msa0265950:CDS 40.0%
AACCATTTGAGCAAACCACT+TGG + chr2_2:66364375-66364394 Msa0265950:intron 40.0%
!! AACCAAGTGGTTTGCTCAAA+TGG - chr2_2:66364380-66364399 None:intergenic 40.0%
GGGCCATTATATGTACATTG+AGG + chr2_2:66364514-66364533 Msa0265950:intron 40.0%
TATGAGGAAGCTACAAGATC+TGG + chr2_2:66364630-66364649 Msa0265950:exon 40.0%
CATGGTACCTTATCCATGTT+TGG - chr2_2:66364658-66364677 None:intergenic 40.0%
! AAGGTACCATGCTTCATGAT+TGG + chr2_2:66364667-66364686 Msa0265950:intron 40.0%
!! ATACCTGAGCTTGCTTTTGA+AGG - chr2_2:66364828-66364847 None:intergenic 40.0%
AACTAGCTAGGGAAGAAAAG+TGG + chr2_2:66365212-66365231 Msa0265950:intron 40.0%
ACTAGCTAGGGAAGAAAAGT+GGG + chr2_2:66365213-66365232 Msa0265950:intron 40.0%
TGGGCCCTAAATGCTTAAAT+TGG - chr2_2:66365310-66365329 None:intergenic 40.0%
! AAGCATTTAGGGCCCATATT+TGG + chr2_2:66365314-66365333 Msa0265950:intron 40.0%
! GTTGGCGTTGGATTATAACA+TGG + chr2_2:66365401-66365420 Msa0265950:intron 40.0%
GCGTTGGATTATAACATGGT+GGG + chr2_2:66365405-66365424 Msa0265950:intron 40.0%
!! TCTTCAATGTTGGTGGTGTT+TGG + chr2_2:66365518-66365537 Msa0265950:intron 40.0%
! ATTTCTAAAAATGCGGACCG+TGG + chr2_2:66366051-66366070 Msa0265950:intron 40.0%
! TTTCTAAAAATGCGGACCGT+GGG + chr2_2:66366052-66366071 Msa0265950:intron 40.0%
GCCTAAAATTTGGCAAAGCT+AGG - chr2_2:66366231-66366250 None:intergenic 40.0%
CCACTAATCCGCCTAAAATT+TGG - chr2_2:66366241-66366260 None:intergenic 40.0%
!!! CCAAATTTTAGGCGGATTAG+TGG + chr2_2:66366238-66366257 Msa0265950:CDS 40.0%
!!! AATTTTAGGCGGATTAGTGG+TGG + chr2_2:66366241-66366260 Msa0265950:CDS 40.0%
ACAAGATCTGGTCCCAAACA+TGG + chr2_2:66364642-66364661 Msa0265950:CDS 45.0%
TCTGGTCCCAAACATGGATA+AGG + chr2_2:66364648-66364667 Msa0265950:CDS 45.0%
CACAGCAGATATGTTGGACT+TGG + chr2_2:66364783-66364802 Msa0265950:CDS 45.0%
AGATATGTTGGACTTGGCTG+TGG + chr2_2:66364789-66364808 Msa0265950:CDS 45.0%
AGACCTTCAAAAGCAAGCTC+AGG + chr2_2:66364822-66364841 Msa0265950:CDS 45.0%
! GTTGTTGTTGCTGCTTGTGT+GGG - chr2_2:66364994-66365013 None:intergenic 45.0%
! TGTTGTTGTTGCTGCTTGTG+TGG - chr2_2:66364995-66365014 None:intergenic 45.0%
TCACATTGAATGGTTGGCGT+TGG + chr2_2:66365389-66365408 Msa0265950:intron 45.0%
! GGCGTTGGATTATAACATGG+TGG + chr2_2:66365404-66365423 Msa0265950:intron 45.0%
TGGTGTTTGGTAAAGCCAAC+TGG + chr2_2:66365531-66365550 Msa0265950:intron 45.0%
TGTTTGGTAAAGCCAACTGG+TGG + chr2_2:66365534-66365553 Msa0265950:intron 45.0%
TGCAAATGAGAACCACCAGT+TGG - chr2_2:66365549-66365568 None:intergenic 45.0%
! AAGGGACGCACATTTGTTAG+AGG + chr2_2:66365697-66365716 Msa0265950:intron 45.0%
!! CATCACATCGACTTTGTGCT+AGG - chr2_2:66365797-66365816 None:intergenic 45.0%
CTAGCACAAAGTCGATGTGA+TGG + chr2_2:66365795-66365814 Msa0265950:intron 45.0%
!! ACGGATGAAGATGGGTTGAA+GGG - chr2_2:66366023-66366042 None:intergenic 45.0%
ACAAGATCTGGTCCCAAACA+TGG + chr2_2:66364642-66364661 Msa0265950:CDS 45.0%
TCTGGTCCCAAACATGGATA+AGG + chr2_2:66364648-66364667 Msa0265950:CDS 45.0%
CACAGCAGATATGTTGGACT+TGG + chr2_2:66364783-66364802 Msa0265950:CDS 45.0%
AGATATGTTGGACTTGGCTG+TGG + chr2_2:66364789-66364808 Msa0265950:CDS 45.0%
AGACCTTCAAAAGCAAGCTC+AGG + chr2_2:66364822-66364841 Msa0265950:CDS 45.0%
! GTTGTTGTTGCTGCTTGTGT+GGG - chr2_2:66364994-66365013 None:intergenic 45.0%
! TGTTGTTGTTGCTGCTTGTG+TGG - chr2_2:66364995-66365014 None:intergenic 45.0%
TCACATTGAATGGTTGGCGT+TGG + chr2_2:66365389-66365408 Msa0265950:intron 45.0%
! GGCGTTGGATTATAACATGG+TGG + chr2_2:66365404-66365423 Msa0265950:intron 45.0%
TGGTGTTTGGTAAAGCCAAC+TGG + chr2_2:66365531-66365550 Msa0265950:intron 45.0%
TGTTTGGTAAAGCCAACTGG+TGG + chr2_2:66365534-66365553 Msa0265950:intron 45.0%
TGCAAATGAGAACCACCAGT+TGG - chr2_2:66365549-66365568 None:intergenic 45.0%
! AAGGGACGCACATTTGTTAG+AGG + chr2_2:66365697-66365716 Msa0265950:intron 45.0%
!! CATCACATCGACTTTGTGCT+AGG - chr2_2:66365797-66365816 None:intergenic 45.0%
CTAGCACAAAGTCGATGTGA+TGG + chr2_2:66365795-66365814 Msa0265950:intron 45.0%
!! ACGGATGAAGATGGGTTGAA+GGG - chr2_2:66366023-66366042 None:intergenic 45.0%
!! ATCAAAAAAATATATATATA+GGG - chr2_2:66365977-66365996 None:intergenic 5.0%
!! ATCAAAAAAATATATATATA+GGG - chr2_2:66365977-66365996 None:intergenic 5.0%
TTCGGCAATGCTTCTTGGGT+GGG - chr2_2:66364229-66364248 None:intergenic 50.0%
TTTCGGCAATGCTTCTTGGG+TGG - chr2_2:66364230-66364249 None:intergenic 50.0%
!! ACCCAAGAAGCATTGCCGAA+AGG + chr2_2:66364229-66364248 Msa0265950:five_prime_UTR 50.0%
CCCTTTCGGCAATGCTTCTT+GGG - chr2_2:66364233-66364252 None:intergenic 50.0%
!! CCCAAGAAGCATTGCCGAAA+GGG + chr2_2:66364230-66364249 Msa0265950:five_prime_UTR 50.0%
ACCCTTTCGGCAATGCTTCT+TGG - chr2_2:66364234-66364253 None:intergenic 50.0%
!! GAAGCATTGCCGAAAGGGTA+TGG + chr2_2:66364235-66364254 Msa0265950:intron 50.0%
!! GACGGATGAAGATGGGTTGA+AGG - chr2_2:66366024-66366043 None:intergenic 50.0%
CTGATGAACCAATCTGCCCA+CGG - chr2_2:66366071-66366090 None:intergenic 50.0%
CATGTGGCAGGTCGACAAAT+CGG - chr2_2:66366167-66366186 None:intergenic 50.0%
!! AGGCGGATTAGTGGTGGTAA+TGG + chr2_2:66366247-66366266 Msa0265950:CDS 50.0%
!! GGCGGATTAGTGGTGGTAAT+GGG + chr2_2:66366248-66366267 Msa0265950:CDS 50.0%
!! GCGGATTAGTGGTGGTAATG+GGG + chr2_2:66366249-66366268 Msa0265950:CDS 50.0%
TTCGGCAATGCTTCTTGGGT+GGG - chr2_2:66364229-66364248 None:intergenic 50.0%
TTTCGGCAATGCTTCTTGGG+TGG - chr2_2:66364230-66364249 None:intergenic 50.0%
!! ACCCAAGAAGCATTGCCGAA+AGG + chr2_2:66364229-66364248 Msa0265950:five_prime_UTR 50.0%
CCCTTTCGGCAATGCTTCTT+GGG - chr2_2:66364233-66364252 None:intergenic 50.0%
!! CCCAAGAAGCATTGCCGAAA+GGG + chr2_2:66364230-66364249 Msa0265950:five_prime_UTR 50.0%
ACCCTTTCGGCAATGCTTCT+TGG - chr2_2:66364234-66364253 None:intergenic 50.0%
!! GAAGCATTGCCGAAAGGGTA+TGG + chr2_2:66364235-66364254 Msa0265950:intron 50.0%
!! GACGGATGAAGATGGGTTGA+AGG - chr2_2:66366024-66366043 None:intergenic 50.0%
CTGATGAACCAATCTGCCCA+CGG - chr2_2:66366071-66366090 None:intergenic 50.0%
CATGTGGCAGGTCGACAAAT+CGG - chr2_2:66366167-66366186 None:intergenic 50.0%
!! AGGCGGATTAGTGGTGGTAA+TGG + chr2_2:66366247-66366266 Msa0265950:CDS 50.0%
!! GGCGGATTAGTGGTGGTAAT+GGG + chr2_2:66366248-66366267 Msa0265950:CDS 50.0%
!! GCGGATTAGTGGTGGTAATG+GGG + chr2_2:66366249-66366268 Msa0265950:CDS 50.0%
GGCAATGCTTCTTGGGTGGG+TGG - chr2_2:66364226-66364245 None:intergenic 60.0%
AATGCGGACCGTGGGCAGAT+TGG + chr2_2:66366060-66366079 Msa0265950:intron 60.0%
GGCAATGCTTCTTGGGTGGG+TGG - chr2_2:66364226-66364245 None:intergenic 60.0%
AATGCGGACCGTGGGCAGAT+TGG + chr2_2:66366060-66366079 Msa0265950:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66364210 66366276 66364210 ID=Msa0265950;Name=Msa0265950
chr2_2 mRNA 66364210 66366276 66364210 ID=Msa0265950-mRNA-1;Parent=Msa0265950;Name=Msa0265950-mRNA-1;_AED=0.59;_eAED=0.59;_QI=69|0.66|0.75|0.75|0.66|0.5|4|0|73
chr2_2 exon 66364210 66364251 66364210 ID=Msa0265950-mRNA-1:exon:20996;Parent=Msa0265950-mRNA-1
chr2_2 exon 66364604 66364669 66364604 ID=Msa0265950-mRNA-1:exon:20997;Parent=Msa0265950-mRNA-1
chr2_2 exon 66364775 66364843 66364775 ID=Msa0265950-mRNA-1:exon:20998;Parent=Msa0265950-mRNA-1
chr2_2 exon 66366163 66366276 66366163 ID=Msa0265950-mRNA-1:exon:20999;Parent=Msa0265950-mRNA-1
chr2_2 five_prime_UTR 66364210 66364251 66364210 ID=Msa0265950-mRNA-1:five_prime_utr;Parent=Msa0265950-mRNA-1
chr2_2 five_prime_UTR 66364604 66364630 66364604 ID=Msa0265950-mRNA-1:five_prime_utr;Parent=Msa0265950-mRNA-1
chr2_2 CDS 66364631 66364669 66364631 ID=Msa0265950-mRNA-1:cds;Parent=Msa0265950-mRNA-1
chr2_2 CDS 66364775 66364843 66364775 ID=Msa0265950-mRNA-1:cds;Parent=Msa0265950-mRNA-1
chr2_2 CDS 66366163 66366276 66366163 ID=Msa0265950-mRNA-1:cds;Parent=Msa0265950-mRNA-1
Gene Sequence

>Msa0265950

ATGAGGAAGCTACAAGATCTGGTCCCAAACATGGATAAGCAAACAAACACAGCAGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGCTCAGGCCGATTTGTCGACCTGCCACATGTTGATGTTAAATTTTCAACCTATTTTTCTTATTTTACATGTCCTAGCTTTGCCAAATTTTAGGCGGATTAGTGGTGGTAATGGGGCTTAA

Protein sequence

>Msa0265950

MRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQADLSTCHMLMLNFQPIFLILHVLALPNFRRISGGNGA*